Query 047635
Match_columns 388
No_of_seqs 370 out of 2903
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02357 serine acetyltransfer 100.0 1.3E-70 2.8E-75 543.8 32.5 354 12-388 3-360 (360)
2 PLN02694 serine O-acetyltransf 100.0 1.9E-60 4.2E-65 460.3 30.4 277 112-388 18-294 (294)
3 KOG4750 Serine O-acetyltransfe 100.0 2.9E-58 6.2E-63 424.1 13.0 255 121-380 15-269 (269)
4 PLN02739 serine acetyltransfer 100.0 3.4E-55 7.3E-60 431.2 27.2 256 117-377 68-323 (355)
5 PRK11132 cysE serine acetyltra 100.0 9.1E-52 2E-56 399.0 28.5 256 118-378 5-260 (273)
6 COG1045 CysE Serine acetyltran 100.0 2E-42 4.2E-47 315.3 16.7 169 193-361 6-174 (194)
7 TIGR01172 cysE serine O-acetyl 100.0 2.2E-29 4.9E-34 226.6 18.7 161 195-355 2-162 (162)
8 PF06426 SATase_N: Serine acet 99.9 1E-21 2.3E-26 165.1 8.1 105 122-226 1-105 (105)
9 PRK10191 putative acyl transfe 99.8 1.6E-19 3.4E-24 160.4 15.0 107 250-357 37-143 (146)
10 COG1045 CysE Serine acetyltran 99.8 5.9E-19 1.3E-23 161.5 12.7 146 122-327 3-158 (194)
11 PRK10502 putative acyl transfe 99.8 4.2E-18 9.1E-23 156.1 14.8 57 305-361 123-179 (182)
12 PRK10092 maltose O-acetyltrans 99.8 4.1E-18 9E-23 156.5 13.8 106 252-359 65-182 (183)
13 PLN02694 serine O-acetyltransf 99.8 1.1E-18 2.4E-23 169.7 10.5 175 97-333 71-255 (294)
14 PLN02739 serine acetyltransfer 99.8 3.6E-18 7.9E-23 169.2 14.0 184 97-342 116-310 (355)
15 PRK09527 lacA galactoside O-ac 99.8 4.5E-18 9.8E-23 158.7 13.9 108 252-361 67-186 (203)
16 cd03357 LbH_MAT_GAT Maltose O- 99.7 1.5E-17 3.2E-22 150.4 12.1 104 254-357 62-169 (169)
17 COG0110 WbbJ Acetyltransferase 99.7 2.4E-17 5.1E-22 150.1 11.0 104 259-362 66-180 (190)
18 cd05825 LbH_wcaF_like wcaF-lik 99.7 6.9E-17 1.5E-21 135.4 12.6 105 253-357 2-107 (107)
19 PRK09677 putative lipopolysacc 99.7 1.7E-16 3.7E-21 146.6 16.0 56 306-361 130-185 (192)
20 cd03349 LbH_XAT Xenobiotic acy 99.7 1.4E-16 3E-21 141.2 11.6 106 255-361 2-128 (145)
21 cd03354 LbH_SAT Serine acetylt 99.7 3.8E-16 8.2E-21 129.1 13.3 100 254-353 2-101 (101)
22 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 1.7E-16 3.7E-21 150.8 11.8 57 306-362 160-216 (231)
23 cd03358 LbH_WxcM_N_like WcxM-l 99.7 3.3E-16 7.1E-21 132.0 12.2 104 253-358 9-119 (119)
24 PLN02357 serine acetyltransfer 99.7 1.8E-16 3.8E-21 158.2 12.3 181 98-340 138-329 (360)
25 TIGR03308 phn_thr-fam phosphon 99.7 2E-16 4.3E-21 147.8 10.7 121 254-386 19-179 (204)
26 PRK11132 cysE serine acetyltra 99.7 2.8E-16 6.2E-21 152.4 10.5 167 105-333 60-236 (273)
27 KOG4750 Serine O-acetyltransfe 99.7 1.2E-16 2.6E-21 148.5 6.9 169 112-341 74-252 (269)
28 PRK05289 UDP-N-acetylglucosami 99.6 5.7E-16 1.2E-20 149.6 10.4 106 254-359 80-194 (262)
29 cd04646 LbH_Dynactin_6 Dynacti 99.6 8E-16 1.7E-20 138.8 10.5 124 253-383 16-155 (164)
30 PRK13627 carnitine operon prot 99.6 1.4E-15 3.1E-20 141.2 11.9 110 252-361 26-145 (196)
31 PRK12461 UDP-N-acetylglucosami 99.6 5E-16 1.1E-20 149.7 8.4 107 254-360 77-191 (255)
32 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 1.3E-15 2.9E-20 151.4 10.8 113 253-365 194-312 (324)
33 COG0663 PaaY Carbonic anhydras 99.6 9.2E-16 2E-20 139.0 8.1 111 248-361 23-146 (176)
34 cd03360 LbH_AT_putative Putati 99.6 4.5E-15 9.8E-20 133.0 12.2 48 306-353 150-197 (197)
35 cd03350 LbH_THP_succinylT 2,3, 99.6 6.6E-15 1.4E-19 128.8 12.2 99 254-354 25-139 (139)
36 PLN02296 carbonate dehydratase 99.6 6.7E-15 1.4E-19 142.9 12.8 110 252-361 68-193 (269)
37 cd04745 LbH_paaY_like paaY-lik 99.6 1.5E-14 3.2E-19 128.9 13.4 109 253-361 17-135 (155)
38 TIGR01852 lipid_A_lpxA acyl-[a 99.6 1E-14 2.2E-19 140.1 12.8 106 254-359 76-190 (254)
39 TIGR03570 NeuD_NnaD sugar O-ac 99.6 9.8E-15 2.1E-19 132.6 11.9 98 255-354 100-201 (201)
40 cd03352 LbH_LpxD UDP-3-O-acyl- 99.6 1E-14 2.2E-19 134.7 11.9 108 253-360 91-204 (205)
41 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 2.1E-14 4.6E-19 137.8 13.9 106 254-359 77-191 (254)
42 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 9.3E-15 2E-19 146.2 11.0 113 253-365 202-321 (343)
43 cd04647 LbH_MAT_like Maltose O 99.6 2.6E-14 5.5E-19 118.3 11.7 103 255-357 2-109 (109)
44 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 2.7E-14 5.8E-19 137.9 12.1 103 252-354 104-238 (269)
45 TIGR02287 PaaY phenylacetic ac 99.5 5.2E-14 1.1E-18 130.4 12.0 110 252-361 24-143 (192)
46 PLN02472 uncharacterized prote 99.5 6E-14 1.3E-18 134.6 12.7 111 252-362 75-201 (246)
47 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 1.4E-13 3E-18 133.7 13.2 110 252-361 107-258 (272)
48 cd04650 LbH_FBP Ferripyochelin 99.5 3.2E-13 7E-18 120.5 12.2 110 252-361 16-135 (154)
49 PRK09451 glmU bifunctional N-a 99.5 3.2E-13 7E-18 139.3 12.2 60 306-365 394-454 (456)
50 TIGR01173 glmU UDP-N-acetylglu 99.5 3.9E-13 8.5E-18 137.6 12.7 54 306-359 390-443 (451)
51 PRK14360 glmU bifunctional N-a 99.5 3.8E-13 8.3E-18 138.1 12.2 54 306-359 390-443 (450)
52 cd03359 LbH_Dynactin_5 Dynacti 99.4 8.3E-13 1.8E-17 118.5 12.4 108 254-361 21-146 (161)
53 PRK14353 glmU bifunctional N-a 99.4 8.9E-13 1.9E-17 135.3 12.6 54 306-359 380-433 (446)
54 TIGR02353 NRPS_term_dom non-ri 99.4 1.2E-12 2.5E-17 142.2 13.8 101 260-361 112-217 (695)
55 PRK14357 glmU bifunctional N-a 99.4 1.9E-12 4.1E-17 133.0 13.3 54 306-359 383-436 (448)
56 PRK14352 glmU bifunctional N-a 99.4 1.8E-12 3.8E-17 135.0 12.9 58 306-363 399-457 (482)
57 TIGR01172 cysE serine O-acetyl 99.4 2.6E-12 5.7E-17 115.7 12.1 146 126-333 1-156 (162)
58 cd04645 LbH_gamma_CA_like Gamm 99.4 3.2E-12 6.9E-17 113.4 11.9 110 252-361 15-134 (153)
59 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 3.3E-12 7E-17 117.2 12.1 49 306-354 144-192 (193)
60 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 8.9E-13 1.9E-17 130.0 8.6 117 249-365 197-319 (338)
61 PRK14359 glmU bifunctional N-a 99.4 2.4E-12 5.3E-17 131.3 12.0 56 306-361 367-423 (430)
62 COG1043 LpxA Acyl-[acyl carrie 99.4 6.6E-13 1.4E-17 125.1 6.9 112 252-371 79-207 (260)
63 cd03360 LbH_AT_putative Putati 99.4 1.2E-11 2.6E-16 110.7 13.9 105 255-370 91-197 (197)
64 TIGR03570 NeuD_NnaD sugar O-ac 99.3 1.6E-11 3.5E-16 111.4 13.1 107 254-371 93-201 (201)
65 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.3 7.6E-12 1.6E-16 119.1 11.1 113 255-376 87-213 (231)
66 COG1207 GlmU N-acetylglucosami 99.3 1.1E-11 2.3E-16 125.3 12.2 52 307-358 398-449 (460)
67 PRK14355 glmU bifunctional N-a 99.3 1.3E-11 2.9E-16 127.5 12.8 52 306-357 397-448 (459)
68 COG2171 DapD Tetrahydrodipicol 99.3 3.7E-12 7.9E-17 122.0 6.7 78 274-351 150-227 (271)
69 PRK14354 glmU bifunctional N-a 99.3 2E-11 4.4E-16 125.6 12.0 51 306-356 393-443 (458)
70 cd00208 LbetaH Left-handed par 99.3 3.4E-11 7.3E-16 93.0 9.9 77 262-340 2-78 (78)
71 PRK14356 glmU bifunctional N-a 99.3 3.2E-11 6.9E-16 124.2 12.6 56 306-361 398-453 (456)
72 cd04649 LbH_THP_succinylT_puta 99.3 1.6E-11 3.4E-16 108.8 8.5 36 306-343 73-108 (147)
73 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 6.1E-11 1.3E-15 109.6 12.6 69 306-375 132-202 (205)
74 PRK12461 UDP-N-acetylglucosami 99.2 6.5E-11 1.4E-15 114.3 11.2 119 254-373 47-187 (255)
75 TIGR02353 NRPS_term_dom non-ri 99.2 4.5E-11 9.7E-16 130.0 11.3 99 252-354 595-695 (695)
76 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 5.8E-11 1.3E-15 118.3 11.1 69 307-376 236-306 (324)
77 cd03358 LbH_WxcM_N_like WcxM-l 99.2 1.1E-10 2.3E-15 98.4 11.1 90 276-374 12-118 (119)
78 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 8.7E-11 1.9E-15 117.7 11.4 69 306-375 243-314 (343)
79 TIGR01852 lipid_A_lpxA acyl-[a 99.2 2E-10 4.2E-15 110.4 12.9 100 274-374 76-188 (254)
80 cd00710 LbH_gamma_CA Gamma car 99.2 1.8E-10 4E-15 103.9 12.0 97 252-349 18-125 (167)
81 cd03350 LbH_THP_succinylT 2,3, 99.2 3.3E-10 7.1E-15 99.1 12.9 93 254-357 7-109 (139)
82 TIGR03535 DapD_actino 2,3,4,5- 99.2 1E-10 2.2E-15 114.3 10.5 91 252-344 163-261 (319)
83 PRK05289 UDP-N-acetylglucosami 99.2 1.2E-10 2.7E-15 112.6 10.0 68 306-374 123-192 (262)
84 COG1044 LpxD UDP-3-O-[3-hydrox 99.1 1.4E-10 2.9E-15 114.7 9.0 20 324-343 202-221 (338)
85 PRK10502 putative acyl transfe 99.1 2.5E-10 5.4E-15 104.7 10.0 113 251-376 48-177 (182)
86 PRK14358 glmU bifunctional N-a 99.1 3E-10 6.5E-15 118.6 11.7 47 306-352 399-445 (481)
87 PRK09527 lacA galactoside O-ac 99.1 3.8E-10 8.2E-15 105.5 11.0 108 257-377 58-185 (203)
88 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.1 4.4E-10 9.5E-15 108.0 11.7 98 274-372 77-187 (254)
89 cd04649 LbH_THP_succinylT_puta 99.1 5.7E-10 1.2E-14 98.9 9.9 94 253-359 6-107 (147)
90 cd03357 LbH_MAT_GAT Maltose O- 99.1 1.8E-09 3.9E-14 97.7 12.8 104 257-373 45-168 (169)
91 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 9.1E-10 2E-14 106.6 10.9 94 252-356 98-206 (269)
92 PRK10092 maltose O-acetyltrans 99.0 2.3E-09 4.9E-14 98.8 12.6 93 276-375 69-181 (183)
93 PRK13627 carnitine operon prot 99.0 2.1E-09 4.6E-14 100.0 12.4 89 282-376 51-143 (196)
94 cd05636 LbH_G1P_TT_C_like Puta 99.0 1.5E-09 3.3E-14 97.1 10.9 19 324-342 129-147 (163)
95 cd04745 LbH_paaY_like paaY-lik 99.0 2.5E-09 5.4E-14 95.2 12.1 113 257-377 15-134 (155)
96 cd00710 LbH_gamma_CA Gamma car 99.0 2.1E-09 4.5E-14 97.1 11.6 52 306-357 64-115 (167)
97 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 6.2E-10 1.4E-14 109.4 8.6 35 307-343 251-285 (341)
98 PRK09677 putative lipopolysacc 99.0 2.5E-09 5.4E-14 98.9 11.6 114 253-377 42-184 (192)
99 cd05636 LbH_G1P_TT_C_like Puta 99.0 3.7E-09 8E-14 94.6 12.3 85 254-341 17-104 (163)
100 TIGR03308 phn_thr-fam phosphon 99.0 2.5E-09 5.5E-14 100.0 11.6 114 255-376 9-161 (204)
101 cd04646 LbH_Dynactin_6 Dynacti 99.0 3.5E-09 7.6E-14 95.6 12.0 118 254-375 11-137 (164)
102 PLN02296 carbonate dehydratase 99.0 4.6E-09 1E-13 102.2 12.7 113 260-376 70-191 (269)
103 PRK14353 glmU bifunctional N-a 99.0 4.3E-09 9.3E-14 108.2 13.1 66 306-372 355-429 (446)
104 PLN02472 uncharacterized prote 99.0 4.2E-09 9.1E-14 101.3 12.1 119 254-376 71-198 (246)
105 TIGR02287 PaaY phenylacetic ac 99.0 4.4E-09 9.4E-14 97.6 11.2 90 281-376 48-141 (192)
106 PRK11830 dapD 2,3,4,5-tetrahyd 99.0 3.5E-09 7.5E-14 103.1 10.9 81 252-342 101-194 (272)
107 COG0663 PaaY Carbonic anhydras 98.9 4.9E-09 1.1E-13 95.5 10.1 109 260-376 29-144 (176)
108 PRK14352 glmU bifunctional N-a 98.9 9.4E-09 2E-13 107.2 12.6 70 306-376 374-453 (482)
109 PRK14360 glmU bifunctional N-a 98.9 6.8E-09 1.5E-13 106.7 11.3 68 306-374 365-441 (450)
110 KOG1461 Translation initiation 98.9 1.7E-09 3.6E-14 113.6 6.8 126 211-342 272-420 (673)
111 TIGR01173 glmU UDP-N-acetylglu 98.9 8.4E-09 1.8E-13 105.7 11.7 65 307-372 366-439 (451)
112 cd04650 LbH_FBP Ferripyochelin 98.9 1.7E-08 3.6E-13 90.2 11.4 113 256-376 14-133 (154)
113 PRK10191 putative acyl transfe 98.9 1.3E-08 2.7E-13 90.6 9.6 74 253-337 60-140 (146)
114 cd05787 LbH_eIF2B_epsilon eIF- 98.9 2.1E-08 4.6E-13 78.2 9.8 71 257-340 2-72 (79)
115 cd03359 LbH_Dynactin_5 Dynacti 98.9 2.2E-08 4.8E-13 89.9 11.1 81 260-342 21-113 (161)
116 PRK14357 glmU bifunctional N-a 98.8 1.4E-08 2.9E-13 104.5 10.4 68 306-374 358-434 (448)
117 PRK09451 glmU bifunctional N-a 98.8 2.7E-08 5.8E-13 102.8 12.2 68 306-374 369-446 (456)
118 cd04645 LbH_gamma_CA_like Gamm 98.8 3.5E-08 7.5E-13 87.5 11.1 62 282-348 40-103 (153)
119 PRK14355 glmU bifunctional N-a 98.8 3.9E-08 8.5E-13 101.8 13.0 70 255-336 263-332 (459)
120 PRK14359 glmU bifunctional N-a 98.8 2.5E-08 5.4E-13 101.9 11.4 70 305-375 341-420 (430)
121 cd05635 LbH_unknown Uncharacte 98.8 4E-08 8.6E-13 82.0 10.4 83 254-339 11-94 (101)
122 TIGR03536 DapD_gpp 2,3,4,5-tet 98.8 1.7E-08 3.6E-13 99.4 8.5 98 257-357 175-282 (341)
123 PRK14358 glmU bifunctional N-a 98.7 6.2E-08 1.3E-12 101.3 11.9 56 306-362 374-438 (481)
124 COG0110 WbbJ Acetyltransferase 98.7 6.8E-08 1.5E-12 87.8 10.5 110 255-376 47-177 (190)
125 cd05825 LbH_wcaF_like wcaF-lik 98.7 8.7E-08 1.9E-12 80.2 9.8 101 259-373 2-106 (107)
126 cd00208 LbetaH Left-handed par 98.7 9E-08 2E-12 73.7 9.1 68 256-333 2-77 (78)
127 cd05824 LbH_M1P_guanylylT_C Ma 98.7 7.6E-08 1.6E-12 76.1 8.7 27 307-333 52-78 (80)
128 PRK14354 glmU bifunctional N-a 98.7 9.1E-08 2E-12 98.6 11.6 63 307-370 369-440 (458)
129 cd03353 LbH_GlmU_C N-acetyl-gl 98.7 8.7E-08 1.9E-12 87.9 10.0 83 255-339 10-100 (193)
130 COG1043 LpxA Acyl-[acyl carrie 98.7 3.2E-08 7E-13 93.7 7.2 36 307-342 82-124 (260)
131 TIGR03535 DapD_actino 2,3,4,5- 98.7 7.5E-08 1.6E-12 94.4 9.4 98 253-358 152-258 (319)
132 COG2171 DapD Tetrahydrodipicol 98.7 3.9E-08 8.5E-13 94.5 6.6 86 254-349 114-209 (271)
133 cd04652 LbH_eIF2B_gamma_C eIF- 98.7 1.8E-07 3.9E-12 74.1 9.3 33 307-340 34-66 (81)
134 cd05787 LbH_eIF2B_epsilon eIF- 98.6 1.9E-07 4.2E-12 72.7 9.1 64 263-339 2-65 (79)
135 cd04652 LbH_eIF2B_gamma_C eIF- 98.6 2E-07 4.2E-12 73.9 8.9 46 288-337 35-80 (81)
136 cd05635 LbH_unknown Uncharacte 98.6 4.7E-07 1E-11 75.5 10.6 72 260-342 11-85 (101)
137 KOG3121 Dynactin, subunit p25 98.6 8.7E-08 1.9E-12 84.2 6.3 107 255-361 34-158 (184)
138 cd03356 LbH_G1P_AT_C_like Left 98.6 4.8E-07 1E-11 70.9 9.9 65 257-340 2-66 (79)
139 cd03356 LbH_G1P_AT_C_like Left 98.6 3.6E-07 7.8E-12 71.6 9.1 68 255-334 6-78 (79)
140 cd04651 LbH_G1P_AT_C Glucose-1 98.6 3.1E-07 6.7E-12 76.7 9.1 53 281-343 29-81 (104)
141 cd05824 LbH_M1P_guanylylT_C Ma 98.6 4E-07 8.6E-12 72.0 9.3 65 257-339 2-66 (80)
142 PRK14356 glmU bifunctional N-a 98.6 3.4E-07 7.3E-12 94.4 10.8 84 253-339 262-354 (456)
143 KOG1461 Translation initiation 98.5 1.4E-07 3.1E-12 99.3 7.5 56 255-321 322-382 (673)
144 cd04647 LbH_MAT_like Maltose O 98.5 1.9E-06 4.1E-11 71.0 10.9 79 260-340 1-86 (109)
145 cd03354 LbH_SAT Serine acetylt 98.4 2E-06 4.4E-11 70.8 10.2 20 322-341 52-71 (101)
146 TIGR01208 rmlA_long glucose-1- 98.4 1.1E-06 2.4E-11 87.9 10.2 95 255-356 255-351 (353)
147 cd03349 LbH_XAT Xenobiotic acy 98.4 3.1E-06 6.8E-11 75.1 11.2 114 261-376 2-126 (145)
148 PRK00844 glgC glucose-1-phosph 98.3 1.5E-06 3.2E-11 89.0 9.0 71 258-342 313-383 (407)
149 TIGR02091 glgC glucose-1-phosp 98.3 3.2E-06 6.9E-11 84.6 10.8 77 257-340 280-360 (361)
150 PF14602 Hexapep_2: Hexapeptid 98.3 8.4E-07 1.8E-11 59.8 3.2 33 307-341 2-34 (34)
151 PRK05293 glgC glucose-1-phosph 98.2 5E-06 1.1E-10 83.9 9.7 51 281-341 309-359 (380)
152 TIGR02092 glgD glucose-1-phosp 98.2 8.5E-06 1.8E-10 82.0 10.7 77 259-342 277-356 (369)
153 PLN02241 glucose-1-phosphate a 98.2 4.3E-06 9.3E-11 86.5 8.6 39 255-297 316-354 (436)
154 PRK00725 glgC glucose-1-phosph 98.2 7.8E-06 1.7E-10 84.3 9.5 69 260-342 327-395 (425)
155 COG1208 GCD1 Nucleoside-diphos 98.2 1.1E-05 2.3E-10 81.7 10.1 69 255-335 256-324 (358)
156 TIGR01208 rmlA_long glucose-1- 98.1 7.9E-06 1.7E-10 81.7 8.9 69 255-337 249-317 (353)
157 KOG4042 Dynactin subunit p27/W 98.1 3.5E-06 7.7E-11 74.8 5.3 102 252-353 24-144 (190)
158 PRK05293 glgC glucose-1-phosph 98.1 8.7E-06 1.9E-10 82.1 8.2 32 307-339 309-340 (380)
159 PF00132 Hexapep: Bacterial tr 98.1 1.8E-06 3.8E-11 58.1 2.0 35 306-340 1-35 (36)
160 COG1208 GCD1 Nucleoside-diphos 98.1 9.9E-06 2.1E-10 82.0 8.3 82 249-342 256-342 (358)
161 PLN02241 glucose-1-phosphate a 98.1 9.4E-06 2E-10 83.9 8.3 36 261-300 316-351 (436)
162 KOG1462 Translation initiation 98.1 8.7E-06 1.9E-10 82.0 7.2 68 255-341 335-402 (433)
163 cd04651 LbH_G1P_AT_C Glucose-1 98.0 4.2E-05 9.1E-10 63.8 8.8 66 257-336 15-80 (104)
164 COG1207 GlmU N-acetylglucosami 97.9 2.1E-05 4.5E-10 80.3 6.8 88 252-341 260-355 (460)
165 PRK02862 glgC glucose-1-phosph 97.9 2.9E-05 6.3E-10 80.2 8.0 32 261-296 309-340 (429)
166 KOG1462 Translation initiation 97.8 2.8E-05 6E-10 78.4 6.3 16 173-188 237-252 (433)
167 KOG1460 GDP-mannose pyrophosph 97.8 0.0001 2.2E-09 72.4 9.5 60 275-338 295-354 (407)
168 PRK02862 glgC glucose-1-phosph 97.8 5.5E-05 1.2E-09 78.2 8.1 78 254-336 308-395 (429)
169 KOG1322 GDP-mannose pyrophosph 97.8 3.3E-05 7.1E-10 76.6 6.0 87 252-340 262-350 (371)
170 PRK00725 glgC glucose-1-phosph 97.8 6.4E-05 1.4E-09 77.6 8.5 33 307-340 344-376 (425)
171 PRK00844 glgC glucose-1-phosph 97.8 6.3E-05 1.4E-09 77.1 8.0 71 277-358 312-382 (407)
172 TIGR02091 glgC glucose-1-phosp 97.7 0.00015 3.3E-09 72.5 8.9 35 306-341 310-344 (361)
173 TIGR02092 glgD glucose-1-phosp 97.6 0.00013 2.8E-09 73.5 7.1 77 274-357 278-354 (369)
174 PF00132 Hexapep: Bacterial tr 97.6 4.2E-05 9.1E-10 51.3 2.2 15 307-321 20-34 (36)
175 KOG3121 Dynactin, subunit p25 97.6 0.00015 3.3E-09 64.1 6.1 77 281-359 55-148 (184)
176 KOG1322 GDP-mannose pyrophosph 97.5 9.3E-05 2E-09 73.4 4.5 85 256-343 254-341 (371)
177 PF14602 Hexapep_2: Hexapeptid 97.4 0.00016 3.5E-09 48.7 3.6 31 282-322 3-33 (34)
178 KOG1460 GDP-mannose pyrophosph 97.3 0.00049 1.1E-08 67.7 5.9 87 251-342 285-389 (407)
179 COG0448 GlgC ADP-glucose pyrop 97.0 0.0025 5.4E-08 65.0 8.3 66 262-342 298-363 (393)
180 PF06426 SATase_N: Serine acet 96.4 0.00042 9.1E-09 58.4 -1.8 55 104-159 51-105 (105)
181 COG0448 GlgC ADP-glucose pyrop 96.2 0.011 2.4E-07 60.3 7.0 21 216-236 238-262 (393)
182 COG4801 Predicted acyltransfer 96.2 0.013 2.8E-07 55.9 6.8 14 257-270 19-32 (277)
183 COG4801 Predicted acyltransfer 95.9 0.011 2.4E-07 56.4 4.9 30 307-336 75-104 (277)
184 KOG4042 Dynactin subunit p27/W 92.7 0.084 1.8E-06 47.4 2.6 42 308-349 28-72 (190)
185 PF07959 Fucokinase: L-fucokin 63.5 10 0.00022 39.5 4.6 7 55-61 56-62 (414)
186 PF13720 Acetyltransf_11: Udp 59.4 5.3 0.00011 32.2 1.4 29 342-370 1-29 (83)
187 PF04519 Bactofilin: Polymer-f 56.4 6.6 0.00014 32.1 1.5 38 321-358 60-97 (101)
188 PRK13412 fkp bifunctional fuco 47.5 19 0.0004 41.6 3.7 46 308-353 338-391 (974)
189 PF07959 Fucokinase: L-fucokin 47.4 16 0.00034 38.1 2.9 17 306-322 301-317 (414)
190 COG1664 CcmA Integral membrane 30.0 97 0.0021 27.7 4.8 37 324-360 84-120 (146)
191 PRK15313 autotransport protein 23.0 2.8E+02 0.0061 32.1 7.7 9 325-333 272-280 (955)
192 PF04519 Bactofilin: Polymer-f 22.2 39 0.00084 27.5 0.7 51 307-360 31-82 (101)
No 1
>PLN02357 serine acetyltransferase
Probab=100.00 E-value=1.3e-70 Score=543.82 Aligned_cols=354 Identities=71% Similarity=1.117 Sum_probs=324.5
Q ss_pred cccccc-CCCCCCCccccccccccCCCcCccccCccccccccccceeecccCCc---CCCCCCCCCCCccccceeeccCC
Q 047635 12 PSLYIN-NAPFFSPHKHLLSSQASSRTSPIFSLSKHHREKTSTAVMATCIDTSQ---ISQDPSRSQNDDHAYRYAKHCRP 87 (388)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 87 (388)
++.|.. .++|++|++- +.+.|+|++.. .||+|+||+. ..-.++.+|.||+.|+|.|||+|
T Consensus 3 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (360)
T PLN02357 3 SSSPHISLHSFLLPPFS---------CTSTFSLPKSR-------PMAACIDTCRTGTSQLSPKHHDDDSHFYYIKNFCRP 66 (360)
T ss_pred CCCCcccccccCCCCcc---------ccccccCCCCC-------cchhhhccCCCCCcccCcccccCcccceeeeecccC
Confidence 455555 5888888872 67778887764 5999999953 33334788999999999999999
Q ss_pred CCCCCccccccCcccccccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhc
Q 047635 88 SFSDRVSCVPFNRNQEQAIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLS 167 (388)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~ 167 (388)
+|++.+ .++.+++++..+..+.+ +.+++|++||+||+..+++||+|++||++.||+|++|+++|+++||+||.
T Consensus 67 ~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~w~~~r~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~kl~ 139 (360)
T PLN02357 67 SFSPFS------GNHTKTIHTRPVEDDLD-RDDDVWLKIQEEAKSDVEQEPILSSYYYASILSHRSLESALANHLSVKLS 139 (360)
T ss_pred CCcccc------cCCccccccCCCCcccc-ccchHHHHHHHHHHHHHhcCchHHHHHHHHccCCccHHHHHHHHHHHhhC
Confidence 999876 45667777766666655 66789999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHh
Q 047635 168 SLSLQSGTLFELFMGVIVEDQEIIKAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQN 247 (388)
Q Consensus 168 ~~~~~~~~l~~~~~~~l~~~p~i~~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~ 247 (388)
+..+++.+|++++.++++.+|++.+.+..|+.++.++||++..+..++++++||++++.||++||+|..++..++.+++.
