BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047639
         (260 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 83/171 (48%), Gaps = 32/171 (18%)

Query: 2   MMVPKGFRFNPTDEEL-IQILESKVSGQQMPLHFSFIVERNLYELEPQQLQS---LPENE 57
           + +P GFRF PTDEEL +Q L  K +G    L    I E +LY+ +P  L +     E E
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKALFGEKE 75

Query: 58  RYCYCMRE----NDSR--EVSGRGWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFK 111
            Y +  R+    N SR   V+G G+WKAT    KI +T         +G K+ L F+  K
Sbjct: 76  WYFFSPRDRKYPNGSRPNRVAGSGYWKATG-TDKIISTEGQ-----RVGIKKALVFYIGK 129

Query: 112 NNGRNRSNAIKTNWIMHEYTLHSLST--------DWTLCKIKYKGKPSVQE 154
                     KTNWIMHEY L   S         DW LC+I YK + S Q+
Sbjct: 130 A-----PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRI-YKKQSSAQK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 83/171 (48%), Gaps = 32/171 (18%)

Query: 2   MMVPKGFRFNPTDEEL-IQILESKVSGQQMPLHFSFIVERNLYELEPQQLQS---LPENE 57
           + +P GFRF PTDEEL +Q L  K +G    L    I E +LY+ +P  L +     E E
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKALFGEKE 72

Query: 58  RYCYCMRE----NDSR--EVSGRGWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFK 111
            Y +  R+    N SR   V+G G+WKAT    KI +T         +G K+ L F+  K
Sbjct: 73  WYFFSPRDRKYPNGSRPNRVAGSGYWKATG-TDKIISTEGQ-----RVGIKKALVFYIGK 126

Query: 112 NNGRNRSNAIKTNWIMHEYTLHSLST--------DWTLCKIKYKGKPSVQE 154
                     KTNWIMHEY L   S         DW LC+I YK + S Q+
Sbjct: 127 A-----PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRI-YKKQSSAQK 171


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 36/164 (21%)

Query: 4   VPKGFRFNPTDEELIQ-ILESKVSGQQMPLHFSFIVERNLYELEPQQLQS---LPENERY 59
           +P GFRF+PTD+EL++  L  K +GQ++P+    I E +LY+ +P  L         E Y
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 60  CYCMRE----NDSR--EVSGRGWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFKNN 113
            +  R+    N SR    +G G+WKAT   K +            +G K+ L F+  K  
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR------TLGIKKALVFYAGKA- 125

Query: 114 GRNRSNAIKTNWIMHEYTLHSLST-------------DWTLCKI 144
                  +KT+WIMHEY L                  DW LC++
Sbjct: 126 ----PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165


>pdb|1VHE|A Chain A, Crystal Structure Of A Aminopeptidase/glucanase Homolog
          Length = 373

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 75  GWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFKNNGRNRSNAIKTNWI 126
           GWW      +++      G    VIG K P   H      R +S  IK  +I
Sbjct: 94  GWWAQVXLAQRVTIVTKKGEITGVIGSKPP---HILSPEARKKSVEIKDXFI 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,526,460
Number of Sequences: 62578
Number of extensions: 292422
Number of successful extensions: 690
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 4
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)