BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047640
(111 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255583629|ref|XP_002532570.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
gi|223527725|gb|EEF29831.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
Length = 308
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 68/100 (68%), Gaps = 7/100 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ------- 55
D M+PF ELLA +NPA +NS RILRVM+E++RAMGSQG+VEGQYNE Q Q
Sbjct: 154 DGMIPFAFELLAQLNNPAQDNSDRILRVMIEISRAMGSQGMVEGQYNEFQYDQSVGDELF 213
Query: 56 YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+V + KK EG H C ACGAILGGG+ EEIEK R
Sbjct: 214 HVAWLRDVCKKKEGASHACAGACGAILGGGNEEEIEKLRR 253
>gi|164605008|dbj|BAF98300.1| geranyl-diphosphate synthase [Hevea brasiliensis]
Length = 306
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 69/102 (67%), Gaps = 7/102 (6%)
Query: 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ----- 55
+AD ++P+G ELLA D+ A NNS R+LR ++E++RAMGSQGV+EGQYNE Q +
Sbjct: 146 IADGIIPYGFELLARDDDAAENNSNRVLRAIIEISRAMGSQGVIEGQYNESQYEESEGEE 205
Query: 56 --YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+V +K EG LH C ACGAILGGGS +EIEK R
Sbjct: 206 IFHVGWLQNVCRKKEGTLHACAGACGAILGGGSEDEIEKLRR 247
>gi|46241272|gb|AAS82859.1| geranyl diphosphate synthase small subunit [Antirrhinum majus]
Length = 297
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D ++PFGLEL+A S +P NN RILR ++E+TR MGS+G+VEGQY+EL +Q ++
Sbjct: 145 DGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELI 204
Query: 63 TY--KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
Y KK EG LH CGAACGAILGG ++IEK R
Sbjct: 205 EYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRR 239
>gi|224135433|ref|XP_002322072.1| predicted protein [Populus trichocarpa]
gi|222869068|gb|EEF06199.1| predicted protein [Populus trichocarpa]
Length = 236
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ--YVEMT 60
D M+PFGLELLA SD+ NNS RILRV++E+T+AMGSQG+ GQYN+ Q Q Y++
Sbjct: 103 DGMVPFGLELLAKSDDLTQNNSERILRVIIEITQAMGSQGMALGQYNQFQHGQSDYID-- 160
Query: 61 YETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-GLIIKITKMMIRN 108
KK EG LH+C A GAILGGG+ EEIEK R GL + + + ++ N
Sbjct: 161 -HVCKKKEGELHSCAGAVGAILGGGTEEEIEKLRRYGLYVGLMQGVLSN 208
>gi|323463187|pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
gi|323463188|pdb|3QKC|A Chain A, Crystal Structure Of Geranyl Diphosphate Synthase Small
Subunit From Antirrhinum Majus
Length = 273
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D ++PFGLEL+A S +P NN RILR ++E+TR MGS+G+VEGQY+EL +Q ++
Sbjct: 113 DGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELI 172
Query: 63 TY--KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
Y KK EG LH CGAACGAILGG ++IEK R
Sbjct: 173 EYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRR 207
>gi|229915238|gb|ACQ90681.1| geranyl diphosphate synthase small subunit [Humulus lupulus]
Length = 279
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 7/99 (7%)
Query: 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS------ 54
M DA+LP G ELLA S NPA NNS R+LRV+VE RA GS+G+++GQY + S
Sbjct: 120 MPDAILPLGFELLAQSYNPAQNNSDRVLRVIVEFARAFGSKGILDGQYRQRVVSISNGDE 179
Query: 55 -QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + ++ EG +H C AACGAILG + EE EK
Sbjct: 180 VDNAERVDCSGREKEGKMHACAAACGAILGDANEEETEK 218
>gi|225460953|ref|XP_002278023.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
chloroplastic [Vitis vinifera]
Length = 298
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 13/115 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNN--SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE-- 58
D M+PFGLELLA S+N ++ S RIL+V++E+TR +GSQGVV GQY + QC +
Sbjct: 146 DGMIPFGLELLAKSNNLDDDDEHSDRILQVIIELTRTIGSQGVVNGQYIQAQCDESSPSV 205
Query: 59 ----MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKK-----FRGLIIKITKM 104
T K LH CGAACGAILGGG +EIEK + G I K++K+
Sbjct: 206 GKAGSTRIVTDKKGTELHACGAACGAILGGGKEKEIEKLRKYGFYAGTIQKMSKL 260
>gi|147776970|emb|CAN63418.1| hypothetical protein VITISV_007690 [Vitis vinifera]
Length = 298
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 71/115 (61%), Gaps = 13/115 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNN--SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE-- 58
D M+PFGLELLA S+N ++ S RIL+V++E+TR +GSQGVV GQY + QC +
Sbjct: 146 DGMIPFGLELLAKSNNLDDDDEHSDRILQVIIELTRXIGSQGVVNGQYIQAQCDESSPSV 205
Query: 59 ----MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKK-----FRGLIIKITKM 104
T K LH CGAACGAILGGG +EIEK + G I K++K+
Sbjct: 206 GKAGSTRIVTDKKGTELHACGAACGAILGGGKEKEIEKLRKYGFYAGTIQKMSKL 260
>gi|46241300|gb|AAS82870.1| geranyl diphosphate synthase small subunit [Clarkia breweri]
Length = 300
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 13/102 (12%)
Query: 3 DAMLPFGLELLASSDNPAGN--NSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D MLP ELLA+S+ AG+ S RILRV+VE+++A GS+G+++G+YNELQ + T
Sbjct: 130 DGMLPLAFELLANSEG-AGDESRSRRILRVIVEISKAAGSEGLLKGEYNELQLGRLAGFT 188
Query: 61 YETYK----------KNEGGLHTCGAACGAILGGGSVEEIEK 92
++ K EGGLH C AACG ILGGG+ EEIEK
Sbjct: 189 GGDWRDAFWMDHVCGKKEGGLHACAAACGGILGGGTEEEIEK 230
>gi|449444204|ref|XP_004139865.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase
small subunit, chloroplastic-like [Cucumis sativus]
gi|449502924|ref|XP_004161781.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase
small subunit, chloroplastic-like [Cucumis sativus]
Length = 300
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D + P G E+LA S + + S R+ RVMVE+ RAMG++G + GQ+ L+ VE E
Sbjct: 152 DGITPMGFEILAESCDWSERGSERVRRVMVEVARAMGTEGWIGGQFRGLEEEATVE---E 208
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKITKMMI 106
+K EGGLH CG ACGAI+GGG+ EEIEK K G++ +T+++
Sbjct: 209 VIEKTEGGLHACGGACGAIMGGGNEEEIEKMRKYGKLVGIVKGLTQIVF 257
>gi|351725007|ref|NP_001238613.1| geranyl-diphosphate synthase [Glycine max]
gi|166835923|gb|ABY90133.1| geranyl-diphosphate synthase [Glycine max]
Length = 283
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS------QY 56
D ++PFG ELLA D PA + R+LRVM+E++RA+GS G+ + QY + Q
Sbjct: 136 DGIVPFGFELLARPDGPASASPERVLRVMIEISRAVGSVGLQDAQYVKKTLWDGGEEVQN 195
Query: 57 VE-MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
VE M +K +GGLH CGAA GAILGGGS ++IE+
Sbjct: 196 VESMQRFVLEKRDGGLHACGAASGAILGGGSEDQIER 232
>gi|148887805|gb|ABR15421.1| geranyl pyrophosphate synthase small subunit [Mentha canadensis]
Length = 313
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNE---LQCSQYVE 58
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + + ++
Sbjct: 157 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLD 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
KK G +H CGAACGAILGG + EEI+K
Sbjct: 217 FIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 250
>gi|6449050|gb|AAF08792.1|AF182827_1 geranyl diphosphate synthase small subunit [Mentha x piperita]
gi|10637873|emb|CAC10560.1| gpp synthase small subunit [Mentha x piperita]
Length = 313
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNE---LQCSQYVE 58
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + + ++
Sbjct: 157 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLD 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
KK G +H CGAACGAILGG + EEI+K
Sbjct: 217 FIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 250
>gi|158979015|gb|ABW86880.1| geranyl pyrophosphate synthase small subunit [Mentha x piperita]
Length = 313
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNE---LQCSQYVE 58
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + + ++
Sbjct: 157 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLD 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
KK G +H CGAACGAILGG + EEI+K
Sbjct: 217 FIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 250
>gi|289526778|pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
gi|289526779|pdb|3KRA|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
