Query 047636
Match_columns 238
No_of_seqs 124 out of 695
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1607 Protein transporter of 100.0 7.8E-52 1.7E-56 369.3 18.5 201 20-238 45-245 (318)
2 COG5058 LAG1 Protein transport 100.0 1.8E-47 4E-52 337.6 15.4 199 19-237 112-313 (395)
3 KOG1608 Protein transporter of 100.0 5.7E-33 1.2E-37 243.3 13.0 195 17-231 73-267 (374)
4 smart00724 TLC TRAM, LAG1 and 100.0 4.3E-31 9.4E-36 223.7 10.7 155 74-236 1-158 (205)
5 PF03798 TRAM_LAG1_CLN8: TLC d 99.9 6.5E-25 1.4E-29 183.2 9.2 151 75-236 1-158 (198)
6 PF08390 TRAM1: TRAM1-like pro 98.3 1.6E-06 3.6E-11 61.2 6.2 42 17-58 22-63 (65)
7 KOG4474 Uncharacterized conser 96.0 0.024 5.2E-07 50.0 6.9 140 73-227 43-187 (253)
8 KOG4561 Uncharacterized conser 59.3 5.4 0.00012 36.0 1.5 76 155-231 138-216 (281)
9 PRK13454 F0F1 ATP synthase sub 33.9 2E+02 0.0044 23.8 7.1 27 27-53 34-60 (181)
10 PRK08476 F0F1 ATP synthase sub 21.2 3.5E+02 0.0075 21.4 6.1 27 27-53 10-36 (141)
No 1
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-52 Score=369.27 Aligned_cols=201 Identities=44% Similarity=0.804 Sum_probs=186.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhhhhhHHHHHHhhHHHHHHHHhhhhhheeeee
Q 047636 20 EAKDFVALPFFAAFFAAVRLFLDRFLFETLARRTIFGKGHARNDFVTKIKRKKINKFKESAWKCVYFLSAELLALVVSRY 99 (238)
Q Consensus 20 ~~~Dl~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~~y~~~~~~g~~v~~~ 99 (238)
++.|..+..+++...+..|....-.+..|...+.+..+ + .+.+||+||+|+++||++++++|++++++
T Consensus 45 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~----------~--~~~~k~~Es~Wk~~yy~~s~~~glyV~~~ 112 (318)
T KOG1607|consen 45 GASDICFLRFYLLFFTFTRLFLMLLVGRPFPLRLNVTA----------D--RRKKKFCESAWKFLYYLVSWIFGLYVMYH 112 (318)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCcC----------c--hhhhhhHHHHHHHHHHHHHHHHhhhheec
Confidence 45799999999999999988888777888777754322 1 22289999999999999999999999999
Q ss_pred CCCCCChhhhccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCCee
Q 047636 100 EPWFTNTKYFWVGPGDQIWPDQKTKLKLKGLYMYAAGFYTYSILALLFWETRRSDFVVSMTHHIATVILLALSYIFRFTR 179 (238)
Q Consensus 100 ~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afyl~~~~~~~~~e~~RkDf~~m~~HH~~Ti~Li~~SY~~nf~R 179 (238)
+||+.|++++|.+ ||+++++.++|+||++|.|||.++++.+ +.|++||||+||++||++|+.||.+||..||+|
T Consensus 113 ~~wf~~~k~~w~~-----yP~~~~~~~~k~~Y~~e~gfY~~~l~al-~~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R 186 (318)
T KOG1607|consen 113 EPWFYDTKSFWEG-----YPDQTLPPSFKAYYLLEAGFYIQLLFAL-FLDEKRKDFWEMVVHHVVTLILISLSYVFNFTR 186 (318)
T ss_pred chhhcCHHHHHhc-----CCCCCCCHHHHHHHHHhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999 9999999999999999999999999974 689999999999999999999999999999999
Q ss_pred eeeeeeeeccchhhHHHHHHHhhhcCCccchhhhhhHHHHHHHHHHHHHhhhhheeccC
Q 047636 180 VAPVVLALHDATDVFLEVAKMSKYGGFERTSSIFFTTFVFCWTVLRIICYPLWILRSTR 238 (238)
Q Consensus 180 vG~lVl~lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~~il~s~~ 238 (238)
+|.+|+++||+||++||++|++||.+.+.+|+..|++|+.+|+++||+.+|+|+++||.