T Consensus 140 ~~~~~~~~~~el~~~aL~~DpdI~e~IraDLaAI~eRDPAciSFL~~~l~~kGf~al~~~Riah~l~~~~~~~la~~i~~ 219 (360)
T PLN02357 140 NLNLPSNTLFDLFIGVLEESPEIIESVKQDLRAVKERDPACISYVHCFLNFKGFLACQAHRIAHKLWTQGRKILALLIQN 219 (360)
T ss_pred CccCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHccCcchhhhhHHHhhCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEE
Q 047635 248 RVSEVFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKI 327 (388)
Q Consensus 248 ~~~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~I 327 (388)
++...++++||+++.||+|++|+|+++++||++++||+||+|+++|+||+.+...+.++++||++|+||+||+|.+|++|
T Consensus 220 ~~~~~f~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~I 299 (360)
T PLN02357 220 RVSEAFAVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITI 299 (360)
T ss_pred HHHHHhceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEE
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred CCCCEECCCCEECCCCCCCcEEEecCcEEeccCCCCccccCCCCccccccccccccCCCcC
Q 047635 328 GDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDHTSHIHEWSDYVI 388 (388)
Q Consensus 328 Gd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~~~~~~~~~dy~~ 388 (388)
|++++||+|++|.+|||++++|+|+|||+++++..+......|+++|||..++.+|+||+|
T Consensus 300 Gdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~ 360 (360)
T PLN02357 300 GEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPIKHDKIPSLTMDQTSHISEWSDYVI 360 (360)
T ss_pred CCCCEECCCCEECcccCCCcEEECCCeEEEccCCCccccccCCCccccchhcccchhhccC
Confidence 9999999999999999999999999999999877665545789999999999999999998
No 2
>PLN02694 serine O-acetyltransferase
Probab=100.00 E-value=1.9e-60 Score=460.30 Aligned_cols=277 Identities=64% Similarity=1.064 Sum_probs=266.7
Q ss_pred cccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHH
Q 047635 112 IDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEII 191 (388)
Q Consensus 112 ~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~ 191 (388)
..+.+++++++|++||+||+..+++||+|++|+++.||+|++|+++|+++||+||.+..+++..|+++|.++|+.+|+++
T Consensus 18 ~~~~~~~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~il~~~~~~~al~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (294)
T PLN02694 18 ATTADEEAAWLWTQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLR 97 (294)
T ss_pred CccccccchHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCcCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHCHHHH
Confidence 44556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcC
Q 047635 192 KAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDH 271 (388)
Q Consensus 192 ~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~ 271 (388)
+.+.+|+.++.+|||+|..+..++++|+||++++.||++||+|..++..++.+++.++...++++||+++.||+|++|+|
T Consensus 98 ~~~~~D~~a~~~rdpa~~~~~~~~l~~~Gf~Al~~yR~ah~l~~~~~~~la~~~~~~~~~~~gvdI~p~A~IG~gv~Idh 177 (294)
T PLN02694 98 AATVADLRAARVRDPACVSFSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALHSRISDVFAVDIHPAAKIGKGILFDH 177 (294)
T ss_pred HHHHHHHHHHHhcCccccchhhhhhcCHhHHHHHHHHHHHHHHHCCChhHHHHHHHhcccceeEEeCCcceecCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEe
Q 047635 272 ATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVG 351 (388)
Q Consensus 272 gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG 351 (388)
+++++||++++||+||+|+++|+||+.+...+.++++||++|+||+|++|+++++||++|+||+|++|++|||++++|+|
T Consensus 178 ~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~v~G 257 (294)
T PLN02694 178 ATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVG 257 (294)
T ss_pred CCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcCCCCcEEEc
Confidence 99999999999999999999999999888778889999999999999999999999999999999999999999999999
Q ss_pred cCcEEeccCCCCccccCCCCccccccccccccCCCcC
Q 047635 352 NPARLIGGKENPFMLDKIPSFTMDHTSHIHEWSDYVI 388 (388)
Q Consensus 352 ~PArvi~~~~~~~~~~~~p~~~~~~~~~~~~~~dy~~ 388 (388)
+|||+++.+.++......|+++|||..++.+|+||+|
T Consensus 258 ~PAkiv~~~~~~~~~~~~p~~~m~~~~~~~~~~~~~~ 294 (294)
T PLN02694 258 NPARLVGGKEKPAKHEECPGESMDHTSFISEWSDYII 294 (294)
T ss_pred cCcEEEccCCCcccccCCcchhhcccccccccccccC
Confidence 9999999877666656789999999999999999997
No 3
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-58 Score=424.06 Aligned_cols=255 Identities=63% Similarity=0.948 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 047635 121 DLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEIIKAVKADLIA 200 (388)
Q Consensus 121 ~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~~~i~~Dl~a 200 (388)
++|.+||+||+..++.||.+++|+++.|++|.++++++++.|+++|.+..++++.+.++|...+..+|.|++.+..|+.+
T Consensus 15 ~iw~kir~ea~~~~e~ep~ls~~ly~~Ils~~~le~~l~~~L~~~l~~~tl~s~~l~~lf~~~~~~d~~i~~s~~~dl~a 94 (269)
T KOG4750|consen 15 MIWTKIREEAKKDAEYEPILSSYLYASILSHLTLERALAFVLANRLNNTTLLSENLGDLFLSVLRADPLIRESVFDDLDA 94 (269)
T ss_pred hhHHHHHHHHHhhhhhchhhhhhHHHHhccHhHHHHHhhHHHHHhhccccccHhhhhhHhHHHhccCHHHHHHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCCcEECCC
Q 047635 201 IKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATGVVVGET 280 (388)
Q Consensus 201 ~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~ 280 (388)
...|||+|.+|...++.++||+++|+||++|.+|.++++.++..++.+++..++|+|||.|.||+|..++|++|++||++
T Consensus 95 ~~~rdPac~dy~s~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~ris~~~gvdihpaa~ig~gilldhatgvvigeT 174 (269)
T KOG4750|consen 95 FKIRDPACIDYGSNILHGKGFLANQAYRIAHNLWTQDRKILALGLQVRISPNFGVDIHPAAKIGKGILLDHATGVVIGET 174 (269)
T ss_pred hccCCcchhhhHHHhHhcccHhhhhHHHhhhhheecCCeeEEEeecceecccccccccchhhcccceeeccccceeecce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccC
Q 047635 281 AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 360 (388)
Q Consensus 281 ~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~ 360 (388)
++||++|+|+|++++|++++..+++||+|||||+||+|++|++||+||+|++|||||+|++|||++++++|+|||+++..
T Consensus 175 Avvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnPAklIg~~ 254 (269)
T KOG4750|consen 175 AVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNPAKLIGKI 254 (269)
T ss_pred eEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCceecCCchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCccccCCCCccccccccc
Q 047635 361 ENPFMLDKIPSFTMDHTSHI 380 (388)
Q Consensus 361 ~~~~~~~~~p~~~~~~~~~~ 380 (388)
. ...|+++|+|.+|+
T Consensus 255 ~-----e~~p~ltm~~~~~~ 269 (269)
T KOG4750|consen 255 D-----EKDPGLTMDHTSFI 269 (269)
T ss_pred c-----ccCCcccccccccC
Confidence 4 56899999999874
No 4
>PLN02739 serine acetyltransferase
Probab=100.00 E-value=3.4e-55 Score=431.25 Aligned_cols=256 Identities=56% Similarity=0.930 Sum_probs=247.3
Q ss_pred CCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHHHHHHH
Q 047635 117 DADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEIIKAVKA 196 (388)
Q Consensus 117 ~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~~~i~~ 196 (388)
...+++|++||+||+..+++||+|++|+++.||+|++|+++|+++||+||.+..+++.+|++++.++|..+|++++.+.+
T Consensus 68 ~~~~~~W~~~r~ea~~~~~~ep~l~~~~~~~il~h~~~~~al~~~la~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T PLN02739 68 SRYDPIWDSIREEAKLEAEEEPVLSSFLYASILSHDCLEQALSFVLANRLQNPTLLATQLMDIFCNVMVHDRGIQSSIRL 147 (355)
T ss_pred cccchHHHHHHHHHHHHHhcCchhHHHHHHHccCCccHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCCcE
Q 047635 197 DLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATGVV 276 (388)
Q Consensus 197 Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtgVv 276 (388)
|+.++.+|||+|..+..++++++||+++++||++||+|..++..++.+++.++...+|++|++++.||+|++|+|+++++
T Consensus 148 Dl~a~~~rDPA~~~~~~~~l~~~Gf~Al~~yRiah~l~~~~~~~la~~l~~~~~~~~GidI~p~A~IG~Gv~IdHg~GVV 227 (355)
T PLN02739 148 DVQAFKDRDPACLSYSSAILHLKGYLALQAYRVAHKLWKQGRKLLALALQSRVSEVFGIDIHPAARIGKGILLDHGTGVV 227 (355)
T ss_pred HHHHHHccCccccCeeeeeeeCccHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHhCcccCCCccccCceEEecCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEE
Q 047635 277 VGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARL 356 (388)
Q Consensus 277 IG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArv 356 (388)
||++++||+||+|+++|+||+++...++++++|||+|+||+||+|+++++||++|+||+|++|++|||++++|+|+|||+
T Consensus 228 IG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAri 307 (355)
T PLN02739 228 IGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKL 307 (355)
T ss_pred ECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCCEE
Confidence 99999999999999999999988887888999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCccccCCCCcccccc
Q 047635 357 IGGKENPFMLDKIPSFTMDHT 377 (388)
Q Consensus 357 i~~~~~~~~~~~~p~~~~~~~ 377 (388)
++... ...|+++|+++
T Consensus 308 I~~~~-----~~~p~~~m~~D 323 (355)
T PLN02739 308 IGFVD-----EQDPSLTMEYD 323 (355)
T ss_pred eccCC-----ccchhhhhhhh
Confidence 98765 56899999875
No 5
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=100.00 E-value=9.1e-52 Score=398.96 Aligned_cols=256 Identities=52% Similarity=0.827 Sum_probs=246.4
Q ss_pred CchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHHHHHHHH
Q 047635 118 ADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEIIKAVKAD 197 (388)
Q Consensus 118 ~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~~~i~~D 197 (388)
..+++|++||+||+..+++||+|++|+++.||+|+.|+.+|+++|+++|.+..++...+++++.+++..+|++.+.+.+|
T Consensus 5 ~~~~~w~~~~~ea~~~~~~ep~l~~~~~~~~l~~~~~~~~L~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~D 84 (273)
T PRK11132 5 ELEIVWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACD 84 (273)
T ss_pred cccHHHHHHHHHHHHHHhcCchhHHHHHHhccCCccHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCCcEE
Q 047635 198 LIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATGVVV 277 (388)
Q Consensus 198 l~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtgVvI 277 (388)
+.+..+|||++.++..+++.++||++++.||+++|+|..++..++.+++..+...++++||+++.||+|++|+|+++++|
T Consensus 85 i~~~~~~dpa~~~~~~pll~~~gf~a~~~yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~givI 164 (273)
T PRK11132 85 IQAVRTRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHATGIVI 164 (273)
T ss_pred HHHHHhcCccccceeEEEEECCChHHHHHHHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 278 GETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 278 G~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
|++++||+||+|+++|+||+++...+.++++||++|+||+||+|+++++||+||+||+|++|++|||++++++|+|||++
T Consensus 165 G~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~PArvi 244 (273)
T PRK11132 165 GETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIV 244 (273)
T ss_pred CCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCcEEe
Confidence 99999999999999999999887777889999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccCCCCccccccc
Q 047635 358 GGKENPFMLDKIPSFTMDHTS 378 (388)
Q Consensus 358 ~~~~~~~~~~~~p~~~~~~~~ 378 (388)
++.. ...|+++|||..
T Consensus 245 ~~~~-----~~~p~~~m~~~~ 260 (273)
T PRK11132 245 GKPE-----SDKPSMDMDQHF 260 (273)
T ss_pred Cccc-----ccCchhhhhhhc
Confidence 8765 568999999975
No 6
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-42 Score=315.27 Aligned_cols=169 Identities=64% Similarity=1.037 Sum_probs=165.4
Q ss_pred HHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCC
Q 047635 193 AVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHA 272 (388)
Q Consensus 193 ~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~g 272 (388)
.+.+|+.+.+++||++..+..++++|++|+++++||++|++|..+++.++++++...+..++++|||+|+||++++|+|+
T Consensus 6 ~~~~di~a~~~~dPa~~~~~~~~l~y~g~ha~~~~R~ah~l~~~~~~~~A~~~~~~~~~~~gieIhp~A~IG~g~fIdHg 85 (194)
T COG1045 6 SAREDIRAVRERDPAARSYLEVLLYYPGFHALWAHRLAHWLWNRGRKLLARLLSSLSRFLFGIEIHPGAKIGRGLFIDHG 85 (194)
T ss_pred HHHHHHHHHhhcCccccchhHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcceeeCCCCeECCceEEcCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEec
Q 047635 273 TGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGN 352 (388)
Q Consensus 273 tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~ 352 (388)
+|++||++++|||||+|++|||||+++...++|||+||+||+||+||+|+||++||+|+.|||||||++|||++++++|.
T Consensus 86 ~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGv 165 (194)
T COG1045 86 TGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGV 165 (194)
T ss_pred ceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCC
Q 047635 353 PARLIGGKE 361 (388)
Q Consensus 353 PArvi~~~~ 361 (388)
|||++++..
T Consensus 166 PArii~~~~ 174 (194)
T COG1045 166 PARVIGRPG 174 (194)
T ss_pred cceEeccCC
Confidence 999998654
No 7
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.97 E-value=2.2e-29 Score=226.58 Aligned_cols=161 Identities=60% Similarity=0.993 Sum_probs=151.2
Q ss_pred HHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCC
Q 047635 195 KADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATG 274 (388)
Q Consensus 195 ~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtg 274 (388)
..|+.++..+||++.+....++..++|+++..||++++++..+...++..+...+...++++|+++++||++++|+|+.+
T Consensus 2 ~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~yR~~~~~~~~~~~~l~~~~~~~~~~~~~~~I~~~~~Ig~~~~i~~~~g 81 (162)
T TIGR01172 2 REDIRAVRERDPAARSYLEVLLYYPGFHALWAYRFAHYLWKRGFKFLARLLSNFIRVLTGVDIHPGARIGRGVFIDHGTG 81 (162)
T ss_pred HHHHHHHHhCCcccCCeEEEEEECchHHHHHHHHHHHHHHHccHHHHHHHHHHHHheeeCeEeCCCCEECCCeEECCCCe
Confidence 57899999999999999999999999999999999999999888888888888888889999999999999999999888
Q ss_pred cEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCc
Q 047635 275 VVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPA 354 (388)
Q Consensus 275 VvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PA 354 (388)
++||++++||+||+|+++|+|++.....+.++++||++|+||++|+|.++++||++|+||++++|.+|||++++++|+||
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G~Pa 161 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVGVPA 161 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEeecC
Confidence 99999999999999999999998755555667999999999999999999999999999999999999999999999999
Q ss_pred E
Q 047635 355 R 355 (388)
Q Consensus 355 r 355 (388)
|
T Consensus 162 r 162 (162)
T TIGR01172 162 R 162 (162)
T ss_pred C
Confidence 6
No 8
>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria [].; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....
Probab=99.85 E-value=1e-21 Score=165.09 Aligned_cols=105 Identities=48% Similarity=0.710 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 047635 122 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEIIKAVKADLIAI 201 (388)
Q Consensus 122 ~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~~~i~~Dl~a~ 201 (388)
||++||+||+..+++||.|++|++..||+|++|+++|+++|+++|.+..++...+.+++.++++.+|+|.+.+..|+.++
T Consensus 1 ~W~~lr~EA~~~~~~eP~La~~l~~~iL~h~s~~~ALa~~La~kL~~~~~~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av 80 (105)
T PF06426_consen 1 LWQQLRAEAEEAAASEPLLASFLHATILSHDSFEDALAFRLANKLADPTLSADQLRDLFRDALEADPEIVEAARADLQAV 80 (105)
T ss_dssp HHHHHHHHHHHHHHH-GGGHHHHHHHTTTSSSHHHHHHHHHHHHH-BTTS-HHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHHhhcccCHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccccccceeeeccchhHHHHH
Q 047635 202 KERDPACISYAHCLLNFKGFLACQA 226 (388)
Q Consensus 202 ~~rDPa~~~~~~~ll~~~gf~al~~ 226 (388)
++|||+|.++..++++||||++++.
T Consensus 81 ~~RDPA~~~~~~~lL~~kGF~AlQa 105 (105)
T PF06426_consen 81 YERDPACPSYLEPLLFFKGFHALQA 105 (105)
T ss_dssp HHHSTT--STHHHHHH-HHHHHHHH
T ss_pred HhCCccccchhHHHHHCccHHHhcC
Confidence 9999999999999999999999874
No 9
>PRK10191 putative acyl transferase; Provisional
Probab=99.82 E-value=1.6e-19 Score=160.36 Aligned_cols=107 Identities=42% Similarity=0.693 Sum_probs=98.5
Q ss_pred ceeeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECC
Q 047635 250 SEVFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGD 329 (388)
Q Consensus 250 ~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd 329 (388)
...+|++|++++.||+++.|+++.+++|++++.||+||+|+++|+||+.+.... ..++|||+|+||++++|.++++||+
T Consensus 37 ~~~~g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~-~~~~IGd~~~Ig~~~~I~~~v~IG~ 115 (146)
T PRK10191 37 ECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNM-ACPHIGNGVELGANVIILGDITIGN 115 (146)
T ss_pred HHHhCcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCC-CCCEECCCcEEcCCCEEeCCCEECC
Confidence 347899999999999999999999999999999999999999999997644322 3579999999999999999999999
Q ss_pred CCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 330 GAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 330 ~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
+++||+|++|.+|+|++++++|.|||+.
T Consensus 116 ~~~Igags~V~~dv~~~~~v~G~pA~~~ 143 (146)
T PRK10191 116 NVTVGAGSVVLDSVPDNALVVGEKARVK 143 (146)
T ss_pred CCEECCCCEECCccCCCcEEEccCcEEE
Confidence 9999999999999999999999999875
No 10
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.79 E-value=5.9e-19 Score=161.49 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCccc--chHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 047635 122 LWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSL--QSGTLFELFMGVIVEDQEIIKAVKADLI 199 (388)
Q Consensus 122 ~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~--~~~~l~~~~~~~l~~~p~i~~~i~~Dl~ 199 (388)
++..+++|+++.+++||++.++++ .+|.+++|++.++||++|.|++..+ .+..+..+.+ +.
T Consensus 3 ~~~~~~~di~a~~~~dPa~~~~~~-~~l~y~g~ha~~~~R~ah~l~~~~~~~~A~~~~~~~~----------------~~ 65 (194)
T COG1045 3 MLGSAREDIRAVRERDPAARSYLE-VLLYYPGFHALWAHRLAHWLWNRGRKLLARLLSSLSR----------------FL 65 (194)
T ss_pred hHHHHHHHHHHHhhcCccccchhH-HHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------hh
Confidence 455889999999999999999876 8999999999999999999987522 1121222211 12
Q ss_pred HHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCCcEECC
Q 047635 200 AIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATGVVVGE 279 (388)
Q Consensus 200 a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~ 279 (388)
.-.+.+|++...... .+.+..|++||++|.||++|.|.| +++||.
T Consensus 66 ~gieIhp~A~IG~g~---------------------------------fIdHg~GvVIgeta~IGddv~I~~--gVTLGg 110 (194)
T COG1045 66 FGIEIHPGAKIGRGL---------------------------------FIDHGTGVVIGETAVIGDDVTIYH--GVTLGG 110 (194)
T ss_pred cceeeCCCCeECCce---------------------------------EEcCCceEEEcceeEECCCeEEEc--ceEecC
Confidence 234455655333222 235577999999999999999999 999998
Q ss_pred C--------cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEE
Q 047635 280 T--------AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKI 327 (388)
Q Consensus 280 ~--------~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~I 327 (388)
+ .+||+||+||.|++|.+ +++||||+.||+||+|+.+|--
T Consensus 111 tg~~~g~RhPtIg~~V~IGagAkILG--------~I~IGd~akIGA~sVVlkdVP~ 158 (194)
T COG1045 111 TGKESGKRHPTIGNGVYIGAGAKILG--------NIEIGDNAKIGAGSVVLKDVPP 158 (194)
T ss_pred CCCcCCCCCCccCCCeEECCCCEEEc--------ceEECCCCEECCCceEccCCCC
Confidence 6 59999999999999987 7999999999999999998543
No 11
>PRK10502 putative acyl transferase; Provisional
Probab=99.78 E-value=4.2e-18 Score=156.05 Aligned_cols=57 Identities=35% Similarity=0.514 Sum_probs=54.2
Q ss_pred CCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCC
Q 047635 305 RHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 305 ~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~ 361 (388)
.+++|||+|+||++|+|.++++||++++||++++|.+|+|++++++|+|||+++++.
T Consensus 123 ~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r~ 179 (182)
T PRK10502 123 APIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPRV 179 (182)
T ss_pred CCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEecccc
Confidence 457999999999999999999999999999999999999999999999999998764
No 12
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.77 E-value=4.1e-18 Score=156.55 Aligned_cols=106 Identities=29% Similarity=0.423 Sum_probs=84.6
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEECCCc--EECCCcEEcCCCEECCCCccC----------CCCCCEECCCcEEccCC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVVGETA--VIGDNVSILHNVTLGGTGKMS----------GDRHPKIGNGVLVGAGT 319 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~--~IGdnV~Ig~gvtIgg~~~i~----------g~~~~~IGd~V~IGaga 319 (388)
.+.+++|.+..||++++|+. +++|++.+ +||++|.|+++|+|....+.. -..+++||++|+||++|
T Consensus 65 ~~~~~~g~~i~iG~~~~in~--~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a 142 (183)
T PRK10092 65 TFRCDYGYNIFLGNNFYANF--DCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRA 142 (183)
T ss_pred CEEEeecCCcEEcCCcEECC--ceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCC
Confidence 45566777777777777766 66666654 677777777777775322211 12468999999999999
Q ss_pred EECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 320 CILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 320 ~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
+|.++++||++|+||+|++|.+|||++++++|+|||++++
T Consensus 143 ~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~ 182 (183)
T PRK10092 143 VINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred EECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence 9999999999999999999999999999999999999874
No 13
>PLN02694 serine O-acetyltransferase
Probab=99.77 E-value=1.1e-18 Score=169.74 Aligned_cols=175 Identities=22% Similarity=0.218 Sum_probs=129.9
Q ss_pred ccCcccccccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCccc--chH
Q 047635 97 PFNRNQEQAIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSL--QSG 174 (388)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~--~~~ 174 (388)
-+.....+....++++.++....+.+++.+++|+++..++||++.++++ .+|.+++|++.++||+||+||.... ++.
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~a~~~rdpa~~~~~~-~~l~~~Gf~Al~~yR~ah~l~~~~~~~la~ 149 (294)
T PLN02694 71 KLCSSTLLSTLLYDLFLNTFSSDPSLRAATVADLRAARVRDPACVSFSH-CLLNYKGFLACQAHRVAHKLWTQSRRPLAL 149 (294)
T ss_pred HhCCCcCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCccccchhh-hhhcCHhHHHHHHHHHHHHHHHCCChhHHH
Confidence 3444455555677778888889999999999999999999999999988 8999999999999999999997533 111
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeee
Q 047635 175 TLFELFMGVIVEDQEIIKAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFS 254 (388)
Q Consensus 175 ~l~~~~~~~l~~~p~i~~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~g 254 (388)
.++..+...+ -.+.+|.+......+ +....+
T Consensus 150 ~~~~~~~~~~----------------gvdI~p~A~IG~gv~---------------------------------Idh~tG 180 (294)
T PLN02694 150 ALHSRISDVF----------------AVDIHPAAKIGKGIL---------------------------------FDHATG 180 (294)
T ss_pred HHHHhcccce----------------eEEeCCcceecCCEE---------------------------------EeCCCC
Confidence 1222111100 112333332211111 222357
Q ss_pred eEecCCcEECCceEEcCCCCcEECC--------CcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcE
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGE--------TAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~--------~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
++||+++.||++|.|.+ ++++|. +++||++|.||.|++|.+ +++||++|.||+|++|.++
T Consensus 181 VVIGe~a~IGdnv~I~~--~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilg--------gi~IGd~a~IGAgSVV~kd-- 248 (294)
T PLN02694 181 VVIGETAVIGNNVSILH--HVTLGGTGKACGDRHPKIGDGVLIGAGATILG--------NVKIGEGAKIGAGSVVLID-- 248 (294)
T ss_pred eEECCCcEECCCCEEee--cceeCCcccccCCCccEECCCeEECCeeEECC--------CCEECCCCEECCCCEECCc--
Confidence 99999999999999998 889985 479999999999999976 6899999999999999986
Q ss_pred ECCCCEE
Q 047635 327 IGDGAKI 333 (388)
Q Consensus 327 IGd~v~I 333 (388)
|.+++++
T Consensus 249 VP~~~~v 255 (294)
T PLN02694 249 VPPRTTA 255 (294)
T ss_pred CCCCcEE
Confidence 5555544
No 14
>PLN02739 serine acetyltransferase
Probab=99.77 E-value=3.6e-18 Score=169.21 Aligned_cols=184 Identities=20% Similarity=0.153 Sum_probs=135.3
Q ss_pred ccCcccccccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCccc--chH
Q 047635 97 PFNRNQEQAIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSL--QSG 174 (388)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~--~~~ 174 (388)
-+.....+....++.+.++....+.||+.+++|+++..++||+..++++ .+|.+++|++.+.||+||+||.... ++.
T Consensus 116 kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~a~~~rDPA~~~~~~-~~l~~~Gf~Al~~yRiah~l~~~~~~~la~ 194 (355)
T PLN02739 116 RLQNPTLLATQLMDIFCNVMVHDRGIQSSIRLDVQAFKDRDPACLSYSS-AILHLKGYLALQAYRVAHKLWKQGRKLLAL 194 (355)
T ss_pred HhCCCcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHccCccccCeee-eeeeCccHHHHHHHHHHHHHHHCCChHHHH
Confidence 3444555556667778888888899999999999999999999999987 8899999999999999999986432 122
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeee
Q 047635 175 TLFELFMGVIVEDQEIIKAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFS 254 (388)
Q Consensus 175 ~l~~~~~~~l~~~p~i~~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~g 254 (388)
.|+..+.. ..-.+..|.+...... .+.+..+
T Consensus 195 ~l~~~~~~----------------~~GidI~p~A~IG~Gv---------------------------------~IdHg~G 225 (355)
T PLN02739 195 ALQSRVSE----------------VFGIDIHPAARIGKGI---------------------------------LLDHGTG 225 (355)
T ss_pred HHHHHHHH----------------HhCcccCCCccccCce---------------------------------EEecCCc
Confidence 22221111 1112223333211111 1223458
Q ss_pred eEecCCcEECCceEEcCCCCcEECC--------CcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcE
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGE--------TAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~--------~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
++||++++||++|.|.+ +++||. .++||++|.||.|++|.+ +++||+++.||+|++|.++
T Consensus 226 VVIG~~avIGdnv~I~~--gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG--------~V~IGd~aiIGAGSVV~kD-- 293 (355)
T PLN02739 226 VVIGETAVIGDRVSILH--GVTLGGTGKETGDRHPKIGDGALLGACVTILG--------NISIGAGAMVAAGSLVLKD-- 293 (355)
T ss_pred eEECCCCEECCCCEEcC--CceeCCcCCcCCCCCcEECCCCEEcCCCEEeC--------CeEECCCCEECCCCEECCC--
Confidence 99999999999999998 899985 489999999999999977 7999999999999999987
Q ss_pred ECCCC-EECCCCEECCC
Q 047635 327 IGDGA-KIGAGSVVLKD 342 (388)
Q Consensus 327 IGd~v-~IGagsVV~~d 342 (388)
|.+++ ++|.-+.+.+.
T Consensus 294 VP~~stvvG~PAriI~~ 310 (355)
T PLN02739 294 VPSHSMVAGNPAKLIGF 310 (355)
T ss_pred CCCCcEEEecCCEEecc
Confidence 45555 44555555444
No 15
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.77 E-value=4.5e-18 Score=158.67 Aligned_cols=108 Identities=38% Similarity=0.520 Sum_probs=86.2
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEE--CCCcEECCCcEEcCCCEECCCCcc----------CCCCCCEECCCcEEccCC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVV--GETAVIGDNVSILHNVTLGGTGKM----------SGDRHPKIGNGVLVGAGT 319 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvI--G~~~~IGdnV~Ig~gvtIgg~~~i----------~g~~~~~IGd~V~IGaga 319 (388)
.+.++.|.++.||++++|+. +++| +..+.||++|.|+++|+|...+.. ...+.++||++|+||+++
T Consensus 67 ~~~~~~g~ni~IG~~v~In~--~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~ 144 (203)
T PRK09527 67 PVYFSYGSNIHIGRNFYANF--NLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHV 144 (203)
T ss_pred CEEEeeCCCcEEcCCcEECC--CcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCC
Confidence 34455677788888888876 5555 334777888888888877643221 112358999999999999
Q ss_pred EECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCC
Q 047635 320 CILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 320 ~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~ 361 (388)
+|.++++||++|+||+||+|.+|||++++++|+|||++++..
T Consensus 145 ~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 145 VINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred EEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence 999999999999999999999999999999999999998764
No 16
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.74 E-value=1.5e-17 Score=150.39 Aligned_cols=104 Identities=34% Similarity=0.493 Sum_probs=71.2
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECC---C-CccCCCCCCEECCCcEEccCCEECCCcEECC
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGG---T-GKMSGDRHPKIGNGVLVGAGTCILGNIKIGD 329 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg---~-~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd 329 (388)
++.||+++.|+.++.|....+++||+++.||++|+|..+..-.. . .......+++||++|+||++|+|+++++||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 34455555555555444333455555555555555532211000 0 0001123689999999999999999999999
Q ss_pred CCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 330 GAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 330 ~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
+|+||+||+|.+|||++++++|+|||++
T Consensus 142 ~~~VgagavV~~~vp~~~vv~G~PAkvi 169 (169)
T cd03357 142 NSVIGAGSVVTKDIPANVVAAGNPARVI 169 (169)
T ss_pred CCEECCCCEEccccCCCcEEEccccEEC
Confidence 9999999999999999999999999985
No 17
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.72 E-value=2.4e-17 Score=150.12 Aligned_cols=104 Identities=42% Similarity=0.613 Sum_probs=76.6
Q ss_pred CCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCcc-----------CCCCCCEECCCcEEccCCEECCCcEE
Q 047635 259 PGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKM-----------SGDRHPKIGNGVLVGAGTCILGNIKI 327 (388)
Q Consensus 259 ~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i-----------~g~~~~~IGd~V~IGaga~Ilg~V~I 327 (388)
....+|+++.+..+..+..++..+||+++.++++|+|...+.. .....++||++||||+||+|+++|+|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 4555555555555443344455555555555555555442221 11346999999999999999999999
Q ss_pred CCCCEECCCCEECCCCCCCcEEEecCcEEeccCCC
Q 047635 328 GDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKEN 362 (388)
Q Consensus 328 Gd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~ 362 (388)
|+|++||+||||++|+|++++++|+|||+++++..
T Consensus 146 G~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~~ 180 (190)
T COG0110 146 GEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRDV 180 (190)
T ss_pred CCCcEEeeCCEEeCccCCCeEEeCCcceEEEecch
Confidence 99999999999999999999999999999987654
No 18
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.72 E-value=6.9e-17 Score=135.40 Aligned_cols=105 Identities=28% Similarity=0.379 Sum_probs=84.5
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEEC-CCCccCCCCCCEECCCcEEccCCEECCCcEECCCC
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLG-GTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGA 331 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIg-g~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v 331 (388)
+.+.||+++.|++++.|.....++||+++.|+++|+|..+.+-. ..........++||++|+||+++.|.++++||++|
T Consensus 2 ~~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~ 81 (107)
T cd05825 2 WNLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGA 81 (107)
T ss_pred ceEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCC
Confidence 46789999999999999865578888888888888775432110 00001112468999999999999999999999999
Q ss_pred EECCCCEECCCCCCCcEEEecCcEEe
Q 047635 332 KIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 332 ~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
+||++++|.+|+|++++++|+|||++
T Consensus 82 ~i~~gs~v~~~~~~~~~~~G~Pa~~~ 107 (107)
T cd05825 82 VVGARSVVVRDLPAWTVYAGNPAVPV 107 (107)
T ss_pred EECCCCEEeCcCCCCCEEECCccEeC
Confidence 99999999999999999999999974
No 19
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.72 E-value=1.7e-16 Score=146.57 Aligned_cols=56 Identities=39% Similarity=0.648 Sum_probs=53.9
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~ 361 (388)
.++||++|+||++++|.++++||++|+||++++|.+++|++++++|+||++++++.