gi|289526782|pdb|3KRC|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
gi|289526783|pdb|3KRC|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
gi|289526786|pdb|3KRF|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
gi|289526787|pdb|3KRF|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
gi|289526790|pdb|3KRO|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
gi|289526791|pdb|3KRO|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
gi|289526794|pdb|3KRP|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
gi|289526795|pdb|3KRP|C Chain C, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
Length = 274
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNE---LQCSQYVE 58
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + + ++
Sbjct: 110 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLD 169
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
KK G +H CGAACGAILGG + EEI+K
Sbjct: 170 FIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 203
>gi|310942864|pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942865|pdb|3OAB|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942868|pdb|3OAC|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942869|pdb|3OAC|C Chain C, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 264
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNE---LQCSQYVE 58
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + + ++
Sbjct: 100 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLD 159
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
KK G +H CGAACGAILGG + EEI+K
Sbjct: 160 FIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 193
>gi|374639379|gb|AEZ55678.1| geranyl diphosphate synthase small subunit type I [Salvia
miltiorrhiza]
Length = 314
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ-CSQYVEMTY 61
D M FG ELLA S N RILRV++E++RA GS+G+++G Y E + Q+ +
Sbjct: 156 DGMASFGFELLAGSIRSDHPNPERILRVIIEISRASGSEGIIDGFYREKEIVDQHSRFDF 215
Query: 62 ETY--KKNEGGLHTCGAACGAILGGGSVEEIEK 92
Y +K G +H C AA GAIL GG+ EEI+K
Sbjct: 216 IEYLCRKKYGEMHACAAASGAILAGGAEEEIQK 248
>gi|428229702|gb|AFY98640.1| geranyl-diphosphate synthase [Phaseolus vulgaris]
Length = 273
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D ++PFG ELLA P + R++RV++E++RA+GS G++ + LQ + VE E
Sbjct: 132 DGIVPFGFELLARGAGPGRGSPERVMRVIIEISRAVGSGGLI----DSLQMKKSVEGEVE 187
Query: 63 TYKK---NEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ K+ EGGLH GA GA++GGGS IE+ R
Sbjct: 188 SVKRVWXREGGLHAWGAPLGAVVGGGSEGGIERVRR 223
>gi|388519261|gb|AFK47692.1| unknown [Medicago truncatula]
Length = 297
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 74/118 (62%), Gaps = 13/118 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS-QGVVEGQYNELQCSQ------ 55
D ++PFG ELLA SD G NS RIL+VMVE++RA+GS GV++ QY ++ S
Sbjct: 148 DGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDAQYGKILYSGSDGEEK 205
Query: 56 -YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE--KKFRGLIIKITKMMIRNSF 110
+VE +K EG LH+CGA CG +LGGG EEIE +KF G + I + MI+ F
Sbjct: 206 CHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKF-GYYVGIIQGMIKWGF 262
>gi|357494535|ref|XP_003617556.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
gi|355518891|gb|AET00515.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
Length = 297
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 74/118 (62%), Gaps = 13/118 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS-QGVVEGQYNELQCSQ------ 55
D ++PFG ELLA SD G NS RIL+VMVE++RA+GS GV++ QY ++ S
Sbjct: 148 DGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDAQYGKILYSGSDGEEK 205
Query: 56 -YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE--KKFRGLIIKITKMMIRNSF 110
+VE +K EG LH+CGA CG +LGGG EEIE +KF G + I + MI+ F
Sbjct: 206 CHVEEIRHVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKF-GYYVGIIQGMIKWGF 262
>gi|342360000|gb|AEL29573.1| geranyl-diphosphate synthase [Medicago sativa]
Length = 301
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 75/121 (61%), Gaps = 19/121 (15%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS-QGVVEGQY----------NEL 51
D ++PFG ELLA SD G NS RIL+VMVE++RA+GS GV++ QY +E+
Sbjct: 152 DGIVPFGFELLARSD--GGENSERILKVMVEISRAVGSGGGVIDAQYMKTLGGGSDGDEI 209
Query: 52 QCSQYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE--KKFRGLIIKITKMMIRNS 109
C +VE +K EG LH+CGA CG +LGGG EEIE +KF G + I + MI+
Sbjct: 210 -C--HVEEIRRVVEKYEGRLHSCGAVCGGVLGGGCEEEIERLRKF-GFYVGIIQGMIKWG 265
Query: 110 F 110
F
Sbjct: 266 F 266
>gi|297797830|ref|XP_002866799.1| hypothetical protein ARALYDRAFT_912293 [Arabidopsis lyrata subsp.
lyrata]
gi|297312635|gb|EFH43058.1| hypothetical protein ARALYDRAFT_912293 [Arabidopsis lyrata subsp.
lyrata]
Length = 310
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P G + S P ILRV+ E+ R +GS G+ GQY +L+ + +
Sbjct: 147 DALFPLGFHHIVSHTPPELVPRATILRVIAEIARTVGSTGMAAGQYVDLEGGPFPPSFVQ 206
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+K G + C A CG +LGG + +E+E R
Sbjct: 207 --EKKFGAMGECSAVCGGLLGGATEDELESLRR 237
>gi|325516286|gb|ADZ24721.1| geranylgeranyl pyrophosphate synthase 4 [Solanum pennellii]
Length = 334
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMT 60
DA+ P G + + S RILRV+ E+ RA+GS G+ GQ+ +L+ V+
Sbjct: 153 GDALFPLGFQHIVSHTPSDLVPEDRILRVITEIARAVGSTGMAAGQFLDLEGGPNAVDFV 212
Query: 61 YETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E K G + C A CGA+L G S EEI+
Sbjct: 213 QE---KKYGEMGECSAVCGALLAGASDEEIQ 240
>gi|260893255|ref|YP_003239352.1| polyprenyl synthetase [Ammonifex degensii KC4]
gi|260865396|gb|ACX52502.1| Polyprenyl synthetase [Ammonifex degensii KC4]
Length = 286
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE---M 59
DA+L G ELLA + A S LRV+VE+ RA GS+G+V GQ +L S+ + +
Sbjct: 116 DALLTLGFELLARAALVARQGSEVGLRVIVEVARAAGSEGMVGGQVLDLGGSKNADPALL 175
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E ++K G L GA+LGG E ++K
Sbjct: 176 LEEIHRKKTGALFVAAVRAGALLGGAQEEALQK 208
>gi|356559416|ref|XP_003547995.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Glycine max]
Length = 367
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A+S G + GRI+R + E+ R++GS+G+V GQ ++ ++
Sbjct: 185 GDALLAFAFEHIAASTR--GASPGRIVRAIGELARSIGSEGLVAGQVVDINSEGLADVDL 242
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
E + L GAILGGG+ +E+EK ++ GL+ ++
Sbjct: 243 ERLEFIHVHKTAALLEGAVVLGAILGGGTDDEVEKLRKFARYIGLLFQV 291
>gi|255577858|ref|XP_002529802.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
gi|223530713|gb|EEF32584.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
Length = 345
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMT 60
DA+ P G + S R+LRV+ E+ RA+GS G+ GQ+ +L+ +VE
Sbjct: 164 GDALFPLGYRHIVSHTPTGLVPEPRLLRVIAEIARAVGSTGMAAGQFLDLEGGPSFVEFA 223
Query: 61 YETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
E K G + C A CG +L G +EI++ R
Sbjct: 224 QE---KKYGEMSECSAVCGGLLAGAEDDEIQRLRR 255
>gi|15233848|ref|NP_195558.1| geranylgeranyl diphosphate synthase, type II [Arabidopsis thaliana]
gi|85680919|sp|Q39108.2|GGR_ARATH RecName: Full=Heterodimeric geranylgeranyl pyrophosphate synthase
small subunit, chloroplastic; Flags: Precursor
gi|11908118|gb|AAG41488.1|AF326906_1 putative geranylgeranyl pyrophosphate synthase-related protein
[Arabidopsis thaliana]
gi|12642930|gb|AAK00407.1|AF339725_1 putative geranylgeranyl pyrophosphate synthase-related protein
[Arabidopsis thaliana]
gi|13926334|gb|AAK49631.1|AF372915_1 AT4g38460/F20M13_20 [Arabidopsis thaliana]
gi|4467133|emb|CAB37502.1| geranylgeranyl pyrophosphate synthase-related protein [Arabidopsis
thaliana]
gi|7270829|emb|CAB80510.1| geranylgeranyl pyrophosphate synthase-related protein [Arabidopsis
thaliana]
gi|16323260|gb|AAL15364.1| AT4g38460/F20M13_20 [Arabidopsis thaliana]
gi|21555524|gb|AAM63877.1| geranylgeranyl pyrophosphate synthase-related protein [Arabidopsis
thaliana]
gi|332661530|gb|AEE86930.1| geranylgeranyl diphosphate synthase, type II [Arabidopsis thaliana]
Length = 326