T Consensus 187 ~G~lil~lhD~SD~~Le~~K~~nY~~~~~~~~~~F~~F~~~wi~~RL~~~p~wil~st~ 245 (318)
T KOG1607|consen 187 VGTLILALHDASDVFLELGKMLNYLQFEAIADFVFVLFAFSWIYTRLIYYPFWILRSTS 245 (318)
T ss_pred ccceeeeeecchHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999973
No 2
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-47 Score=337.65 Aligned_cols=199 Identities=31% Similarity=0.504 Sum_probs=185.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhhhhhHHHHHHhhHHHHHHHHhhhhhheeee
Q 047636 19 PEAKDFVALPFFAAFFAAVRLFLDRFLFETLARRTIFGKGHARNDFVTKIKRKKINKFKESAWKCVYFLSAELLALVVSR 98 (238)
Q Consensus 19 p~~~Dl~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~~y~~~~~~g~~v~~ 98 (238)
.|+.|++++++++++++.+|.+++..|++|++..++++. ++|++||+||+|+++||++++.+|+|+++
T Consensus 112 KG~~d~~F~lfy~ifftf~ref~md~virpf~l~~~v~s------------~kkikRf~eq~y~~fyy~v~g~~Glyvmr 179 (395)
T COG5058 112 KGILDLCFVLFYMIFFTFLREFLMDVVIRPFGLELNVRS------------EKKIKRFCEQMYAIFYYGVSGPFGLYVMR 179 (395)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC------------HHHHHHHHHHHHHHHHhhccccceEEEEe
Confidence 467899999999999999999999999999999977653 58889999999999999999999999999
Q ss_pred eCC-CCCChhhhccCCCCCCCCCccccchhHHHHHHHHHHHHHH--HHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhc
Q 047636 99 YEP-WFTNTKYFWVGPGDQIWPDQKTKLKLKGLYMYAAGFYTYS--ILALLFWETRRSDFVVSMTHHIATVILLALSYIF 175 (238)
Q Consensus 99 ~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afyl~~--~~~~~~~e~~RkDf~~m~~HH~~Ti~Li~~SY~~ 175 (238)
++| |+.|++.+|.+ ||+...|...|.||+.|+|||.++ ++. +..|++||||+||+.||++|++||..||.+
T Consensus 180 ss~~w~fntk~l~et-----yp~~~~p~lfk~fYliqaafw~qQa~ilv-LqlEkprkD~~elv~HHIVTllLI~lSY~f 253 (395)
T COG5058 180 SSPLWFFNTKALYET-----YPVFYNPFLFKAFYLIQAAFWAQQACILV-LQLEKPRKDFKELVFHHIVTLLLIWLSYVF 253 (395)
T ss_pred cCcchhhhhHHHHHh-----CccccCcHHHHHHHHHHHHHHHHHHhhhe-eeecchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999 66799999998 999999999999999999999998 443 458999999999999999999999999999
Q ss_pred CCeeeeeeeeeeccchhhHHHHHHHhhhcCCccchhhhhhHHHHHHHHHHHHHhhhhheecc
Q 047636 176 RFTRVAPVVLALHDATDVFLEVAKMSKYGGFERTSSIFFTTFVFCWTVLRIICYPLWILRST 237 (238)
Q Consensus 176 nf~RvG~lVl~lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~~il~s~ 237 (238)
||+|+|+.|...||+||++|+.+|++||.+. .+|+..|++|+.+|+++|+++. +.|+|+.
