Query 047636
Match_columns 238
No_of_seqs 124 out of 695
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 23:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkl_B SPAC19A8.12 protein, SP 16.0 1.5E+02 0.0051 21.3 3.7 50 118-168 23-77 (95)
2 1b9u_A Protein (ATP synthase); 14.0 1.9E+02 0.0065 16.1 4.2 25 28-52 8-32 (34)
3 1lql_A OSMC, osmotical inducib 12.1 2.3E+02 0.0078 21.8 4.1 30 15-44 60-89 (166)
4 2ql9_B Caspase-7; cysteine pro 6.1 3.3E+02 0.011 18.9 2.5 26 135-160 32-57 (97)
5 2dko_B Caspase-3; low barrier 5.7 3.6E+02 0.012 19.0 2.5 26 135-160 38-63 (103)
6 2a6t_A SPAC19A8.12; alpha/beta 5.1 4.8E+02 0.017 21.5 3.4 48 118-165 28-79 (271)
7 2onf_A Hypothetical protein TA 5.1 5.5E+02 0.019 18.5 3.4 27 17-43 39-65 (140)
8 2pn2_A Uncharacterized protein 5.0 6E+02 0.02 19.0 3.6 27 17-43 57-83 (155)
9 1ml8_A Hypothetical protein (C 5.0 5.2E+02 0.018 18.6 3.1 26 18-43 33-58 (134)
10 1vla_A Hydroperoxide resistanc 5.0 6.1E+02 0.021 18.8 3.6 28 17-44 46-73 (150)
No 1
>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1
Probab=16.03 E-value=1.5e+02 Score=21.28 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=34.3
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHH-----hhccchhHHHHHHHHHHHHH
Q 047636 118 WPDQKTKLKLKGLYMYAAGFYTYSILALLFW-----ETRRSDFVVSMTHHIATVIL 168 (238)
Q Consensus 118 ~P~~~~~~~~~~yYl~q~afyl~~~~~~~~~-----e~~RkDf~~m~~HH~~Ti~L 168 (238)
=|....+...+.++.+|.|+|...=+. .-. .-.-|||.+++.+|+-.+.-
T Consensus 23 ~P~eel~s~eRl~FqiEeA~WfY~Df~-~~~np~Lp~~~lk~F~~~if~~cp~L~~ 77 (95)
T 2qkl_B 23 LPAEEQSSVERLCFQIEQAHWFYEDFI-RAQNDQLPSLGLRVFSAKLFAHCPLLWK 77 (95)
T ss_dssp CCGGGSSCHHHHHHHHHHHHHHHHHTT-TTTCTTSCCCCHHHHHHHHHHHCTHHHH
T ss_pred CCHHHhhhHHHHHHHHHhheeehcccc-cccCCCCCCCcHHHHHHHHHHhCHHHHh
Confidence 588888888899999999999753210 001 11236899999999765543
No 2
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.01 E-value=1.9e+02 Score=16.07 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047636 28 PFFAAFFAAVRLFLDRFLFETLARR 52 (238)
Q Consensus 28 ~~~a~~~~~~R~~~~~~v~~pl~~~ 52 (238)
+.-++.+.++=.++.+++.+|+.+-
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~~~ 32 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLMAA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667778889999998865
No 3
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=12.09 E-value=2.3e+02 Score=21.79 Aligned_cols=30 Identities=10% Similarity=-0.166 Sum_probs=25.2
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 047636 15 YESFPEAKDFVALPFFAAFFAAVRLFLDRF 44 (238)
Q Consensus 15 ~~~~p~~~Dl~~~~~~a~~~~~~R~~~~~~ 44 (238)
++.-|+|.|++..-..+|....++.+.++.
T Consensus 60 ~~~g~nP~ELllaalaaC~~~~~~~~a~~~ 89 (166)
T 1lql_A 60 TAKGFGPLAALLSGLAACELATANLMAPAK 89 (166)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 445699999999999999999999887763
No 4
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=6.12 E-value=3.3e+02 Score=18.90 Aligned_cols=26 Identities=8% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHH
Q 047636 135 AGFYTYSILALLFWETRRSDFVVSMT 160 (238)
Q Consensus 135 ~afyl~~~~~~~~~e~~RkDf~~m~~ 160 (238)
.++|++++...+-...++.|..+|+.