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P + + S P ILR++ E+ R +GS G+ GQY +L+ + +++
Sbjct: 158 DALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPF-PLSFV 216
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
KK G + C A CG +LGG + +E++ R
Sbjct: 217 QEKKF-GAMGECSAVCGGLLGGATEDELQSLRR 248
>gi|356498416|ref|XP_003518048.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Glycine max]
Length = 350
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A+S G ++ RILR + E+ R++GS+G+V GQ ++ ++
Sbjct: 168 GDALLAFAFEHIAASTR--GASAPRILRAIGELARSIGSEGLVAGQVVDINSEGLADVGL 225
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
E + L GAILGGG+ +E+EK ++ GL+ ++
Sbjct: 226 ERLEFIHVHKTAALLEGAVVLGAILGGGTDDEVEKLRKFARYIGLLFQV 274
>gi|735880|gb|AAA81879.1| geranylgeranyl pyrophosphate synthase-related protein [Arabidopsis
thaliana]
Length = 326
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P + + S P ILR++ E+ R +GS G+ GQY +L+ + +++
Sbjct: 158 DALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPF-PLSFV 216
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
KK G + C A CG +LGG + +E++ R
Sbjct: 217 QEKKF-GAMGECSAVCGGLLGGATEDELQSLRR 248
>gi|11692820|gb|AAG40013.1|AF324662_1 AT4g38460 [Arabidopsis thaliana]
Length = 326
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P + + S P ILR++ E+ R +GS G+ GQY +L+ + +++
Sbjct: 158 DALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPF-PLSFV 216
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
KK G + C A CG +LGG + +E++ R
Sbjct: 217 QEKKF-GAMGECSAVCGGLLGGATEDELQSLRR 248
>gi|224284786|gb|ACN40123.1| unknown [Picea sitchensis]
Length = 369
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-------Q 55
DA+ P G E + SS + + RI++V+ ++ + +GSQG+V GQY +L +
Sbjct: 191 DALFPLGFEYIVSSTSDVPPD--RIVKVIAQIAKTVGSQGMVVGQYMDLGSTGNNKFDPS 248
Query: 56 YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
VE +E + G + C A G I+GG + EE+E+
Sbjct: 249 LVEFIHE---RKFGIMAECSAVTGGIIGGATDEEVER 282
>gi|215433848|gb|ACJ66778.1| geranylgeranyl diphosphate synthase [Salvia miltiorrhiza]
Length = 364
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ G RIL + E+ +A+G++G+V GQ +L C+ +
Sbjct: 182 GDALLAFAFEFMATATT--GVAPERILAAVGELAKAIGTEGLVAGQVVDLNCTGDANVGL 239
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+T + L GAILGGGS ++IEK
Sbjct: 240 DTLEFIHIHKTAALLEASVVLGAILGGGSSDQIEK 274
>gi|237783596|gb|ACR19637.1| geranylgeranyl diphosphate synthase [Salvia miltiorrhiza]
Length = 364
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ G RIL + E+ +A+G++G+V GQ +L C+ +
Sbjct: 182 GDALLAFAFEFMATATT--GVAPERILAAVGELAKAIGTEGLVAGQVVDLNCTGDANVGL 239
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+T + L GAILGGGS ++IEK
Sbjct: 240 DTLEFIHIHKTAALLEASVVLGAILGGGSSDQIEK 274
>gi|374639383|gb|AEZ55680.1| geranyl diphosphate synthase small subunit type II.2 [Salvia
miltiorrhiza]
Length = 331
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ-CSQYVEMTY 61
DA+ P G + S R+LRV+ E+ RA+GS G+ GQ+ +L+ V++
Sbjct: 151 DALFPLGFRHIVSHTPTDLVPHTRLLRVIAEIARAVGSTGMAAGQFLDLEGGPNAVDLVQ 210
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E K G + C A CG +L G S +EIE
Sbjct: 211 E---KKFGEMGQCSAVCGGLLAGASDDEIE 237
>gi|148279681|gb|ABQ53935.1| geranylgeranyl pyrophosphate synthase [Nicotiana attenuata]
Length = 366
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L F E +A++ AG + RIL + E+ +++G++G+V GQ ++ C+ +
Sbjct: 184 GDSLLAFAFEFIATAT--AGVSPSRILAAIGELAKSIGTEGLVAGQVADIACTGNPNVGL 241
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T + L GAILGGG+ EE+EK R
Sbjct: 242 DTLEFIHIHKTAALLEASVVLGAILGGGTDEEVEKLRR 279
>gi|168203181|gb|ACA21461.1| geranylgeranyl diphosphate synthase 5 [Picea abies]
gi|224285639|gb|ACN40538.1| unknown [Picea sitchensis]
Length = 382
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S + + S RILRV+ E+ R +GSQG+V GQ ++ +
Sbjct: 199 GDALLSFAFEHIAVSTSKS-VGSDRILRVVSELGRTIGSQGLVGGQVADITSEGNASVDL 257
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T + L C CGAI+ G S EIE+ R
Sbjct: 258 DTLEWIHIHKTAVLLECSVVCGAIISGASENEIERVKR 295
>gi|350537639|ref|NP_001234302.1| geranylgeranyl pyrophosphate synthase 2 [Solanum lycopersicum]
gi|82547882|gb|ABB82555.1| geranylgeranyl pyrophosphate synthase 2 [Solanum lycopersicum]
Length = 363
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----VE 58
DA+L F E LA++ G RIL + E+ +++G++G+V GQ +L C+ +E
Sbjct: 182 DALLAFAFEYLATATT--GVPPSRILVAVAELAKSVGTEGLVAGQVADLACTGNPNVGLE 239
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
M + L GAILGGG+ EE++K R
Sbjct: 240 MLEFIHIHKTAALLEASVVIGAILGGGADEEVDKLRR 276
>gi|449454249|ref|XP_004144868.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase
small subunit, chloroplastic-like [Cucumis sativus]
gi|449508802|ref|XP_004163415.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase
small subunit, chloroplastic-like [Cucumis sativus]
Length = 335
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMT 60
DA+ P G + + S R+LRV+ E+ RA+GS+G+ GQ+ +L+ VE
Sbjct: 152 GDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFV 211
Query: 61 YETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
E K G + C A CG +L G EI++ R
Sbjct: 212 QE---KKFGEMAQCSAVCGGLLAGAEDHEIQRLRR 243
>gi|224286499|gb|ACN40956.1| unknown [Picea sitchensis]
Length = 383
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S + S R+LRV+ E+ RA+GS+GV GQ ++ +
Sbjct: 200 GDALLSFAFEHIAVSTSKT-VESDRVLRVVSELGRAIGSEGVAGGQVADITSQGNPSVGL 258
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
ET + L C A GAI+GG S +EIE+
Sbjct: 259 ETLEWIHIHKTAVLLECSVASGAIIGGASDDEIER 293
>gi|269996470|gb|ACZ57571.1| isoprenyl diphosphate synthase [Picea abies]
Length = 383
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S + S R+LRV+ E+ RA+GS+GV GQ ++ +
Sbjct: 200 GDALLSFAFEHIAVSTSKT-VESDRVLRVVSELGRAIGSEGVAGGQVADITSQGNPSVGL 258
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
ET + L C A GAI+GG S +EIE+
Sbjct: 259 ETLEWIHIHKTAVLLECSVASGAIIGGASDDEIER 293
>gi|290575614|gb|ADD49734.1| geranylgeranyl diphosphate synthase [Nicotiana tabacum]
Length = 366
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L F E +A++ AG + RIL + E+ +++G++G+V GQ ++ C+ +
Sbjct: 184 GDSLLAFAFEYIATAT--AGVSPSRILAAIGELAKSIGTEGLVAGQVADIACTGNPNVGL 241
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+T + L GAILGGG+ EE+EK
Sbjct: 242 DTLEFIHIHKTAALLEASVVLGAILGGGTDEEVEK 276
>gi|325516282|gb|ADZ24719.1| geranylgeranyl pyrophosphate synthase 2 [Solanum pennellii]
Length = 363
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----VE 58
DA+L F E LA++ G RIL + E+ +++G++G+V GQ +L C+ +E
Sbjct: 182 DALLAFAFEYLATAT--IGVPPSRILVAVAELAKSVGTEGLVAGQVADLACTGNPNVGLE 239
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
M + L GAILGGG+ EE++K R
Sbjct: 240 MLEFIHIHKTAALLEASVVIGAILGGGADEEVDKLRR 276
>gi|34484306|gb|AAQ72786.1| geranylgeranyl diphosphate synthase [Ginkgo biloba]
gi|157072687|gb|ABV08866.1| geranylgeranyl diphosphate synthase [Ginkgo biloba]
gi|157072689|gb|ABV08867.1| geranylgeranyl diphosphate synthase [Ginkgo biloba]
Length = 391
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A S + S R+LRV+ E+ ++MGS+G+V GQ ++ + +
Sbjct: 209 DALLSFAFEHIARSTSKT-VESERVLRVICELGKSMGSEGLVAGQIVDIASEGDTSVDLK 267
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKI 101
T + L C GAI+GG S EEIE+ R GL+ ++
Sbjct: 268 TLEYIHLHKTAVLLECSVVSGAIIGGASEEEIERTRRYARCVGLLFQV 315
>gi|224080676|ref|XP_002306207.1| predicted protein [Populus trichocarpa]
gi|222849171|gb|EEE86718.1| predicted protein [Populus trichocarpa]
Length = 258
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ-CSQYVEMTY 61
DA+ P G + S R+LRV+ E+ RA+GS+G+ GQ+ +L+ VE
Sbjct: 165 DALFPLGFSHIVSQTPSDLVPEPRLLRVIAEIARAVGSRGMAAGQFLDLEGGPNAVEFVQ 224
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E K G + C A CG +L G + +EI +
Sbjct: 225 E---KKYGEMGECSAVCGGLLAGATDDEIRR 252
>gi|164605014|dbj|BAF98303.1| geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
Length = 306
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMTY 61