T Consensus 254 hftr~GlAI~itmDvSD~~Ls~sK~lnYl~~-~l~~~iF~iFv~~wIysRHyln-~kIlw~v 313 (395)
T COG5058 254 HFTRMGLAIYITMDVSDFFLSLSKTLNYLNS-VLATFIFGIFVFIWIYSRHYLN-LKILWSV 313 (395)
T ss_pred HHHhccceEEEEEeccHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999977 8899999999999999999854 5677664
No 3
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-33 Score=243.33 Aligned_cols=195 Identities=16% Similarity=0.371 Sum_probs=186.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhhhhhHHHHHHhhHHHHHHHHhhhhhhee
Q 047636 17 SFPEAKDFVALPFFAAFFAAVRLFLDRFLFETLARRTIFGKGHARNDFVTKIKRKKINKFKESAWKCVYFLSAELLALVV 96 (238)
Q Consensus 17 ~~p~~~Dl~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~k~~~~~~~~~~~r~~~~~Kf~Es~w~~~~y~~~~~~g~~v 96 (238)
.+-|++|+..++++.++.++++.++|+++++++.+|+.++| .|..||.||+....||..|.+||.++
T Consensus 73 Y~yGikDl~tifFY~l~~IIiHAviQEyvLDKIsKr~hlSK-------------~k~~kFnESgql~~Fy~~S~vwg~~i 139 (374)
T KOG1608|consen 73 YYYGIKDLATIFFYMLVAIIIHAVIQEYVLDKISKRLHLSK-------------VKHSKFNESGQLVAFYLFSCVWGFYI 139 (374)
T ss_pred eeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------------hhhhhhccCCeeeehhhHHhhhhhee
Confidence 56688999999999999999999999999999999998876 77899999999999999999999999
Q ss_pred eeeCCCCCChhhhccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 047636 97 SRYEPWFTNTKYFWVGPGDQIWPDQKTKLKLKGLYMYAAGFYTYSILALLFWETRRSDFVVSMTHHIATVILLALSYIFR 176 (238)
Q Consensus 97 ~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afyl~~~~~~~~~e~~RkDf~~m~~HH~~Ti~Li~~SY~~n 176 (238)
+..|.+..|+++.|.| ||++.|+...|+||+.|+|||+|.++++.|..+||+|....+.|-+..+..|+++|.+|
T Consensus 140 li~E~yl~~p~~lW~~-----yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gAYlln 214 (374)
T KOG1608|consen 140 LISEGYLSDPTSLWEG-----YPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGAYLLN 214 (374)
T ss_pred eeecccccChHHHHhc-----CCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeeeeeeccchhhHHHHHHHhhhcCCccchhhhhhHHHHHHHHHHHHHhhh
Q 047636 177 FTRVAPVVLALHDATDVFLEVAKMSKYGGFERTSSIFFTTFVFCWTVLRIICYPL 231 (238)
Q Consensus 177 f~RvG~lVl~lHDisDifL~~aK~~~y~~~~~~~~~~F~~f~~~w~~~Rl~~~P~ 231 (238)
+.|+|.+.+.||.+++.+.++++++.+.+.+ .+.+|.+++.+|+..|+...-.
T Consensus 215 l~rlgLvLl~LhYftellfHi~rlfyf~dek--~~k~fslwa~vF~l~Rl~tlii 267 (374)
T KOG1608|consen 215 LNRLGLVLLTLHYFTELLFHIARLFYFSDEK--YQKLFSLWAAVFVLGRLGTLII 267 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheecccc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877 5899999999999999987543
No 4
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.97 E-value=4.3e-31 Score=223.73 Aligned_cols=155 Identities=34% Similarity=0.621 Sum_probs=145.4
Q ss_pred HHHHHhhHHHHHHHHhhhhhheeeeeCCCCCChhhhccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhcc
Q 047636 74 NKFKESAWKCVYFLSAELLALVVSRYEPWFTNTKYFWVGPGDQIWPDQKTKLKLKGLYMYAAGFYTYSILALL-FWETRR 152 (238)
Q Consensus 74 ~Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afyl~~~~~~~-~~e~~R 152 (238)
+|+.|+.||+++++.+++.|.++++.++|++|+. .+ +|.++.++..++||.+|+||++++++... +.|.+|
