Query 047639
Match_columns 260
No_of_seqs 167 out of 863
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 4.4E-50 1.5E-54 342.7 13.3 135 2-149 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 8.5E-50 2.9E-54 340.3 13.5 136 2-150 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 61.4 3.8 0.00013 29.6 1.9 28 4-31 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 20.2 88 0.003 23.3 3.3 37 11-53 50-87 (104)
5 3vdj_A Circumsporozoite (CS) p 15.8 69 0.0024 23.1 1.8 17 8-24 2-18 (77)
6 2jv2_A Putative uncharacterize 13.8 86 0.0029 22.7 1.9 28 15-44 27-54 (83)
7 3dct_B Nuclear receptor coacti 10.3 1.2E+02 0.0039 16.4 1.2 13 12-24 3-15 (21)
8 1q1v_A DEK protein; winged-hel 7.3 2.7E+02 0.0094 19.3 2.5 21 11-31 11-31 (70)
9 2wzp_R Lactococcal phage P2 OR 6.7 1.7E+02 0.0058 25.5 1.3 16 222-238 139-154 (375)
10 3nr5_A MAF1, repressor of RNA 6.0 1.1E+02 0.0037 25.2 -0.3 13 37-49 119-131 (164)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=4.4e-50 Score=342.73 Aligned_cols=135 Identities=37% Similarity=0.729 Sum_probs=124.0
Q ss_pred CCCCCCceEcCCHHHH-HHHHHHHHcCCCCCCCcceeeeccCCCCCCcccCCCC---CCeEEEEEecc------CCCccc
Q 047639 2 MMVPKGFRFNPTDEEL-IQILESKVSGQQMPLHFSFIVERNLYELEPQQLQSLP---ENERYCYCMRE------NDSREV 71 (260)
Q Consensus 2 ~~LPpGfRF~PTDeEL-~~YL~~Ki~g~plp~~~~~I~e~Dvy~~~Pw~Lp~~~---~~ewYFFs~~~------~r~~R~ 71 (260)
+.|||||||+|||||| .+||++|+.|.+++ ..+|.++|||.+|||+||+.+ +.+||||++++ .|.+|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~--~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLP--VPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCS--SSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCC--cCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 5799999999999999 99999999999999 789999999999999999876 78999999987 467999
Q ss_pred cCCceEEeecCceEEEEcCCCCCcceeeEEEeeeeeecccCCCCCCCCCcccCeeEeEeeecCC-------------CCC
Q 047639 72 SGRGWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFKNNGRNRSNAIKTNWIMHEYTLHSL-------------STD 138 (260)
Q Consensus 72 ~~~G~Wk~~G~~k~I~~~~~~g~~~~viG~Kk~l~Fy~~~~~~~~~~~~~kT~WvMhEY~l~~~-------------~~~ 138 (260)
+++||||++|+++.|.. ++ .+||+||+|+||.+++ +++.||+|+||||+|..+ .++
T Consensus 91 t~~G~WkatG~dk~I~~--~g----~~vG~KktLvFy~g~~-----p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~ 159 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAP--RG----RTLGIKKALVFYAGKA-----PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDD 159 (174)
T ss_dssp ETTEEEEECSCCEEECC--SS----SCCEEEEEEEEEESST-----TSCEEEEEEEEEEEECSCC-----------CCSS
T ss_pred cCCceEccCCCCcEEee--CC----cEEEEEEEEEEecCCC-----CCCCcCCeEEEEEEeCCCCCcccccccCCCCCCC
Confidence 99999999999999975 23 7999999999999988 899999999999999875 368
Q ss_pred eEEEEEEEeCC
Q 047639 139 WTLCKIKYKGK 149 (260)
Q Consensus 139 ~VLCrI~~k~~ 149 (260)
|||||||+|+.
T Consensus 160 wVlCrvf~K~~ 170 (174)
T 3ulx_A 160 WVLCRLYNKKN 170 (174)
T ss_dssp EEEEEEEESCC
T ss_pred EEEEEEEEcCC
Confidence 99999999875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=8.5e-50 Score=340.34 Aligned_cols=136 Identities=40% Similarity=0.714 Sum_probs=122.7
Q ss_pred CCCCCCceEcCCHHHH-HHHHHHHHcCCCCCCCcceeeeccCCCCCCcccCCCC---CCeEEEEEecc------CCCccc
Q 047639 2 MMVPKGFRFNPTDEEL-IQILESKVSGQQMPLHFSFIVERNLYELEPQQLQSLP---ENERYCYCMRE------NDSREV 71 (260)
Q Consensus 2 ~~LPpGfRF~PTDeEL-~~YL~~Ki~g~plp~~~~~I~e~Dvy~~~Pw~Lp~~~---~~ewYFFs~~~------~r~~R~ 71 (260)
+.|||||||+|||||| .+||++|+.|.+++ ..+|+++|||.+|||+||+.+ +++||||++++ .|.+|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~--~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFS--LQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCS--SCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCC--CCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccccc
Confidence 5799999999999999 99999999999999 789999999999999999876 78999999987 467899
Q ss_pred cCCceEEeecCceEEEEcCCCCCcceeeEEEeeeeeecccCCCCCCCCCcccCeeEeEeeecCC--------CCCeEEEE
Q 047639 72 SGRGWWKATSHVKKIYATNNNGSCADVIGYKRPLTFHKFKNNGRNRSNAIKTNWIMHEYTLHSL--------STDWTLCK 143 (260)
Q Consensus 72 ~~~G~Wk~~G~~k~I~~~~~~g~~~~viG~Kk~l~Fy~~~~~~~~~~~~~kT~WvMhEY~l~~~--------~~~~VLCr 143 (260)
|++||||++|+++.|.. ++ .+||+||+|+||.+++ +++.||+|+||||+|... .++|||||
T Consensus 93 t~~G~Wk~tG~~k~I~~--~~----~~vG~KktLvFy~g~~-----p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCr 161 (171)
T 1ut7_A 93 AGSGYWKATGTDKIIST--EG----QRVGIKKALVFYIGKA-----PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCR 161 (171)
T ss_dssp ETTEEEEEEEEEEEEEE--TT----EEEEEEEEEEEEESST-----TSCEEEEEEEEEEEECCCC--------CCEEEEE
T ss_pred CCCCEEeccCCCceEEe--cC----cEEEEEEEEEEEcCcC-----CCCCcCCeEEEEEEcCCCccccCcccCCCEEEEE
Confidence 99999999999999986 33 8999999999999988 899999999999999865 47999999
Q ss_pred EEEeCCC
Q 047639 144 IKYKGKP 150 (260)
Q Consensus 144 I~~k~~~ 150 (260)
||+|...