DA+ P G + S+ R+LRV+ E+ RA+GS G+ GQ+ +L+ S E
Sbjct: 125 DALFPLGFRHIVSNTPSDLVPEPRLLRVIAEIARAVGSTGMAAGQFLDLEGSLNSAEFVQ 184
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
E K G + C A CG +L G +EI++ R
Sbjct: 185 E---KKYGEMGECSAVCGGLLAGAEDDEIQRLRR 215
>gi|428215155|ref|YP_007088299.1| geranylgeranyl pyrophosphate synthase [Oscillatoria acuminata PCC
6304]
gi|428003536|gb|AFY84379.1| geranylgeranyl pyrophosphate synthase [Oscillatoria acuminata PCC
6304]
Length = 308
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 3 DAMLPFGLELLASSDN--PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E++A+ PA R+L+ + + A G+ GVV GQ ++QC ++ T
Sbjct: 128 DGLLVYAFEVVATQTQNVPAP----RVLKAIAHLAHAFGADGVVGGQVVDIQCEGKLDTT 183
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + G L CGAILGG + E++++ R
Sbjct: 184 VETLHFIHTHKTGALLEACVVCGAILGGAADEDLQRLSR 222
>gi|17352451|gb|AAL17614.2|AF425235_1 geranylgeranyl diphosphate synthase [Abies grandis]
Length = 383
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S + + + RILRV+ E+ R +GSQG+V GQ ++ +
Sbjct: 200 GDALLSFAFEHIAVSTSKS-VGTDRILRVVSELGRTIGSQGLVGGQVADITSEGDASVDL 258
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+T + L C CGAI+ G S EIE+
Sbjct: 259 DTLEWIHIHKTAVLLECSVMCGAIISGASDNEIER 293
>gi|10801562|dbj|BAB16694.1| GGPP synthase 2 [Nicotiana tabacum]
Length = 127
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F E +A++ AG + RIL + E+ +++G++G+V GQ ++ C+ + +
Sbjct: 25 DSLLAFAFEYIATA--TAGVSPSRILAAIGELAKSIGTEGLVAGQVADIACTGNPNVGLD 82
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + L GAILGGG+ EE+EK
Sbjct: 83 TLEFIHIHKTAALLEASVVLGAILGGGTDEEVEK 116
>gi|295322739|gb|ADG01841.1| geranylgeranyl-diphosphate synthase [Medicago sativa]
Length = 370
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S AG + RI+R + E+ +++GS+G+V GQ ++ ++
Sbjct: 188 GDALLAFAFEHIAVST--AGVSPARIVRAIGELAKSIGSEGLVAGQVVDINSEGLSDVGL 245
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
E + L GAILGGGS E++EK ++ GL+ ++
Sbjct: 246 EQLEFIHLHKTAALLEGAVVLGAILGGGSDEDVEKLRKFARYIGLLFQV 294
>gi|356538045|ref|XP_003537515.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Glycine max]
Length = 355
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A+S G + R++R + E+ +++G++G+V GQ ++ +
Sbjct: 173 GDALLAFAFEHVAASTE--GVSPSRVVRAIGELAKSIGTEGLVAGQVVDIDSEGVANVGL 230
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
ET + L GAI+GGGS EE+EK
Sbjct: 231 ETLEFIHVHKTAALLEAAVVLGAIVGGGSDEEVEK 265
>gi|10801560|dbj|BAB16693.1| GGPP synthase 1 [Nicotiana tabacum]
Length = 127
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F E +A++ AG + RIL + E+ +++G++G+V GQ ++ C+ + +
Sbjct: 25 DSLLAFAFEYIAAA--TAGVSPSRILAAIGELAKSIGTEGLVAGQVADIACTGNPNVGLD 82
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L GAILGGG+ EE+EK R
Sbjct: 83 TLEFIHIHKTAALLEASVVLGAILGGGTGEEVEKLRR 119
>gi|9971808|gb|AAG10424.1| GGDP synthase [Tagetes erecta]
Length = 361
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DAML F E +A++ G +S RILR + E+ + +GS+G+V GQ ++ CS+ ++ E
Sbjct: 181 DAMLSFAFEHMATATK--GVSSDRILRAIGELAKCIGSEGLVAGQVVDI-CSEGADVGLE 237
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGGS EIEK
Sbjct: 238 HLEFIHLHKTAALLEGSVVLGAILGGGSDGEIEK 271
>gi|121145|sp|P80042.1|GGPPS_CAPAN RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic;
Short=GGPP synthase; Short=GGPS; AltName:
Full=(2E,6E)-farnesyl diphosphate synthase; AltName:
Full=Dimethylallyltranstransferase; AltName:
Full=Farnesyl diphosphate synthase; AltName:
Full=Farnesyltranstransferase; AltName:
Full=Geranyltranstransferase; Flags: Precursor
gi|643094|emb|CAA56554.1| geranylgeranyl diphosphate synthase [Capsicum annuum]
Length = 369
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L F E + +S AG RI+ + E+ +++G++G+V GQ +++C+ ++
Sbjct: 187 GDSLLAFAFEHIVNST--AGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSL 244
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + L GAILGGG+ E+EK R
Sbjct: 245 ETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRR 282
>gi|426322797|gb|AFY26193.1| geranylgeranyl diphosphate synthase [Picrorhiza kurrooa]
Length = 354
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML E +A+S G S RI+RV+ E+ + +G +G+V GQ ++ ++
Sbjct: 172 GDAMLALSFEHVATSTK--GVPSERIIRVIYELAKCIGCEGLVAGQVVDISSEGMTQVGL 229
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GA+LGGGS EE+EK
Sbjct: 230 EHLEFIHSNKTAALLEGSVVLGALLGGGSDEEVEK 264
>gi|12231186|dbj|BAB20977.1| putative GGPP synthase [Lactuca indica var. laciniata]
Length = 126
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A++ G +S RILR + E+ + +GS+G+V GQ ++ CS+ ++ +
Sbjct: 25 DALLSFSFEHIATA--TKGVSSDRILRAIGELAKCIGSEGLVAGQVVDV-CSEGADVGLD 81
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAI+GGGS EEIEK
Sbjct: 82 HLEFIHLHKTAALLEGSVVLGAIMGGGSDEEIEK 115
>gi|77176929|gb|ABA64563.1| geranylgeranyl pyrophosphate synthase [Carica papaya]
Length = 214
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY-----V 57
DA+L F E LA + G + RI+R + E+ +++G++G+V GQ ++ CS+ +
Sbjct: 42 DALLSFSFEHLAVA--TVGVDPSRIVRAIKELAKSIGTEGLVAGQVVDI-CSEGMTDVGL 98
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKIT 102
E + L GAILGGG+ EEIEK ++ GL+ ++
Sbjct: 99 EHLEFIHVHKTAALLEAAVVLGAILGGGTDEEIEKLRKFARYIGLLFQVV 148
>gi|302816429|ref|XP_002989893.1| hypothetical protein SELMODRAFT_235899 [Selaginella moellendorffii]
gi|300142204|gb|EFJ08906.1| hypothetical protein SELMODRAFT_235899 [Selaginella moellendorffii]
Length = 366
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML E +A AG + R++R++ E+ A+GSQG+V GQ ++ C +
Sbjct: 184 GDAMLSLAFEHIARCS--AGVPAERVVRIVSELGSAVGSQGLVAGQIVDIACEGKEGVDL 241
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEI 90
+T + G L CGAI GG S EE+
Sbjct: 242 DTLRYIHIHKTGKLLEAAGVCGAIAGGASEEEV 274
>gi|308080718|ref|NP_001183942.1| putative geranylgeranyl pyrophosphate synthase 4 [Zea mays]
gi|148535925|gb|ABQ85649.1| putative geranylgeranyl pyrophosphate synthase 4 [Zea mays]
gi|413938171|gb|AFW72722.1| putative geranylgeranyl pyrophosphate synthase 4 [Zea mays]
Length = 343
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P +++ + +P +LRV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 158 GDALFPLAYTHVISHTPSPDPVPHAVLLRVLAELARAVGSTGMAAGQFLDLAGATALGEA 217
Query: 59 MTYETYKKNEGGLHTCGAACGAILGG-GSVEEIEKKFRGLIIKI 101
+ K G + C AACGA+LGG G EE E + G I +
Sbjct: 218 EVMQVLTKKFGEMAECSAACGAMLGGAGPDEEAELRRYGRTIGV 261
>gi|428222583|ref|YP_007106753.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 7502]
gi|427995923|gb|AFY74618.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 7502]
Length = 313
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E +A DN S RILRV+ + RA+ ++G+V GQ +L+ + T E
Sbjct: 133 DALLAYAFEFIA--DNTQNVPSDRILRVVSRLGRAVAAEGLVGGQVVDLESEGKPDTTLE 190
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T ++ L G IL G E+I++
Sbjct: 191 TLNFIHRHKTAALLEASVVSGGILAGADTEDIKR 224
>gi|13383243|dbj|BAB39472.1| putative GGPP synthase 1 [Metaplexis japonica]
Length = 127
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F E +A++ AG R+L + E+ +++G++G+V GQ +L C+ + +
Sbjct: 25 DSLLAFAFEYIATA--TAGVEPARVLAAIGELAKSIGTEGLVAGQVVDLSCTGKSNVGLD 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ L GAILGGG+ EE+EK R
Sbjct: 83 QLEFIHIHKTAALLEASVVLGAILGGGTQEEVEKLRR 119
>gi|357483275|ref|XP_003611924.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
gi|355513259|gb|AES94882.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
Length = 371
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S G RI+R + E+ +A+G +G+V GQ +L+ +
Sbjct: 189 GDALLSFAFEHVAVST--IGVPPERIVRAIAELAKAVGKEGLVAGQIVDLESEGKSNVGL 246
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
ET + + L GAI+GGG+ +EIEK ++ GL+ ++
Sbjct: 247 ETLEFIHLRKTAALLEAAVVMGAIVGGGTEDEIEKLRKFARYIGLLFQV 295
>gi|297832526|ref|XP_002884145.1| geranylgeranyl diphosphate synthase [Arabidopsis lyrata subsp.
lyrata]
gi|297329985|gb|EFH60404.1| geranylgeranyl diphosphate synthase [Arabidopsis lyrata subsp.