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~---~~-----~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~ 72 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK---SL-----YPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKR 72 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc---cc-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 4899999999999999999999999999988887 34 89999999999999999999999998765 579999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCCeeeeeeeeeeccchhhHHHHHHHhhhcCCc--cchhhhhhHHHHHHHHHHHHHhh
Q 047636 153 SDFVVSMTHHIATVILLALSYIFRFTRVAPVVLALHDATDVFLEVAKMSKYGGFE--RTSSIFFTTFVFCWTVLRIICYP 230 (238)
Q Consensus 153 kDf~~m~~HH~~Ti~Li~~SY~~nf~RvG~lVl~lHDisDifL~~aK~~~y~~~~--~~~~~~F~~f~~~w~~~Rl~~~P 230 (238)
||++||++||++|++++..||..|++|+|.+++++||+||+|++++|++++.|.+ .+.+..+++|+++|+++|++.+|
T Consensus 73 ~d~~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p 152 (205)
T smart00724 73 KDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFP 152 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999984 77899999999999999999999
Q ss_pred hhheec
Q 047636 231 LWILRS 236 (238)
Q Consensus 231 ~~il~s 236 (238)
+.+.++
T Consensus 153 ~~~~~~ 158 (205)
T smart00724 153 FLILTV 158 (205)
T ss_pred HHHHHH
Confidence 977654
No 5
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.91 E-value=6.5e-25 Score=183.23 Aligned_cols=151 Identities=27% Similarity=0.595 Sum_probs=134.1
Q ss_pred HHHHhhHHHHHHHHhhhhhheeeeeCCCCCChhhhccCCCCCCCCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 047636 75 KFKESAWKCVYFLSAELLALVVSRYEPWFTNTKYFWVGPGDQIWPDQK---TKLKLKGLYMYAAGFYTYSILALLFWETR 151 (238)
Q Consensus 75 Kf~Es~w~~~~y~~~~~~g~~v~~~~~w~~~~~~~w~~~~~~~~P~~~---~~~~~~~yYl~q~afyl~~~~~~~~~e~~ 151 (238)
||.|+.+.+++++.++++|++++.++| ++|.+ ||+.+ .+...+.++..++||++++++.....+++
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~ 69 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDP------ELWSD-----WPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRK 69 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCc------HHhhh-----cccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 789999999999999999999999988 55554 44443 34577889999999999999987777888
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcCCeeeeeeeeeeccchhhHHHHHHHhhhc-CC-ccchhhhh--hHHHHHHHHHHHH
Q 047636 152 RSDFVVSMTHHIATVILLALSYIFRFTRVAPVVLALHDATDVFLEVAKMSKYG-GF-ERTSSIFF--TTFVFCWTVLRII 227 (238)
Q Consensus 152 RkDf~~m~~HH~~Ti~Li~~SY~~nf~RvG~lVl~lHDisDifL~~aK~~~y~-~~-~~~~~~~F--~~f~~~w~~~Rl~ 227 (238)
|+|+++|++||++|+.++..||..|+.|.|++++++||+||+||++.|++++. +. +......+ ++|+++|+.+|++
T Consensus 70 ~~d~~~~~~HH~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~ 149 (198)
T PF03798_consen 70 RGDFWEMLLHHVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV 149 (198)
T ss_pred hhhhhHhhHHHHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999 55 56677888 9999999999999
Q ss_pred Hhhhhheec
Q 047636 228 CYPLWILRS 236 (238)
Q Consensus 228 ~~P~~il~s 236 (238)
.+|+.+.+.