T Consensus 130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~~ 185 (192)
T PRK09677 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYN 185 (192)
T ss_pred CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEeccC
Confidence 47899999999999999999999999999999999999999999999999998765
No 20
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.69 E-value=1.4e-16 Score=141.24 Aligned_cols=106 Identities=30% Similarity=0.378 Sum_probs=83.6
Q ss_pred eEecCCcEECC-ceEEcCCCCcEECCCcEECCCcEEcCC-CEECC-----------CC--------ccCCCCCCEECCCc
Q 047635 255 VDIHPGAKIGR-GLLFDHATGVVVGETAVIGDNVSILHN-VTLGG-----------TG--------KMSGDRHPKIGNGV 313 (388)
Q Consensus 255 V~Ig~~a~IG~-gv~I~~gtgVvIG~~~~IGdnV~Ig~g-vtIgg-----------~~--------~i~g~~~~~IGd~V 313 (388)
+.||.++.|+. ++.+.. ..++||++|.||.+|.|..+ .+-.. .. ......+++||++|
T Consensus 2 ~~iG~~s~i~~~~~~~~~-~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 80 (145)
T cd03349 2 ISVGDYSYGSGPDCDVGG-DKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV 80 (145)
T ss_pred EEEeCceeeCCCCceEeC-CCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence 56888888888 555553 46888888888888888665 21110 00 01113468999999
Q ss_pred EEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCC
Q 047635 314 LVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 314 ~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~ 361 (388)
+||++++|+++++||++|+||++++|.+|+|++++++|+||++++++.
T Consensus 81 ~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~ 128 (145)
T cd03349 81 WIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRF 128 (145)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhC
Confidence 999999999999999999999999999999999999999999998654
No 21
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.69 E-value=3.8e-16 Score=129.12 Aligned_cols=100 Identities=65% Similarity=1.088 Sum_probs=93.1
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
|+.|+++++||++++|+++.+++||+++.||++|.|++++.|+........++++||++++|+.++.+.++++||++|+|
T Consensus 2 ~~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i 81 (101)
T cd03354 2 GIDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKI 81 (101)
T ss_pred ceEeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEE
Confidence 68899999999999999877899999999999999999999998776434457899999999999999999999999999
Q ss_pred CCCCEECCCCCCCcEEEecC
Q 047635 334 GAGSVVLKDVPPRTTAVGNP 353 (388)
Q Consensus 334 GagsVV~~dVp~~s~VvG~P 353 (388)
+++++|.+++|++.++.|+|
T Consensus 82 ~~~~~i~~~~~~~~~~~G~P 101 (101)
T cd03354 82 GANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred CCCCEECcccCCCCEEEeCC
Confidence 99999999999999999998
No 22
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.69 E-value=1.7e-16 Score=150.85 Aligned_cols=57 Identities=39% Similarity=0.712 Sum_probs=54.6
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKEN 362 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~ 362 (388)
.++||++|+||++++|..+++||++++|++|++|.+|+|++++++|+|||+++++..
T Consensus 160 ~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~~~ 216 (231)
T TIGR03532 160 PVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVDE 216 (231)
T ss_pred CeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccCCh
Confidence 579999999999999999999999999999999999999999999999999998764
No 23
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.68 E-value=3.3e-16 Score=132.02 Aligned_cols=104 Identities=38% Similarity=0.503 Sum_probs=83.3
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccC-------CCCCCEECCCcEEccCCEECCCc
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMS-------GDRHPKIGNGVLVGAGTCILGNI 325 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~-------g~~~~~IGd~V~IGaga~Ilg~V 325 (388)
.++.|++++.||+++.|+. ++.|+++++||++|.|++++.+.+..... ...+++||++|+||++++|..++
T Consensus 9 ~~~~i~~~~~Ig~~~~I~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~ 86 (119)
T cd03358 9 TNVFIENDVKIGDNVKIQS--NVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATILPGV 86 (119)
T ss_pred CCcEECCCcEECCCcEECC--CcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEeCCc
Confidence 3455677777777777765 67777777777777777777775421111 12468999999999999999999
Q ss_pred EECCCCEECCCCEECCCCCCCcEEEecCcEEec
Q 047635 326 KIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIG 358 (388)
Q Consensus 326 ~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~ 358 (388)
.||+++.|+++++|.+++|+++++.|+|||+++
T Consensus 87 ~ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~~ 119 (119)
T cd03358 87 TIGEYALVGAGAVVTKDVPPYALVVGNPARIIG 119 (119)
T ss_pred EECCCCEEccCCEEeCcCCCCeEEecCcceecC
Confidence 999999999999999999999999999999864
No 24
>PLN02357 serine acetyltransferase
Probab=99.68 E-value=1.8e-16 Score=158.21 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=130.4
Q ss_pred cCcccccccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCccc--chHH
Q 047635 98 FNRNQEQAIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSL--QSGT 175 (388)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~--~~~~ 175 (388)
+.....+....++.+.++...++++++.++.|+++..++||+..+|++ .+|.+++|++.++||+||+||.... .+..
T Consensus 138 l~~~~~~~~~~~el~~~aL~~DpdI~e~IraDLaAI~eRDPAciSFL~-~~l~~kGf~al~~~Riah~l~~~~~~~la~~ 216 (360)
T PLN02357 138 LSNLNLPSNTLFDLFIGVLEESPEIIESVKQDLRAVKERDPACISYVH-CFLNFKGFLACQAHRIAHKLWTQGRKILALL 216 (360)
T ss_pred hCCccCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHccCcchhhhhH-HHhhCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555556666677777889999999999999999999999997 7899999999999999999996532 1111
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeee
Q 047635 176 LFELFMGVIVEDQEIIKAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSV 255 (388)
Q Consensus 176 l~~~~~~~l~~~p~i~~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV 255 (388)
++..+.. ....+..|.+......+ +....++
T Consensus 217 i~~~~~~----------------~f~vdI~p~a~IG~Gv~---------------------------------Idh~~gi 247 (360)
T PLN02357 217 IQNRVSE----------------AFAVDIHPGAKIGQGIL---------------------------------LDHATGV 247 (360)
T ss_pred HHHHHHH----------------HhceeeCCCCEECCCeE---------------------------------ECCCCce
Confidence 1111111 11123334432221111 1223478
Q ss_pred EecCCcEECCceEEcCCCCcEECCC--------cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEE
Q 047635 256 DIHPGAKIGRGLLFDHATGVVVGET--------AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKI 327 (388)
Q Consensus 256 ~Ig~~a~IG~gv~I~~gtgVvIG~~--------~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~I 327 (388)
.||++++||++|.|.+ +++||.. ++||++|.||.|++|.+ +++||+++.||+|++|.++ |
T Consensus 248 VIGe~avIGdnV~I~~--gVtIGg~g~~~g~~~piIGd~V~IGagA~Ilg--------gV~IGdga~IGAgSVV~~d--V 315 (360)
T PLN02357 248 VIGETAVVGNNVSILH--NVTLGGTGKQSGDRHPKIGDGVLIGAGTCILG--------NITIGEGAKIGAGSVVLKD--V 315 (360)
T ss_pred EECCCCEECCCCEEeC--CceecCccccCCccCceeCCCeEECCceEEEC--------CeEECCCCEECCCCEECcc--c
Confidence 8999999999999998 8999864 88999999999998865 6899999999999999987 3
Q ss_pred CCCC-EECCCCEEC
Q 047635 328 GDGA-KIGAGSVVL 340 (388)
Q Consensus 328 Gd~v-~IGagsVV~ 340 (388)
.+++ ++|.-+.+.
T Consensus 316 P~~~~v~G~PArvv 329 (360)
T PLN02357 316 PPRTTAVGNPARLI 329 (360)
T ss_pred CCCcEEECCCeEEE
Confidence 4444 445554443
No 25
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.68 E-value=2e-16 Score=147.75 Aligned_cols=121 Identities=32% Similarity=0.493 Sum_probs=86.3
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCC-----------cEECCCcEEcCCCEECCCCccC--------------------
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGET-----------AVIGDNVSILHNVTLGGTGKMS-------------------- 302 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~-----------~~IGdnV~Ig~gvtIgg~~~i~-------------------- 302 (388)
++.||+++.||+++.|.+ ++||++ +.||++|.|+++++|+......
T Consensus 19 ~~~IG~~~~Ig~~a~I~~---s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~ 95 (204)
T TIGR03308 19 ESKLGRYTEIGERTRLRE---VALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDAS 95 (204)
T ss_pred ccEeCCCcEECCCcEEeC---CEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccc
Confidence 456777777777776653 344433 3455666666666665321100
Q ss_pred ---------CCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCCCCccccCCCCcc
Q 047635 303 ---------GDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPSFT 373 (388)
Q Consensus 303 ---------g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~~~~~~~~p~~~ 373 (388)
...+++||++|+||.+++|..+++||++++||+|++|.+|||++++++|+||++++++. +...
T Consensus 96 ~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~~--------~~~~ 167 (204)
T TIGR03308 96 DDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRRF--------PPEI 167 (204)
T ss_pred ccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhcC--------CHHH
Confidence 12478999999999999999999999999999999999999999999999999987542 2222
Q ss_pred ccccccccccCCC
Q 047635 374 MDHTSHIHEWSDY 386 (388)
Q Consensus 374 ~~~~~~~~~~~dy 386 (388)
..+..- .+||||
T Consensus 168 ~~~l~~-~~ww~~ 179 (204)
T TIGR03308 168 AARIEA-LAWWDW 179 (204)
T ss_pred HHHHHh-ccccCC
Confidence 333322 369987
No 26
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.66 E-value=2.8e-16 Score=152.37 Aligned_cols=167 Identities=17% Similarity=0.219 Sum_probs=120.7
Q ss_pred ccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHh
Q 047635 105 AIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVI 184 (388)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l 184 (388)
....++++.++....+.+++.+++|+.+..++||++.++++ ++|.+++|.+...||++++|+........ .+
T Consensus 60 ~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~-pll~~~gf~a~~~yR~a~~l~~~~~~~la---~~---- 131 (273)
T PRK11132 60 AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYST-PLLYLKGFHALQAYRIGHWLWNQGRRALA---IY---- 131 (273)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeE-EEEECCChHHHHHHHHHHHHHHCCCchhh---hh----
Confidence 33444555666678889999999999999999999999887 89999999999999999999864321100 00
Q ss_pred hhcHHHHHHHHHHH--HHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcE
Q 047635 185 VEDQEIIKAVKADL--IAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAK 262 (388)
Q Consensus 185 ~~~p~i~~~i~~Dl--~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~ 262 (388)
+.... ..-.+..|.+...... .+.+..++.||++++
T Consensus 132 ---------~~~~~~~~~gidI~~~a~IG~g~---------------------------------~I~h~~givIG~~a~ 169 (273)
T PRK11132 132 ---------LQNQISVAFQVDIHPAAKIGRGI---------------------------------MLDHATGIVIGETAV 169 (273)
T ss_pred ---------hhhcceeeeeeEecCcceECCCe---------------------------------EEcCCCCeEECCCCE
Confidence 00000 0011111222111111 122345789999999
Q ss_pred ECCceEEcCCCCcEECC--------CcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 263 IGRGLLFDHATGVVVGE--------TAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 263 IG~gv~I~~gtgVvIG~--------~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
||++|.|.+ +++||. .++||++|.||.|++|.+ +++||+||.||+|++|.++ |.+++++
T Consensus 170 IGdnv~I~~--~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilg--------gv~IG~~a~IGAgSvV~~d--Vp~~~~v 236 (273)
T PRK11132 170 IENDVSILQ--SVTLGGTGKTSGDRHPKIREGVMIGAGAKILG--------NIEVGRGAKIGAGSVVLQP--VPPHTTA 236 (273)
T ss_pred ECCCCEEcC--CcEEecCcccCCCcCCEECCCcEEcCCCEEcC--------CCEECCCCEECCCCEECcc--cCCCcEE
Confidence 999999998 899986 369999999999999987 7999999999999999986 6666644
No 27
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.66 E-value=1.2e-16 Score=148.54 Aligned_cols=169 Identities=22% Similarity=0.215 Sum_probs=131.5
Q ss_pred cccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCc--ccchHHHHHHHHHHhhhcHH
Q 047635 112 IDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSL--SLQSGTLFELFMGVIVEDQE 189 (388)
Q Consensus 112 ~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~--~~~~~~l~~~~~~~l~~~p~ 189 (388)
+......++.+...++.|.++...+||++-+|-. .+|..++|.+..+||+||+||.. +..+-.++..+.+.+
T Consensus 74 f~~~~~~d~~i~~s~~~dl~a~~~rdPac~dy~s-~~l~~kgF~A~Qa~RiaH~Lw~~~rk~lal~~q~ris~~~----- 147 (269)
T KOG4750|consen 74 FLSVLRADPLIRESVFDDLDAFKIRDPACIDYGS-NILHGKGFLANQAYRIAHNLWTQDRKILALGLQVRISPNF----- 147 (269)
T ss_pred hHHHhccCHHHHHHHHHhhhhhccCCcchhhhHH-HhHhcccHhhhhHHHhhhhheecCCeeEEEeecceecccc-----
Confidence 4444556778999999999999999999999876 89999999999999999999986 333434444444333
Q ss_pred HHHHHHHHHHHHhhcCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEE
Q 047635 190 IIKAVKADLIAIKERDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLF 269 (388)
Q Consensus 190 i~~~i~~Dl~a~~~rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I 269 (388)
..+.+|++......+ ..+..|++||++|.||+++.|
T Consensus 148 -----------gvdihpaa~ig~gil---------------------------------ldhatgvvigeTAvvg~~vSi 183 (269)
T KOG4750|consen 148 -----------GVDIHPAAKIGKGIL---------------------------------LDHATGVVIGETAVVGDNVSI 183 (269)
T ss_pred -----------cccccchhhccccee---------------------------------eccccceeecceeEeccceee
Confidence 345667764443333 245789999999999999999
Q ss_pred cCCCCcEECCC--------cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECC
Q 047635 270 DHATGVVVGET--------AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 270 ~~gtgVvIG~~--------~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~ 341 (388)
.| ++++|.+ ..|||||.||.|++|.+ +++||+|++||+|++|+.+|- .+...+|.-+-+..
T Consensus 184 lH--~Vtlggtgk~~gdrhP~Igd~vliGaGvtILg--------nV~IGegavIaAGsvV~kDVP-~~~~AvGnPAklIg 252 (269)
T KOG4750|consen 184 LH--PVTLGGTGKGSGDRHPKIGDNVLIGAGVTILG--------NVTIGEGAVIAAGSVVLKDVP-PNTLAVGNPAKLIG 252 (269)
T ss_pred ec--ceeeccccccccccCCcccCCeEEccccEEeC--------CeeECCCcEEeccceEEeccC-CCceecCCchhhcc
Confidence 99 8888875 58999999999999987 699999999999999998743 23334555554443
No 28
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.64 E-value=5.7e-16 Score=149.65 Aligned_cols=106 Identities=27% Similarity=0.404 Sum_probs=88.6
Q ss_pred eeEecCCcEECCceEEcCCC-----CcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEECCC
Q 047635 254 SVDIHPGAKIGRGLLFDHAT-----GVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGN 324 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gt-----gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~ 324 (388)
.+.||+++.|++++.|..++ .++||+++.|+.++.|+++|.||.+..+.. ..+++|||+|+||+++.|.++
T Consensus 80 ~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~ 159 (262)
T PRK05289 80 RLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF 159 (262)
T ss_pred eEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCC
Confidence 57788888888888887643 467888887777777777777766554433 247899999999999999999
Q ss_pred cEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 325 IKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 325 V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
++||++++||++|+|.+|||+++++.|+||++.+.
T Consensus 160 v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~~~ 194 (262)
T PRK05289 160 VRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGL 194 (262)
T ss_pred CEECCCCEEeeecceeccCCCCeEEecccCeEecc
Confidence 99999999999999999999999999999999753
No 29
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.64 E-value=8e-16 Score=138.77 Aligned_cols=124 Identities=21% Similarity=0.302 Sum_probs=95.4
Q ss_pred eeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEcCC----------CEECCCCccCCC---CCCEECCCcEEccC
Q 047635 253 FSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSILHN----------VTLGGTGKMSGD---RHPKIGNGVLVGAG 318 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig~g----------vtIgg~~~i~g~---~~~~IGd~V~IGag 318 (388)
..+.||+++.|++++.|... ..++||+++.|+++|+|.+. +.||++..+... .+++|||+|+||++
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~ 95 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESK 95 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCC
Confidence 45778888888888877642 35788888888888888654 456665443321 24899999999999
Q ss_pred CEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCCCCccccCCCCcccccccccccc
Q 047635 319 TCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDHTSHIHEW 383 (388)
Q Consensus 319 a~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~~~~~~~~ 383 (388)
|+|+++++||++|+||++++|.++ +|+++++.|+|+...-. ...|+...+|-+++++|
T Consensus 96 a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~-------~~~~~~~~~~~~~~~~~ 155 (164)
T cd04646 96 SFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ-------TDRPKPQTLQLDFLRKI 155 (164)
T ss_pred CEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec-------CCCchhHHHHHHHHHHH
Confidence 999999999999999999999999 89999999999865532 23455566676666665
No 30
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.64 E-value=1.4e-15 Score=141.17 Aligned_cols=110 Identities=23% Similarity=0.294 Sum_probs=82.2
Q ss_pred eeeeEecCCcEECCceEEcCCC-CcEECCCcEECCCcEEcCC----CEECCCCccCCC---CCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHAT-GVVVGETAVIGDNVSILHN----VTLGGTGKMSGD---RHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gt-gVvIG~~~~IGdnV~Ig~g----vtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg 323 (388)
...+.||+++.|+.++.|.... .++||+++.||++|.|... +.|+.++.+... .+++||++|+||.+++|+.
T Consensus 26 ~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V~~ 105 (196)
T PRK13627 26 IGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105 (196)
T ss_pred ECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCccCC
Confidence 3446677777777777775421 3567777777777766321 233333332221 2579999999999999999
Q ss_pred CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCC
Q 047635 324 NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~ 361 (388)
+++||++++|++||+|.+++ |++++++|+|||+++...
T Consensus 106 g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~ 145 (196)
T PRK13627 106 GAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVS 145 (196)
T ss_pred CcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCC
Confidence 99999999999999999986 999999999999998754
No 31
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.63 E-value=5e-16 Score=149.72 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=78.5
Q ss_pred eeEecCCcEECCceEEcCCC----CcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEECCCc
Q 047635 254 SVDIHPGAKIGRGLLFDHAT----GVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGNI 325 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gt----gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~V 325 (388)
.+.||.++.|++++.|..++ .++||+++.|.+++.|+++|.||++..+.. ..+++|||+|+||+++.|.+++
T Consensus 77 ~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~ 156 (255)
T PRK12461 77 RLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFC 156 (255)
T ss_pred eeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCC
Confidence 46677777777777776532 345555544444444444444443332221 1379999999999999999999
Q ss_pred EECCCCEECCCCEECCCCCCCcEEEecCcEEeccC
Q 047635 326 KIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 360 (388)
Q Consensus 326 ~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~ 360 (388)
+||++++|+++++|.+|||+++++.|+||++.+-.
T Consensus 157 ~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~~~~n 191 (255)
T PRK12461 157 RIGALAMMAGGSRISKDVPPYCMMAGHPTNVHGLN 191 (255)
T ss_pred EECCCcEECCCceEeccCCCCeEEecCcceEeccc
Confidence 99999999999999999999999999999985443
No 32
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.62 E-value=1.3e-15 Score=151.44 Aligned_cols=113 Identities=30% Similarity=0.410 Sum_probs=92.5
Q ss_pred eeeEecCCcEECCceEEcCCC--CcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEECCCcE
Q 047635 253 FSVDIHPGAKIGRGLLFDHAT--GVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gt--gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
..+.|+.++.||.|+.|+.++ +++||+++.|++.|.|+++|.||.++.+.+ ..+++||++|+||.++.|.++++
T Consensus 194 G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~ 273 (324)
T TIGR01853 194 GRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLE 273 (324)
T ss_pred ceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCE
Confidence 357788888888888887532 467777777777777777777766655543 24689999999999999999999
Q ss_pred ECCCCEECCCCEECCCCCCCcEEEecCcEEeccCCCCcc
Q 047635 327 IGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPFM 365 (388)
Q Consensus 327 IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~~~~ 365 (388)
||++|+||++++|++|+|+++++.|+||+.++++.+...
T Consensus 274 Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~~~~~~ 312 (324)
T TIGR01853 274 IGDNVTIGAKSGVTKSIPPPGVYGGIPARPNKEWLRIAA 312 (324)
T ss_pred ECCCCEEccCCEeCCcCCCCcEEEccCccHHHHHHHHHH
Confidence 999999999999999999999999999999988765443
No 33
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.62 E-value=9.2e-16 Score=139.05 Aligned_cols=111 Identities=30% Similarity=0.507 Sum_probs=84.7
Q ss_pred ccceeeeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEE----------cCCCEECCCCccCCCCCCEECCCcEEc
Q 047635 248 RVSEVFSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSI----------LHNVTLGGTGKMSGDRHPKIGNGVLVG 316 (388)
Q Consensus 248 ~~~~~~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~I----------g~gvtIgg~~~i~g~~~~~IGd~V~IG 316 (388)
.......|.|+.++.|+.++.|... ..+.||+++.|.|||+| |++|+||-...+- .++||++|+||
T Consensus 23 ~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivH---Gc~Ig~~~lIG 99 (176)
T COG0663 23 SATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVH---GCTIGDNVLIG 99 (176)
T ss_pred CCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEE---EeEECCCcEEe
Confidence 3344566778888888877777553 36778877766666543 3333333322222 38999999999
Q ss_pred cCCEECCCcEECCCCEECCCCEECC--CCCCCcEEEecCcEEeccCC
Q 047635 317 AGTCILGNIKIGDGAKIGAGSVVLK--DVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 317 aga~Ilg~V~IGd~v~IGagsVV~~--dVp~~s~VvG~PArvi~~~~ 361 (388)
-||+|+.+++||++|+|||||+|++ .+|++++++|.|||+++...
T Consensus 100 mgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~ 146 (176)
T COG0663 100 MGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLD 146 (176)
T ss_pred cCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCC
Confidence 9999999999999999999999997 58999999999999998755
No 34
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.61 E-value=4.5e-15 Score=132.97 Aligned_cols=48 Identities=52% Similarity=0.895 Sum_probs=46.8
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNP 353 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~P 353 (388)
+++||++|+||.+++|.++++||++++||++++|.+++|++++++|+|
T Consensus 150 ~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 150 GVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999998
No 35
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.61 E-value=6.6e-15 Score=128.82 Aligned_cols=99 Identities=27% Similarity=0.434 Sum_probs=73.7
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
++.+..++.||+++.|.+ +++|+.+++||++|.|+.+++|++........+++||++|+||++++|.++++||+++.|
T Consensus 25 ~~~i~~~~~IG~~~~I~~--~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~I 102 (139)
T cd03350 25 PSYVNIGAYVDEGTMVDS--WATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVL 102 (139)
T ss_pred CCEEccCCEECCCeEEcC--CCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEE
Confidence 344555555666666655 566666777777777777777765322222246899999999999999999999999999
Q ss_pred CCCCEEC---------------CCCCCC-cEEEecCc
Q 047635 334 GAGSVVL---------------KDVPPR-TTAVGNPA 354 (388)
Q Consensus 334 GagsVV~---------------~dVp~~-s~VvG~PA 354 (388)
|++++|. +|+|++ ++++|+|.
T Consensus 103 g~g~~V~~~~~I~~~~~~~~v~~~~~~~~~~~~g~~~ 139 (139)
T cd03350 103 AAGVVLTQSTPIYDRETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred cCCCEEcCCeEecccCcccEEecccCCCCEEecccCC
Confidence 9999999 888888 78888873
No 36
>PLN02296 carbonate dehydratase
Probab=99.60 E-value=6.7e-15 Score=142.87 Aligned_cols=110 Identities=21% Similarity=0.369 Sum_probs=85.6
Q ss_pred eeeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEc----------CCCEECCCCccCCC---CCCEECCCcEEcc
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSIL----------HNVTLGGTGKMSGD---RHPKIGNGVLVGA 317 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig----------~gvtIgg~~~i~g~---~~~~IGd~V~IGa 317 (388)
...+.||+++.|+.++.|... .+++||+++.|+++|+|. ++++||.+..+... +.++||++|+||.
T Consensus 68 ~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG~ 147 (269)
T PLN02296 68 IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVGM 147 (269)
T ss_pred EcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEECC
Confidence 345677888888777777642 246788888888777653 23444444333321 3579999999999
Q ss_pred CCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCC
Q 047635 318 GTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 318 ga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~ 361 (388)
|++|+++++||++|+||+|++|.++ ||++++++|+||++++...
T Consensus 148 ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~ 193 (269)
T PLN02296 148 GATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLT 193 (269)
T ss_pred CcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCC
Confidence 9999999999999999999999999 8999999999999998654
No 37
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.59 E-value=1.5e-14 Score=128.89 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=85.4
Q ss_pred eeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEE----cCCCEECCCCccCCC---CCCEECCCcEEccCCEECCC
Q 047635 253 FSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSI----LHNVTLGGTGKMSGD---RHPKIGNGVLVGAGTCILGN 324 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~I----g~gvtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg~ 324 (388)
..+.||+++.|++++.|... ..++||+++.||++|+| +++++|+.+..+... .+++||++|+||++++|.++
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g 96 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVVMDG 96 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEEeCC
Confidence 35678888888888777541 24778888888877766 233455544443322 25799999999999999999
Q ss_pred cEECCCCEECCCCEECC--CCCCCcEEEecCcEEeccCC
Q 047635 325 IKIGDGAKIGAGSVVLK--DVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 325 V~IGd~v~IGagsVV~~--dVp~~s~VvG~PArvi~~~~ 361 (388)
++||++++||++++|.+ ++|++++++|+|||+++...
T Consensus 97 ~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~ 135 (155)
T cd04745 97 AVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELS 135 (155)
T ss_pred CEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCC
Confidence 99999999999999998 68999999999999998754
No 38
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.59 E-value=1e-14 Score=140.06 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=87.1
Q ss_pred eeEecCCcEECCceEEcCC-----CCcEECCCcEECCCcEEcCCCEECCCCccCCC----CCCEECCCcEEccCCEECCC
Q 047635 254 SVDIHPGAKIGRGLLFDHA-----TGVVVGETAVIGDNVSILHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCILGN 324 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~g-----tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~Ilg~ 324 (388)
.+.||+++.|++++.|..+ ..++||+++.|+.++.|+++|+||++..+... .+++|||+|+||+++.|.++
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~ 155 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF 155 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence 5778888888888888753 25677777777777777666666665554432 46899999999999999999
Q ss_pred cEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 325 IKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 325 V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
++||++++||++++|.++||+++++.|+|+++.+.
T Consensus 156 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~~~~ 190 (254)
T TIGR01852 156 VRIGRYAMIGGLSAVSKDVPPYGLVEGNRARLRGL 190 (254)
T ss_pred cEECCCCEEeeeeeEeeecCCCcEEecCcCeeccc
Confidence 99999999999999999999999999999998653
No 39
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.59 E-value=9.8e-15 Score=132.56 Aligned_cols=98 Identities=34% Similarity=0.599 Sum_probs=68.2
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEECCCcEECCC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGNIKIGDG 330 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~V~IGd~ 330 (388)
+.||+++.|++++.|++ +++||+++.|+.++.|++++.|+++..+.. ...++||++|+||++++|.++++||++
T Consensus 100 ~~ig~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~ 177 (201)
T TIGR03570 100 ASIGEGTVIMAGAVINP--DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAG 177 (201)
T ss_pred CEECCCCEECCCCEECC--CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCC
Confidence 33444444444444433 444444444444444444444444333321 126799999999999999999999999
Q ss_pred CEECCCCEECCCCCCCcEEEecCc
Q 047635 331 AKIGAGSVVLKDVPPRTTAVGNPA 354 (388)
Q Consensus 331 v~IGagsVV~~dVp~~s~VvG~PA 354 (388)
|+||++++|.+++|+++++.|+||
T Consensus 178 ~~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 178 AIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CEECCCCEECCcCCCCCEEEeccC
Confidence 999999999999999999999997
No 40
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.59 E-value=1e-14 Score=134.73 Aligned_cols=108 Identities=33% Similarity=0.488 Sum_probs=88.9
Q ss_pred eeeEecCCcEECCceEEcCC--CCcEECCCcEECCCcEEcCCCEECCCCccCCC----CCCEECCCcEEccCCEECCCcE
Q 047635 253 FSVDIHPGAKIGRGLLFDHA--TGVVVGETAVIGDNVSILHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~g--tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
..+.|++++.||.++.+..+ .+++||+++.|++++.|++++.|++...+... .+++||++|+||++++|.++++
T Consensus 91 ~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ 170 (205)
T cd03352 91 GGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLT 170 (205)
T ss_pred ceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcE
Confidence 35677888888888877652 25677777777777777777777766555432 3689999999999999999999
Q ss_pred ECCCCEECCCCEECCCCCCCcEEEecCcEEeccC
Q 047635 327 IGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 360 (388)
Q Consensus 327 IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~ 360 (388)
||++++|+++++|.+|+|++.++.|+||++++++
T Consensus 171 ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~~ 204 (205)
T cd03352 171 IGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREW 204 (205)
T ss_pred ECCCCEEcCCCEEeeECCCCCEEEeecCchhhhc
Confidence 9999999999999999999999999999998754
No 41
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.58 E-value=2.1e-14 Score=137.82 Aligned_cols=106 Identities=26% Similarity=0.425 Sum_probs=85.9
Q ss_pred eeEecCCcEECCceEEcCC-----CCcEECCCcEECCCcEEcCCCEECCCCccCCC----CCCEECCCcEEccCCEECCC
Q 047635 254 SVDIHPGAKIGRGLLFDHA-----TGVVVGETAVIGDNVSILHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCILGN 324 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~g-----tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~Ilg~ 324 (388)
.+.||+++.|++++.|..+ ..++||+++.|+.+++|++++.||++..+... .+++|||+|+||+++.|.++
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 5677888888888877653 24777777777777777666666665554332 46899999999999999999
Q ss_pred cEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 325 IKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 325 V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
++||++++||++++|.++||+++++.|+|+++.+.
T Consensus 157 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~~~~ 191 (254)
T cd03351 157 CRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGL 191 (254)
T ss_pred cEECCCCEECcCCEEeeecCCCeEEEccCCeEecc
Confidence 99999999999999999999999999999987653
No 42
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.57 E-value=9.3e-15 Score=146.20 Aligned_cols=113 Identities=30% Similarity=0.380 Sum_probs=94.7
Q ss_pred eeeEecCCcEECCceEEcCC--CCcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEECCCcE
Q 047635 253 FSVDIHPGAKIGRGLLFDHA--TGVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~g--tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
.++.||+++.||.++.|+.+ .+++||+++.|+++|+|+++|+||.+..+.. ..+++||++|+||.++.|.++++
T Consensus 202 g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ 281 (343)
T PRK00892 202 GRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLE 281 (343)
T ss_pred ccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCE
Confidence 35778888888888888764 2578888888888888888888887665543 24689999999999999999999
Q ss_pred ECCCCEECCCCEECCCCCC-CcEEEecCcEEeccCCCCcc
Q 047635 327 IGDGAKIGAGSVVLKDVPP-RTTAVGNPARLIGGKENPFM 365 (388)
Q Consensus 327 IGd~v~IGagsVV~~dVp~-~s~VvG~PArvi~~~~~~~~ 365 (388)
||++++||++++|.+|+|+ +.++.|+||+.++++.+...