lyrata]
Length = 329
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 23/104 (22%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E LA+ + P + R++R + E+ +A+GS+G+V G Q V++T E
Sbjct: 145 DALLSFAFEHLAT-ETPEIISPARVVRAIGELAKAIGSEGLVAG--------QVVDLTSE 195
Query: 63 TYKKNEGGLHT--------------CGAACGAILGGGSVEEIEK 92
+N+ GL GAI GGG+ EEIE+
Sbjct: 196 GMDQNDVGLELLEFIHLHKTAVLLEAATVLGAIFGGGTNEEIER 239
>gi|262411038|gb|ACY66885.1| geranyl geranyl pyrophosphate synthase [Linum usitatissimum]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A S G + +I+R + E+ +++GS+G+V GQ ++ + E
Sbjct: 40 DALLAFAFEHMAVS--TVGVPAAKIVRAIGELAKSIGSEGLVAGQVVDIDSEGLANVGLE 97
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ G L GAILGGG+ EE+EK
Sbjct: 98 QLEFIHLHKTGALLEASVVLGAILGGGTDEEVEK 131
>gi|58201026|gb|AAW66658.1| geranyl diphosphate synthase [Picrorhiza kurrooa]
Length = 371
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML F E +AS G S RI+RV+ E+ + +G +G+V GQ ++ E+
Sbjct: 189 GDAMLAFSFEHVASLTK--GVCSERIVRVIYELAKCVGCEGLVAGQVVDICSEGMDEVGL 246
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGGS EE+EK
Sbjct: 247 EHLEFIHLNKTAALLEGSVVLGAILGGGSDEEVEK 281
>gi|157965847|gb|ABW06960.1| geranylgeranyl diphosphate synthase [Corylus avellana]
Length = 373
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-----Y 56
DA+L F E +A S G RILR + E+ R++G++G+V GQ ++ CS+
Sbjct: 191 GDALLAFSFEHIAVSTE--GVPPARILRAIGELARSIGAEGLVAGQVVDI-CSEGLSDVG 247
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
+E + L GAILGGGS EE+EK ++ GL+ ++
Sbjct: 248 LEHLEFIHLHKTAALLEGAVVLGAILGGGSNEEVEKLRNFARYIGLLFQV 297
>gi|168203183|gb|ACA21462.1| geranylgeranyl diphosphate synthase 6 [Picea abies]
Length = 385
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----VE 58
DA+L F E +A S G + ++LRV+ E+ RA+GS+G+V GQ +L ++
Sbjct: 204 DALLAFAFEHIACSTK--GVEAEKVLRVIWELGRAIGSEGLVAGQVVDLSSGGLSNVGLD 261
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ + L GAI+GGGS EEIE+ R
Sbjct: 262 LLEYIHVHKTAALLEGSVVIGAIIGGGSDEEIERLRR 298
>gi|147776976|emb|CAN70079.1| hypothetical protein VITISV_001037 [Vitis vinifera]
Length = 341
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYV 57
DA+ P G + S G+++RV+ E+ R++GS G+ GQ+ +L+ + +V
Sbjct: 160 GDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFV 219
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMIR 107
+ +K G + C A CG LGG + ++I + R G++ ++ M++
Sbjct: 220 Q------RKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVVDDMLK 268
>gi|22535957|gb|AAN01133.1| geranyl diphosphate synthase [Abies grandis]
Length = 383
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S S R+LRV+ E+ +A+GSQGV GQ ++ +
Sbjct: 200 GDALLSFAFEHIAVSTRKT-VASHRVLRVVSELGKAIGSQGVAGGQVADITSEGDPSVGL 258
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + L C GAI+GG S EIE+ R
Sbjct: 259 ETLEWIHIHKTAVLLECAVVSGAIIGGASENEIERTGR 296
>gi|297744549|emb|CBI37811.3| unnamed protein product [Vitis vinifera]
Length = 1187
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYV 57
DA+ P G + S G+++RV+ E+ R++GS G+ GQ+ +L+ + +V
Sbjct: 417 GDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFV 476
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ +K G + C A CG LGG + ++I
Sbjct: 477 Q------RKKFGEMAECSAVCGGFLGGAADDDI 503
>gi|374993734|ref|YP_004969233.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus orientis
DSM 765]
gi|357212100|gb|AET66718.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus orientis
DSM 765]
Length = 288
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY- 61
DA+L + ELL + D+ R+LRV+ E+ A G G+V GQ +L + ++T
Sbjct: 110 DALLTYAFELLGNLDHA---QPERLLRVITEVAMAAGKDGMVGGQVLDL-AGEGRDLTLN 165
Query: 62 ---ETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G + T A G ILGGGS +EI+
Sbjct: 166 EIEEIHKAKTGAILTVSARLGGILGGGSEDEID 198
>gi|359474991|ref|XP_003631563.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
chloroplastic-like isoform 1 [Vitis vinifera]
Length = 341
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYV 57
DA+ P G + S G+++RV+ E+ R++GS G+ GQ+ +L+ + +V
Sbjct: 160 GDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFV 219
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ +K G + C A CG LGG + ++I
Sbjct: 220 Q------RKKFGEMAECSAVCGGFLGGAADDDI 246
>gi|359474993|ref|XP_003631564.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
chloroplastic-like isoform 2 [Vitis vinifera]
Length = 341
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYV 57
DA+ P G + S G+++RV+ E+ R++GS G+ GQ+ +L+ + +V
Sbjct: 160 GDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEGAPNSVDFV 219
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ +K G + C A CG LGG + ++I
Sbjct: 220 Q------RKKFGEMAECSAVCGGFLGGAADDDI 246
>gi|224103129|ref|XP_002312936.1| predicted protein [Populus trichocarpa]
gi|222849344|gb|EEE86891.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ-CSQYVEMTY 61
DA+ P G + S R+L V+ E+ RA+GS G+ GQ+ +L+ VE
Sbjct: 132 DALFPLGFRHIVSHTPSDLVPEPRLLSVIAEIARAVGSTGMAAGQFLDLEGGPNSVEFVQ 191
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
E K G + C A CG +L G +EI++ R
Sbjct: 192 E---KKFGEMGECSAVCGGLLAGAKDDEIQRLRR 222
>gi|388496908|gb|AFK36520.1| unknown [Medicago truncatula]
Length = 342
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+ P G + + S R+LRV+ E+ R +GS G+ GQ+ +L+
Sbjct: 160 GDALFPLGFQHIVSHTPSDLVPEPRVLRVIAEIARCVGSTGMAAGQFLDLKGGPNAVGLI 219
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ K G + C A CG +L G +EIE+ R
Sbjct: 220 Q--DKKFGEMAECSAVCGGLLAGAEDDEIERLRR 251
>gi|126030919|pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba
Length = 268
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ ++ + +
Sbjct: 105 DALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISNVGLEHLKFI 163
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
K L A G I+GGGS EEIE+
Sbjct: 164 HLHKT-AALLEASAVLGGIIGGGSDEEIER 192
>gi|302770449|ref|XP_002968643.1| hypothetical protein SELMODRAFT_231193 [Selaginella moellendorffii]
gi|300163148|gb|EFJ29759.1| hypothetical protein SELMODRAFT_231193 [Selaginella moellendorffii]
Length = 327
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----VE 58
DAML E +A AG + R++R++ E+ A+GSQG+V GQ ++ C ++
Sbjct: 146 DAMLSLAFEHIARCS--AGVPAERVVRIVSELGSAVGSQGLVAGQIVDIACEGKEGVDLD 203
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
M + G L CGAI GG S EE+
Sbjct: 204 MLRYIHIHKTGKLLEAAGVCGAIAGGASEEEV 235
>gi|79154639|gb|ABB52066.1| putative geranylgeranyl pyrophosphate synthase [Daucus carota
subsp. sativus]
Length = 367
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L E +A + + GR++R + E+ A+GSQG+V GQ ++ C+Q ++
Sbjct: 185 GDALLSLAFEHVADATDMV--TPGRVVRAIAELGSAVGSQGLVAGQIMDI-CNQGKDVDL 241
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L CGAILGGG+V E+E+
Sbjct: 242 NDLEYIHVHKTSKLLEASVVCGAILGGGNVIEVER 276
>gi|12862619|dbj|BAB32548.1| putative GGPP synthase [Lactuca indica var. laciniata]
Length = 205
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E + ++ G +S RILR + E+ + +GS+G+V GQ ++ CS+ ++ +
Sbjct: 25 DALLSFSFEHITTA--TKGVSSDRILRAIGELAKCIGSEGLVAGQVVDV-CSEGADVGLD 81
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAI+GGGS EEIEK
Sbjct: 82 HLEFIHLHKTAALLEGSVVLGAIMGGGSDEEIEK 115
>gi|46241274|gb|AAS82860.1| geranyl diphosphate synthase large subunit [Antirrhinum majus]
Length = 372
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S G +S RI+RV+ E+ + +GS+G+V GQ ++ E+
Sbjct: 190 GDALLAFSFEHVAKSTK--GVSSDRIVRVIGELAKCIGSEGLVAGQVVDISSEGMTEVGL 247
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GG E++EK
Sbjct: 248 EHLEFIHVHKTAALLEASVVLGAIVGGADDEDVEK 282
>gi|79154586|gb|ABB52065.1| putative geranylgeranyl pyrophosphate synthase [Daucus carota
subsp. sativus]
Length = 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ------ 55
DAML L+A+ +G +S +++RV+VE+ +A+G++G+V GQ ++ CS+
Sbjct: 183 GDAMLALAFHLVATET--SGVSSSQVVRVIVELAKAIGAEGLVAGQIVDV-CSEGDPNLG 239
Query: 56 YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
++ + ++ L GAILGG + EE+EK
Sbjct: 240 LKDLEF-IHRSKTAALLEGSVVMGAILGGANDEEVEK 275
>gi|427706110|ref|YP_007048487.1| farnesyl-diphosphate synthase [Nostoc sp. PCC 7107]
gi|427358615|gb|AFY41337.1| farnesyl-diphosphate synthase [Nostoc sp. PCC 7107]
Length = 309
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L F EL+A+ P ++L+V+ + RA+G+ G+V GQ +L+ +++ E
Sbjct: 128 DGLLAFAFELVATQ-TPENVPRDKVLQVIARLGRALGAAGLVGGQVVDLESEGKSDISLE 186
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG IL G S E++++ R
Sbjct: 187 TLNFIHNHKTAALLEAC-VVCGGILAGASSEDVQRLTR 223
>gi|22535961|gb|AAN01135.1| geranyl diphosphate synthase [Abies grandis]
Length = 387
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+ F E + + + + + G ILR + E+ RA G QG++ GQ ++ + +
Sbjct: 204 GDALHAFAFEHIVAFTSKSVGSDG-ILRAVTELARATGPQGIMGGQIVDIASERDAFVDL 262
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
+T + L C CGAI+GG S +EIE+ ++ GL+ ++
Sbjct: 263 QTLEWIHIHKTAVLFECATVCGAIIGGASGDEIERIRRFARYLGLLFQV 311
>gi|159490409|ref|XP_001703169.1| geranylgeranyl diphosphate synthase [Chlamydomonas reinhardtii]
gi|158270709|gb|EDO96545.1| geranylgeranyl diphosphate synthase [Chlamydomonas reinhardtii]
Length = 345
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+L F E +A + G + R+LRV++E+ +A+G G+V GQ ++Q ++
Sbjct: 164 GDALLSFSFEHIARATK--GVPAERVLRVIMELGKAVGQDGLVAGQVVDIQSEDKEVGLD 221
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ ++ L CGAILGG IEK
Sbjct: 222 VLKYIHEHKTAALLEASVVCGAILGGADESTIEK 255
>gi|297599729|ref|NP_001047684.2| Os02g0668100 [Oryza sativa Japonica Group]
gi|255671156|dbj|BAF09598.2| Os02g0668100, partial [Oryza sativa Japonica Group]
Length = 349
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P ++A + +P +LRV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 164 GDALFPLAYTHVIAHTPSPDPVPHAVLLRVLGELARAVGSTGMAAGQFLDLAGATALGEA 223
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 224 EVMKVLTKKFGEMAECSAACGAMLGGAGPDE 254
>gi|10801556|dbj|BAB16691.1| GGPP synthase 1 [Hevea brasiliensis]
Length = 127
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ ++ E+ E
Sbjct: 25 DALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLE 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGG+ EE+EK
Sbjct: 83 KLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 116
>gi|302843854|ref|XP_002953468.1| hypothetical protein VOLCADRAFT_109214 [Volvox carteri f.