T Consensus 32 GSwfIq~Lc~~l~~~~~~~dl~~ilt 57 (97)
T 2ql9_B 32 GSWFVQALCSILEEHGKDLEIMQILT 57 (97)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCCCcHHHHHH
Confidence 35677777764322246678877764
No 5
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=5.69 E-value=3.6e+02 Score=19.03 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHH
Q 047636 135 AGFYTYSILALLFWETRRSDFVVSMT 160 (238)
Q Consensus 135 ~afyl~~~~~~~~~e~~RkDf~~m~~ 160 (238)
.++|++++...+-...++.|..+|+.
T Consensus 38 GSwfIq~Lc~~l~~~~~~~dl~~ilT 63 (103)
T 2dko_B 38 GSWFIQSLCAMLKQYADKLEFMHILT 63 (103)
T ss_dssp EEHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred CCeeHHHHHHHHHHhCCcccHHHHHH
Confidence 35677777764322246678888774
No 6
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=5.15 E-value=4.8e+02 Score=21.53 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=34.0
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHH----hhccchhHHHHHHHHHH
Q 047636 118 WPDQKTKLKLKGLYMYAAGFYTYSILALLFW----ETRRSDFVVSMTHHIAT 165 (238)
Q Consensus 118 ~P~~~~~~~~~~yYl~q~afyl~~~~~~~~~----e~~RkDf~~m~~HH~~T 165 (238)
-|..+.....++++.+|-|+|.+.=+...-. .-..++|...+.||.-.
T Consensus 28 ~p~~~~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~~~~~~f~~~~f~~~~~ 79 (271)
T 2a6t_A 28 LPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPL 79 (271)
T ss_dssp SCGGGTTCHHHHHHHHHHHHHHHHHTHHHHCSSSCCCCHHHHHHHHHTTCHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHhhhhhh
Confidence 5777777788999999999998753311100 12467899999999873
No 7
>2onf_A Hypothetical protein TA0195; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE COA; 1.70A {Thermoplasma acidophilum} SCOP: d.227.1.1
Probab=5.10 E-value=5.5e+02 Score=18.48 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH
Q 047636 17 SFPEAKDFVALPFFAAFFAAVRLFLDR 43 (238)
Q Consensus 17 ~~p~~~Dl~~~~~~a~~~~~~R~~~~~ 43 (238)
.-|+|.|++..-..+|....++.+.++
T Consensus 39 ~g~~P~eLllaala~C~~~~~~~~a~~ 65 (140)
T 2onf_A 39 GQLYPETLFPSVLASCLLTTFLEFKDR 65 (140)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999988888887765
No 8
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=5.02 E-value=6e+02 Score=19.01 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=23.2
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH
Q 047636 17 SFPEAKDFVALPFFAAFFAAVRLFLDR 43 (238)
Q Consensus 17 ~~p~~~Dl~~~~~~a~~~~~~R~~~~~ 43 (238)
.-|+|.|++..-..+|....++.+.++
T Consensus 57 ~g~nP~eLllaAlaaC~~~~~~~~a~~ 83 (155)
T 2pn2_A 57 EAFSPTDLLATSLASCMLTIIGIKARD 83 (155)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999888887765
No 9
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=4.99 E-value=5.2e+02 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHH
Q 047636 18 FPEAKDFVALPFFAAFFAAVRLFLDR 43 (238)
Q Consensus 18 ~p~~~Dl~~~~~~a~~~~~~R~~~~~ 43 (238)
-|+|.|++..-..+|..+.++.+.++
T Consensus 33 g~nP~eLllaala~C~~~~~~~~a~~ 58 (134)
T 1ml8_A 33 APSPMEMVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHH
Confidence 68899999999999999989888775
No 10
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=4.95 E-value=6.1e+02 Score=18.83 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 047636 17 SFPEAKDFVALPFFAAFFAAVRLFLDRF 44 (238)
Q Consensus 17 ~~p~~~Dl~~~~~~a~~~~~~R~~~~~~ 44 (238)
.-|+|.|++..-..+|..+.++.+.++.
T Consensus 46 ~g~nP~ELllaAlaaC~~~~~~~~a~~~ 73 (150)
T 1vla_A 46 AAPRPLELVLTGLMGCTGMDVVSILRKM 73 (150)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4589999999999999999999887764
Done!