T Consensus 282 ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~~~~~~ 321 (343)
T PRK00892 282 IGDGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAA 321 (343)
T ss_pred ECCCCEEecCCeeCCccCCCCeEEEeecCchHHHHHHHHH
Confidence 9999999999999999999 89999999999987765443
No 43
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.57 E-value=2.6e-14 Score=118.32 Aligned_cols=103 Identities=38% Similarity=0.622 Sum_probs=82.6
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCC--EECCCCc---cCCCCCCEECCCcEEccCCEECCCcEECC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNV--TLGGTGK---MSGDRHPKIGNGVLVGAGTCILGNIKIGD 329 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gv--tIgg~~~---i~g~~~~~IGd~V~IGaga~Ilg~V~IGd 329 (388)
+.||+++.|++++.|....+++||+++.||++|.|..+. .+..... .....+++||++|+||.++.|..++.||+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 578899999999988765577888888888888776541 1111110 01124689999999999999999999999
Q ss_pred CCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 330 GAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 330 ~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
+|+|++++.|.+++|+++++.|.|||++
T Consensus 82 ~~~i~~~~~v~~~i~~~~i~~g~pa~~~ 109 (109)
T cd04647 82 GAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 (109)
T ss_pred CCEECCCCEEeeECCCCCEEEccccEeC
Confidence 9999999999999999999999999975
No 44
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.56 E-value=2.7e-14 Score=137.89 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=67.0
Q ss_pred eeeeEecCCcEECCceEEcCC---CCcEECCCcEECCC------cEEcCCCEECCCCccCC------CCCCEECCCcEEc
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA---TGVVVGETAVIGDN------VSILHNVTLGGTGKMSG------DRHPKIGNGVLVG 316 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g---tgVvIG~~~~IGdn------V~Ig~gvtIgg~~~i~g------~~~~~IGd~V~IG 316 (388)
..+..|.+++.||+|+.|.++ .++.||++++|+.+ |.||++|+|+.+..+.+ ..+++|||+|+||
T Consensus 104 ~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IG 183 (269)
T TIGR00965 104 VPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIG 183 (269)
T ss_pred CCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEEC
Confidence 344455555555555555432 13344444433333 33333333333332222 2458999999999
Q ss_pred cCCEECCCcEECCCCEECCCCEECC---------------CCCCCcEEE-e-cCc
Q 047635 317 AGTCILGNIKIGDGAKIGAGSVVLK---------------DVPPRTTAV-G-NPA 354 (388)
Q Consensus 317 aga~Ilg~V~IGd~v~IGagsVV~~---------------dVp~~s~Vv-G-~PA 354 (388)
++|+|.++++||++|+||+|++|.+ +||++++|+ | .|.
T Consensus 184 a~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~~g~~p~ 238 (269)
T TIGR00965 184 ARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVVSGNLPS 238 (269)
T ss_pred CCCEEcCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEecCCeec
Confidence 9999999999999999999999954 789999998 4 663
No 45
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.54 E-value=5.2e-14 Score=130.40 Aligned_cols=110 Identities=21% Similarity=0.330 Sum_probs=84.7
Q ss_pred eeeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEc----CCCEECCCCccCCC---CCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSIL----HNVTLGGTGKMSGD---RHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig----~gvtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg 323 (388)
...+.||+++.|+.++.|... ..++||+++.||++|+|. .++.|+.++.+... .+++||++|+||.+++|..
T Consensus 24 ~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~ 103 (192)
T TIGR02287 24 IGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMD 103 (192)
T ss_pred EeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCC
Confidence 445778888888888877532 246777777777777662 34455544443321 2579999999999999999
Q ss_pred CcEECCCCEECCCCEECC--CCCCCcEEEecCcEEeccCC
Q 047635 324 NIKIGDGAKIGAGSVVLK--DVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~--dVp~~s~VvG~PArvi~~~~ 361 (388)
+++||++++||+|++|.+ ++|++++++|+|||+++...
T Consensus 104 g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~ 143 (192)
T TIGR02287 104 GAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELS 143 (192)
T ss_pred CeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCC
Confidence 999999999999999998 47999999999999997643
No 46
>PLN02472 uncharacterized protein
Probab=99.54 E-value=6e-14 Score=134.62 Aligned_cols=111 Identities=18% Similarity=0.277 Sum_probs=83.2
Q ss_pred eeeeEecCCcEECCceEEcC-CCCcEECCCcEECCCcEEc----------CCCEECCCCccCCC---CCCEECCCcEEcc
Q 047635 252 VFSVDIHPGAKIGRGLLFDH-ATGVVVGETAVIGDNVSIL----------HNVTLGGTGKMSGD---RHPKIGNGVLVGA 317 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~-gtgVvIG~~~~IGdnV~Ig----------~gvtIgg~~~i~g~---~~~~IGd~V~IGa 317 (388)
...+.||+++.|+.++.|.. ...++||+++.||++|+|. ++++||.+..+... ..++||++|+||.
T Consensus 75 ~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~ 154 (246)
T PLN02472 75 AGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQ 154 (246)
T ss_pred ecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECC
Confidence 34566777777777766643 2357777777777766663 23444443333221 2579999999999
Q ss_pred CCEECCCcEECCCCEECCCCEEC--CCCCCCcEEEecCcEEeccCCC
Q 047635 318 GTCILGNIKIGDGAKIGAGSVVL--KDVPPRTTAVGNPARLIGGKEN 362 (388)
Q Consensus 318 ga~Ilg~V~IGd~v~IGagsVV~--~dVp~~s~VvG~PArvi~~~~~ 362 (388)
+++|+.+++||++|+||+|++|. .++|+++++.|+||++++.+.+
T Consensus 155 ~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 155 HSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 99999999999999999999999 5689999999999999987654
No 47
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.51 E-value=1.4e-13 Score=133.67 Aligned_cols=110 Identities=23% Similarity=0.362 Sum_probs=71.0
Q ss_pred eeeeEecCCcEECCceEEcC---CCCcEECCCc------EECCCcEEcCCCEECCCCccCC------CCCCEECCCcEEc
Q 047635 252 VFSVDIHPGAKIGRGLLFDH---ATGVVVGETA------VIGDNVSILHNVTLGGTGKMSG------DRHPKIGNGVLVG 316 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~---gtgVvIG~~~------~IGdnV~Ig~gvtIgg~~~i~g------~~~~~IGd~V~IG 316 (388)
..++.|++++.||+|+.|.+ +.|..||+++ .||++|.||.+|+|+.+..+.+ ..+++|||+|+||
T Consensus 107 ~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IG 186 (272)
T PRK11830 107 VPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIG 186 (272)
T ss_pred cCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEEC
Confidence 34455555555555555442 1123333333 3333333444444444333322 2358999999999
Q ss_pred cCCEECCCcEECCCCEECCCCEECC---------------CCCCCcEEE-e-----------cCcEEeccCC
Q 047635 317 AGTCILGNIKIGDGAKIGAGSVVLK---------------DVPPRTTAV-G-----------NPARLIGGKE 361 (388)
Q Consensus 317 aga~Ilg~V~IGd~v~IGagsVV~~---------------dVp~~s~Vv-G-----------~PArvi~~~~ 361 (388)
++++|..+++||++|+||+|++|.+ +||++++|+ | .||+++++..
T Consensus 187 a~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~ 258 (272)
T PRK11830 187 ARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVD 258 (272)
T ss_pred CCCEEcCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEecCcccccCCCcCCcCcEEEEEcc
Confidence 9999999999999999999988875 589999987 7 3777777654
No 48
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.48 E-value=3.2e-13 Score=120.54 Aligned_cols=110 Identities=27% Similarity=0.429 Sum_probs=86.4
Q ss_pred eeeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEcCC----CEECCCCccCCC---CCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSILHN----VTLGGTGKMSGD---RHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig~g----vtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg 323 (388)
...+.||+++.|++++.|... .+++||+++.||++|.|... +.|++...+... .+++||++|+||.++.|.+
T Consensus 16 ~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~ 95 (154)
T cd04650 16 IGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILLN 95 (154)
T ss_pred EeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEeC
Confidence 355778888888888887753 24788888888888876432 444443333221 2469999999999999999
Q ss_pred CcEECCCCEECCCCEECC--CCCCCcEEEecCcEEeccCC
Q 047635 324 NIKIGDGAKIGAGSVVLK--DVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~--dVp~~s~VvG~PArvi~~~~ 361 (388)
+++||++++|++++.|.+ ++|++++++|+||++++...
T Consensus 96 ~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~ 135 (154)
T cd04650 96 GAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLT 135 (154)
T ss_pred CCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCC
Confidence 999999999999999996 68999999999999997543
No 49
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=3.2e-13 Score=139.32 Aligned_cols=60 Identities=35% Similarity=0.624 Sum_probs=55.1
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEE-ecCcEEeccCCCCcc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAV-GNPARLIGGKENPFM 365 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~Vv-G~PArvi~~~~~~~~ 365 (388)
.++|||+|+||.+++|.++++||++++||+|++|.+|||++++++ |.|++.+.++.+|.+
T Consensus 394 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 454 (456)
T PRK09451 394 KTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHIQGWQRPVK 454 (456)
T ss_pred CCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceeccccccccc
Confidence 478999999999999999999999999999999999999999996 589999998887653
No 50
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.46 E-value=3.9e-13 Score=137.62 Aligned_cols=54 Identities=39% Similarity=0.620 Sum_probs=50.2
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
.++|||+|+||.+++|.++++||++|+||+|++|.+|||++++++|.|++...+
T Consensus 390 ~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~ 443 (451)
T TIGR01173 390 KTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIE 443 (451)
T ss_pred CCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeecc
Confidence 479999999999999999999999999999999999999999999988877643
No 51
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.46 E-value=3.8e-13 Score=138.07 Aligned_cols=54 Identities=28% Similarity=0.532 Sum_probs=50.9
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
.++||++|+||++++|.++++||++++||+|++|.+|||++++++|+|++.+.+
T Consensus 390 ~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~ 443 (450)
T PRK14360 390 RTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKE 443 (450)
T ss_pred CcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeecc
Confidence 479999999999999999999999999999999999999999999999988753
No 52
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=8.3e-13 Score=118.49 Aligned_cols=108 Identities=24% Similarity=0.375 Sum_probs=83.3
Q ss_pred eeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEcCC------------CEECCCCccCCC---CCCEECCCcEEcc
Q 047635 254 SVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSILHN------------VTLGGTGKMSGD---RHPKIGNGVLVGA 317 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig~g------------vtIgg~~~i~g~---~~~~IGd~V~IGa 317 (388)
++.||+++.|++++.|... .+++||++|.||++|.|... ++|+++..+... .+.+||+++.||.
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5778888888888887742 24678888888877777542 344444333322 1357888889999
Q ss_pred CCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCC
Q 047635 318 GTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 318 ga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~ 361 (388)
+++|..++.||++++|++|++|.++ +|+++++.|+||+++++..
T Consensus 101 ~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~ 146 (161)
T cd03359 101 NCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELP 146 (161)
T ss_pred CCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecc
Confidence 9999999999999999999999988 7999999999999998754
No 53
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.43 E-value=8.9e-13 Score=135.33 Aligned_cols=54 Identities=33% Similarity=0.647 Sum_probs=50.5
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
.++||++|+||+|++|.++++||++++||+|++|.+|+|+++++.|.|......
T Consensus 380 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~~~ 433 (446)
T PRK14353 380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQETKP 433 (446)
T ss_pred CcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceEecc
Confidence 478999999999999999999999999999999999999999999999987653
No 54
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.42 E-value=1.2e-12 Score=142.23 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=71.2
Q ss_pred CcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCC---CCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 260 GAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSG---DRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g---~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
+++||+|+.|.+ ..+...+..+||+||+|+++|+|.+.....+ .+.++||+||+||++|+|.+|++|||+++||++
T Consensus 112 Ga~IG~~v~I~~-~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgag 190 (695)
T TIGR02353 112 GAKIGKGVDIGS-LPPVCTDLLTIGAGTIVRKEVMLLGYRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHG 190 (695)
T ss_pred CCEECCCCEEEe-eecccCCceEECCCCEECCCCEEEcccCCCCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 344444444433 1122233445555555555555543221111 135899999999999999999999999999999
Q ss_pred CEECC--CCCCCcEEEecCcEEeccCC
Q 047635 337 SVVLK--DVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 337 sVV~~--dVp~~s~VvG~PArvi~~~~ 361 (388)
|+|.+ +||+++++.|+|||++++..
T Consensus 191 S~V~~g~~v~~~~~~~G~PA~~~~~~~ 217 (695)
T TIGR02353 191 SALQGGQSIPDGERWHGSPAQKTGADY 217 (695)
T ss_pred CEecCCcccCCCCEEEeeCCEEecccc
Confidence 99998 89999999999999998744
No 55
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=133.00 Aligned_cols=54 Identities=35% Similarity=0.721 Sum_probs=51.5
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
+++|||+|+||++++|.++++||++++||+|++|.+|||++++++|+|.++++.
T Consensus 383 ~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~ 436 (448)
T PRK14357 383 PTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKE 436 (448)
T ss_pred CcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEecc
Confidence 489999999999999999999999999999999999999999999999999753
No 56
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.40 E-value=1.8e-12 Score=134.98 Aligned_cols=58 Identities=40% Similarity=0.637 Sum_probs=53.1
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEE-ecCcEEeccCCCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAV-GNPARLIGGKENP 363 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~Vv-G~PArvi~~~~~~ 363 (388)
+++|||+|+||.+++|.++++||++++||+|++|.+|||++++++ |.|++.++.|.+.
T Consensus 399 ~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~~~~ 457 (482)
T PRK14352 399 RTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGWVQR 457 (482)
T ss_pred CCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEeccccccccccccc
Confidence 489999999999999999999999999999999999999999865 8999999987643
No 57
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.40 E-value=2.6e-12 Score=115.72 Aligned_cols=146 Identities=21% Similarity=0.279 Sum_probs=97.4
Q ss_pred HHHHHHHhhhcCCcccchhhhhccCCCCHHHHHHHHHHhhhcCcccchHHHHHHHHHHhhhcHHHHHHHHHHHHH--Hhh
Q 047635 126 MQDEARSDVEEEPVLSSYYFASILSHKSLESALAKHLSIKLSSLSLQSGTLFELFMGVIVEDQEIIKAVKADLIA--IKE 203 (388)
Q Consensus 126 i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la~~la~~L~~~~~~~~~l~~~~~~~l~~~p~i~~~i~~Dl~a--~~~ 203 (388)
|+.|.++...+||+..+++. .++.+|+|++...||+++++..... ..+..+ +...... -.+
T Consensus 1 ~~~d~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~yR~~~~~~~~~~--~~l~~~--------------~~~~~~~~~~~~ 63 (162)
T TIGR01172 1 IREDIRAVRERDPAARSYLE-VLLYYPGFHALWAYRFAHYLWKRGF--KFLARL--------------LSNFIRVLTGVD 63 (162)
T ss_pred CHHHHHHHHhCCcccCCeEE-EEEECchHHHHHHHHHHHHHHHccH--HHHHHH--------------HHHHHheeeCeE
Confidence 47899999999999999887 6778999999999999999874211 011000 0000000 011
Q ss_pred cCccccccceeeeccchhHHHHHHHHHHHHHHhcchHHHHHHHhccceeeeeEecCCcEECCceEEcCCCCcEECCC---
Q 047635 204 RDPACISYAHCLLNFKGFLACQAHRIAHRLWLQGRKVLALLIQNRVSEVFSVDIHPGAKIGRGLLFDHATGVVVGET--- 280 (388)
Q Consensus 204 rDPa~~~~~~~ll~~~gf~al~~~Ria~~l~~~g~~~la~~i~~~~~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~--- 280 (388)
.+|.+...... .+.+..++.|+++++||++|.|++ +++||..
T Consensus 64 I~~~~~Ig~~~---------------------------------~i~~~~g~~Ig~~~~IG~~~~I~~--~v~ig~~~~~ 108 (162)
T TIGR01172 64 IHPGARIGRGV---------------------------------FIDHGTGVVIGETAVIGDDVTIYH--GVTLGGTGKE 108 (162)
T ss_pred eCCCCEECCCe---------------------------------EECCCCeEEECCCCEECCCCEEcC--CCEECCCccc
Confidence 12222111110 011224577888888888888887 7777753
Q ss_pred -----cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 281 -----AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 281 -----~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
++||++|.|+.+++|.+ .++||++|+||++++|.++ |.+++++
T Consensus 109 ~~~~~~~Ig~~v~Ig~~a~I~~--------~v~IG~~~~Iga~s~V~~d--vp~~~~~ 156 (162)
T TIGR01172 109 KGKRHPTVGEGVMIGAGAKVLG--------NIEVGENAKIGANSVVLKD--VPPGATV 156 (162)
T ss_pred cCCcCCEECCCcEEcCCCEEEC--------CcEECCCCEECCCCEECCC--CCCCCEE
Confidence 57888888888888875 6899999999999999886 5666654
No 58
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.39 E-value=3.2e-12 Score=113.42 Aligned_cols=110 Identities=25% Similarity=0.445 Sum_probs=85.2
Q ss_pred eeeeEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEcCC----CEECCCCccCCC---CCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSILHN----VTLGGTGKMSGD---RHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig~g----vtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg 323 (388)
...+.||+++.|++++.|... ..++||+++.|+++++|... +.|+.+..+... .+++||++++||+++.|.+
T Consensus 15 ~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~ 94 (153)
T cd04645 15 IGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIILD 94 (153)
T ss_pred EEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEcC
Confidence 345778888888888877642 35688888888887755332 344443333221 2479999999999999999
Q ss_pred CcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCC
Q 047635 324 NIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~ 361 (388)
+++||++|+|+++++|.++ +|+++++.|.|++++++..
T Consensus 95 ~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~ 134 (153)
T cd04645 95 GAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELT 134 (153)
T ss_pred CCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCC
Confidence 9999999999999999985 7999999999999988765
No 59
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.39 E-value=3.3e-12 Score=117.22 Aligned_cols=49 Identities=39% Similarity=0.735 Sum_probs=46.8
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPA 354 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PA 354 (388)
.++|||+|+||.+++|.++++||++++|++|++|.+|||++++++|.|-
T Consensus 144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~~ 192 (193)
T cd03353 144 RTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARAR 192 (193)
T ss_pred CCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEeccC
Confidence 5789999999999999999999999999999999999999999999873
No 60
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.38 E-value=8.9e-13 Score=130.03 Aligned_cols=117 Identities=31% Similarity=0.420 Sum_probs=99.1
Q ss_pred cceeeeeEecCCcEECCceEEcCCC--CcEECCCcEECCCcEEcCCCEECCCCccCC----CCCCEECCCcEEccCCEEC
Q 047635 249 VSEVFSVDIHPGAKIGRGLLFDHAT--GVVVGETAVIGDNVSILHNVTLGGTGKMSG----DRHPKIGNGVLVGAGTCIL 322 (388)
Q Consensus 249 ~~~~~gV~Ig~~a~IG~gv~I~~gt--gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Il 322 (388)
+.....|.|+++++||.|+.|+++. .++||+++.|.+-|.|+|+|+||.++.+.+ ...++||++|.||..+.|.
T Consensus 197 i~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~ 276 (338)
T COG1044 197 IPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIA 276 (338)
T ss_pred cceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeec
Confidence 3445678999999999999999931 388888888888888888888887766544 2358999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCCCCcc
Q 047635 323 GNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPFM 365 (388)
Q Consensus 323 g~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~~~~ 365 (388)
+...|||++.|++.+.|.++||++..+.|.|++..++|.+...
T Consensus 277 gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~w~k~~a 319 (338)
T COG1044 277 GHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPIKEWLKTAA 319 (338)
T ss_pred CceEEcCCCEEecccccccccCCCceeccCCCchHHHHHHHHH
Confidence 9999999999999999999999888888899999998875443
No 61
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=2.4e-12 Score=131.27 Aligned_cols=56 Identities=34% Similarity=0.516 Sum_probs=51.3
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEe-cCcEEeccCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVG-NPARLIGGKE 361 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG-~PArvi~~~~ 361 (388)
.++|||+|+||+|++|.++++||++++||+|++|.+|||++++++| .|++..+++.
T Consensus 367 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~~~ 423 (430)
T PRK14359 367 KTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIKNFY 423 (430)
T ss_pred CCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehhhHH
Confidence 4799999999999999999999999999999999999999999987 7777777664
No 62
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.38 E-value=6.6e-13 Score=125.12 Aligned_cols=112 Identities=29% Similarity=0.360 Sum_probs=88.7
Q ss_pred eeeeEecCCcEECCceEEcCCC-----------------CcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcE
Q 047635 252 VFSVDIHPGAKIGRGLLFDHAT-----------------GVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVL 314 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gt-----------------gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~ 314 (388)
...+.||++++|.+.++|..+| .+.|.++|+||++|++.+|++|++ |+.|||++.
T Consensus 79 ~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAG--------HV~igD~ai 150 (260)
T COG1043 79 PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAG--------HVEVGDYAI 150 (260)
T ss_pred ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEec--------cEEECCEEE
Confidence 4557777777777777776654 344445567777777777777766 999999999
Q ss_pred EccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCCCCccccCCCC
Q 047635 315 VGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKENPFMLDKIPS 371 (388)
Q Consensus 315 IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~~~~~~~~~p~ 371 (388)
||..+-|-+-|+||++|+||..|-|.+||||++++.|+||++-+-...+-++.+.+.
T Consensus 151 iGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~ 207 (260)
T COG1043 151 IGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSR 207 (260)
T ss_pred EcCcceEEEEEEEcchheeccccccccCCCCeEEecCCcccccccceeeeeccCCCH
Confidence 999999999999999999999999999999999999999999765544443344444
No 63
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.36 E-value=1.2e-11 Score=110.69 Aligned_cols=105 Identities=30% Similarity=0.475 Sum_probs=79.9
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
..+++++.||.++.|.+ +++|+.+++||++|.|+.++.|+. +++||++|+|++++.|.++++||++|+||
T Consensus 91 ~~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 91 AVVSPSAVIGEGCVIMA--GAVINPDARIGDNVIINTGAVIGH--------DCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred eEECCCCEECCCCEEcC--CCEECCCCEECCCeEECCCCEECC--------CCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 34566666777777665 667777777777777777777764 68999999999999999999999999999
Q ss_pred CCCEECCC--CCCCcEEEecCcEEeccCCCCccccCCC
Q 047635 335 AGSVVLKD--VPPRTTAVGNPARLIGGKENPFMLDKIP 370 (388)
Q Consensus 335 agsVV~~d--Vp~~s~VvG~PArvi~~~~~~~~~~~~p 370 (388)
++++|.++ +.+++ ++|..+.+.+.........+.|
T Consensus 161 ~~~~v~~~~~ig~~~-~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 161 AGATIIQGVTIGAGA-IIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CCCEEcCCCEECCCC-EECCCCEEcCCCCCCCEEEecC
Confidence 99999987 46665 4588888877655444333433
No 64
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.33 E-value=1.6e-11 Score=111.37 Aligned_cols=107 Identities=29% Similarity=0.447 Sum_probs=83.7
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
...|++++.||+++.|++ +++|+++++||++|.|+.+++|+. +++||++++||++++|.++++||++|+|
T Consensus 93 ~a~i~~~~~ig~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~--------~~~ig~~~~i~~~~~i~~~~~ig~~~~i 162 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMA--GAVINPDVRIGDNVIINTGAIVEH--------DCVIGDYVHIAPGVTLSGGVVIGEGVFI 162 (201)
T ss_pred CeEECCCCEECCCCEECC--CCEECCCCEECCCcEECCCCEEcC--------CCEECCCCEECCCCEEeCCcEECCCCEE
Confidence 345667777777777766 677777777777777777777764 6899999999999999999999999999
Q ss_pred CCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCC
Q 047635 334 GAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPS 371 (388)
Q Consensus 334 GagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~ 371 (388)
|++++|.+++ .++++ +|.++.+.+....+....+.|+
T Consensus 163 g~~~~v~~~~~i~~~~~-i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 163 GAGATIIQGVTIGAGAI-VGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CCCCEEeCCCEECCCCE-ECCCCEECCcCCCCCEEEeccC
Confidence 9999999874 66654 5778888776665555556664
No 65
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.33 E-value=7.6e-12 Score=119.09 Aligned_cols=113 Identities=28% Similarity=0.455 Sum_probs=78.3
Q ss_pred eEecCCcEECCceEEcCC----CCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC-------
Q 047635 255 VDIHPGAKIGRGLLFDHA----TGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG------- 323 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~g----tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg------- 323 (388)
..|++++.|+.++.|+.+ .+++|+.+++||++|+|+++++|++ +++||++|+||++++|.+
T Consensus 87 ~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~--------~s~Ig~~~~Ig~~~~I~~~~~~~~~ 158 (231)
T TIGR03532 87 ARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGG--------RATVGKNVHIGAGAVLAGVIEPPSA 158 (231)
T ss_pred cEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCC--------CcEECCCcEEcCCcEEccccccccC
Confidence 344444444444444430 0444444555555555555555543 689999999999999985
Q ss_pred -CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccccc
Q 047635 324 -NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 324 -~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~ 376 (388)
+++||++|+||++++|.+++ .++ .++|..+.+.+.........++|++.++.
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~-~~IgagsvV~~di~~~~vv~G~PA~~i~~ 213 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKG-AVVAAGAIVTEDVPPNTVVAGVPAKVIKQ 213 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCC-CEECCCCEEccccCCCcEEEecCCEEecc
Confidence 69999999999999998875 444 56677788888877777778999876654
No 66
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.1e-11 Score=125.30 Aligned_cols=52 Identities=35% Similarity=0.610 Sum_probs=49.1
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEec
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIG 358 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~ 358 (388)
++|||+++||+|+.+..+|+||+++.||+||+|++|||++++.++.+-+..+
T Consensus 398 T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~ 449 (460)
T COG1207 398 TIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNK 449 (460)
T ss_pred eeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeec
Confidence 8999999999999999999999999999999999999999999998777654
No 67
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.3e-11 Score=127.54 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=48.3
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
.+.|||+|+||.+++|.++++||++++|++|++|.+|||++++++|.+..+.
T Consensus 397 ~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~~~~~~~~~~~ 448 (459)
T PRK14355 397 RTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDSLAIARSPQVN 448 (459)
T ss_pred CcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCcEEEeccceec
Confidence 4789999999999999999999999999999999999999999999776664
No 68
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.29 E-value=3.7e-12 Score=121.96 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=67.6
Q ss_pred CcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEe
Q 047635 274 GVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVG 351 (388)
Q Consensus 274 gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG 351 (388)
.+++|..++||+||.|+.|+.|++.-...+...+.|||||+||+++.+..+|.+|+||+|++|++|++|+|.+..+.|
T Consensus 150 ~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g 227 (271)
T COG2171 150 RASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG 227 (271)
T ss_pred eeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEEeecc
Confidence 667777788888888888888887433344557899999999999999999999999999999999999999988887
No 69
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2e-11 Score=125.58 Aligned_cols=51 Identities=29% Similarity=0.595 Sum_probs=49.2
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEE
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARL 356 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArv 356 (388)
+++|||+++||.+++|.++++||++++||+|++|.+|||++++++|.|+.+
T Consensus 393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~ 443 (458)
T PRK14354 393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQV 443 (458)
T ss_pred CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEecccee
Confidence 578999999999999999999999999999999999999999999999887
No 70
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.27 E-value=3.4e-11 Score=93.03 Aligned_cols=77 Identities=39% Similarity=0.575 Sum_probs=55.8
Q ss_pred EECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEEC
Q 047635 262 KIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVL 340 (388)
Q Consensus 262 ~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~ 340 (388)
+||+++.|++ +++|+..+.||++|.|+++++|++.........++||++++|+.+++|.++++||++++|+++++|.
T Consensus 2 ~ig~~~~i~~--~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 2 FIGEGVKIHP--KAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred EECCCeEECC--CCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence 4555555554 4555556666666777666666653222122458999999999999999999999999999999874
No 71
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.27 E-value=3.2e-11 Score=124.21 Aligned_cols=56 Identities=36% Similarity=0.626 Sum_probs=51.4
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~~ 361 (388)
.++|||+++||.+++|.++++||++++||+|++|.+|+|++++++|...+....++
T Consensus 398 ~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 453 (456)
T PRK14356 398 RTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKNLPRK 453 (456)
T ss_pred CCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecceeehhhh
Confidence 47999999999999999999999999999999999999999999999888765543
No 72
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.26 E-value=1.6e-11 Score=108.80 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV 343 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV 343 (388)
.+.||++|+||+||+| ++.||++|+||+|++|.++.
T Consensus 73 pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 73 VISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred CEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCe
Confidence 4899999999999999 69999999999999999874
No 73
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.26 E-value=6.1e-11 Score=109.56 Aligned_cols=69 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCCCCccccCCCCcccc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKENPFMLDKIPSFTMD 375 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~ 375 (388)
+++||++++|++++.|.++++||++|+||++++|..+ |++++++.+ .+.+.+.........+.|++.++
T Consensus 132 ~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~-~s~v~~~~~~~~~~~G~pa~~~~ 202 (205)
T cd03352 132 NVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGA-GSGVTSIVPPGEYVSGTPAQPHR 202 (205)
T ss_pred CCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcC-CCEEeeECCCCCEEEeecCchhh
Confidence 4566666666666777788999999999999999988 588777555 47777777777777899987654
No 74
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.22 E-value=6.5e-11 Score=114.28 Aligned_cols=119 Identities=21% Similarity=0.343 Sum_probs=80.8
Q ss_pred eeEecCCcEECCceEEcC----------CCCcEECCCcEECCCcEEcCC------CEECCCCccCC----CCCCEECCCc
Q 047635 254 SVDIHPGAKIGRGLLFDH----------ATGVVVGETAVIGDNVSILHN------VTLGGTGKMSG----DRHPKIGNGV 313 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~----------gtgVvIG~~~~IGdnV~Ig~g------vtIgg~~~i~g----~~~~~IGd~V 313 (388)
.+.||+++.|++++.|+. .+.++||+++.|+++|+|..+ ++||.++.+.. .++++||++|
T Consensus 47 ~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v 126 (255)
T PRK12461 47 PTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNV 126 (255)
T ss_pred CCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCc
Confidence 444555555555555542 124566666666666665433 33333333221 1468999999
Q ss_pred EEccCCEECCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcc
Q 047635 314 LVGAGTCILGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFT 373 (388)
Q Consensus 314 ~IGaga~Ilg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~ 373 (388)
+|+.++.+.++++||++|+||++++|.+.+ .+++++.| -+.+.++........+.|++.