nagariensis]
gi|300261227|gb|EFJ45441.1| hypothetical protein VOLCADRAFT_109214 [Volvox carteri f.
nagariensis]
Length = 312
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E +A + G ++ R+LRV++E+ RA G++G+V GQ ++Q S+ E+ +
Sbjct: 132 DALLTYAFEHIARATK--GVSAERVLRVIMELGRATGAEGLVAGQVVDIQ-SEDKEVGLD 188
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
K L CGAI+GG IEK
Sbjct: 189 VLKYIHLHKTAALLEASVVCGAIVGGADEATIEK 222
>gi|56750769|ref|YP_171470.1| geranylgeranyl pyrophosphate synthase [Synechococcus elongatus PCC
6301]
gi|81299587|ref|YP_399795.1| farnesyl-diphosphate synthase [Synechococcus elongatus PCC 7942]
gi|56685728|dbj|BAD78950.1| geranylgeranyl pyrophosphate synthase [Synechococcus elongatus PCC
6301]
gi|81168468|gb|ABB56808.1| farnesyl-diphosphate synthase [Synechococcus elongatus PCC 7942]
Length = 301
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
DA+L + E +A + + PA R+L+V+ + RA+G++G+V GQ +LQ ++
Sbjct: 121 DALLTYAFEAIARHTPEVPAD----RVLKVIAALARAVGAEGLVGGQVVDLQSEGRDDVN 176
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFRGLIIKI 101
ET + G L GAIL G S EE++++ R KI
Sbjct: 177 LETLHYIHTHKTGALLEVSVVSGAILAGAS-EELQEQLRTYAQKI 220
>gi|326505838|dbj|BAJ91158.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514464|dbj|BAJ96219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 342
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P +++ + +P + +LRV+ E+ R +GS G+ GQ+ +L + +
Sbjct: 157 GDALFPLAYTHVISRTPSPDPVSHAVLLRVLAELARTVGSTGMAAGQFLDLAGASALGEA 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 217 EVMQVLTKKFGEMAECSAACGAMLGGAGPDE 247
>gi|226510660|gb|ACO59905.1| geranylgeranyl pyrophosphate synthase [Elaeagnus umbellata]
Length = 365
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-----Y 56
DA+L F E +A S G ++ RI+R + E+ +++GS+G+V GQ ++ CS+
Sbjct: 183 GDALLAFAFEHIAVST--VGVSTARIVRSIGELAKSIGSEGLVAGQVVDI-CSEGLSDVG 239
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
+E + L GAILGGGS EIEK ++ GL+ ++
Sbjct: 240 LEQLEFIHVHKTAALLEASVVLGAILGGGSDIEIEKLRMFARYIGLLFQV 289
>gi|75250205|sp|Q94ID7.1|GGPPS_HEVBR RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic;
Short=GGPP synthase; Short=GGPS; AltName:
Full=(2E,6E)-farnesyl diphosphate synthase; AltName:
Full=Dimethylallyltranstransferase; AltName:
Full=Farnesyl diphosphate synthase; AltName:
Full=Farnesyltranstransferase; AltName:
Full=Geranyltranstransferase; Flags: Precursor
gi|14325238|dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasiliensis]
Length = 370
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ ++ E+
Sbjct: 188 GDALLAFAFEHIAVST--LNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDL 245
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ EE+EK
Sbjct: 246 EKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 280
>gi|297802274|ref|XP_002869021.1| hypothetical protein ARALYDRAFT_490952 [Arabidopsis lyrata subsp.
lyrata]
gi|297314857|gb|EFH45280.1| hypothetical protein ARALYDRAFT_490952 [Arabidopsis lyrata subsp.
lyrata]
Length = 379
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++
Sbjct: 193 GDALLSFAFEHLASATSSDVVSPVRVVRAIGELAKAIGTEGLVAG--------QVVDISS 244
Query: 62 ETYKKNEGGLH--------------TCGAACGAILGGGSVEEIEK 92
E N+ GL A GAI+GGGS +EIE+
Sbjct: 245 EGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIER 289
>gi|50252136|dbj|BAD28132.1| putative geranylgeranyl diphosphate synthase [Oryza sativa Japonica
Group]
gi|215713481|dbj|BAG94618.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740753|dbj|BAG97409.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767016|dbj|BAG99244.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 342
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P ++A + +P +LRV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 157 GDALFPLAYTHVIAHTPSPDPVPHAVLLRVLGELARAVGSTGMAAGQFLDLAGATALGEA 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 217 EVMKVLTKKFGEMAECSAACGAMLGGAGPDE 247
>gi|125540612|gb|EAY87007.1| hypothetical protein OsI_08402 [Oryza sativa Indica Group]
Length = 344
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P ++A + +P +LRV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 159 GDALFPLAYTHVIAHTPSPDPVPHAVLLRVLGELARAVGSTGMAAGQFLDLAGATALGEA 218
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 219 EVMKVLTKKFGEMAECSAACGAMLGGAGPDE 249
>gi|20386366|gb|AAM21638.1|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus creticus]
Length = 364
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E + S G + RI+R + E+ +++GS+G+V GQ ++ ++
Sbjct: 182 GDALLAFSFEHMTGST--VGVSPARIVRAVGELAKSIGSEGLVAGQVVDICSEGLTDVGL 239
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGGS EE+EK
Sbjct: 240 EHLEFIHVHKTAALLEGSVVLGAILGGGSDEEVEK 274
>gi|358343453|ref|XP_003635816.1| hypothetical protein MTR_011s1001, partial [Medicago truncatula]
gi|355501751|gb|AES82954.1| hypothetical protein MTR_011s1001, partial [Medicago truncatula]
Length = 277
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P G + + S R+LRV+ E+ R +GS G+ GQ+ +L+ +
Sbjct: 96 DALFPLGFQHIVSHTPSDLVPEPRVLRVIAEIARCVGSTGMAAGQFLDLKGGPNAVGLIQ 155
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
K G + C A CG +L G +EIE+ R
Sbjct: 156 --DKKFGEMAECSAVCGGLLAGAEDDEIERLRR 186
>gi|224285135|gb|ACN40295.1| unknown [Picea sitchensis]
Length = 382
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 4 AMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
A+L E +A S+ GN+ RILR++ E+ R GSQG++ GQ+ +L + +
Sbjct: 201 ALLSVAFEHIAVSTSKTVGND--RILRMVSELGRTTGSQGIMGGQFLDLVSEGDASVNLQ 258
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CGAI+GG S +EIE+ R
Sbjct: 259 TLQWIHAHKTAVLLESSVVCGAIIGGASEDEIERIRR 295
>gi|15234534|ref|NP_195399.1| geranylgeranyl pyrophosphate synthase 11 [Arabidopsis thaliana]
gi|13432144|sp|P34802.2|GGPP1_ARATH RecName: Full=Heterodimeric geranylgeranyl pyrophosphate synthase
large subunit 1, chloroplastic; Short=GGPP synthase 1;
Short=GGPS1; AltName: Full=(2E,6E)-farnesyl diphosphate
synthase 1; AltName: Full=Dimethylallyltranstransferase
1; AltName: Full=Farnesyl diphosphate synthase 1;
AltName: Full=Farnesyltranstransferase 1; AltName:
Full=Geranyltranstransferase 1; Flags: Precursor
gi|2464899|emb|CAB16803.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|7270630|emb|CAB80347.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|110742524|dbj|BAE99179.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|332661305|gb|AEE86705.1| geranylgeranyl pyrophosphate synthase 11 [Arabidopsis thaliana]
Length = 371
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++
Sbjct: 185 GDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAG--------QVVDISS 236
Query: 62 ETYKKNEGGLH--------------TCGAACGAILGGGSVEEIEK 92
E N+ GL A GAI+GGGS +EIE+
Sbjct: 237 EGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIER 281
>gi|125583193|gb|EAZ24124.1| hypothetical protein OsJ_07863 [Oryza sativa Japonica Group]
Length = 342
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P ++A + +P +LRV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 157 GDALFPLAYTHVIAQNPSPEPVPHAVLLRVLGELARAVGSTGMAAGQFLDLAGATALGEA 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 217 EVMKVLTKKFGEMAECSAACGAMLGGAGPDE 247
>gi|164605012|dbj|BAF98302.1| geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
Length = 370
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ ++ E+
Sbjct: 188 GDALLAFAFEHIAVST--LNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDL 245
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ EE+EK
Sbjct: 246 EKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 280
>gi|12231184|dbj|BAB20976.1| putative GGPP synthase [Sonchus oleraceus]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A G +S RILR + E+ + +GS+G+V GQ ++ CS+ ++ +