T Consensus 162 v~~k~~~ 168 (171)
T 1ut7_A 162 IYKKQSS 168 (171)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=61.43 E-value=3.8 Score=29.61 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCCCceEcC-CHHHHHHHHHHHHcCCCCC
Q 047639 4 VPKGFRFNP-TDEELIQILESKVSGQQMP 31 (260)
Q Consensus 4 LPpGfRF~P-TDeEL~~YL~~Ki~g~plp 31 (260)
.|.|+.|.. |++||..||..|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 477999999 9999999999999988765
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.18 E-value=88 Score=23.35 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=27.7
Q ss_pred cCCHHHH-HHHHHHHHcCCCCCCCcceeeeccCCCCCCcccCCC
Q 047639 11 NPTDEEL-IQILESKVSGQQMPLHFSFIVERNLYELEPQQLQSL 53 (260)
Q Consensus 11 ~PTDeEL-~~YL~~Ki~g~plp~~~~~I~e~Dvy~~~Pw~Lp~~ 53 (260)
+-|..|| +.-...-..|+||| .+.|+....|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP------~D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLP------DDADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCC------CGGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCC------CchhhhhcCCccchHH
Confidence 4577888 44444567899999 5778988899988853
No 5
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=15.83 E-value=69 Score=23.14 Aligned_cols=17 Identities=24% Similarity=0.557 Sum_probs=13.6
Q ss_pred ceEcCCHHHHHHHHHHH
Q 047639 8 FRFNPTDEELIQILESK 24 (260)
Q Consensus 8 fRF~PTDeEL~~YL~~K 24 (260)
+.|.||+++|..||.+-
T Consensus 2 ~~~~p~~~~i~~~l~ki 18 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLNKI 18 (77)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 46899999998888753
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=13.77 E-value=86 Score=22.68 Aligned_cols=28 Identities=7% Similarity=0.314 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCCCCCCcceeeeccCCC
Q 047639 15 EELIQILESKVSGQQMPLHFSFIVERNLYE 44 (260)
Q Consensus 15 eEL~~YL~~Ki~g~plp~~~~~I~e~Dvy~ 44 (260)
..+..||++++.|.|+- .+-+..+++++
T Consensus 27 ~~~~~~lk~~L~grPV~--~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDFVDVIRIKLQGKTVR--TGDVIGISILG 54 (83)
T ss_dssp HHHHHHHHHHHTTSEEC--TTCEEEEEETT
T ss_pred ccHHHHHHHHHCCCCcc--CCCEEEEeeCC
Confidence 55589999999999987 44455566654
No 7
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=10.35 E-value=1.2e+02 Score=16.43 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHH
Q 047639 12 PTDEELIQILESK 24 (260)
Q Consensus 12 PTDeEL~~YL~~K 24 (260)
+.|.+|..||..|
T Consensus 3 ~kdhqllrylldk 15 (21)
T 3dct_B 3 SKDHQLLRYLLDK 15 (26)
T ss_pred hhHHHHHHHHHcc
Confidence 5688886777644
No 8
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=7.28 E-value=2.7e+02 Score=19.26 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHHcCCCCC
Q 047639 11 NPTDEELIQILESKVSGQQMP 31 (260)
Q Consensus 11 ~PTDeEL~~YL~~Ki~g~plp 31 (260)
-|||+||...++.-+.+.+|.
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~ 31 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLE 31 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGG
T ss_pred CcCHHHHHHHHHHHHHhCCHH
Confidence 599999977777777766654
No 9
>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_Y 2x54_Y 2x5a_Y
Probab=6.70 E-value=1.7e+02 Score=25.45 Aligned_cols=16 Identities=50% Similarity=0.929 Sum_probs=14.2
Q ss_pred CCCCCCCCccccccccc
Q 047639 222 DPFSTQTMSTGYDYFND 238 (260)
Q Consensus 222 ~~~~~~~~~~g~~~~~~ 238 (260)
+|+-++.||-|| ||+.
T Consensus 139 dpnknnlmsygy-ffns 154 (375)
T 2wzp_R 139 DPNKNNLMSYGY-FFNS 154 (375)
T ss_dssp CTTTCSSCCCCE-EECG
T ss_pred CCCcccceeeee-eecc
Confidence 689999999999 8875
No 10
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=5.97 E-value=1.1e+02 Score=25.16 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.7
Q ss_pred eeeccCCCCCCcc
Q 047639 37 IVERNLYELEPQQ 49 (260)
Q Consensus 37 I~e~Dvy~~~Pw~ 49 (260)
+.++|||+..|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5778999999983
Done!