T Consensus 127 ~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~-gs~V~~dVpp~~i~~G~pa~~ 187 (255)
T PRK12461 127 ILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAG-GSRISKDVPPYCMMAGHPTNV 187 (255)
T ss_pred EECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECC-CceEeccCCCCeEEecCcceE
Confidence 999999999999999999999999999885 77766655 477777776666667888863
No 75
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.22 E-value=4.5e-11 Score=130.00 Aligned_cols=99 Identities=28% Similarity=0.485 Sum_probs=69.3
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGA 331 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v 331 (388)
..|+.||+++.|+.....++ ..++||+++.|+++|.|..+. ..++... .++++||++|+||++|+|+++++|||+|
T Consensus 595 ~lGa~IG~~v~i~~~~~~~~-dlv~IGd~~~I~~~~~i~~h~--~~~~~~~-~~~v~IG~~~~IG~~a~V~~g~~IGd~a 670 (695)
T TIGR02353 595 LLGVKIGRGVYIDGTDLTER-DLVTIGDDSTLNEGSVIQTHL--FEDRVMK-SDTVTIGDGATLGPGAIVLYGVVMGEGS 670 (695)
T ss_pred HCCCEECCCeEECCeeccCC-CCeEECCCCEECCCCEEEecc--ccccccc-cCCeEECCCCEECCCCEECCCCEECCCC
Confidence 44555555555554444433 134555555555555553321 1111111 2369999999999999999999999999
Q ss_pred EECCCCEECC--CCCCCcEEEecCc
Q 047635 332 KIGAGSVVLK--DVPPRTTAVGNPA 354 (388)
Q Consensus 332 ~IGagsVV~~--dVp~~s~VvG~PA 354 (388)
.||++|+|.+ ++|+++++.|+||
T Consensus 671 ~Ig~~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 671 VLGPDSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred EECCCCEEcCCcccCCCCEEEeccC
Confidence 9999999998 7999999999997
No 76
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.22 E-value=5.8e-11 Score=118.33 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=47.1
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCCCCccccCCCCccccc
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~ 376 (388)
++||++|.|++++.|.++++||++|+||+++.|... |++++++.+. +.+.+..+.+..+.+.|+..+++
T Consensus 236 v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~-s~V~~~v~~~~~~~G~pa~~~~~ 306 (324)
T TIGR01853 236 CRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK-SGVTKSIPPPGVYGGIPARPNKE 306 (324)
T ss_pred CEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccC-CEeCCcCCCCcEEEccCccHHHH
Confidence 344444444444455556777777777777888766 4777766655 88888888777778899877653
No 77
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.22 E-value=1.1e-10 Score=98.35 Aligned_cols=90 Identities=24% Similarity=0.339 Sum_probs=58.0
Q ss_pred EECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEE---------------CCCcEECCCCEECCCCEEC
Q 047635 276 VVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCI---------------LGNIKIGDGAKIGAGSVVL 340 (388)
Q Consensus 276 vIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~I---------------lg~V~IGd~v~IGagsVV~ 340 (388)
+|+.+++||++|.|++++.|+. +++||++|+|++++.+ .++++||++|+||++++|.
T Consensus 12 ~i~~~~~Ig~~~~I~~~~~i~~--------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~ 83 (119)
T cd03358 12 FIENDVKIGDNVKIQSNVSIYE--------GVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATIL 83 (119)
T ss_pred EECCCcEECCCcEECCCcEEeC--------CeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEEe
Confidence 3444444444444444444432 3455555555555554 5678999999999999997
Q ss_pred CC--CCCCcEEEecCcEEeccCCCCccccCCCCccc
Q 047635 341 KD--VPPRTTAVGNPARLIGGKENPFMLDKIPSFTM 374 (388)
Q Consensus 341 ~d--Vp~~s~VvG~PArvi~~~~~~~~~~~~p~~~~ 374 (388)
.+ +++++ .+|..+.+.+..+.+....+.|++.+
T Consensus 84 ~~~~ig~~~-~i~~~~~v~~~i~~~~~~~G~pa~~~ 118 (119)
T cd03358 84 PGVTIGEYA-LVGAGAVVTKDVPPYALVVGNPARII 118 (119)
T ss_pred CCcEECCCC-EEccCCEEeCcCCCCeEEecCcceec
Confidence 75 35654 55666777777666666678888654
No 78
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.20 E-value=8.7e-11 Score=117.65 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=50.7
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCCC-CccccCCCCcccc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKEN-PFMLDKIPSFTMD 375 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~~-~~~~~~~p~~~~~ 375 (388)
+++||+++.|++++.|.++++||++|+||.++.|..+ |.+++++.+. +.+.+.... +....++|+...+
T Consensus 243 ~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~-s~v~~~i~~~~~~~~G~pa~~~~ 314 (343)
T PRK00892 243 NVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAM-SGVTKSIPEPGEYSSGIPAQPNK 314 (343)
T ss_pred CCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecC-CeeCCccCCCCeEEEeecCchHH
Confidence 4566666666666667778888899999999999888 5888888777 666666665 4444688887653
No 79
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.19 E-value=2e-10 Score=110.43 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=65.7
Q ss_pred CcEECCCcEECCCcEEcC-------CCEECCCCccCCC----CCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC
Q 047635 274 GVVVGETAVIGDNVSILH-------NVTLGGTGKMSGD----RHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 274 gVvIG~~~~IGdnV~Ig~-------gvtIgg~~~i~g~----~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d 342 (388)
.++||+++.|+++|+|.. +++||.+..+... ++++||++|+|+.++.|.++++||++|+||++++|.++
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~ 155 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF 155 (254)
T ss_pred eEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC
Confidence 355555555555555432 2334433333221 46789999999999999999999999999999999988
Q ss_pred C--CCCcEEEecCcEEeccCCCCccccCCCCccc
Q 047635 343 V--PPRTTAVGNPARLIGGKENPFMLDKIPSFTM 374 (388)
Q Consensus 343 V--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~ 374 (388)
+ .+++++.+ .+.+.+.........+.|++.+
T Consensus 156 v~Ig~~~~Ig~-~s~V~~~i~~~~~~~G~pa~~~ 188 (254)
T TIGR01852 156 VRIGRYAMIGG-LSAVSKDVPPYGLVEGNRARLR 188 (254)
T ss_pred cEECCCCEEee-eeeEeeecCCCcEEecCcCeec
Confidence 4 67765554 4555555554444456777654
No 80
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.19 E-value=1.8e-10 Score=103.93 Aligned_cols=97 Identities=26% Similarity=0.399 Sum_probs=69.0
Q ss_pred eeeeEecCCcEECCceEEcCC--CCcEECCCcEECCCcEE----cCCCEECCCCccCCC----CCCEECCCcEEccCCEE
Q 047635 252 VFSVDIHPGAKIGRGLLFDHA--TGVVVGETAVIGDNVSI----LHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCI 321 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~g--tgVvIG~~~~IGdnV~I----g~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~I 321 (388)
...+.||+++.|++++.|... ..++||+++.|+++++| ++.+.||.+..+... .+++||++|+||+++.|
T Consensus 18 ~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I 97 (167)
T cd00710 18 IGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVV 97 (167)
T ss_pred EeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEE
Confidence 445777777777777777652 24677777777777766 233444444333321 25899999999999998
Q ss_pred CCCcEECCCCEECCCCEECC-CCCCCcEE
Q 047635 322 LGNIKIGDGAKIGAGSVVLK-DVPPRTTA 349 (388)
Q Consensus 322 lg~V~IGd~v~IGagsVV~~-dVp~~s~V 349 (388)
. +++||++|+||++++|.+ .+++++++
T Consensus 98 ~-~~~Ig~~~~Ig~~s~i~~~~i~~~~~v 125 (167)
T cd00710 98 F-NAKVGDNCVIGHNAVVDGVEIPPGRYV 125 (167)
T ss_pred E-CCEECCCCEEcCCCEEeCCEeCCCCEE
Confidence 6 799999999999999975 56777765
No 81
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.19 E-value=3.3e-10 Score=99.12 Aligned_cols=93 Identities=27% Similarity=0.316 Sum_probs=64.4
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC--------Cc
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG--------NI 325 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg--------~V 325 (388)
++.|++++.|++++.|.. ++.|+.++.||+++.|+++++|+. +++||++|.|+.++.|.+ ++
T Consensus 7 ~~~i~~~~~Ig~~~~I~~--~~~i~~~~~IG~~~~I~~~~~I~~--------~~~IG~~~~I~~~~~igg~~~~~~~~~v 76 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMM--PSYVNIGAYVDEGTMVDSWATVGS--------CAQIGKNVHLSAGAVIGGVLEPLQATPV 76 (139)
T ss_pred CcEECCCCEECCCCEECC--CCEEccCCEECCCeEEcCCCEECC--------CCEECCCCEECCCCEECCcccccccCCe
Confidence 445666666666666655 566777777777777777777765 578888888888888863 48
Q ss_pred EECCCCEECCCCEECCCC--CCCcEEEecCcEEe
Q 047635 326 KIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLI 357 (388)
Q Consensus 326 ~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi 357 (388)
+||++|+||++++|..++ .+++ ++|.-+.+.
T Consensus 77 ~Ig~~~~Ig~~a~I~~gv~Ig~~~-~Ig~g~~V~ 109 (139)
T cd03350 77 IIEDDVFIGANCEVVEGVIVGKGA-VLAAGVVLT 109 (139)
T ss_pred EECCCCEECCCCEECCCCEECCCC-EEcCCCEEc
Confidence 888888888888887763 4443 333344443
No 82
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.18 E-value=1e-10 Score=114.29 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=61.4
Q ss_pred eeeeEecCCcEECCceEEcCCCC--------cEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATG--------VVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtg--------VvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg 323 (388)
..|..||+++.|..+++|..+.+ ..|+++|+||++|.|+.+++|++.-...+...+.||++|+||+||.|
T Consensus 163 RlGAyLGeGtvVm~~a~VN~nAgtIG~~iI~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I-- 240 (319)
T TIGR03535 163 RLGAHLAEGTTVMHEGFVNFNAGTLGASMVEGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL-- 240 (319)
T ss_pred eeccEECCCCEEcCCCEEccCceEecCceEEEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--
Confidence 34555555555555555544221 23455566666666666666554321122234899999999999999
Q ss_pred CcEECCCCEECCCCEECCCCC
Q 047635 324 NIKIGDGAKIGAGSVVLKDVP 344 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~dVp 344 (388)
++.||++|+||+|++|.++.+
T Consensus 241 GI~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 241 GISLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred CeEECCCCEECCCCEEeCCeE
Confidence 899999999999999998753
No 83
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.16 E-value=1.2e-10 Score=112.59 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=50.5
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccc
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTM 374 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~ 374 (388)
+++||++|.|+.++.+.++++||++|+||++++|.+++ .+++++.+ -+.+.++........+.|++..
T Consensus 123 ~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~-gs~V~~di~~~~~~~G~pa~~~ 192 (262)
T PRK05289 123 DCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGG-MSGVSQDVPPYVLAEGNPARLR 192 (262)
T ss_pred eEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEee-ecceeccCCCCeEEecccCeEe
Confidence 45666666667777777788999999999999999886 66665554 4888877766666678887653
No 84
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.14 E-value=1.4e-10 Score=114.73 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=10.6
Q ss_pred CcEECCCCEECCCCEECCCC
Q 047635 324 NIKIGDGAKIGAGSVVLKDV 343 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~dV 343 (388)
+|+|||+|.||+++.|-+..
T Consensus 202 ~V~Igd~VeIGanT~Idrga 221 (338)
T COG1044 202 RVIIGDDVEIGANTTIDRGA 221 (338)
T ss_pred eEEECCceEEcccceecccc
Confidence 35555555555555555543
No 85
>PRK10502 putative acyl transferase; Provisional
Probab=99.13 E-value=2.5e-10 Score=104.70 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=81.8
Q ss_pred eeeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEE---------
Q 047635 251 EVFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCI--------- 321 (388)
Q Consensus 251 ~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~I--------- 321 (388)
..++..||+++.|++++.|..+..+.||+++.||++|.|.... .++||++|.|+.++.|
T Consensus 48 r~~ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~------------~v~IG~~~~I~~~~~I~~~~h~~~~ 115 (182)
T PRK10502 48 RLFGAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLG------------EITIGAHCVISQKSYLCTGSHDYSD 115 (182)
T ss_pred HHhccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccC------------ceEECCCcEECCCeEEECCCCCCcC
Confidence 3577889999999998888765567777777777777665311 3455566655555554
Q ss_pred ------CCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccccc
Q 047635 322 ------LGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 322 ------lg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~ 376 (388)
.++++||++|+||++++|..++ .+++ ++|..+.+.+.........+.|++.++.
T Consensus 116 ~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~-vIga~svV~~~v~~~~v~~G~Pa~~ik~ 177 (182)
T PRK10502 116 PHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGA-VVGARSSVFKSLPANTICRGNPAVPIRP 177 (182)
T ss_pred CCcccccCCEEEcCCcEEcCCCEEcCCCEECCCC-EECCCCEEecccCCCcEEECCcceEecc
Confidence 3568999999999999998875 5654 5556788888877777778999976643
No 86
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.13 E-value=3e-10 Score=118.63 Aligned_cols=47 Identities=40% Similarity=0.661 Sum_probs=44.2
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEec
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGN 352 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~ 352 (388)
.++||++|+||++++|.++++||++++||+|++|.+|+|+++++++.
T Consensus 399 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~~ 445 (481)
T PRK14358 399 QSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVAR 445 (481)
T ss_pred CCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEec
Confidence 47999999999999999999999999999999999999999999863
No 87
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.12 E-value=3.8e-10 Score=105.55 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=77.9
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC--------------
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL-------------- 322 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il-------------- 322 (388)
+|+++.|...+.++. |.++.||++|.|+.+|+|.+. ..++||++|.||++++|.
T Consensus 58 ig~~~~I~~~~~~~~------g~ni~IG~~v~In~~~~I~d~------~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g 125 (203)
T PRK09527 58 VGENAWVEPPVYFSY------GSNIHIGRNFYANFNLTIVDD------YTVTIGDNVLIAPNVTLSVTGHPVHHELRKNG 125 (203)
T ss_pred cCCCcEEcCCEEEee------CCCcEEcCCcEECCCcEEecC------CCEEECCCCEECCCCEEEeCCCCCChhhcccc
Confidence 677777777776654 344555555555555555331 246888888888888885
Q ss_pred ----CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcccccc
Q 047635 323 ----GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDHT 377 (388)
Q Consensus 323 ----g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~~ 377 (388)
.+++||++|+||++++|..++ .++ .++|.-+.+.+.....+...+.|++.++..
T Consensus 126 ~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~-~vIgagsvV~kdvp~~~v~~G~PAk~i~~~ 185 (203)
T PRK09527 126 EMYSFPITIGNNVWIGSHVVINPGVTIGDN-SVIGAGSVVTKDIPPNVVAAGVPCRVIREI 185 (203)
T ss_pred ccccCCeEECCCcEECCCCEEcCCCEECCC-CEECCCCEEcccCCCCcEEEeeCCEEeccC
Confidence 248999999999999999885 554 466777888888777777789999776553
No 88
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.12 E-value=4.4e-10 Score=108.02 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=63.6
Q ss_pred CcEECCCcEECCCcEEcC-------CCEECCCCccCC----CCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC
Q 047635 274 GVVVGETAVIGDNVSILH-------NVTLGGTGKMSG----DRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 274 gVvIG~~~~IGdnV~Ig~-------gvtIgg~~~i~g----~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d 342 (388)
+++||+++.|+++|+|.. .++||+++.+.. ..+++||++|+|++++.|.++++||++|+||++++|.++
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 345555555555554432 133333332221 135788888888888888999999999999999999998
Q ss_pred C--CCCcEEEecCcEEeccCCCCccccCCCCc
Q 047635 343 V--PPRTTAVGNPARLIGGKENPFMLDKIPSF 372 (388)
Q Consensus 343 V--p~~s~VvG~PArvi~~~~~~~~~~~~p~~ 372 (388)
+ .+++++.| -+.+.+.........+.|+.
T Consensus 157 v~Ig~~~~Ig~-~s~V~~~i~~~~~~~G~~~~ 187 (254)
T cd03351 157 CRIGRHAMVGG-GSGVVQDVPPYVIAAGNRAR 187 (254)
T ss_pred cEECCCCEECc-CCEEeeecCCCeEEEccCCe
Confidence 6 67766544 46666655444444566664
No 89
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.09 E-value=5.7e-10 Score=98.91 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=70.4
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEc----CCCEECCCCccCCCCCCEECCCcEEccCCEECCC----
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSIL----HNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGN---- 324 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig----~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~---- 324 (388)
.+..+.+.+.||+|+.|.+ +.++..++.||++|.|. .+++|+. ++.||++|.|. +.+.++
T Consensus 6 ~~~~V~~~a~IG~GtvI~~--gavV~~~a~IG~~~iIn~~ig~~a~Igh--------d~~IG~~~~I~--~~l~G~~~~p 73 (147)
T cd04649 6 DADRVRLGAYLAEGTTVMH--EGFVNFNAGTLGNCMVEGRISSGVIVGK--------GSDVGGGASIM--GTLSGGGNNV 73 (147)
T ss_pred CCCEECCCCEECCCcEECC--CCEEccCCEECCCeEECCcccCCEEECC--------CCEECCCCEEE--EECCCCcccC
Confidence 4556777777787777777 77777778888888776 6666664 67777777777 556677
Q ss_pred cEECCCCEECCCCEECCCCCCCcEEEecCcEEecc
Q 047635 325 IKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGG 359 (388)
Q Consensus 325 V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~ 359 (388)
+.||++|+||+|++|...|++++ ++|..+.+++.
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~-vIGaGsvV~k~ 107 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNC-IVEAGLYVTAG 107 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCC-EECCCCEEeCC
Confidence 99999999999999965667765 45666766653
No 90
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.07 E-value=1.8e-09 Score=97.66 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=67.7
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEE---------------
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCI--------------- 321 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~I--------------- 321 (388)
+++++.|+.++.+..+.++.||++ |.|+++++|.+. ..++||++|+|+.+++|
T Consensus 45 ~~~~~~i~~~~~~~~~~~i~IG~~------v~I~~~~~i~~~------~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~ 112 (169)
T cd03357 45 VGENVYIEPPFHCDYGYNIHIGDN------FYANFNCTILDV------APVTIGDNVLIGPNVQIYTAGHPLDPEERNRG 112 (169)
T ss_pred cCCCCEEcCCEEEEeCCcCEECCC------ceEcCCEEEecc------CcEEECCCCEECCCCEEEeCCCCCChhHcccc
Confidence 566666666665544334444444 444444444321 14577777777777777
Q ss_pred ---CCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcc
Q 047635 322 ---LGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFT 373 (388)
Q Consensus 322 ---lg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~ 373 (388)
.++++||++|+||++++|..++ .++ .++|..+.+.+.....+...+.|++.
T Consensus 113 ~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~-~~VgagavV~~~vp~~~vv~G~PAkv 168 (169)
T cd03357 113 LEYAKPITIGDNVWIGGGVIILPGVTIGDN-SVIGAGSVVTKDIPANVVAAGNPARV 168 (169)
T ss_pred ceecCCcEeCCCEEECCCCEEeCCCEECCC-CEECCCCEEccccCCCcEEEccccEE
Confidence 4578999999999999998875 555 46677788888777776667888753
No 91
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.06 E-value=9.1e-10 Score=106.63 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=73.8
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEECC-----CcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC----
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVVGE-----TAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL---- 322 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvIG~-----~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il---- 322 (388)
..++.|.|++.|+++++|+. +++|.. ++.||++|+|..+++||. ++.||+||.|++++.|.
T Consensus 98 ~~~~rv~p~a~i~~ga~Ig~--~vvI~p~~Vniga~IGeGt~I~~~a~IG~--------~v~IG~nv~I~~g~~IgG~~e 167 (269)
T TIGR00965 98 KAGFRVVPGAAVRQGAFIAK--NVVLMPSYVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLE 167 (269)
T ss_pred cCCEEECCCcEECCCcEECC--CCEEeeeEEcCCcEECCCCEECCCcEECC--------CCEECCCCEEcCCcccCCCcc
Confidence 45899999999999999988 776654 356777777777777775 68999999999999886
Q ss_pred ----CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEE
Q 047635 323 ----GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARL 356 (388)
Q Consensus 323 ----g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArv 356 (388)
.+++||++|+||++++|..++ .+++ ++|..+.+
T Consensus 168 p~~~~~ViIgDnv~IGa~a~I~~GV~IG~ga-vIGaGavI 206 (269)
T TIGR00965 168 PLQANPTIIEDNCFIGARSEIVEGVIVEEGS-VISMGVFI 206 (269)
T ss_pred cCCCCCeEECCCCEECCCCEEcCCCEECCCC-EEeCCCEE
Confidence 458999999999999999885 4443 44444444
No 92
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=98.76 Aligned_cols=93 Identities=17% Similarity=0.260 Sum_probs=68.1
Q ss_pred EECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC------------------CCcEECCCCEECCCC
Q 047635 276 VVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL------------------GNIKIGDGAKIGAGS 337 (388)
Q Consensus 276 vIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il------------------g~V~IGd~v~IGags 337 (388)
.+|.++.||+++.|+.+|+|++. ..++|||+|.|+.+++|. ++++||++|+||+++
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~------~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a 142 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDV------CPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRA 142 (183)
T ss_pred eecCCcEEcCCcEECCceEEecC------ceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCC
Confidence 44555555555666666655542 135888888888888884 679999999999999
Q ss_pred EECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcccc
Q 047635 338 VVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMD 375 (388)
Q Consensus 338 VV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~ 375 (388)
+|..++ .+++ ++|.-+.+.+.........+.|++.++
T Consensus 143 ~I~~gv~IG~~~-vIgagsvV~~di~~~~i~~G~PAr~i~ 181 (183)
T PRK10092 143 VINPGVTIGDNV-VVASGAVVTKDVPDNVVVGGNPARIIK 181 (183)
T ss_pred EECCCCEECCCC-EECCCCEEccccCCCcEEEecCcEEee
Confidence 999875 5554 457778888877777777899997664
No 93
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.05 E-value=2.1e-09 Score=99.98 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=63.3
Q ss_pred EECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEecc
Q 047635 282 VIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGG 359 (388)
Q Consensus 282 ~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~ 359 (388)
+||++|.|+++|+|+... ..+++||+++.||.++++ .+++||++|+||++++|..++ .+++ ++|.-+-+.+.
T Consensus 51 ~Ig~~~~Ig~~~~I~~~~----~~~siIg~~~~Ig~~a~i-~g~vIG~~v~IG~ga~V~~g~~IG~~s-~Vgags~V~~~ 124 (196)
T PRK13627 51 IVQAGANLQDGCIMHGYC----DTDTIVGENGHIGHGAIL-HGCVIGRDALVGMNSVIMDGAVIGEES-IVAAMSFVKAG 124 (196)
T ss_pred EECCCCEECCCCEEeCCC----CCCCEECCCCEECCCcEE-eeEEECCCCEECcCCccCCCcEECCCC-EEcCCCEEeCC
Confidence 566677777777775432 225899999999999976 578899999999999998763 5554 44555666654
Q ss_pred C--CCCccccCCCCccccc
Q 047635 360 K--ENPFMLDKIPSFTMDH 376 (388)
Q Consensus 360 ~--~~~~~~~~~p~~~~~~ 376 (388)
. .......+.|++.++.
T Consensus 125 ~~ip~~~~~~G~Pa~~~~~ 143 (196)
T PRK13627 125 FQGEKRQLLMGTPARAVRS 143 (196)
T ss_pred cCcCCCcEEEecCCEEecc
Confidence 4 2344447888866554
No 94
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=1.5e-09 Score=97.13 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=12.0
Q ss_pred CcEECCCCEECCCCEECCC
Q 047635 324 NIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~d 342 (388)
++.||++++||.+++|..+
T Consensus 129 ~~iIg~~~~ig~~~~i~~g 147 (163)
T cd05636 129 GAIIGDGVKTGINVSLNPG 147 (163)
T ss_pred CcEEcCCeEECCCcEECCC
Confidence 4666666666666666654
No 95
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.04 E-value=2.5e-09 Score=95.25 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=72.8
Q ss_pred ecCCcEECCceEEcCCCCcEECC---CcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEE
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGE---TAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~---~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
|..++.||+++.|+. +++|.. .+.||++|.|+++|+|.. ....+++||++|+||.++.+. ++.||++|+|
T Consensus 15 i~g~v~IG~~~~I~~--~~~i~~~~~~i~IG~~~~Ig~~~~I~~----~~~~~~~Ig~~~~Ig~~~~i~-~~~Ig~~~~I 87 (155)
T cd04745 15 LIGDVIIGKNCYIGP--HASLRGDFGRIVIRDGANVQDNCVIHG----FPGQDTVLEENGHIGHGAILH-GCTIGRNALV 87 (155)
T ss_pred EEccEEECCCCEECC--CcEEeCCCCcEEECCCCEECCCCEEee----cCCCCeEEcCCCEECCCcEEE-CCEECCCCEE
Confidence 333444555555544 444433 256666777777776632 112358999999999999764 6999999999
Q ss_pred CCCCEECCC--CCCCcEEEecCcEEec--cCCCCccccCCCCcccccc
Q 047635 334 GAGSVVLKD--VPPRTTAVGNPARLIG--GKENPFMLDKIPSFTMDHT 377 (388)
Q Consensus 334 GagsVV~~d--Vp~~s~VvG~PArvi~--~~~~~~~~~~~p~~~~~~~ 377 (388)
|++++|..+ +.++++ +|.-+.+.+ .........+.|++.++..
T Consensus 88 g~~~~I~~g~~Ig~~~~-Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~ 134 (155)
T cd04745 88 GMNAVVMDGAVIGEESI-VGAMAFVKAGTVIPPRSLIAGSPAKVIREL 134 (155)
T ss_pred CCCCEEeCCCEECCCCE-ECCCCEeCCCCEeCCCCEEecCCceEeccC
Confidence 999999876 366554 455555544 2333444468898877653
No 96
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.04 E-value=2.1e-09 Score=97.08 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=42.1
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
.+.||++++|++++.|.++++||++|+||++++|...+-....++|..+.+.
T Consensus 64 ~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 64 SVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEe
Confidence 5789999999999999999999999999999999765433334556666664
No 97
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.03 E-value=6.2e-10 Score=109.36 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=33.1
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV 343 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV 343 (388)
+.||++|+||+||+| ++.||++|+||+|++|..+.
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagT 285 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGT 285 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCc
Confidence 899999999999999 99999999999999998763
No 98
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.02 E-value=2.5e-09 Score=98.88 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=72.9
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC----------
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL---------- 322 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il---------- 322 (388)
..+.+|+++.++.++.++. .......||++|.|++++.|... ..++||++|.||.++.|.
T Consensus 42 ~~I~iG~~v~i~~~~ri~~----~~~~~i~IG~~v~Ig~~v~I~~~------~~v~IG~~v~Ig~~v~I~~~~hg~~~~~ 111 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDA----FGRGKLFFGDNVQVNDYVHIACI------ESITIGRDTLIASKVFITDHNHGSFKHS 111 (192)
T ss_pred CeEEECCceEECCCeEEEe----cCCCeEEECCCCEECCCcEEccC------ceEEECCCCEECCCeEEECCCCcccccc
Confidence 3455666666666666532 11223455555555555555421 135677777777766664
Q ss_pred -----------------CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcccccc
Q 047635 323 -----------------GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDHT 377 (388)
Q Consensus 323 -----------------g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~~ 377 (388)
++++||++|+||++++|..++ .++ .++|.-+.+.+.........+.|++.++.-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~-~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~ 184 (192)
T PRK09677 112 DDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNG-CIVGANSVVTKSIPENTVIAGNPAKIIKKY 184 (192)
T ss_pred ccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCC-CEECCCCEECcccCCCcEEEecCCEEEecc
Confidence 347899999999999998874 444 456667888777777777789999776654
No 99
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.02 E-value=3.7e-09 Score=94.63 Aligned_cols=85 Identities=25% Similarity=0.396 Sum_probs=44.1
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCC---CCCEECCCcEEccCCEECCCcEECCC
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGD---RHPKIGNGVLVGAGTCILGNIKIGDG 330 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg~V~IGd~ 330 (388)
.+.||+++.|++++.|.+ .++||+++.|++++.|..++.|+.++.+... .+++||+++.|+.++.+ +++.||++
T Consensus 17 ~v~ig~~~~I~~~a~i~~--~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i-~~siIg~~ 93 (163)
T cd05636 17 PVWIGEGAIVRSGAYIEG--PVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV-GDSVLGEN 93 (163)
T ss_pred CeEEcCCCEECCCCEEeC--CeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE-ecCEECCC
Confidence 345555555555555544 4455555544444444433333333222211 13466666666666654 45667777
Q ss_pred CEECCCCEECC
Q 047635 331 AKIGAGSVVLK 341 (388)
Q Consensus 331 v~IGagsVV~~ 341 (388)
+.|++++++..
T Consensus 94 ~~I~~~~~i~~ 104 (163)
T cd05636 94 VNLGAGTITAN 104 (163)
T ss_pred CEECCCcEEcc
Confidence 77777776643
No 100
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.01 E-value=2.5e-09 Score=99.97 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=75.6
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC------------
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL------------ 322 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il------------ 322 (388)
+.|++++.|. ++.|+. +++||++++|. ++.||.++.|+.++.+. +++||++|.|+.++.|.
T Consensus 9 ~~I~~~a~i~-~~~IG~--~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~---~~~IG~~~~I~~~v~I~~~~h~~~~~s~~ 81 (204)
T TIGR03308 9 PTLHPTAELT-ESKLGR--YTEIGERTRLR-EVALGDYSYVMRDCDII---YTTIGKFCSIAAMVRINATNHPMERPTLH 81 (204)
T ss_pred CeECCCcEEe-ccEeCC--CcEECCCcEEe-CCEECCCCEECCCcEEe---eeEECCCCEECCCCEECCCCCCCCccccc
Confidence 3455555553 244443 44444444433 33444444444433332 46888888888888774
Q ss_pred -------------------------CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcccc
Q 047635 323 -------------------------GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMD 375 (388)
Q Consensus 323 -------------------------g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~ 375 (388)
.++.||++|+||.+++|..++ .++ .++|..+.+.+.........+.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~-~~I~~gs~v~~~i~~~~~~~G~Pa~~~~ 160 (204)
T TIGR03308 82 HFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNG-AVIAAGAVVTKDVAPYTIVAGVPAKLIR 160 (204)
T ss_pred ccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCC-CEECCCCEECCCCCCCcEEEecCchHhh
Confidence 488899999999999999885 454 5667778888888877777899998776
Q ss_pred c
Q 047635 376 H 376 (388)
Q Consensus 376 ~ 376 (388)
+
T Consensus 161 ~ 161 (204)
T TIGR03308 161 R 161 (204)
T ss_pred h
Confidence 4
No 101
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=3.5e-09 Score=95.57 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=79.2
Q ss_pred eeEecCCcEECCceEEcCCCCcEEC---CCcEECCCcEEcCCCEECCCCcc--CCCCCCEECCCcEEccCCEECCCcEEC
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVG---ETAVIGDNVSILHNVTLGGTGKM--SGDRHPKIGNGVLVGAGTCILGNIKIG 328 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG---~~~~IGdnV~Ig~gvtIgg~~~i--~g~~~~~IGd~V~IGaga~Ilg~V~IG 328 (388)
+..|.+++.||+++.|.+ +++|. ..++||++|.|+++|+|...... .....+.||+++.|+.++.|.+ ++||
T Consensus 11 ~a~i~g~v~IG~~~~I~~--~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~-~~IG 87 (164)
T cd04646 11 ESEIRGDVTIGPGTVVHP--RATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA-LKIG 87 (164)
T ss_pred CCEEcCceEECCCCEEcC--CeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-eEEC
Confidence 344555666777777766 66663 34688888888888888753221 1123478999999999999875 9999
Q ss_pred CCCEECCCCEECCCC--CCCcEEEecCcEEecc--CCCCccccCCCCcccc
Q 047635 329 DGAKIGAGSVVLKDV--PPRTTAVGNPARLIGG--KENPFMLDKIPSFTMD 375 (388)
Q Consensus 329 d~v~IGagsVV~~dV--p~~s~VvG~PArvi~~--~~~~~~~~~~p~~~~~ 375 (388)
++|+||++++|..++ .+++ ++|.-+.+.+. .+......+.|+..+.