Sbjct: 25 DALLSFSFEHIAYM-ATKGVSSDRILRAIGELAKCIGSEGLVAGQVVDI-CSEGADVGLD 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAI+GGGS EEIEK
Sbjct: 83 HLEFIHLHKTAALLEGSVVLGAIMGGGSDEEIEK 116
>gi|225430848|ref|XP_002273789.1| PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic
[Vitis vinifera]
Length = 368
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G G I+R + E+ +++GS+G+V GQ ++ CS+ +
Sbjct: 186 GDALLAFAFEHMATAT--VGVPPGWIVRAVGELAKSIGSEGLVAGQVVDI-CSEGLKDVG 242
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGGS EEIEK
Sbjct: 243 LEHLEYIHVHKTAALLEGAVVLGAILGGGSNEEIEK 278
>gi|4958920|dbj|BAA78047.1| GGPP synthase [Daucus carota]
Length = 367
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E +A + + GR++R + E+ A+GSQG+V GQ ++ C+Q ++
Sbjct: 186 DALLSLAFEHVADATDMV--TPGRVVRAIAELGSAVGSQGLVAGQIMDI-CNQGKDVDLN 242
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L CGAILGGG+V E+E+
Sbjct: 243 DLEYIHVHKTSKLLEASVVCGAILGGGNVIEVER 276
>gi|15224197|ref|NP_179452.1| geranylgeranyl diphosphate synthase 7 [Arabidopsis thaliana]
gi|75268021|sp|Q9ZU77.1|GGPP7_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase 7,
chloroplastic; Short=GGPP synthase 7; Short=GGPS7;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 7;
AltName: Full=Dimethylallyltranstransferase 7; AltName:
Full=Farnesyl diphosphate synthase 7; AltName:
Full=Farnesyltranstransferase 7; AltName:
Full=Geranyltranstransferase 7; Flags: Precursor
gi|4217998|gb|AAD12206.1| putative geranylgeranyl pyrophosphate synthase [Arabidopsis
thaliana]
gi|91806194|gb|ABE65825.1| geranylgeranyl pyrophosphate synthase/GGPP
synthetase/farnesyltranstransferase [Arabidopsis
thaliana]
gi|330251692|gb|AEC06786.1| geranylgeranyl diphosphate synthase 7 [Arabidopsis thaliana]
Length = 347
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA++ F E LA+S + R++R + E+ +A+GS+G+V G Q V++T
Sbjct: 164 GDALISFAFEHLATS---TAVSPARVVRAIGELAKAIGSKGLVAG--------QVVDLTS 212
Query: 62 ETYKKNEGGLHT--------------CGAACGAILGGGSVEEIEKKFR 95
+N+ GL GAI+GGGS EE+EK R
Sbjct: 213 GGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRR 260
>gi|413730|gb|AAA32797.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 371
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++
Sbjct: 185 GDALLSFSFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAG--------QVVDISS 236
Query: 62 ETYKKNEGGLH--------------TCGAACGAILGGGSVEEIEK 92
E N+ GL A GAI+GGGS +EIE+
Sbjct: 237 EGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIER 281
>gi|427730885|ref|YP_007077122.1| geranylgeranyl pyrophosphate synthase [Nostoc sp. PCC 7524]
gi|427366804|gb|AFY49525.1| geranylgeranyl pyrophosphate synthase [Nostoc sp. PCC 7524]
Length = 309
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + EL+A+ P R+L+V+ + RA+G+ G+V GQ +L +++ E
Sbjct: 128 DGLLAYAFELVATQ-TPESVTRERVLQVIARLGRALGAAGLVGGQVVDLDSEGKSDISLE 186
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG IL G S E++++ R
Sbjct: 187 TLNFIHNHKTAALLEAC-VVCGGILAGASSEDVQRLSR 223
>gi|116831085|gb|ABK28497.1| unknown [Arabidopsis thaliana]
Length = 348
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA++ F E LA+S + R++R + E+ +A+GS+G+V G Q V++T
Sbjct: 164 GDALISFAFEHLATS---TAVSPARVVRAIGELAKAIGSKGLVAG--------QVVDLTS 212
Query: 62 ETYKKNEGGLHT--------------CGAACGAILGGGSVEEIEKKFR 95
+N+ GL GAI+GGGS EE+EK R
Sbjct: 213 GGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRR 260
>gi|186683902|ref|YP_001867098.1| polyprenyl synthetase [Nostoc punctiforme PCC 73102]
gi|186466354|gb|ACC82155.1| Polyprenyl synthetase [Nostoc punctiforme PCC 73102]
Length = 310
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L EL+A PA N L+V+V + RA+G+ G+V GQ +L+C +++ E
Sbjct: 129 DGLLALAFELVALK-TPANVNRELTLQVIVRLGRALGAAGLVGGQVVDLECEGKSDISLE 187
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T ++ L G I+ G S E++++ R
Sbjct: 188 TLNFIHRHKTSALLEACVVSGGIIAGASTEDVQRLTR 224
>gi|13383251|dbj|BAB39476.1| putative GGPP synthase 1 [Youngia japonica]
Length = 126
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE--LQCSQYVEMT 60
DA+L F E LA++ G +S RILR + E+ + +GS+G+V GQ + + +
Sbjct: 25 DALLSFSFEHLATATK--GVSSDRILRAIGELAKCIGSEGLVAGQVVDICSRRRRCRIRP 82
Query: 61 YETYK-KNEGGLHTCGAACGAILGGGSVEEIEK 92
+ Y + L GAI+GGGS EEIEK
Sbjct: 83 FGVYPFTQDAALLEGSVVLGAIMGGGSDEEIEK 115
>gi|307950755|gb|ACA21458.2| geranyl diphosphate synthase 2 [Picea abies]
Length = 386
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 2 ADAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
DA+L E +A S+ G + ILR++ E+ RA GS+GV+ GQ +++ +
Sbjct: 203 GDALLSLAFEHVAVSTSRTLGTDI--ILRLLSEIGRATGSEGVMGGQVVDIESEGDPSID 260
Query: 61 YETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + L C CGAI+GG S ++IE+ R
Sbjct: 261 LETLEWVHIHKTAVLLECSVVCGAIMGGASEDDIERARR 299
>gi|449461425|ref|XP_004148442.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Cucumis sativus]
gi|449514740|ref|XP_004164466.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Cucumis sativus]
Length = 363
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A S G + RI+R + E+ +++G++G+V GQ ++ + E
Sbjct: 182 DALLAFAFEHIAVST--IGVSPPRIVRAIGELAKSIGAEGLVAGQVVDINSEGAADAGLE 239
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKIT 102
+ L GAILGGGS E++EK ++ GL+ ++
Sbjct: 240 QLEYIHLHKTAALLEAAVVLGAILGGGSNEDVEKLRNFARYIGLLFQVV 288
>gi|14422402|dbj|BAB60820.1| putative GGPP synthase [Eucommia ulmoides]
Length = 288
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-----YV 57
D++L F EL+A+S G + RI+RV+ E+ +++GS+G+V GQ ++ CS+ +
Sbjct: 107 DSLLAFAFELIATSTT--GVPADRIVRVIGELAKSIGSEGLVAGQVIDI-CSEGMTDVGL 163
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGG + E+EK
Sbjct: 164 EHLEFIHVHKTAALLEGSVVLGAILGGATDPEVEK 198
>gi|10801552|dbj|BAB16689.1| GGPP synthase [Eucommia ulmoides]
Length = 127
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-----YV 57
D++L F EL+A+S G + RI+RV+ E+ +++GS+G+V GQ ++ CS+ +
Sbjct: 25 DSLLAFAFELIATSTT--GVPADRIVRVIGELAKSIGSEGLVAGQVIDI-CSEGMTDVGL 81
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGG + E+EK
Sbjct: 82 EHLEFIHVHKTAALLEGSVVLGAILGGATDPEVEK 116
>gi|449448558|ref|XP_004142033.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Cucumis sativus]
Length = 375
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----V 57
DA+L F E +A++ A + R++R + E+ +A G+ G+V GQ ++ +
Sbjct: 193 GDALLSFAFEHMAATK--AEVSPERVVRAIGELAKATGTGGLVAGQVVDIDSEGADDVGL 250
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E+ + L A GAI+GGGS EEIEK
Sbjct: 251 ELLEYIHVHKTAALLEAAAVMGAIVGGGSEEEIEK 285
>gi|147843373|emb|CAN78430.1| hypothetical protein VITISV_032031 [Vitis vinifera]
Length = 308
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----- 57
DA+L F E +A++ G G I+R + E+ +++GS+G+V GQ ++ CS+ +
Sbjct: 127 DALLAFAFEHMATAT--VGVPPGWIVRAVGELAKSIGSEGLVAGQVVDI-CSEGLKDVGL 183
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGGS EEIEK
Sbjct: 184 EHLEYIHVHKTAALLEGAVVLGAILGGGSNEEIEK 218
>gi|167999215|ref|XP_001752313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696708|gb|EDQ83046.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 288
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E +A + G + R+LRV+ + +A+GS+G+V GQ ++ + E
Sbjct: 107 DALLTYAFEHIAR--DTTGVPADRVLRVIAHLGKAVGSEGLVAGQIVDIASEGDPTVGLE 164
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + L CGAILGG S +EI +
Sbjct: 165 TLEYVHTHKTAVLLESSVVCGAILGGASEDEISR 198
>gi|262036860|dbj|BAI47571.1| geranylgeranyl pyrophosphate synthase [Ipomoea sp. Kenyan]
Length = 373
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G +S +I+RV+ E+ +++G++G+V GQ ++ CS+ +
Sbjct: 191 GDALLAFAFEHIATATK--GASSEKIVRVVGELAKSIGAEGLVAGQVVDI-CSEGISNVG 247
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ EEI K