T Consensus 150 ~~~~~~~~~ 158 (198)
T PF03798_consen 150 LFPYLIYWV 158 (198)
T ss_pred HHHHHHHHH
Confidence 999876543
No 6
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=98.33 E-value=1.6e-06 Score=61.16 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 047636 17 SFPEAKDFVALPFFAAFFAAVRLFLDRFLFETLARRTIFGKG 58 (238)
Q Consensus 17 ~~p~~~Dl~~~~~~a~~~~~~R~~~~~~v~~pl~~~l~~~k~ 58 (238)
.-.|+.|+.++++++++++++|.+++++|++|+||+++++|+
T Consensus 22 Y~~G~~D~~fV~fy~i~~t~lRa~~m~yvl~Plar~~gi~k~ 63 (65)
T PF08390_consen 22 YGKGWDDLYFVFFYIIVFTFLRAFLMEYVLDPLARKLGISKK 63 (65)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456789999999999999999999999999999999987763
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.024 Score=50.00 Aligned_cols=140 Identities=19% Similarity=0.358 Sum_probs=90.5
Q ss_pred HHHHHHhhHHHHHHHHhhhhhheeeeeCC-CCCChhhhccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 047636 73 INKFKESAWKCVYFLSAELLALVVSRYEP-WFTNTKYFWVGPGDQIWPDQKTKLKLKGLYMYAAGFYTYSILALLFWETR 151 (238)
Q Consensus 73 ~~Kf~Es~w~~~~y~~~~~~g~~v~~~~~-w~~~~~~~w~~~~~~~~P~~~~~~~~~~yYl~q~afyl~~~~~~~~~e~~ 151 (238)
..+|....=.++.-+++..++.+.+.+.| -.-|+-.++- ..-.---+..+||.++++.-.. .+++
T Consensus 43 ~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~~~~~~~~~s-------------~~~~~l~~fS~gYfiyD~vDm~-~~~~ 108 (253)
T KOG4474|consen 43 KKRFSNLTVSLLHSTISGLWALLSLLYDPEMVDDPITYHS-------------LSAYQLLLFSAGYFIYDLVDML-MNEQ 108 (253)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHh-------------hhhHHHHHHHHHHHHHHHHHHH-hcch
Confidence 35677777777777788888877776655 2223332221 0111234567899999988654 5665
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcC-CeeeeeeeeeeccchhhHHHHHHHhhhcCCccch---hhhhhHHHHHHHHHHHH
Q 047636 152 RSDFVVSMTHHIATVILLALSYIFR-FTRVAPVVLALHDATDVFLEVAKMSKYGGFERTS---SIFFTTFVFCWTVLRII 227 (238)
Q Consensus 152 RkDf~~m~~HH~~Ti~Li~~SY~~n-f~RvG~lVl~lHDisDifL~~aK~~~y~~~~~~~---~~~F~~f~~~w~~~Rl~ 227 (238)
-.+.+|.+.||++++.-....-..+ +.- ++....+..+++|||+.=++++-.|.++-. .+.=.+=.++++..|++
T Consensus 109 s~~s~e~LvHH~v~i~aF~~~lf~~~~~~-~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~ 187 (253)
T KOG4474|consen 109 SELSWEYLVHHVVCIIAFVLGLFYSKFLG-YVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLI 187 (253)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence 6789999999999876544433333 222 456667899999999999999988765421 22222335677788874
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=59.26 E-value=5.4 Score=36.01 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHH-HHHhhcCCeeeeeeeeeeccchhhHHHHHHHhhhcCCccc-h-hhhhhHHHHHHHHHHHHHhhh
Q 047636 155 FVVSMTHHIATVILL-ALSYIFRFTRVAPVVLALHDATDVFLEVAKMSKYGGFERT-S-SIFFTTFVFCWTVLRIICYPL 231 (238)
Q Consensus 155 f~~m~~HH~~Ti~Li-~~SY~~nf~RvG~lVl~lHDisDifL~~aK~~~y~~~~~~-~-~~~F~~f~~~w~~~Rl~~~P~ 231 (238)
-.+|++||++..+.+ +.+.----+-. .-.+++-..|-+|+.....+.-+|.+.- . .+==.+..++|+..|+..+|.
T Consensus 138 ~~~fviHh~~s~~~v~~~~~~~~g~y~-~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~ 216 (281)
T KOG4561|consen 138 GIEFVIHHIASLVFVGCLLRRGVGQYY-AGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPY 216 (281)
T ss_pred CeeEEeeHHHHhhhheeeEecCcccee-eeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHH
Confidence 359999999992221 11111101112 3345667899999999998888877651 1 122236688999999997775
No 9
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=33.88 E-value=2e+02 Score=23.84 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047636 27 LPFFAAFFAAVRLFLDRFLFETLARRT 53 (238)
Q Consensus 27 ~~~~a~~~~~~R~~~~~~v~~pl~~~l 53 (238)
++...+.+.++=+++.+++++|+.+-+
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~PI~~~l 60 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALPRIGAVL 60 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677778888999999876
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.24 E-value=3.5e+02 Score=21.42 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047636 27 LPFFAAFFAAVRLFLDRFLFETLARRT 53 (238)
Q Consensus 27 ~~~~a~~~~~~R~~~~~~v~~pl~~~l 53 (238)
.++-.+.++++=+++.+++++|+.+-+
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi~~~l 36 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666778888999998775
Done!