T Consensus 88 d~~~Ig~~a~I~~gv~Ig~~~-~IgagsvV~~~~~i~~~~vi~g~~~~~~~ 137 (164)
T cd04646 88 NNNVFESKSFVGKNVIITDGC-IIGAGCKLPSSEILPENTVIYGADCLRRT 137 (164)
T ss_pred CCCEEeCCCEECCCCEECCCC-EEeCCeEECCCcEECCCeEEeCCceEEEe
Confidence 999999999998874 4444 45555665553 3344444566765543
No 102
>PLN02296 carbonate dehydratase
Probab=98.99 E-value=4.6e-09 Score=102.21 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=73.3
Q ss_pred CcEECCceEEcCCCCcEECCC---cEECCCcEEcCCCEECCCCc-cC-CCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 260 GAKIGRGLLFDHATGVVVGET---AVIGDNVSILHNVTLGGTGK-MS-GDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~---~~IGdnV~Ig~gvtIgg~~~-i~-g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
.+.||+++.|.. +++|... ++||++|.|+++|+|..... .. ...+++||++|+||.||+| .+++||++|+||
T Consensus 70 ~V~IG~~~~I~~--gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI-~g~~Igd~v~IG 146 (269)
T PLN02296 70 DVQVGRGSSIWY--GCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL-HGCTVEDEAFVG 146 (269)
T ss_pred ceEECCCCEECC--CCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee-cCCEECCCcEEC
Confidence 344555555554 4455443 36777777777777753211 11 1236899999999999987 569999999999
Q ss_pred CCCEECCCC--CCCcEEEecCcEEecc--CCCCccccCCCCccccc
Q 047635 335 AGSVVLKDV--PPRTTAVGNPARLIGG--KENPFMLDKIPSFTMDH 376 (388)
Q Consensus 335 agsVV~~dV--p~~s~VvG~PArvi~~--~~~~~~~~~~p~~~~~~ 376 (388)
.|++|..++ .+++++ |.-+.+.+. ........+.|++.++.
T Consensus 147 ~ga~I~~gv~Ig~~a~I-gagSvV~~~~~I~~~~~~~G~PA~~ir~ 191 (269)
T PLN02296 147 MGATLLDGVVVEKHAMV-AAGALVRQNTRIPSGEVWAGNPAKFLRK 191 (269)
T ss_pred CCcEECCCeEECCCCEE-CCCCEEecCCEeCCCeEEeccCcEEeCC
Confidence 999999874 666544 444555544 23344446788866544
No 103
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.99 E-value=4.3e-09 Score=108.15 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=51.2
Q ss_pred CCEECCCcEEccCCEE-------CCCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCc
Q 047635 306 HPKIGNGVLVGAGTCI-------LGNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSF 372 (388)
Q Consensus 306 ~~~IGd~V~IGaga~I-------lg~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~ 372 (388)
+++||++|.||+++++ ..+++||++|+||+|++|..++ .+++++ |..+.+.+.........+.|..
T Consensus 355 ~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i-g~~s~v~~~v~~~~~~~g~~~~ 429 (446)
T PRK14353 355 DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYI-ASGSVITEDVPDDALALGRARQ 429 (446)
T ss_pred CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEE-CCCCEECccCCCCCEEEecCce
Confidence 3578888899998877 3379999999999999999875 676655 8888888877666655565543
No 104
>PLN02472 uncharacterized protein
Probab=98.98 E-value=4.2e-09 Score=101.27 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=75.7
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCC---cEECCCcEEcCCCEECCCCcc--CCCCCCEECCCcEEccCCEECCCcEEC
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGET---AVIGDNVSILHNVTLGGTGKM--SGDRHPKIGNGVLVGAGTCILGNIKIG 328 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~---~~IGdnV~Ig~gvtIgg~~~i--~g~~~~~IGd~V~IGaga~Ilg~V~IG 328 (388)
+..+..+++||+++.|+. +++|..+ .+||+++.|+++|+|...... .-..+++||++|.||.+++| .+++||
T Consensus 71 ~a~i~G~V~Ig~~a~I~~--gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L-~~~~Ig 147 (246)
T PLN02472 71 NVVLAGQVTVWDGASVWN--GAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL-RSCTIE 147 (246)
T ss_pred CCEEecCEEECCCCEEcC--CCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE-CCeEEc
Confidence 444444566666666665 4444333 678888888888888643211 11136899999999999988 489999
Q ss_pred CCCEECCCCEECCCC--CCCcEEEecCcEEe--ccCCCCccccCCCCccccc
Q 047635 329 DGAKIGAGSVVLKDV--PPRTTAVGNPARLI--GGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 329 d~v~IGagsVV~~dV--p~~s~VvG~PArvi--~~~~~~~~~~~~p~~~~~~ 376 (388)
++|.||.+++|..+. ..++++ |.-+.+- .....+....+.|++.++.
T Consensus 148 d~v~IG~~svI~~gavIg~~~~I-g~gsvV~~g~~Ip~g~~~~G~PA~~~~~ 198 (246)
T PLN02472 148 PECIIGQHSILMEGSLVETHSIL-EAGSVLPPGRRIPTGELWAGNPARFVRT 198 (246)
T ss_pred CCCEECCCCEECCCCEECCCCEE-CCCCEECCCCEeCCCCEEEecCCEEecc
Confidence 999999999998763 555433 3333333 1223334446888876543
No 105
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.97 E-value=4.4e-09 Score=97.59 Aligned_cols=90 Identities=18% Similarity=0.314 Sum_probs=58.1
Q ss_pred cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEec
Q 047635 281 AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIG 358 (388)
Q Consensus 281 ~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~ 358 (388)
++||++|.|+++|+|.+. ...+++||+++.||.+++| .+++||++|+||.+++|..+ |.++++ +|..+.+..
T Consensus 48 i~Ig~~t~Ig~~~~I~~~----~~~~siIg~~~~Ig~~a~I-~~siIg~~~~IG~ga~I~~g~~IG~~s~-Vgags~V~~ 121 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGF----PGQDTVVEENGHVGHGAIL-HGCIVGRNALVGMNAVVMDGAVIGENSI-VAASAFVKA 121 (192)
T ss_pred eEECCCCEECCCeEEecc----CCCCCeECCCCEECCCCEE-cCCEECCCCEECCCcccCCCeEECCCCE-EcCCCEECC
Confidence 344555666666655321 1236899999999999976 46999999999999988775 355543 344454443
Q ss_pred c--CCCCccccCCCCccccc
Q 047635 359 G--KENPFMLDKIPSFTMDH 376 (388)
Q Consensus 359 ~--~~~~~~~~~~p~~~~~~ 376 (388)
. ........+.|++.++.
T Consensus 122 ~~~ip~~~l~~G~Pak~i~~ 141 (192)
T TIGR02287 122 GAEMPAQYLVVGSPAKVIRE 141 (192)
T ss_pred CCEECCCeEEEccCCEEecc
Confidence 2 22333446778876654
No 106
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.97 E-value=3.5e-09 Score=103.07 Aligned_cols=81 Identities=30% Similarity=0.401 Sum_probs=63.6
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEE-----CCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC---
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVV-----GETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG--- 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvI-----G~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg--- 323 (388)
..++.|.+++.|+.+++|+. +++| +.++.||++|+|+.+++||. .+.||++|.|++++.|.+
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~--gavI~p~~V~iGa~Ig~gt~I~~~a~IG~--------~a~IG~nv~I~~gv~I~g~~~ 170 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAP--NVVLMPSYVNIGAYVDEGTMVDTWATVGS--------CAQIGKNVHLSGGVGIGGVLE 170 (272)
T ss_pred cCCcEEcCCeEECCCCEECC--CcEEEEEEECCCCEECCCcEEccccEECC--------CCEECCCcEECCCccCCCCcc
Confidence 45788999999999999988 4444 44567777777777777765 578999999999988765
Q ss_pred -----CcEECCCCEECCCCEECCC
Q 047635 324 -----NIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 324 -----~V~IGd~v~IGagsVV~~d 342 (388)
+++||++|+||++++|..+
T Consensus 171 ~~~~~~viIgDnv~IGa~s~I~~G 194 (272)
T PRK11830 171 PLQANPVIIEDNCFIGARSEVVEG 194 (272)
T ss_pred ccCcCCeEEcCCCEECCCCEEcCC
Confidence 5888888888888888655
No 107
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.94 E-value=4.9e-09 Score=95.45 Aligned_cols=109 Identities=27% Similarity=0.396 Sum_probs=75.1
Q ss_pred CcEECCceEEcCCCCcEECCC---cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 260 GAKIGRGLLFDHATGVVVGET---AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~---~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
.++||+++.|++ +++|..+ ..||+++.|-+||.|..... ..++||++|.||.+|.|-+ |+||++|.||.|
T Consensus 29 dV~Ig~~vsIw~--~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~----~p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmg 101 (176)
T COG0663 29 DVRIGAGVSIWP--GAVLRGDVEPIRIGARTNIQDGVVIHADPG----YPVTIGDDVTIGHGAVVHG-CTIGDNVLIGMG 101 (176)
T ss_pred eEEECCCCEECC--ceEEEccCCceEECCCceecCCeEEecCCC----CCeEECCCcEEcCccEEEE-eEECCCcEEecC
Confidence 345666666666 5555544 36666666666666654221 4689999999999999987 999999999999
Q ss_pred CEECCC--CCCCcEEEecCcEEeccC--CCCccccCCCCccccc
Q 047635 337 SVVLKD--VPPRTTAVGNPARLIGGK--ENPFMLDKIPSFTMDH 376 (388)
Q Consensus 337 sVV~~d--Vp~~s~VvG~PArvi~~~--~~~~~~~~~p~~~~~~ 376 (388)
|+|..+ |..++ ++|..|-+...+ +......+.|++.+++
T Consensus 102 A~vldga~IG~~~-iVgAgalV~~~k~~p~~~L~~G~Pak~~r~ 144 (176)
T COG0663 102 ATVLDGAVIGDGS-IVGAGALVTPGKEIPGGSLVVGSPAKVVRP 144 (176)
T ss_pred ceEeCCcEECCCc-EEccCCcccCCcCCCCCeEeecCcceeeec
Confidence 999985 56665 445556665432 2222336788876654
No 108
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=9.4e-09 Score=107.18 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCEECCCcEEccCCEEC-------CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccc-cCCCCcccc
Q 047635 306 HPKIGNGVLVGAGTCIL-------GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFML-DKIPSFTMD 375 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Il-------g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~-~~~p~~~~~ 375 (388)
+++||++|.||+|+++. .+++||++|+||.+++|..++ .++ .++|..+.+.+....+... .+.|+..+.
T Consensus 374 ~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~-~~igags~v~~~v~~~~~~~~~~p~~~~~ 452 (482)
T PRK14352 374 DADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDG-AYTGAGTVIREDVPPGALAVSEGPQRNIE 452 (482)
T ss_pred ccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCC-cEECCCCEEcCCCCCCcEEEecccccccc
Confidence 46889999999999885 359999999999999999885 444 5677777787776655543 467877765
Q ss_pred c
Q 047635 376 H 376 (388)
Q Consensus 376 ~ 376 (388)
+
T Consensus 453 ~ 453 (482)
T PRK14352 453 G 453 (482)
T ss_pred c
Confidence 4
No 109
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.91 E-value=6.8e-09 Score=106.72 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=53.6
Q ss_pred CCEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccc
Q 047635 306 HPKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTM 374 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~ 374 (388)
++.||++|.||+++.+.. +++||++|+||++++|..++ .++ .++|..+.+.+.......+.+.|....
T Consensus 365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~-~~v~~~~~v~~~~~~~~~~~g~~~~~~ 441 (450)
T PRK14360 365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGED-VTVAAGSTITKDVPDNSLAIARSRQVI 441 (450)
T ss_pred CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCC-CEECCCCEECccCCCCCEEEeccceee
Confidence 467899999999988743 79999999999999999875 554 566777888888777776677775543
No 110
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.7e-09 Score=113.56 Aligned_cols=126 Identities=27% Similarity=0.385 Sum_probs=74.0
Q ss_pred cceeeeccchhHHHHHHHHHHHHHHhcchH-------HHH-----HHHh------ccceeeeeEecCCcEECCceEEcCC
Q 047635 211 YAHCLLNFKGFLACQAHRIAHRLWLQGRKV-------LAL-----LIQN------RVSEVFSVDIHPGAKIGRGLLFDHA 272 (388)
Q Consensus 211 ~~~~ll~~~gf~al~~~Ria~~l~~~g~~~-------la~-----~i~~------~~~~~~gV~Ig~~a~IG~gv~I~~g 272 (388)
|...+-.|..|.......+.+|.++.-... +.. +-.. .+...-.+.||.++.||.|+.|.
T Consensus 272 yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-- 349 (673)
T KOG1461|consen 272 YAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-- 349 (673)
T ss_pred hhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCccceehhhccccceEEecccccccCCCeee--
Confidence 444556677777777778888877753211 000 0000 11111223344444444444443
Q ss_pred CCcEECCCcEECCCcE-----EcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCC
Q 047635 273 TGVVVGETAVIGDNVS-----ILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 273 tgVvIG~~~~IGdnV~-----Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~d 342 (388)
+.+||.+|.||.||. |++||+||+++.+. ++.|||+|.|++||++.++++||.+++||.+-++.++
T Consensus 350 -NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~---~aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 350 -NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID---HAIICDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKN 420 (673)
T ss_pred -cceecCCCEecCceEEeeeeeecCcEECCCceEe---eeEeecCcEeCCCcccCCCcEEeeeeEeCCCcccccc
Confidence 567888888888775 47777777776665 5677777777777777777777776666666555443
No 111
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.91 E-value=8.4e-09 Score=105.74 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=45.1
Q ss_pred CEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCc
Q 047635 307 PKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSF 372 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~ 372 (388)
+.||++|.||+++++.. +++||++|+||.+++|..++ .+++ ++|..+.+.+..+......+.|..
T Consensus 366 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~-~i~~g~~v~~~v~~~~~~~~~~~~ 439 (451)
T TIGR01173 366 AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGA-TIAAGSTVTKDVPEGALAISRARQ 439 (451)
T ss_pred eEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCC-EEccCCEECccCCCCcEEEccCce
Confidence 56777777777777653 58899999999999888774 5554 445567777766665555555543
No 112
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.89 E-value=1.7e-08 Score=90.20 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=72.0
Q ss_pred EecCCcEECCceEEcCCCCcEECCC---cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCE
Q 047635 256 DIHPGAKIGRGLLFDHATGVVVGET---AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 256 ~Ig~~a~IG~gv~I~~gtgVvIG~~---~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
.|.+.+.||+++.|.+ +++|... ++||++|.|+++|.|.... ..+++||+++.|+.++.+ .++.||++|+
T Consensus 14 ~i~~~v~iG~~~~I~~--~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~----~~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~ 86 (154)
T cd04650 14 YVIGDVVIGELTSVWH--YAVIRGDNDSIYIGKYSNVQENVSIHTDH----GYPTEIGDYVTIGHNAVV-HGAKVGNYVI 86 (154)
T ss_pred EEEeeEEECCCCEEcC--CeEEEcCCCcEEECCCCEECCCCEEEeCC----CCCeEECCCCEECCCcEE-ECcEECCCCE
Confidence 3444455555555555 5555543 4777777777777775421 125899999999999988 5789999999
Q ss_pred ECCCCEECCCC--CCCcEEEecCcEEec--cCCCCccccCCCCccccc
Q 047635 333 IGAGSVVLKDV--PPRTTAVGNPARLIG--GKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 333 IGagsVV~~dV--p~~s~VvG~PArvi~--~~~~~~~~~~~p~~~~~~ 376 (388)
||+++++..++ .+++++. .-+.+.. +........+.|+..++.
T Consensus 87 Ig~~~~i~~~~~Ig~~~~vg-~~~~v~~g~~i~~~~v~~G~pa~~~~~ 133 (154)
T cd04650 87 VGMGAILLNGAKIGDHVIIG-AGAVVTPGKEIPDYSLVLGVPAKVVRK 133 (154)
T ss_pred EcCCCEEeCCCEECCCCEEC-CCCEECCCcEeCCCCEEeccCceEecc
Confidence 99999997663 5554443 3333332 222333336777766544
No 113
>PRK10191 putative acyl transferase; Provisional
Probab=98.86 E-value=1.3e-08 Score=90.64 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=53.4
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCC-------cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCc
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGET-------AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNI 325 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~-------~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V 325 (388)
.++.|+++++||+++.|+| +++||+. ++||++|.|+.++++.+ +++||++++||+|++|.+++
T Consensus 60 ~~i~I~~~~~IGd~~~I~h--~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~--------~v~IG~~~~Igags~V~~dv 129 (146)
T PRK10191 60 YAVVINKNVVAGDDFTIRH--GVTIGNRGADNMACPHIGNGVELGANVIILG--------DITIGNNVTVGAGSVVLDSV 129 (146)
T ss_pred CeEEECCCcEECCCCEECC--CCEECCCCcCCCCCCEECCCcEEcCCCEEeC--------CCEECCCCEECCCCEECCcc
Confidence 3677788888888888887 7777754 57777777777777765 68899999999999888764
Q ss_pred EECCCCEECCCC
Q 047635 326 KIGDGAKIGAGS 337 (388)
Q Consensus 326 ~IGd~v~IGags 337 (388)
. .+...+|..+
T Consensus 130 ~-~~~~v~G~pA 140 (146)
T PRK10191 130 P-DNALVVGEKA 140 (146)
T ss_pred C-CCcEEEccCc
Confidence 3 3334444444
No 114
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.86 E-value=2.1e-08 Score=78.21 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=38.9
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
||++++|++++.|. +.+||+++.||+++.|. ++.|+. +++||++++|. +++|.++++||+++.|+++
T Consensus 2 ig~~~~I~~~~~i~---~s~ig~~~~ig~~~~i~-~s~i~~--------~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 68 (79)
T cd05787 2 IGRGTSIGEGTTIK---NSVIGRNCKIGKNVVID-NSYIWD--------DVTIEDGCTIH-HSIVADGAVIGKGCTIPPG 68 (79)
T ss_pred ccCCCEECCCCEEe---ccEECCCCEECCCCEEe-CcEEeC--------CCEECCCCEEe-CcEEcCCCEECCCCEECCC
Confidence 57777777777775 35556655555555553 344433 34555555543 4455555555555555555
Q ss_pred CEEC
Q 047635 337 SVVL 340 (388)
Q Consensus 337 sVV~ 340 (388)
++|.
T Consensus 69 ~~v~ 72 (79)
T cd05787 69 SLIS 72 (79)
T ss_pred CEEe
Confidence 5443
No 115
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.85 E-value=2.2e-08 Score=89.86 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=57.2
Q ss_pred CcEECCceEEcCCCCcEECCC---cEECCCcEEcCCCEECCCCccCCC----CCCEECCCcEEccCCEE-----CCCcEE
Q 047635 260 GAKIGRGLLFDHATGVVVGET---AVIGDNVSILHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCI-----LGNIKI 327 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~---~~IGdnV~Ig~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~I-----lg~V~I 327 (388)
+..||+++.|++ +++|... +.||++|.|+++|+|.+....... ..++||++++|+.++++ ..++.|
T Consensus 21 ~I~ig~~~~I~~--~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 21 NIVLNGKTIIQS--DVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CEEECCceEEcC--CCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 677788888877 5566654 689999999999999865433221 35689999999999975 445556
Q ss_pred CCCCEECCCCEECCC
Q 047635 328 GDGAKIGAGSVVLKD 342 (388)
Q Consensus 328 Gd~v~IGagsVV~~d 342 (388)
|++++|+.+++|..+
T Consensus 99 g~~~~Ig~~~~I~~~ 113 (161)
T cd03359 99 GKNCVIGRRCIIKDC 113 (161)
T ss_pred CCCCEEcCCCEECCC
Confidence 666666666655554
No 116
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.84 E-value=1.4e-08 Score=104.53 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCEECCCcEEccCCEEC-------CCcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccc
Q 047635 306 HPKIGNGVLVGAGTCIL-------GNIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTM 374 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Il-------g~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~ 374 (388)
+++||++|.||+|+++. .+++||++|+||++++|..++ .+++ ++|.-+.+.+.......+.+.|....
T Consensus 358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~-~i~ag~~v~~~v~~~~~~~g~~~~~~ 434 (448)
T PRK14357 358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGA-LIGAGSVITEDVPPYSLALGRARQIV 434 (448)
T ss_pred CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCC-EEcCCCEECCcCCCCcEEEccccEEe
Confidence 35777788888877653 368899999999999998875 5554 45556777777666666666665443
No 117
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.83 E-value=2.7e-08 Score=102.84 Aligned_cols=68 Identities=21% Similarity=0.391 Sum_probs=49.4
Q ss_pred CCEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccc-cCCCCccc
Q 047635 306 HPKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFML-DKIPSFTM 374 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~-~~~p~~~~ 374 (388)
++.||++|.||+++++.. +++|||+|+||.+++|...+ .+++ ++|..+.+.+.......+ .+.|.+..
T Consensus 369 ~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~-~i~~gs~v~~~v~~~~~~~~~~~~~~~ 446 (456)
T PRK09451 369 DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGA-TIGAGTTVTRDVAENELVISRVPQRHI 446 (456)
T ss_pred ccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCC-EECCCCEEccccCCCCEEEeccCceec
Confidence 458888888888887742 48899999999999998875 5554 455567777776665555 45665554
No 118
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.82 E-value=3.5e-08 Score=87.53 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=44.0
Q ss_pred EECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC--CCCcE
Q 047635 282 VIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV--PPRTT 348 (388)
Q Consensus 282 ~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV--p~~s~ 348 (388)
+||++|.|+.+++|.+.. ..+++||++++|+.+++|. ++.||++++||+++.|..++ .+++.
T Consensus 40 ~IG~~~~I~~~~~I~~~~----~~~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ 103 (153)
T cd04645 40 RIGERTNIQDGSVLHVDP----GYPTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSI 103 (153)
T ss_pred EECCCCEECCCcEEecCC----CCCeEEcCCcEECCCcEEe-eeEECCCCEECCCCEEcCCCEECCCCE
Confidence 555555555555554311 1247999999999999986 58999999999999998663 55543
No 119
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=3.9e-08 Score=101.77 Aligned_cols=70 Identities=31% Similarity=0.507 Sum_probs=36.6
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
+.|++++.||+++.|++ +++|+++++||++|.|+.+|+|++ ++||++|.|+++++| .++.||+++.||
T Consensus 263 ~~i~~~v~ig~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~---------~~Ig~~~~I~~~~~i-~~~~i~~~~~ig 330 (459)
T PRK14355 263 TYIDRGVVIGRDTTIYP--GVCISGDTRIGEGCTIEQGVVIKG---------CRIGDDVTVKAGSVL-EDSVVGDDVAIG 330 (459)
T ss_pred eEECCCeEEcCCCEEeC--CcEEeCCCEECCCCEECCCCEEeC---------CEEcCCCEECCCeEE-eCCEECCCCEEC
Confidence 44666666666666665 555565666666666655555542 344444444444443 233333333333
Q ss_pred CC
Q 047635 335 AG 336 (388)
Q Consensus 335 ag 336 (388)
++
T Consensus 331 ~~ 332 (459)
T PRK14355 331 PM 332 (459)
T ss_pred CC
Confidence 33
No 120
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=2.5e-08 Score=101.87 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCCEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCcccc-CCCCccc
Q 047635 305 RHPKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLD-KIPSFTM 374 (388)
Q Consensus 305 ~~~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~-~~p~~~~ 374 (388)
.+++||++|.||+++++.+ +++||++|+||+++.|...+ .++ .++|..+.+.+....+.... +.|...+
T Consensus 341 ~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~-~~i~~g~~v~~~v~~~~~~~~~~~~~~~ 419 (430)
T PRK14359 341 GDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDN-VLIAAGSTVTKDVPKGSLAISRAPQKNI 419 (430)
T ss_pred cCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCC-CEECCCCEEccccCCCcEEEeccCceeh
Confidence 3579999999999998864 48999999999999999875 454 56666788888776666553 4665554
Q ss_pred c
Q 047635 375 D 375 (388)
Q Consensus 375 ~ 375 (388)
+
T Consensus 420 ~ 420 (430)
T PRK14359 420 K 420 (430)
T ss_pred h
Confidence 3
No 121
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.81 E-value=4e-08 Score=81.98 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=57.9
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCC-CCCCEECCCcEEccCCEECCCcEECCCCE
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSG-DRHPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g-~~~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
.+.|++++.|++++.|.. .+.||+++.||+++.|..+++||.++.+.. -.+++|++++.|+.++.| +++.||+++.
T Consensus 11 ~v~ig~~~~I~~~~~i~g--~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~l-g~siIg~~v~ 87 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEG--PVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFL-GHSYLGSWCN 87 (101)
T ss_pred CEEECCCCEECCCCEEeC--CCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEE-eeeEECCCCE
Confidence 467788888887777765 567777777766666666666665444421 125677777788888776 5888888888
Q ss_pred ECCCCEE
Q 047635 333 IGAGSVV 339 (388)
Q Consensus 333 IGagsVV 339 (388)
||++++.
T Consensus 88 ig~~~~~ 94 (101)
T cd05635 88 LGAGTNN 94 (101)
T ss_pred ECCCcee
Confidence 8888765
No 122
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.78 E-value=1.7e-08 Score=99.43 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=50.4
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCE-ECCCCccC-CCCCCEECCCcEEccCC----EECCC----cE
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVT-LGGTGKMS-GDRHPKIGNGVLVGAGT----CILGN----IK 326 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvt-Igg~~~i~-g~~~~~IGd~V~IGaga----~Ilg~----V~ 326 (388)
|+.++.|++.+.|.. ++.||++++|.+++.|+.++. +|+..... -...++||++|.||.++ ++.|+ |.
T Consensus 175 vp~gVrI~~sa~Vr~--gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~ 252 (341)
T TIGR03536 175 VPKGVRIADTARVRL--GAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVIS 252 (341)
T ss_pred ccCCcEEcCCCeEcC--CcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEE
Confidence 444444444444443 444444444444444444444 33222200 01134555555555554 45667 99
Q ss_pred ECCCCEECCCCEECCCCCCCcEEEecCcEEe
Q 047635 327 IGDGAKIGAGSVVLKDVPPRTTAVGNPARLI 357 (388)
Q Consensus 327 IGd~v~IGagsVV~~dVp~~s~VvG~PArvi 357 (388)
||++|+||+||+|.-.|.++++ +|..+.++
T Consensus 253 IGe~~lIGagA~IGI~IGd~~i-IGAGavVt 282 (341)
T TIGR03536 253 VGEGCLLGANAGIGIPLGDRCT-VEAGLYIT 282 (341)
T ss_pred ECCCcEECCCCEEeeEECCCCE-ECCCCEEe
Confidence 9999999999999433455443 34444443
No 123
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.75 E-value=6.2e-08 Score=101.30 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCC
Q 047635 306 HPKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKEN 362 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~ 362 (388)
+++||++|.||.++++.. +++||++|+||++++|...+ ++++++ |..+.+.+....
T Consensus 374 ~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i-~~gs~v~~~v~~ 438 (481)
T PRK14358 374 DVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFI-AAGSAVHDDVPE 438 (481)
T ss_pred CeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEE-CCCCEEecccCC
Confidence 478888888888887753 57899999999999888764 665544 344555554433
No 124
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.74 E-value=6.8e-08 Score=87.83 Aligned_cols=110 Identities=27% Similarity=0.395 Sum_probs=73.2
Q ss_pred eEecCCcEECCceEEcCC-CCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC-----------
Q 047635 255 VDIHPGAKIGRGLLFDHA-TGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL----------- 322 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~g-tgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il----------- 322 (388)
..+...+.+.....++-+ ..+.+|.++.|+.+|.+.. + ..++||+++.|+.++.|.
T Consensus 47 ~~~~~~~~i~~~~~~~~~~~~~~iG~~~~i~~~~~~~~----~--------~~i~ig~~~~i~~~v~i~~~~h~~~~~~~ 114 (190)
T COG0110 47 IKIGEVAVIRPPVRIDLGEKNLTIGDLCFIGVNVVILV----G--------EGITIGDNVVVGPNVTIYTNSHPGDFVTA 114 (190)
T ss_pred cccCCccEECCCEEEecCCcceEECCeeEEcCCcEEEe----c--------CCeEECCCceECCCcEEecCCCCCChhhc
Confidence 334444566666555422 3455555555555554311 1 134566666666666552
Q ss_pred --------CCcEECCCCEECCCCEECCCC-CCCcEEEecCcEEeccCCCCccccCCCCccccc
Q 047635 323 --------GNIKIGDGAKIGAGSVVLKDV-PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 323 --------g~V~IGd~v~IGagsVV~~dV-p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~ 376 (388)
++++||++||||+|++|+.+| -.+..++|..+.+.++.+......++|++..+.
T Consensus 115 ~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~ 177 (190)
T COG0110 115 NIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRK 177 (190)
T ss_pred ccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEe
Confidence 359999999999999999995 445578899999999888887778999976543
No 125
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.72 E-value=8.7e-08 Score=80.20 Aligned_cols=101 Identities=21% Similarity=0.174 Sum_probs=53.3
Q ss_pred CCcEECCceEEcCCCCcEEC--CCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 259 PGAKIGRGLLFDHATGVVVG--ETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 259 ~~a~IG~gv~I~~gtgVvIG--~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
.+.+||+++.|++ +++|. ..++||++|.|++++.|...... ....+ ...+.++++||++|+||++
T Consensus 2 ~~i~iG~~~~I~~--~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~-----~~~~~------~~~~~~~v~Ig~~~~ig~~ 68 (107)
T cd05825 2 WNLTIGDNSWIGE--GVWIYNLAPVTIGSDACISQGAYLCTGSHD-----YRSPA------FPLITAPIVIGDGAWVAAE 68 (107)
T ss_pred ceEEECCCCEECC--CCEEeeCCceEECCCCEECCCeEeecCCCC-----CCcCc------cceecCCEEECCCCEECCC
Confidence 4567888888877 56664 35777888888777777542211 11111 1122344555555555555
Q ss_pred CEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCcc
Q 047635 337 SVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFT 373 (388)
Q Consensus 337 sVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~ 373 (388)
++|..++ .+++ ++|.-+.+.+.........+.|++.
T Consensus 69 ~~i~~g~~Ig~~~-~i~~gs~v~~~~~~~~~~~G~Pa~~ 106 (107)
T cd05825 69 AFVGPGVTIGEGA-VVGARSVVVRDLPAWTVYAGNPAVP 106 (107)
T ss_pred CEECCCCEECCCC-EECCCCEEeCcCCCCCEEECCccEe
Confidence 5554442 3332 3333455545445455556777653
No 126
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.72 E-value=9e-08 Score=73.69 Aligned_cols=68 Identities=29% Similarity=0.402 Sum_probs=52.3
Q ss_pred EecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCC--------CEECCCCccCCCCCCEECCCcEEccCCEECCCcEE
Q 047635 256 DIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHN--------VTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKI 327 (388)
Q Consensus 256 ~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~g--------vtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~I 327 (388)
.|++++.|+.++.|.. .++||+++.|++++.|+.. ++|++ ++.||.++.|..++.|..++.|
T Consensus 2 ~ig~~~~i~~~~~i~~--~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~--------~~~v~~~~~i~~~~~ig~~~~i 71 (78)
T cd00208 2 FIGEGVKIHPKAVIRG--PVVIGDNVNIGPGAVIGAATGPNEKNPTIIGD--------NVEIGANAVIHGGVKIGDNAVI 71 (78)
T ss_pred EECCCeEECCCCEEeC--cEEECCCCEECCCCEEEeccCCCccCCcEECC--------CcEECCCCEEeCCCEECCCCEE
Confidence 4777788888887765 6788888888888888754 67765 6778888888878888888888
Q ss_pred CCCCEE
Q 047635 328 GDGAKI 333 (388)
Q Consensus 328 Gd~v~I 333 (388)
|+++.|
T Consensus 72 ~~~s~v 77 (78)
T cd00208 72 GAGAVV 77 (78)
T ss_pred CcCcEe
Confidence 887776
No 127
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.71 E-value=7.6e-08 Score=76.14 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=12.3
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEE
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKI 333 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~I 333 (388)
++||+++.||+++.+.++..||+++.|
T Consensus 52 sii~~~~~v~~~~~~~~~~~ig~~~~i 78 (80)
T cd05824 52 SIVGWNSTVGRWTRLENVTVLGDDVTI 78 (80)
T ss_pred CEEeCCCEECCCcEEecCEEECCceEE
Confidence 344444444444444444444444444
No 128
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.71 E-value=9.1e-08 Score=98.62 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=35.4
Q ss_pred CEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCC
Q 047635 307 PKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIP 370 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p 370 (388)
++||++|.||+|+.+.. +++||++++||.+++|..++ .+++ ++|.-+.+.+..+....+.+.|
T Consensus 369 ~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~-~v~~~~~v~~~~~~~~~~~~~~ 440 (458)
T PRK14354 369 AEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNA-YIAAGSTITKDVPEDALAIARA 440 (458)
T ss_pred cccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCC-EECCCCEECCCCCCCCEEEecc
Confidence 34555555555555432 46777777777777777664 4443 4455566666555444434433
No 129
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=98.70 E-value=8.7e-08 Score=87.88 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=42.2
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEEC-----CCCccCCC---CCCEECCCcEEccCCEECCCcE
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLG-----GTGKMSGD---RHPKIGNGVLVGAGTCILGNIK 326 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIg-----g~~~i~g~---~~~~IGd~V~IGaga~Ilg~V~ 326 (388)
+.+++.++||+++.|.+ ++.|+++++||+||.|++++.|+ .+..+... .+++||+++.||+++.|..++.
T Consensus 10 ~~~~~~v~ig~~~~I~~--~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~ 87 (193)
T cd03353 10 TYIDGDVEIGVDVVIDP--GVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTV 87 (193)
T ss_pred EEEcCCeEECCCcEECC--CCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccE
Confidence 33444444444444444 33333444444444444333333 22222111 1356777777777777766777
Q ss_pred ECCCCEECCCCEE
Q 047635 327 IGDGAKIGAGSVV 339 (388)
Q Consensus 327 IGd~v~IGagsVV 339 (388)
||+++.|++++.+
T Consensus 88 Ig~~~~Ig~~~~i 100 (193)
T cd03353 88 LGEGVHIGNFVEI 100 (193)
T ss_pred ECCCCEECCcEEE
Confidence 7777776666554
No 130
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.70 E-value=3.2e-08 Score=93.73 Aligned_cols=36 Identities=28% Similarity=0.201 Sum_probs=20.4
Q ss_pred CEECCCcEEccCCEECC-------CcEECCCCEECCCCEECCC
Q 047635 307 PKIGNGVLVGAGTCILG-------NIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg-------~V~IGd~v~IGagsVV~~d 342 (388)
.+||+++.|-..++|.. -++|||++++-+.+-|..|
T Consensus 82 l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHD 124 (260)
T COG1043 82 LIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHD 124 (260)
T ss_pred EEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeecc
Confidence 56677776666666622 2455665555555555444
No 131
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.68 E-value=7.5e-08 Score=94.40 Aligned_cols=98 Identities=20% Similarity=0.321 Sum_probs=64.6
Q ss_pred eeeEecCCcEECCceEEcCCCCcEECCCcEECCCc-EEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC----C---
Q 047635 253 FSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNV-SILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG----N--- 324 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV-~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg----~--- 324 (388)
.++.|.++..+..|++|+. |++|...++|.-|+ +||.+ .|. +.+ +++++|||+|.|++++.|++ +
T Consensus 152 ~gVRI~~~~rVRlGAyLGe--GtvVm~~a~VN~nAgtIG~~-iI~--g~I--~HdvvIGd~~~IgpGvsI~G~LsGg~~~ 224 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAE--GTTVMHEGFVNFNAGTLGAS-MVE--GRI--SAGVVVGDGSDIGGGASIMGTLSGGGKE 224 (319)
T ss_pred CccEECCCceeeeccEECC--CCEEcCCCEEccCceEecCc-eEE--EEE--ccCCEECCCCEECCCceecceecCCCcc
Confidence 3555666666666555555 55555555555555 45553 331 222 24689999999999999555 8
Q ss_pred -cEECCCCEECCCCEECCCCCCCcEEEecCcEEec
Q 047635 325 -IKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIG 358 (388)
Q Consensus 325 -V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~ 358 (388)
|.||++|+||+||+|.-.|.+++ ++|..+.+++
T Consensus 225 pV~IGe~~~IGagA~IGI~IGd~~-VVGAGaVVtk 258 (319)
T TIGR03535 225 VISIGERCLLGANSGLGISLGDDC-VVEAGLYVTA 258 (319)
T ss_pred cEEECCCcEECCCCEECeEECCCC-EECCCCEEeC
Confidence 99999999999999944455554 3455565554
No 132
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=3.9e-08 Score=94.52 Aligned_cols=86 Identities=26% Similarity=0.370 Sum_probs=59.8
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECC--------Cc
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG--------NI 325 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg--------~V 325 (388)
+..+-.+++||+|+.+.+ +..|.=++.++..++|-.++++|+ ..+||+||.||.||.|+| ++
T Consensus 114 ~a~VR~ga~i~~gtvvM~--~sfVNigA~~~~gtMVd~~as~G~--------~a~VGkn~higgGa~I~GVLep~~a~Pv 183 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMP--ESFVNIGAGTGEGTMVDGRASVGS--------CAQVGKNSHIGGGASIGGVLEPLQANPV 183 (271)
T ss_pred ccEEeeccEECCCcEEcc--cceEEECcccCcceEEeeeeeeec--------cEEECCCcccCCcceEeEEecCCCCCCe
Confidence 333444444444444444 223333466777777777778876 579999999999999955 78
Q ss_pred EECCCCEECCCCEECCCC--CCCcEE
Q 047635 326 KIGDGAKIGAGSVVLKDV--PPRTTA 349 (388)
Q Consensus 326 ~IGd~v~IGagsVV~~dV--p~~s~V 349 (388)
.|||+|.|||+|++..+| .+|+++
T Consensus 184 ~IgdncliGAns~~veGV~vGdg~VV 209 (271)
T COG2171 184 IIGDNCLIGANSEVVEGVIVGDGCVV 209 (271)
T ss_pred EECCccEeccccceEeeeEeCCCcEE
Confidence 999999999999877764 455543
No 133
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.65 E-value=1.8e-07 Score=74.14 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=17.3
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEEC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVL 340 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~ 340 (388)
.+|++++.||.++.| .++.|++++.|++++.+.
T Consensus 34 s~i~~~~~ig~~~~l-~~svi~~~~~i~~~~~v~ 66 (81)
T cd04652 34 CVIMDNVTIEDGCTL-ENCIIGNGAVIGEKCKLK 66 (81)
T ss_pred cEEeCCCEECCCCEE-eccEEeCCCEECCCCEEc
Confidence 345555555555554 345555555555555553
No 134
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.64 E-value=1.9e-07 Score=72.73 Aligned_cols=64 Identities=34% Similarity=0.546 Sum_probs=31.4
Q ss_pred ECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEE
Q 047635 263 IGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVV 339 (388)
Q Consensus 263 IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV 339 (388)
||+++.|+. ++.|+ ++.||++|.|++++.|. +..|++++.|+.++.|. ++.|++++.|+.++.+
T Consensus 2 ig~~~~I~~--~~~i~-~s~ig~~~~ig~~~~i~---------~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 65 (79)
T cd05787 2 IGRGTSIGE--GTTIK-NSVIGRNCKIGKNVVID---------NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTI 65 (79)
T ss_pred ccCCCEECC--CCEEe-ccEECCCCEECCCCEEe---------CcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEE
Confidence 444444444 44443 24445555555444443 23555555555555543 4555555555555544
No 135
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.63 E-value=2e-07 Score=73.94 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=28.6
Q ss_pred EEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCC
Q 047635 288 SILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGS 337 (388)
Q Consensus 288 ~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGags 337 (388)
.|++++.|+.+..+. +++||+++.||+++.| .++.||+++.|++++
T Consensus 35 ~i~~~~~ig~~~~l~---~svi~~~~~i~~~~~v-~~~ii~~~~~i~~~~ 80 (81)
T cd04652 35 VIMDNVTIEDGCTLE---NCIIGNGAVIGEKCKL-KDCLVGSGYRVEAGT 80 (81)
T ss_pred EEeCCCEECCCCEEe---ccEEeCCCEECCCCEE-ccCEECCCcEeCCCC
Confidence 344444554443332 4677888888888776 367777777776653
No 136
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.60 E-value=4.7e-07 Score=75.53 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=46.8
Q ss_pred CcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEc---cCCEECCCcEECCCCEECCC
Q 047635 260 GAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVG---AGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IG---aga~Ilg~V~IGd~v~IGag 336 (388)
.++|++++.|.. ++.|+..+.||+++.|+.+++|++ ++.||++|.|| .+++|.++++|++++.|+ +
T Consensus 11 ~v~ig~~~~I~~--~~~i~g~v~IG~~~~Ig~~~~I~~--------~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg-~ 79 (101)
T cd05635 11 PIYIGKDAVIEP--FAVIEGPVYIGPGSRVKMGARIYG--------NTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLG-H 79 (101)
T ss_pred CEEECCCCEECC--CCEEeCCCEECCCCEECCCCEEeC--------cCEECCCCEECCEECccEEcCCCEecCcCEEe-e
Confidence 367777777766 666766777777777777777765 56777777776 455555555555555554 4
Q ss_pred CEECCC
Q 047635 337 SVVLKD 342 (388)
Q Consensus 337 sVV~~d 342 (388)
++|..+
T Consensus 80 siIg~~ 85 (101)
T cd05635 80 SYLGSW 85 (101)
T ss_pred eEECCC
Confidence 444433
No 137
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.59 E-value=8.7e-08 Score=84.23 Aligned_cols=107 Identities=21% Similarity=0.353 Sum_probs=69.0
Q ss_pred eEecCCcEECCceEEcC-CCCcEECCCcEECCCcEEcCCC------------EECCCCccCCC---CCCEECCCcEEccC
Q 047635 255 VDIHPGAKIGRGLLFDH-ATGVVVGETAVIGDNVSILHNV------------TLGGTGKMSGD---RHPKIGNGVLVGAG 318 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~-gtgVvIG~~~~IGdnV~Ig~gv------------tIgg~~~i~g~---~~~~IGd~V~IGag 318 (388)
+.+...+.+-.|++|.. -.++.+|..|+++.++.|.+.- +||+...+..+ .-..||..|.+|.+
T Consensus 34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkn 113 (184)
T KOG3121|consen 34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKN 113 (184)
T ss_pred EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccc
Confidence 44555566666666654 2466777777766666553221 22221111111 02467777777777
Q ss_pred CEECCCcEECCCCEECCCCEECCC--CCCCcEEEecCcEEeccCC
Q 047635 319 TCILGNIKIGDGAKIGAGSVVLKD--VPPRTTAVGNPARLIGGKE 361 (388)
Q Consensus 319 a~Ilg~V~IGd~v~IGagsVV~~d--Vp~~s~VvG~PArvi~~~~ 361 (388)
++|+.++++-|.|.|-.++|+..+ +|+.+++.|+|+.+.+..+
T Consensus 114 aviGrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P 158 (184)
T KOG3121|consen 114 AVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEP 158 (184)
T ss_pred eeEcCceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCc
Confidence 777777777777778888888776 6999999999999998654
No 138
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.58 E-value=4.8e-07 Score=70.88 Aligned_cols=65 Identities=35% Similarity=0.528 Sum_probs=32.9
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
|++++.|++++.|. + +.||++|.|+.++.|. +++||+++.|+.++.|. ++.|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~--------~-s~ig~~~~Ig~~~~i~---------~svi~~~~~i~~~~~i~-~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIK--------N-SVIGDNVRIGDGVTIT---------NSILMDNVTIGANSVIV-DSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEe--------C-CEECCCCEECCCCEEe---------CCEEeCCCEECCCCEEE-CCEECCCCEECCC
Confidence 44555555544443 2 4444444444444443 24556666666665543 4455555555555
Q ss_pred CEEC
Q 047635 337 SVVL 340 (388)
Q Consensus 337 sVV~ 340 (388)
+.+.
T Consensus 63 ~~i~ 66 (79)
T cd03356 63 VRVV 66 (79)
T ss_pred CEEc
Confidence 5543
No 139
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.58 E-value=3.6e-07 Score=71.63 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=42.2
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCc-----EECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETA-----VIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGD 329 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~-----~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd 329 (388)
..|++++.|++ +.|++ ++.||+++ +|++++.|+.++.|. +++|++++.|+.++.|..+..||+
T Consensus 6 ~~I~~~~~i~~-s~ig~--~~~Ig~~~~i~~svi~~~~~i~~~~~i~---------~svv~~~~~i~~~~~i~~~~~ig~ 73 (79)
T cd03356 6 TVIGENAIIKN-SVIGD--NVRIGDGVTITNSILMDNVTIGANSVIV---------DSIIGDNAVIGENVRVVNLCIIGD 73 (79)
T ss_pred cEECCCCEEeC-CEECC--CCEECCCCEEeCCEEeCCCEECCCCEEE---------CCEECCCCEECCCCEEcCCeEECC
Confidence 44555555543 44444 44444444 445555555555553 368888888888888877788888
Q ss_pred CCEEC
Q 047635 330 GAKIG 334 (388)
Q Consensus 330 ~v~IG 334 (388)
++.|+
T Consensus 74 ~~~i~ 78 (79)
T cd03356 74 DVVVE 78 (79)
T ss_pred CeEEC
Confidence 87776
No 140
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.58 E-value=3.1e-07 Score=76.67 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=41.9
Q ss_pred cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCC
Q 047635 281 AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDV 343 (388)
Q Consensus 281 ~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dV 343 (388)
+.|+++|.|+.++.|. +..|++++.||.++.+ .++.||+++.|+++++|..+.
T Consensus 29 svi~~~~~Ig~~~~I~---------~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 29 SVLFRGVRVGSGSVVE---------DSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred CEEeCCCEECCCCEEE---------EeEEcCCCEECCCCEE-EeEEECCCCEECCCCEECCCc
Confidence 4555555555555553 4789999999999998 589999999999999998874
No 141
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.58 E-value=4e-07 Score=71.99 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=36.7
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
|++++.||+++.| |++++||++|.|+.++.|.+ ..|++++.|+.++.|. ++.||+++.|+++
T Consensus 2 i~~~~~I~~~~~i--------~~~~~Ig~~~~Ig~~~~i~~---------sii~~~~~i~~~~~i~-~sii~~~~~v~~~ 63 (80)
T cd05824 2 IDPSAKIGKTAKI--------GPNVVIGPNVTIGDGVRLQR---------CVILSNSTVRDHSWVK-SSIVGWNSTVGRW 63 (80)
T ss_pred cCCCCEECCCCEE--------CCCCEECCCCEECCCcEEee---------eEEcCCCEECCCCEEe-CCEEeCCCEECCC
Confidence 4555555555444 44445555555555555542 4666666666666654 4566666666666
Q ss_pred CEE
Q 047635 337 SVV 339 (388)
Q Consensus 337 sVV 339 (388)
+.+
T Consensus 64 ~~~ 66 (80)
T cd05824 64 TRL 66 (80)
T ss_pred cEE
Confidence 555
No 142
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.56 E-value=3.4e-07 Score=94.44 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=48.1
Q ss_pred eeeEecCCcEECCceEEcCCC----CcEECCCcEECCCcEE-----cCCCEECCCCccCCCCCCEECCCcEEccCCEECC
Q 047635 253 FSVDIHPGAKIGRGLLFDHAT----GVVVGETAVIGDNVSI-----LHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 253 ~gV~Ig~~a~IG~gv~I~~gt----gVvIG~~~~IGdnV~I-----g~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg 323 (388)
..+.|++++.|++++.|..+. +++||+++.||++|.| +++|.|+..+.+ .+++||++|.||.++.|.+
T Consensus 262 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i---~~~~ig~~~~Ig~~~~i~~ 338 (456)
T PRK14356 262 ESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHL---EGAEVGDGCSVGPYARLRP 338 (456)
T ss_pred CcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEE---cccceecccEECCceEECC
Confidence 345666666666666665511 3445555555544433 333333332222 2467777777777777777
Q ss_pred CcEECCCCEECCCCEE
Q 047635 324 NIKIGDGAKIGAGSVV 339 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV 339 (388)
+++||++|.||.++.+
T Consensus 339 ~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 339 GAVLEEGARVGNFVEM 354 (456)
T ss_pred CCEECCCCEecCCcee
Confidence 7777777777776544
No 143
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.4e-07 Score=99.32 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=29.2
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCc-----EECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEE
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETA-----VIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCI 321 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~-----~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~I 321 (388)
+.+...+.+|.++.|+. |..||.++ +||.||.||.+|.|.+ ..||+||+||.||.|
T Consensus 322 v~~~~~~~v~~~~~ig~--gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~---------S~iw~~v~Igdnc~I 382 (673)
T KOG1461|consen 322 VVLSHSVIVGANVVIGA--GTKIGSGSKISNSVIGANCRIGSNVRIKN---------SFIWNNVTIGDNCRI 382 (673)
T ss_pred ceehhhccccceEEecc--cccccCCCeeecceecCCCEecCceEEee---------eeeecCcEECCCceE
Confidence 34444455556666655 44555543 4555555555554432 355555555555543
No 144
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.47 E-value=1.9e-06 Score=71.03 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=53.0
Q ss_pred CcEECCceEEcCCCCcEECC--CcEECCCcEEcCCCEECCCCccCCCC-----CCEECCCcEEccCCEECCCcEECCCCE
Q 047635 260 GAKIGRGLLFDHATGVVVGE--TAVIGDNVSILHNVTLGGTGKMSGDR-----HPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~--~~~IGdnV~Ig~gvtIgg~~~i~g~~-----~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
++.||++++|+. ++.|.. .+.||++|.|+++|.|.......... +..+..++.||.++.|..++.|++++.
T Consensus 1 ~v~Ig~~~~I~~--~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ 78 (109)
T cd04647 1 NISIGDNVYIGP--GCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVT 78 (109)
T ss_pred CeEECCCcEECC--CCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCE
Confidence 367999999988 777877 89999999999999998752211111 123455566666666666666666666
Q ss_pred ECCCCEEC
Q 047635 333 IGAGSVVL 340 (388)
Q Consensus 333 IGagsVV~ 340 (388)
||.++++.
T Consensus 79 ig~~~~i~ 86 (109)
T cd04647 79 IGDGAVVG 86 (109)
T ss_pred ECCCCEEC
Confidence 66665554
No 145
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.43 E-value=2e-06 Score=70.84 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=11.1
Q ss_pred CCCcEECCCCEECCCCEECC
Q 047635 322 LGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 322 lg~V~IGd~v~IGagsVV~~ 341 (388)
.+++.||++|+|++++.+..
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CCCCEECCCcEEcCCCEEEC
Confidence 44445666666665555544
No 146
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.43 E-value=1.1e-06 Score=87.87 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=40.6
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCC--CCCEECCCcEEccCCEECCCcEECCCCE
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGD--RHPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~--~~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
+.|++++.| .++.|.. +++||++|.|+ ++.|+++|+||.++.+.+. .+++|++++.|+.++....++.||+++.
T Consensus 255 ~~i~~~~~i-~~~~i~~--~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~ 330 (353)
T TIGR01208 255 VVVGEGAKI-VNSVIRG--PAVIGEDCIIE-NSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKKVR 330 (353)
T ss_pred EEECCCCEE-eCCEEEC--CcEECCCCEEc-CcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCCCE
Confidence 344444444 3333333 34555555443 3344444444443333210 1234444444444431123455555555
Q ss_pred ECCCCEECCCCCCCcEEEecCcEE
Q 047635 333 IGAGSVVLKDVPPRTTAVGNPARL 356 (388)
Q Consensus 333 IGagsVV~~dVp~~s~VvG~PArv 356 (388)
|+.++.+..+ ...++|.++++
T Consensus 331 i~~~~~~~~~---~~~~~g~~~~~ 351 (353)
T TIGR01208 331 IKGNRRRPGD---LRLTIGDYSQV 351 (353)
T ss_pred ECCCcccccc---cceEEcCCcee
Confidence 5555444322 23556666543
No 147
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.39 E-value=3.1e-06 Score=75.08 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=64.7
Q ss_pred cEECCceEEcCCCCcEEC-CCcEECCCcEEcCCCEECCC-CccCC--CCCC-EECCCcE----EccCCEECCCcEECCCC
Q 047635 261 AKIGRGLLFDHATGVVVG-ETAVIGDNVSILHNVTLGGT-GKMSG--DRHP-KIGNGVL----VGAGTCILGNIKIGDGA 331 (388)
Q Consensus 261 a~IG~gv~I~~gtgVvIG-~~~~IGdnV~Ig~gvtIgg~-~~i~g--~~~~-~IGd~V~----IGaga~Ilg~V~IGd~v 331 (388)
..||++++|+.+ ...++ ..+.||++|.|+++|+|... .+... ...+ .++++.. ......+.++++||++|
T Consensus 2 ~~iG~~s~i~~~-~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 80 (145)
T cd03349 2 ISVGDYSYGSGP-DCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDV 80 (145)
T ss_pred EEEeCceeeCCC-CceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCC
Confidence 579999999763 33444 47999999999999999875 22211 0001 1222211 11122234456666666
Q ss_pred EECCCCEECCCC--CCCcEEEecCcEEeccCCCCccccCCCCccccc
Q 047635 332 KIGAGSVVLKDV--PPRTTAVGNPARLIGGKENPFMLDKIPSFTMDH 376 (388)
Q Consensus 332 ~IGagsVV~~dV--p~~s~VvG~PArvi~~~~~~~~~~~~p~~~~~~ 376 (388)
+||++++|..++ .++ .++|.-+.+.+.........+.|++.++.
T Consensus 81 ~Ig~~~~i~~gv~Ig~~-~vIgags~V~~~v~~~~v~~G~Pa~~i~~ 126 (145)
T cd03349 81 WIGHGATILPGVTIGDG-AVIAAGAVVTKDVPPYAIVGGNPAKVIRY 126 (145)
T ss_pred EECCCCEEeCCCEECCC-CEECCCCEEccccCCCeEEEecCCEeehh
Confidence 666666665543 333 33444455555555555556788766654
No 148
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.34 E-value=1.5e-06 Score=88.97 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=54.7
Q ss_pred cCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCC
Q 047635 258 HPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGS 337 (388)
Q Consensus 258 g~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGags 337 (388)
.+++.||++|.|. ++.|. +++||++|.|+.+|.|. +++|+++|.||.+|+|. ++.|+++|.||+++
T Consensus 313 ~~~~~ig~~~~I~---~~~i~-~svIg~~~~I~~~~~i~---------~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 378 (407)
T PRK00844 313 AQDSLVSAGSIIS---GATVR-NSVLSPNVVVESGAEVE---------DSVLMDGVRIGRGAVVR-RAILDKNVVVPPGA 378 (407)
T ss_pred EEeCEEcCCCEEC---CeeeE-cCEECCCCEECCCCEEe---------eeEECCCCEECCCCEEE-eeEECCCCEECCCC
Confidence 3456667777664 45554 37777777777777775 36899999999999884 68999999999999
Q ss_pred EECCC
Q 047635 338 VVLKD 342 (388)
Q Consensus 338 VV~~d 342 (388)
+|..+
T Consensus 379 ~i~~~ 383 (407)
T PRK00844 379 TIGVD 383 (407)
T ss_pred EECCC
Confidence 99876
No 149
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.33 E-value=3.2e-06 Score=84.60 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=50.0
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECC----CcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCE
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGD----NVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGd----nV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
+.+.+.|+.++.+. +++||++|+||+ ++.|+.+|+|+.++.+. +++|++++.||.++.| .+++||+++.
T Consensus 280 ~~~~~~i~~~~~i~---~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~---~sii~~~~~v~~~~~l-~~~ivg~~~~ 352 (361)
T TIGR02091 280 LPPAKFVDSDAQVV---DSLVSEGCIISGATVSHSVLGIRVRIGSGSTVE---DSVIMGDVGIGRGAVI-RNAIIDKNVR 352 (361)
T ss_pred CCCceEecCCCEEE---CCEECCCCEECCCEEEccEECCCCEECCCCEEe---eeEEeCCCEECCCCEE-eeeEECCCCE
Confidence 44455555554332 344555555555 55555555555544443 4788899999998887 5888888999
Q ss_pred ECCCCEEC
Q 047635 333 IGAGSVVL 340 (388)
Q Consensus 333 IGagsVV~ 340 (388)
|+++++|.
T Consensus 353 i~~~~~i~ 360 (361)
T TIGR02091 353 IGEGVVIG 360 (361)
T ss_pred ECCCCEeC
Confidence 88888764
No 150
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.26 E-value=8.4e-07 Score=59.83 Aligned_cols=33 Identities=45% Similarity=0.796 Sum_probs=24.3
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEECC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~ 341 (388)
++||++|+||+++.| +++|||+|.|++|++|.+
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 578999999999998 599999999999998864
No 151
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.23 E-value=5e-06 Score=83.90 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred cEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECC
Q 047635 281 AVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 281 ~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~ 341 (388)
++||++|.|+.+|.|. +++|+++|.||.++.|. +++||+++.||.++.+..
T Consensus 309 s~ig~~~~I~~~~~i~---------~svi~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 309 SVLFQGVQVGEGSVVK---------DSVIMPGAKIGENVVIE-RAIIGENAVIGDGVIIGG 359 (380)
T ss_pred eEEcCCCEECCCCEEE---------CCEEeCCCEECCCeEEe-EEEECCCCEECCCCEEcC
Confidence 3444444444444442 46899999999988874 588888888888877754
No 152
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.20 E-value=8.5e-06 Score=81.95 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCcEECCceEEcCCCCcEECCCcEEC---CCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECC
Q 047635 259 PGAKIGRGLLFDHATGVVVGETAVIG---DNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGA 335 (388)
Q Consensus 259 ~~a~IG~gv~I~~gtgVvIG~~~~IG---dnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGa 335 (388)
+.+.||+++.|. +++||++|+|+ .++.|+++|+|++++.+. +++|+++|.|++++.+ .++.||+++.||+
T Consensus 277 ~p~~i~~~~~i~---~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~---~sii~~~~~I~~~~~i-~~~ii~~~~~v~~ 349 (369)
T TIGR02092 277 PPTYYAENSKVE---NSLVANGCIIEGKVENSILSRGVHVGKDALIK---NCIIMQRTVIGEGAHL-ENVIIDKDVVIEP 349 (369)
T ss_pred CCcEEcCCCEEE---EeEEcCCCEEeeEEeCCEECCCCEECCCCEEE---eeEEeCCCEECCCCEE-EEEEECCCCEECC
Confidence 445555555552 34455544444 223455555555444443 4678888888888876 4578888888888
Q ss_pred CCEECCC
Q 047635 336 GSVVLKD 342 (388)
Q Consensus 336 gsVV~~d 342 (388)
++.+..+
T Consensus 350 ~~~~~~~ 356 (369)
T TIGR02092 350 NVKIAGT 356 (369)
T ss_pred CCEeCCC
Confidence 8777443
No 153
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.20 E-value=4.3e-06 Score=86.47 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=26.3
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGG 297 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg 297 (388)
+.|++++.|+ ++.|. +.+||+++.||++|.|.+++.+|.
T Consensus 316 s~I~~~~~I~-~~~I~---~svI~~~~~Ig~~~~I~~sii~g~ 354 (436)
T PLN02241 316 SIISHGCFLR-ECKIE---HSVVGLRSRIGEGVEIEDTVMMGA 354 (436)
T ss_pred eEEcCCcEEc-CeEEE---eeEEcCCCEECCCCEEEEeEEECC
Confidence 4577777777 66664 357777777777777766666553
No 154
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.16 E-value=7.8e-06 Score=84.30 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=54.7
Q ss_pred CcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEE
Q 047635 260 GAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVV 339 (388)
Q Consensus 260 ~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV 339 (388)
++.||+||.| . ++.|. +++||++|.|+.+|.|. +++|+++|.||.++.| .++.||++|.|+++++|
T Consensus 327 ~s~i~~~~~i-~--~~~i~-~svi~~~~~I~~~~~i~---------~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i 392 (425)
T PRK00725 327 NSLVSGGCII-S--GAVVR-RSVLFSRVRVNSFSNVE---------DSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVI 392 (425)
T ss_pred eCEEcCCcEE-c--Ccccc-CCEECCCCEECCCCEEe---------eeEEcCCCEECCCCEE-eeEEECCCCEECCCCEE
Confidence 5677777777 4 56665 47788888888887775 4789999999999987 57889999999999888
Q ss_pred CCC
Q 047635 340 LKD 342 (388)
Q Consensus 340 ~~d 342 (388)
..+
T Consensus 393 ~~~ 395 (425)
T PRK00725 393 GED 395 (425)
T ss_pred CCC
Confidence 755
No 155
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.1e-05 Score=81.75 Aligned_cols=69 Identities=33% Similarity=0.506 Sum_probs=44.9
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
+.|-..+.||+++.|+. ++.||.+++||+||.|++++.|. +.+|.++|.||.++.|. +..||++|.||
T Consensus 256 ~~i~gp~~ig~~~~i~~--~~~i~~~~~ig~~~~I~~~~~i~---------~Sii~~~~~i~~~~~i~-~sIi~~~~~ig 323 (358)
T COG1208 256 AYIIGPVVIGPGAKIGP--GALIGPYTVIGEGVTIGNGVEIK---------NSIIMDNVVIGHGSYIG-DSIIGENCKIG 323 (358)
T ss_pred ceEeCCEEECCCCEECC--CCEECCCcEECCCCEECCCcEEE---------eeEEEcCCEECCCCEEe-eeEEcCCcEEC
Confidence 34555566666666655 56666666666666666666664 35777777777777764 56677777777
Q ss_pred C
Q 047635 335 A 335 (388)
Q Consensus 335 a 335 (388)
+
T Consensus 324 ~ 324 (358)
T COG1208 324 A 324 (358)
T ss_pred C
Confidence 6
No 156
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.14 E-value=7.9e-06 Score=81.71 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=45.1
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
..+.+.+.||+++.| + +++|+..+.||++|.|+ ++.|++ +++||++|.|+ ++.| .+++|+++|.|+
T Consensus 249 ~~i~~~~~i~~~~~i-~--~~~i~~~~~Ig~~~~I~-~~~i~~--------~~~Ig~~~~i~-~~~i-~~s~i~~~~~i~ 314 (353)
T TIGR01208 249 SKIRGRVVVGEGAKI-V--NSVIRGPAVIGEDCIIE-NSYIGP--------YTSIGEGVVIR-DAEV-EHSIVLDESVIE 314 (353)
T ss_pred CEEcCCEEECCCCEE-e--CCEEECCcEECCCCEEc-CcEECC--------CCEECCCCEEe-eeEE-EeeEEcCCCEEc
Confidence 455666777777777 3 45565666677777665 344543 56777777776 5555 477888888887
Q ss_pred CCC
Q 047635 335 AGS 337 (388)
Q Consensus 335 ags 337 (388)
.++
T Consensus 315 ~~~ 317 (353)
T TIGR01208 315 GVQ 317 (353)
T ss_pred CCc
Confidence 763
No 157
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.13 E-value=3.5e-06 Score=74.76 Aligned_cols=102 Identities=20% Similarity=0.362 Sum_probs=74.0
Q ss_pred eeeeEecCCcEECCceEEcC-CCCcEECCCcEECCCcEEcC----C---------CEECCCCccC-C--CCCCEECCCcE
Q 047635 252 VFSVDIHPGAKIGRGLLFDH-ATGVVVGETAVIGDNVSILH----N---------VTLGGTGKMS-G--DRHPKIGNGVL 314 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~-gtgVvIG~~~~IGdnV~Ig~----g---------vtIgg~~~i~-g--~~~~~IGd~V~ 314 (388)
...+.|++++.+.+.+.+.. ...++||+++.|++...|.+ | -.||...... + ..--++||+.+
T Consensus 24 rGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NV 103 (190)
T KOG4042|consen 24 RGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNV 103 (190)
T ss_pred ccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcce
Confidence 34566677777766665544 33689999998888887754 1 2344322111 1 11248999999
Q ss_pred EccCCEECCCcEECCCCEECCCCEEC--CCCCCCcEEEecC
Q 047635 315 VGAGTCILGNIKIGDGAKIGAGSVVL--KDVPPRTTAVGNP 353 (388)
Q Consensus 315 IGaga~Ilg~V~IGd~v~IGagsVV~--~dVp~~s~VvG~P 353 (388)
|+..|.++.||.+-+||.|||++.|. +.+|+++++.|.-
T Consensus 104 ieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~ 144 (190)
T KOG4042|consen 104 IESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGAT 144 (190)
T ss_pred EeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccc
Confidence 99999999999999999999999997 4589999999853
No 158
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.09 E-value=8.7e-06 Score=82.11 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=14.4
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEE
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVV 339 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV 339 (388)
++||++|.||++|.|. +++|+++|.||.++.|
T Consensus 309 s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i 340 (380)
T PRK05293 309 SVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVI 340 (380)
T ss_pred eEEcCCCEECCCCEEE-CCEEeCCCEECCCeEE
Confidence 4455555555544432 3344444444444433
No 159
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.09 E-value=1.8e-06 Score=58.12 Aligned_cols=35 Identities=37% Similarity=0.659 Sum_probs=29.3
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEEC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVL 340 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~ 340 (388)
+++||++|+|++++.|.++++||++|.|+++++|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 36889999999999999999999999999988875
No 160
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=9.9e-06 Score=81.97 Aligned_cols=82 Identities=39% Similarity=0.575 Sum_probs=60.0
Q ss_pred cceeeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcE-----EcCCCEECCCCccCCCCCCEECCCcEEccCCEECC
Q 047635 249 VSEVFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVS-----ILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 249 ~~~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~-----Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg 323 (388)
......+.||+++.||.++.|.. +++||++|.||+++. |+.+|.|+....+. +.+||++|.||++. .
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~--~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~---~sIi~~~~~ig~~~-~-- 327 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGP--YTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIG---DSIIGENCKIGASL-I-- 327 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECC--CcEECCCCEECCCcEEEeeEEEcCCEECCCCEEe---eeEEcCCcEECCce-e--
Confidence 44567788999999999999987 889999998888865 45666666655554 46889999988832 2
Q ss_pred CcEECCCCEECCCCEECCC
Q 047635 324 NIKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~d 342 (388)
||+ +.+|.++.+.++
T Consensus 328 ---i~d-~~~g~~~~i~~g 342 (358)
T COG1208 328 ---IGD-VVIGINSEILPG 342 (358)
T ss_pred ---ecc-eEecCceEEcCc
Confidence 566 666666555554
No 161
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.08 E-value=9.4e-06 Score=83.92 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=28.1
Q ss_pred cEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCc
Q 047635 261 AKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGK 300 (388)
Q Consensus 261 a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~ 300 (388)
+.|+++|.|. +++|+ +++||++|.|+.+|.|.....
T Consensus 316 s~I~~~~~I~---~~~I~-~svI~~~~~Ig~~~~I~~sii 351 (436)
T PLN02241 316 SIISHGCFLR---ECKIE-HSVVGLRSRIGEGVEIEDTVM 351 (436)
T ss_pred eEEcCCcEEc---CeEEE-eeEEcCCCEECCCCEEEEeEE
Confidence 6778888775 56775 579999999999999986433
No 162
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=8.7e-06 Score=81.97 Aligned_cols=68 Identities=32% Similarity=0.461 Sum_probs=37.5
Q ss_pred eEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEEC
Q 047635 255 VDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIG 334 (388)
Q Consensus 255 V~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IG 334 (388)
..++++++||+++.|.. ++||+||.||..|+|.+ ..|-+||.||.|+.| +|+.||.|+.||
T Consensus 335 ~iv~~~t~i~~~s~ik~---------SviG~nC~Ig~~~~v~n---------Silm~nV~vg~G~~I-ensIIg~gA~Ig 395 (433)
T KOG1462|consen 335 SIVGDNTQIGENSNIKR---------SVIGSNCDIGERVKVAN---------SILMDNVVVGDGVNI-ENSIIGMGAQIG 395 (433)
T ss_pred hccCCCceecccceeee---------eeecCCccccCCcEEEe---------eEeecCcEecCCcce-ecceecccceec
Confidence 44566666665555542 44555555555555532 455566666666654 356666666666
Q ss_pred CCCEECC
Q 047635 335 AGSVVLK 341 (388)
Q Consensus 335 agsVV~~ 341 (388)
+||.+..
T Consensus 396 ~gs~L~n 402 (433)
T KOG1462|consen 396 SGSKLKN 402 (433)
T ss_pred CCCeeee
Confidence 6665543
No 163
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.98 E-value=4.2e-05 Score=63.77 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=32.0
Q ss_pred ecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 257 IHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 257 Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
||+++.|+ ++.|. ..+|++++.||+++.|. ++.|+. ++.||+++.| .++.|..++.||+++.|+..
T Consensus 15 Ig~~~~I~-~~~I~---~svi~~~~~Ig~~~~I~-~siI~~--------~~~Ig~~~~i-~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 15 VSEGCIIS-GGTVE---NSVLFRGVRVGSGSVVE-DSVIMP--------NVGIGRNAVI-RRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ECCCCEEc-CeEEE---eCEEeCCCEECCCCEEE-EeEEcC--------CCEECCCCEE-EeEEECCCCEECCCCEECCC
Confidence 44444444 44443 24455555555555553 334433 3455555555 34555555555555555554
No 164
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=2.1e-05 Score=80.32 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=51.4
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEEC-----CCCccCC---CCCCEECCCcEEccCCEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLG-----GTGKMSG---DRHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIg-----g~~~i~g---~~~~~IGd~V~IGaga~Ilg 323 (388)
...++|...++||.++.|+. +++|...++||++|.||++|.|- ++..+.. -...+||++|.||+-+.+.+
T Consensus 260 P~t~~i~~dv~ig~DvvI~p--~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRP 337 (460)
T COG1207 260 PATTYIRGDVEIGRDVVIEP--NVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRP 337 (460)
T ss_pred CCeEEEcCcEEECCceEEec--CcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCC
Confidence 44566777777777777776 56666666666666666664442 2222111 01346666666666666666
Q ss_pred CcEECCCCEECCCCEECC
Q 047635 324 NIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~ 341 (388)
+..+|+++.||.-+-+.+
T Consensus 338 g~~L~~~~hIGNFVEvK~ 355 (460)
T COG1207 338 GAVLGADVHIGNFVEVKK 355 (460)
T ss_pred cCcccCCCeEeeeEEEec
Confidence 666666666666655554
No 165
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.90 E-value=2.9e-05 Score=80.20 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=16.9
Q ss_pred cEECCceEEcCCCCcEECCCcEECCCcEEcCCCEEC
Q 047635 261 AKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLG 296 (388)
Q Consensus 261 a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIg 296 (388)
+.||++|.| . ++.|+ +++||++|.|+.+|.|-
T Consensus 309 ~~ig~~~~i-~--~~~i~-~svi~~~~~Ig~~~~i~ 340 (429)
T PRK02862 309 SIIAEGCII-K--NCSIH-HSVLGIRSRIESGCTIE 340 (429)
T ss_pred CEECCCCEE-C--CcEEE-EEEEeCCcEECCCCEEE
Confidence 455666655 3 44443 25555555555555553
No 166
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2.8e-05 Score=78.41 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHhhhcH
Q 047635 173 SGTLFELFMGVIVEDQ 188 (388)
Q Consensus 173 ~~~l~~~~~~~l~~~p 188 (388)
++.+..++...++..|
T Consensus 237 ~~f~P~lvkkQ~q~~~ 252 (433)
T KOG1462|consen 237 ADFLPYLVKKQFQKNP 252 (433)
T ss_pred ccccchhhhhhhhcCC
Confidence 3344445554444443
No 167
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0001 Score=72.39 Aligned_cols=60 Identities=30% Similarity=0.291 Sum_probs=31.0
Q ss_pred cEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCE
Q 047635 275 VVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSV 338 (388)
Q Consensus 275 VvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsV 338 (388)
+.+..++.||+||+||.+++||.+..+. .++|=++|.|..|++|+ +..||-++.||-=+-
T Consensus 295 akvhptAkiGPNVSIga~vrvg~GvRl~---~sIIl~d~ei~enavVl-~sIigw~s~iGrWaR 354 (407)
T KOG1460|consen 295 AKVHPTAKIGPNVSIGANVRVGPGVRLR---ESIILDDAEIEENAVVL-HSIIGWKSSIGRWAR 354 (407)
T ss_pred ceeCCccccCCCceecCCceecCCceee---eeeeccCcEeeccceEE-eeeecccccccceee
Confidence 3333334444444444444443332222 35777777777777776 455666666664333
No 168
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.80 E-value=5.5e-05 Score=78.17 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=44.2
Q ss_pred eeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccC----------CCCCCEECCCcEEccCCEECC
Q 047635 254 SVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMS----------GDRHPKIGNGVLVGAGTCILG 323 (388)
Q Consensus 254 gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~----------g~~~~~IGd~V~IGaga~Ilg 323 (388)
++.||+++.| +++.|. +.+||.+|.||++|.|-..+..++....+ +..++.||++|.| .+++|..
T Consensus 308 ~~~ig~~~~i-~~~~i~---~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~ 382 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH---HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTI-KRAIIDK 382 (429)
T ss_pred eCEECCCCEE-CCcEEE---EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEE-EEEEECC
Confidence 3567888877 677775 35777778888877775555544211000 1113455555555 3455555
Q ss_pred CcEECCCCEECCC
Q 047635 324 NIKIGDGAKIGAG 336 (388)
Q Consensus 324 ~V~IGd~v~IGag 336 (388)
++.||++|.|..+
T Consensus 383 ~~~i~~~~~~~~~ 395 (429)
T PRK02862 383 NARIGNNVRIVNK 395 (429)
T ss_pred CcEECCCcEEecC
Confidence 5555555555433
No 169
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.80 E-value=3.3e-05 Score=76.60 Aligned_cols=87 Identities=23% Similarity=0.212 Sum_probs=55.7
Q ss_pred eeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCC--CCCCEECCCcEEccCCEECCCcEECC
Q 047635 252 VFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSG--DRHPKIGNGVLVGAGTCILGNIKIGD 329 (388)
Q Consensus 252 ~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g--~~~~~IGd~V~IGaga~Ilg~V~IGd 329 (388)
...+.+.+.+.||++|.|++ +++||.+++|+++|.|-+.+.+++.-.... -+...+|-++.||.++.|-++++||+
T Consensus 262 ~~nvlvd~~~~iG~~C~Ig~--~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~ 339 (371)
T KOG1322|consen 262 VGNVLVDSIASIGENCSIGP--NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGK 339 (371)
T ss_pred cccEeeccccccCCccEECC--CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEecc
Confidence 34566778888888888877 788888888888877766555554221111 12345666667777776666666666
Q ss_pred CCEECCCCEEC
Q 047635 330 GAKIGAGSVVL 340 (388)
Q Consensus 330 ~v~IGagsVV~ 340 (388)
+++|...-.|.
T Consensus 340 nV~V~d~~~vn 350 (371)
T KOG1322|consen 340 NVIVADEDYVN 350 (371)
T ss_pred ceEEecccccc
Confidence 66665554443
No 170
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.80 E-value=6.4e-05 Score=77.58 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=16.3
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEEC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVL 340 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~ 340 (388)
++||++|.||.+|.| .+++|+++|.||.++.|.
T Consensus 344 svi~~~~~I~~~~~i-~~svi~~~~~I~~~~~i~ 376 (425)
T PRK00725 344 SVLFSRVRVNSFSNV-EDSVLLPDVNVGRSCRLR 376 (425)
T ss_pred CEECCCCEECCCCEE-eeeEEcCCCEECCCCEEe
Confidence 455555555555554 244444444444444443
No 171
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=97.78 E-value=6.3e-05 Score=77.08 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=44.9
Q ss_pred ECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEE
Q 047635 277 VGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARL 356 (388)
Q Consensus 277 IG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArv 356 (388)
+..++.||++|.|+ +++|. +++||++|.||.||.|. ++.|+++|.||++++|...|-.....+|..+++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~---------~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVR---------NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeE---------cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence 34446666666665 66664 36778888888888775 566777888887777766543333344555544
Q ss_pred ec
Q 047635 357 IG 358 (388)
Q Consensus 357 i~ 358 (388)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 43
No 172
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=97.68 E-value=0.00015 Score=72.49 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCEECCCcEEccCCEECCCcEECCCCEECCCCEECC
Q 047635 306 HPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~ 341 (388)
+++||++|.||.+|+|. ++.|++++.||.++.|..
T Consensus 310 ~s~i~~~~~I~~~~~i~-~sii~~~~~v~~~~~l~~ 344 (361)
T TIGR02091 310 HSVLGIRVRIGSGSTVE-DSVIMGDVGIGRGAVIRN 344 (361)
T ss_pred ccEECCCCEECCCCEEe-eeEEeCCCEECCCCEEee
Confidence 35677777777777664 566666777766666643
No 173
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=97.61 E-value=0.00013 Score=73.48 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=48.7
Q ss_pred CcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCCCcEEEecC
Q 047635 274 GVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNP 353 (388)
Q Consensus 274 gVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~P 353 (388)
.+.||+++.| .++.|+.||+|++ .+ .+++||++|.||.||.| .++.|+++|.|++++.+...|-....++|.-
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~~--~v---~~s~i~~~~~I~~~~~i-~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~ 350 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIEG--KV---ENSILSRGVHVGKDALI-KNCIIMQRTVIGEGAHLENVIIDKDVVIEPN 350 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEee--EE---eCCEECCCCEECCCCEE-EeeEEeCCCEECCCCEEEEEEECCCCEECCC
Confidence 4555555555 4556666666642 12 24689999999999987 4677888888888877766543333344544
Q ss_pred cEEe
Q 047635 354 ARLI 357 (388)
Q Consensus 354 Arvi 357 (388)
+++.
T Consensus 351 ~~~~ 354 (369)
T TIGR02092 351 VKIA 354 (369)
T ss_pred CEeC
Confidence 4443
No 174
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.58 E-value=4.2e-05 Score=51.31 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=6.8
Q ss_pred CEECCCcEEccCCEE
Q 047635 307 PKIGNGVLVGAGTCI 321 (388)
Q Consensus 307 ~~IGd~V~IGaga~I 321 (388)
++||+++.|+++++|
T Consensus 20 ~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 20 VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEE-TTEEEETTEEE
T ss_pred CEECCCCEEcCCCEE
Confidence 444455555555444
No 175
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.57 E-value=0.00015 Score=64.12 Aligned_cols=77 Identities=25% Similarity=0.388 Sum_probs=43.3
Q ss_pred cEECCCcEEcCCCEECCCCccCCC----CCCEECCCcEEccCCEE-----CCCcEECCCCEECCCC------EECCC--C
Q 047635 281 AVIGDNVSILHNVTLGGTGKMSGD----RHPKIGNGVLVGAGTCI-----LGNIKIGDGAKIGAGS------VVLKD--V 343 (388)
Q Consensus 281 ~~IGdnV~Ig~gvtIgg~~~i~g~----~~~~IGd~V~IGaga~I-----lg~V~IGd~v~IGags------VV~~d--V 343 (388)
+.||..|.++.++.|...-++-.. ....|||+|+|+.+|+| ..-|.+|.+++||-++ .|..| +
T Consensus 55 Vr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVl 134 (184)
T KOG3121|consen 55 VRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVL 134 (184)
T ss_pred ceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCceEhhhheeccCCccc
Confidence 456666666666666543332221 24689999999988876 2234455555555544 44444 3
Q ss_pred CCCcEEEecCcEEecc
Q 047635 344 PPRTTAVGNPARLIGG 359 (388)
Q Consensus 344 p~~s~VvG~PArvi~~ 359 (388)
|+.+++ .|-..++.
T Consensus 135 Ppet~v--ppy~~~~g 148 (184)
T KOG3121|consen 135 PPETLV--PPYSTIGG 148 (184)
T ss_pred Cccccc--CCceEEcC
Confidence 666554 34555543
No 176
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.52 E-value=9.3e-05 Score=73.44 Aligned_cols=85 Identities=26% Similarity=0.305 Sum_probs=54.1
Q ss_pred EecCCcEECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCC---CCCEECCCcEEccCCEECCCcEECCCCE
Q 047635 256 DIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGD---RHPKIGNGVLVGAGTCILGNIKIGDGAK 332 (388)
Q Consensus 256 ~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~---~~~~IGd~V~IGaga~Ilg~V~IGd~v~ 332 (388)
..-+++.|-.++.++. -+.+|++|.||.|+.||.+|+|+++..+... +...++++++| +.+.+.++++||.+++
T Consensus 254 r~~p~~~i~~nvlvd~--~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~~~~IG~~~~ 330 (371)
T KOG1322|consen 254 RLLPGSKIVGNVLVDS--IASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEI-SSSIVGWNVPIGIWAR 330 (371)
T ss_pred cccCCccccccEeecc--ccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHH-HhhhccccccccCceE
Confidence 3455678888888877 6777778888888877777777764433321 12244444443 2234466777777777
Q ss_pred ECCCCEECCCC
Q 047635 333 IGAGSVVLKDV 343 (388)
Q Consensus 333 IGagsVV~~dV 343 (388)
|..++++.+||
T Consensus 331 id~~a~lG~nV 341 (371)
T KOG1322|consen 331 IDKNAVLGKNV 341 (371)
T ss_pred EecccEeccce
Confidence 77777777664
No 177
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.44 E-value=0.00016 Score=48.66 Aligned_cols=31 Identities=52% Similarity=0.799 Sum_probs=15.8
Q ss_pred EECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEEC
Q 047635 282 VIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCIL 322 (388)
Q Consensus 282 ~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Il 322 (388)
.||+||.|+.+++|| +.|||+|.|++|++|.
T Consensus 3 ~IG~~~~ig~~~~ig----------i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 3 TIGDNCFIGANSTIG----------ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EE-TTEEE-TT-EET----------SEE-TTEEE-TTEEEE
T ss_pred EECCCEEECcccccC----------CEEcCCCEECCCCEEc
Confidence 455555555555552 4677777777777663
No 178
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00049 Score=67.69 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=52.7
Q ss_pred eeeeeEecCCcEECCceEEcCCCCcEECCCcEECCCcEE-----cCCCEECCCCccCCCCCCEECCCcEEccCCEECCC-
Q 047635 251 EVFSVDIHPGAKIGRGLLFDHATGVVVGETAVIGDNVSI-----LHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGN- 324 (388)
Q Consensus 251 ~~~gV~Ig~~a~IG~gv~I~~gtgVvIG~~~~IGdnV~I-----g~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~- 324 (388)
....|.|||+|++.+.+.|+. +|.||.+++||++|.| .++|.|..+..+. |++||-++.||.=+.|.+.
T Consensus 285 IigdVyIhPsakvhptAkiGP--NVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---~sIigw~s~iGrWaRVe~~p 359 (407)
T KOG1460|consen 285 IIGDVYIHPSAKVHPTAKIGP--NVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---HSIIGWKSSIGRWARVEGIP 359 (407)
T ss_pred EEeeeEEcCcceeCCccccCC--CceecCCceecCCceeeeeeeccCcEeeccceEE---eeeecccccccceeeecccc
Confidence 345677777777777777766 7777777777776654 4455554443332 4567777777655554321
Q ss_pred ------------cEECCCCEECCCCEECCC
Q 047635 325 ------------IKIGDGAKIGAGSVVLKD 342 (388)
Q Consensus 325 ------------V~IGd~v~IGagsVV~~d 342 (388)
++.|+.|.++..++|...
T Consensus 360 v~~s~~~~~~a~Tilga~v~v~dev~v~~s 389 (407)
T KOG1460|consen 360 VEPSPNLPFAALTILGADVSVEDEVIVLNS 389 (407)
T ss_pred cccCCCCCcceeEEecccceecceeEEeee
Confidence 345566666666666554
No 179
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0025 Score=64.96 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=37.1
Q ss_pred EECCceEEcCCCCcEECCCcEECCCcEEcCCCEECCCCccCCCCCCEECCCcEEccCCEECCCcEECCCCEECCCCEECC
Q 047635 262 KIGRGLLFDHATGVVVGETAVIGDNVSILHNVTLGGTGKMSGDRHPKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK 341 (388)
Q Consensus 262 ~IG~gv~I~~gtgVvIG~~~~IGdnV~Ig~gvtIgg~~~i~g~~~~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~ 341 (388)
-|+.||+|. | .| .+++|+.+|.|+.+++|.+ ++|=.+|.||.||+|. ++.|.++|.|+.|.+|..
T Consensus 298 Lv~~GciI~---G-~V-~nSVL~~~v~I~~gs~i~~---------svim~~~~IG~~~~l~-~aIIDk~v~I~~g~~i~~ 362 (393)
T COG0448 298 LVAGGCIIS---G-TV-ENSVLFRGVRIGKGSVIEN---------SVIMPDVEIGEGAVLR-RAIIDKNVVIGEGVVIGG 362 (393)
T ss_pred eeeCCeEEE---e-EE-EeeEEecCeEECCCCEEEe---------eEEeCCcEECCCCEEE-EEEeCCCcEeCCCcEEcC
Confidence 355555554 2 22 2356666666666666643 4566666666666643 556666666666655554
Q ss_pred C
Q 047635 342 D 342 (388)
Q Consensus 342 d 342 (388)
+
T Consensus 363 ~ 363 (393)
T COG0448 363 D 363 (393)
T ss_pred C
Confidence 4
No 180
>PF06426 SATase_N: Serine acetyltransferase, N-terminal ; InterPro: IPR010493 The N-terminal domain of serine acetyltransferase has a sequence that is conserved in plants [] and bacteria [].; GO: 0009001 serine O-acetyltransferase activity, 0006535 cysteine biosynthetic process from serine, 0005737 cytoplasm; PDB: 1T3D_C 3MC4_B 3P47_A 3P1B_A 3Q1X_A 1SSM_A 1S80_C 1SSQ_D 1SST_A 3GVD_L ....
Probab=96.40 E-value=0.00042 Score=58.42 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=43.4
Q ss_pred cccccccccccCCCCchHHHHHHHHHHHHhhhcCCcccchhhhhccCCCCHHHHHH
Q 047635 104 QAIHTRSNIDDGDDADVDLWLKMQDEARSDVEEEPVLSSYYFASILSHKSLESALA 159 (388)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~w~~i~~e~~~~~~~eP~l~~~~~~~il~~~~~~~~la 159 (388)
+....++.+.++....+.|++.++.|+++..++||++.++++ ++|.++||++..+
T Consensus 51 ~~~~l~~~~~~~~~~~p~i~~~~~~Dl~Av~~RDPA~~~~~~-~lL~~kGF~AlQa 105 (105)
T PF06426_consen 51 SADQLRDLFRDALEADPEIVEAARADLQAVYERDPACPSYLE-PLLFFKGFHALQA 105 (105)
T ss_dssp -HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSTT--STHH-HHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCccccchhH-HHHHCccHHHhcC
Confidence 333455667777788889999999999999999999999987 8999999998764
No 181
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.011 Score=60.32 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=11.3
Q ss_pred eccchhHH----HHHHHHHHHHHHh
Q 047635 216 LNFKGFLA----CQAHRIAHRLWLQ 236 (388)
Q Consensus 216 l~~~gf~a----l~~~Ria~~l~~~ 236 (388)
+-|.|||. +..|--++.....
T Consensus 238 Y~f~gYw~dVgTi~syy~aNmdLl~ 262 (393)
T COG0448 238 YEFSGYWRDVGTIDSYYEANMDLLS 262 (393)
T ss_pred EeccchhhhcccHHHHHHhhHHhcC
Confidence 34566764 4555555555544
No 182
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.20 E-value=0.013 Score=55.88 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=6.7
Q ss_pred ecCCcEECCceEEc
Q 047635 257 IHPGAKIGRGLLFD 270 (388)
Q Consensus 257 Ig~~a~IG~gv~I~ 270 (388)
....+.||++..+.
T Consensus 19 v~gdViIG~nS~l~ 32 (277)
T COG4801 19 VKGDVIIGKNSMLK 32 (277)
T ss_pred EeccEEEcccceee
Confidence 33444555555554
No 183
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=95.93 E-value=0.011 Score=56.42 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=14.7
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAG 336 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGag 336 (388)
..||+++.|+...++.++-.||+++.|..|
T Consensus 75 ayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 75 AYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred eEEeccceeeeeEEEecccccccceEEecC
Confidence 444444444444444555555555555433
No 184
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=92.71 E-value=0.084 Score=47.38 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=18.2
Q ss_pred EECCCcEEccCCEE---CCCcEECCCCEECCCCEECCCCCCCcEE
Q 047635 308 KIGNGVLVGAGTCI---LGNIKIGDGAKIGAGSVVLKDVPPRTTA 349 (388)
Q Consensus 308 ~IGd~V~IGaga~I---lg~V~IGd~v~IGagsVV~~dVp~~s~V 349 (388)
+|+++|+|-+-+++ .|++.||+|++|..-++|..-.|+|.++
T Consensus 28 ti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~ 72 (190)
T KOG4042|consen 28 TIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVW 72 (190)
T ss_pred EecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCcc
Confidence 33444444443333 2344444444444444444444444433
No 185
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=63.45 E-value=10 Score=39.47 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=5.3
Q ss_pred ceeeccc
Q 047635 55 VMATCID 61 (388)
Q Consensus 55 ~~~~~~~ 61 (388)
.|-+|.|
T Consensus 56 v~V~s~D 62 (414)
T PF07959_consen 56 VLVCSGD 62 (414)
T ss_pred eEEEecc
Confidence 4778888
No 186
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=59.41 E-value=5.3 Score=32.16 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=18.9
Q ss_pred CCCCCcEEEecCcEEeccCCCCccccCCC
Q 047635 342 DVPPRTTAVGNPARLIGGKENPFMLDKIP 370 (388)
Q Consensus 342 dVp~~s~VvG~PArvi~~~~~~~~~~~~p 370 (388)
||||.+++.|+||++.+-...+-...+.+
T Consensus 1 DVpPf~~~~G~~a~~~GlN~vGLrR~Gfs 29 (83)
T PF13720_consen 1 DVPPFMLVAGNPARIRGLNLVGLRRRGFS 29 (83)
T ss_dssp BB-TTEEEETTTTEEEEE-HHHHHHTTS-
T ss_pred CCCCeEEecCCccEEeeeeHHHHHHcCCC
Confidence 79999999999999977544333333443
No 187
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=56.40 E-value=6.6 Score=32.13 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred ECCCcEECCCCEECCCCEECCCCCCCcEEEecCcEEec
Q 047635 321 ILGNIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIG 358 (388)
Q Consensus 321 Ilg~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~ 358 (388)
+.+++...+...|...+.|..+|-.+.+.+-.-|++-+
T Consensus 60 v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 60 VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASING 97 (101)
T ss_pred EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEEE
Confidence 55555555556666666666665555555444444443
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=47.47 E-value=19 Score=41.56 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=24.1
Q ss_pred EECCCcEEccCCEECCCcEECCCCEECCCCEECC--------CCCCCcEEEecC
Q 047635 308 KIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLK--------DVPPRTTAVGNP 353 (388)
Q Consensus 308 ~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~--------dVp~~s~VvG~P 353 (388)
+|..++.+|.++.+.+++.||.++.||.+++|+. .||+++.+-+.|
T Consensus 338 ~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vp 391 (974)
T PRK13412 338 VLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVP 391 (974)
T ss_pred EecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEE
Confidence 4444444444444344444444444444444431 367777777777
No 189
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=47.44 E-value=16 Score=38.07 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=9.1
Q ss_pred CCEECCCcEEccCCEEC
Q 047635 306 HPKIGNGVLVGAGTCIL 322 (388)
Q Consensus 306 ~~~IGd~V~IGaga~Il 322 (388)
++.|+.++.||.||+|.
T Consensus 301 ~s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 301 HSHLGGPWSIGSNCIIS 317 (414)
T ss_pred eeecCCCCEECCCCEEE
Confidence 34555555555555543
No 190
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=29.97 E-value=97 Score=27.66 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.5
Q ss_pred CcEECCCCEECCCCEECCCCCCCcEEEecCcEEeccC
Q 047635 324 NIKIGDGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 360 (388)
Q Consensus 324 ~V~IGd~v~IGagsVV~~dVp~~s~VvG~PArvi~~~ 360 (388)
|+..-+.+.|.+++.|..||-...+.+-..|++.++.
T Consensus 84 ni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~G~~ 120 (146)
T COG1664 84 NILAAERVELYPGGRVIGDITTKEITVEEGAIFEGDC 120 (146)
T ss_pred EEEEeeEEEEcCCcEEeeeecccEEEEccCCEEEeEE
Confidence 4666677778888888888877777777777776653
No 191
>PRK15313 autotransport protein MisL; Provisional
Probab=23.04 E-value=2.8e+02 Score=32.10 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=3.8
Q ss_pred cEECCCCEE
Q 047635 325 IKIGDGAKI 333 (388)
Q Consensus 325 V~IGd~v~I 333 (388)
|++|+++.|
T Consensus 272 ~~lg~~~~i 280 (955)
T PRK15313 272 TELGNNATI 280 (955)
T ss_pred EEecCCceE
Confidence 344444433
No 192
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=22.22 E-value=39 Score=27.50 Aligned_cols=51 Identities=27% Similarity=0.308 Sum_probs=32.1
Q ss_pred CEECCCcEEccCCEECCCcEECCCCEECCCCEECCCCCC-CcEEEecCcEEeccC
Q 047635 307 PKIGNGVLVGAGTCILGNIKIGDGAKIGAGSVVLKDVPP-RTTAVGNPARLIGGK 360 (388)
Q Consensus 307 ~~IGd~V~IGaga~Ilg~V~IGd~v~IGagsVV~~dVp~-~s~VvG~PArvi~~~ 360 (388)
+.....+.|+.++.|.+++... .+.|. |. |..++.. +.+....-+++.+..
T Consensus 31 i~~~g~v~i~~~~~v~G~i~~~-~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G~i 82 (101)
T PF04519_consen 31 IKAEGKVKIGGNGEVKGDIKAD-DVIIS-GS-VDGNVEASGKVEIYGTARVEGDI 82 (101)
T ss_pred EEEceEEEEcCCCEEEEEEEEe-EEEEc-CE-EeEEEEECceEEEeCCEEEEEEE
Confidence 4554467888888888776654 55553 44 6666655 555566667776653
Done!