Sbjct: 248 LEHLEFIHLHKTAALLEGSVVLGAILGGGTEEEIAK 283
>gi|428219684|ref|YP_007104149.1| farnesyl-diphosphate synthase [Pseudanabaena sp. PCC 7367]
gi|427991466|gb|AFY71721.1| farnesyl-diphosphate synthase [Pseudanabaena sp. PCC 7367]
Length = 311
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 3 DAMLPFGLELLAS-SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D +L + E +A + +P + ++LRV+ + A+ + G+V GQ +L+C + T
Sbjct: 128 DGLLAYAFEYIADRTPSPDHTTAKQVLRVIAHLGHAVAATGLVGGQVVDLECEGKTDTTA 187
Query: 62 ETY-----KKNEGGLHTCGAACGAILGGGSVEEIEK 92
ET K L C +CGAIL G + ++++
Sbjct: 188 ETLTFIHMHKTAALLEAC-VSCGAILAGATAIDLQR 222
>gi|13431547|sp|Q43133.1|GGPPS_SINAL RecName: Full=Geranylgeranyl pyrophosphate synthase,
chloroplastic/chromoplastic; Short=GGPP synthase;
Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate
synthase; AltName: Full=Dimethylallyltranstransferase;
AltName: Full=Farnesyl diphosphate synthase; AltName:
Full=Farnesyltranstransferase; AltName:
Full=Geranyltranstransferase; Flags: Precursor
gi|1419758|emb|CAA67330.1| geranylgeranyl pyrophosphate synthase [Sinapis alba]
Length = 366
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----- 56
DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ ++
Sbjct: 181 GDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNV 239
Query: 57 -VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+E + L A G I+GGGS EEIE+
Sbjct: 240 GLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIER 276
>gi|343469128|gb|AEM43805.1| geranylgeranyl diphosphate synthase [Castanea mollissima]
Length = 213
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----- 57
DA+L F E +A S G R++ + E+ R++G++G+V GQ ++ CS+ +
Sbjct: 41 DALLAFAFEHIAVS--TVGVPPARVIGAVGELARSIGTEGLVAGQVVDI-CSEGLSDVGL 97
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKITKMMI 106
E + L GAILGGGS EE+EK ++ GL+ ++ ++
Sbjct: 98 EHLEFIHLHKTAALLEAAVVLGAILGGGSHEEVEKLRNFARYIGLLFQVVDDIL 151
>gi|12862621|dbj|BAB32549.1| putative GGPP synthase 1 [Euphorbia tirucalli]
gi|14041811|dbj|BAB55456.1| putative GGPPsynthase [Euphorbia tirucalli]
Length = 127
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 3 DAMLPFGLELLASSD---NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEM 59
DA+L F E +A S +PA RI+R + E+ +A+G++G+V GQ ++ E+
Sbjct: 25 DALLAFAFEHIAVSTLNVSPA-----RIVRAIGELAKAIGAEGLVAGQVVDISSEGLSEV 79
Query: 60 TYE----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ E++EK
Sbjct: 80 DLERLEFIHIHKTAKLLEGAVVLGAILGGGTDEQVEK 116
>gi|413923398|gb|AFW63330.1| hypothetical protein ZEAMMB73_683286 [Zea mays]
Length = 342
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P +++ + P ++RV+ E+ RA+GS G+ GQ+ +L + +
Sbjct: 157 GDALFPLAYTHVISHTPCPDPVPHAVLMRVLAELARAVGSTGMAAGQFLDLAGATALGEA 216
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+LGG +E
Sbjct: 217 EVMQVLTKKFGEMAECSAACGAMLGGARPDE 247
>gi|357518399|ref|XP_003629488.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
gi|295322741|gb|ADG01842.1| geranylgeranyl-diphosphate synthase [Medicago truncatula]
gi|355523510|gb|AET03964.1| Geranylgeranyl pyrophosphate synthase [Medicago truncatula]
Length = 372
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 2 ADAMLPFGLELLASSD---NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE 58
DA+L F E +A S +PA RI+R + E+ +++GS+G+V GQ ++ +
Sbjct: 190 GDALLAFAFEHIAVSTVDVSPA-----RIVRAIGELAKSIGSEGLVAGQVVDINSEGLSD 244
Query: 59 MTYETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+ E + L GAILGGGS E++EK
Sbjct: 245 VGLERLEFIHLHKTAALLEGAVVLGAILGGGSDEDVEK 282
>gi|427717935|ref|YP_007065929.1| farnesyl-diphosphate synthase [Calothrix sp. PCC 7507]
gi|427350371|gb|AFY33095.1| farnesyl-diphosphate synthase [Calothrix sp. PCC 7507]
Length = 309
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L F E +A P R+L V+ + RA+G+ G+V GQ +L+ + + E
Sbjct: 128 DGLLAFAFEFVAKQ-TPQDVPRDRVLDVVARLGRALGAAGLVGGQVVDLESEGKSDTSLE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CG IL G S E++++ R
Sbjct: 187 TLNFIHNHKTAALLEASVVCGGILTGASSEDVQRLTR 223
>gi|296133204|ref|YP_003640451.1| polyprenyl synthetase [Thermincola potens JR]
gi|296031782|gb|ADG82550.1| Polyprenyl synthetase [Thermincola potens JR]
Length = 299
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E+L+S G + ++LRV+ E++ A GS+G++ GQ ++ S+ ++++ E
Sbjct: 118 DALLTLAFEVLSSLVEEPGIDPQKVLRVIKEISLAAGSRGLIGGQVVDI-GSENLDISAE 176
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIE-----KKFRGLIIKIT 102
T K G L GAIL S E+I F GL +IT
Sbjct: 177 TLKYIHIHKTGALFKAALKTGAILSSASEEQITALSRYAHFLGLGFQIT 225
>gi|219669510|ref|YP_002459945.1| polyprenyl synthetase [Desulfitobacterium hafniense DCB-2]
gi|219539770|gb|ACL21509.1| Polyprenyl synthetase [Desulfitobacterium hafniense DCB-2]
Length = 290
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLASSDNP-AGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ----YV 57
DA+L + ELLA P +G +S R LR + E+ +A G +G+V GQ +L+ +
Sbjct: 111 DALLTYAFELLA---QPMSGVDSQRQLRAVREVAQAAGPEGMVGGQMLDLEAEEKQLNLA 167
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E+ + ++ G + A GAIL GG+ E+IE
Sbjct: 168 ELE-QVHRLKTGAILVVAARLGAILAGGTEEKIE 200
>gi|225458370|ref|XP_002283364.1| PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic
[Vitis vinifera]
Length = 371
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L F E LA++ +G +S RI+ + E+ +++G++G+V GQ ++ + ++
Sbjct: 189 GDSLLAFAFEHLATAT--SGVSSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGL 246
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GA+LGGGS EE+EK
Sbjct: 247 DQLEFIHIHKTAALLEAAVVLGALLGGGSDEEVEK 281
>gi|434403680|ref|YP_007146565.1| geranylgeranyl pyrophosphate synthase [Cylindrospermum stagnale PCC
7417]
gi|428257935|gb|AFZ23885.1| geranylgeranyl pyrophosphate synthase [Cylindrospermum stagnale PCC
7417]
Length = 309
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L E A+ PA R+L+V+ + +A+G+ G+V GQ +L ++++ E
Sbjct: 128 DGLLALAFEFPATQ-TPANVPHERVLQVIARLGKALGAAGLVGGQVVDLDSEGKLDISLE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CG +L G S E+I++ R
Sbjct: 187 TLNFIHNHKTAALLEASVVCGGLLAGASSEDIQRLTR 223
>gi|449497746|ref|XP_004160506.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Cucumis sativus]
Length = 340
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----V 57
DA+L F E +A++ A + R++R + E+ +A G+ G+V GQ ++ +
Sbjct: 158 GDALLSFAFEHMAATK--AEVSPERVVRAIGELAKATGTGGLVAGQVVDIDSEGADDVGL 215
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E+ + L A GAI+GGGS EEIEK
Sbjct: 216 ELLEYIHVHKTAALLEAAAVMGAIVGGGSEEEIEK 250
>gi|428305626|ref|YP_007142451.1| polyprenyl synthetase [Crinalium epipsammum PCC 9333]
gi|428247161|gb|AFZ12941.1| Polyprenyl synthetase [Crinalium epipsammum PCC 9333]
Length = 312
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A + G + ++L+V+ +++ A+G+ G+V GQ +L+C + + E
Sbjct: 132 DGLLAYSFEYIAKATQ--GVPAEQVLQVIAQLSHAVGATGLVGGQVVDLECEGKSDTSVE 189
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGAIL S E ++K R
Sbjct: 190 TLTYIHTHKTGALLESCVVCGAILASASAEVLQKLSR 226
>gi|357136943|ref|XP_003570062.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
chloroplastic-like [Brachypodium distachyon]
Length = 346
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 2 ADAMLPFGL-ELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV--E 58
DA+ P +++ + +P + +LRV+ E+ R +GS G+ GQ+ +L + +
Sbjct: 161 GDALFPLAYTHVISRTPSPNPVSHAVLLRVLAELARTVGSTGMAAGQFLDLAGATALGER 220
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEE 89
+ K G + C AACGA+L G +E
Sbjct: 221 EVMQVLTKKFGEMAECSAACGAMLAGAGPDE 251
>gi|374579594|ref|ZP_09652688.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus youngiae
DSM 17734]
gi|374415676|gb|EHQ88111.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus youngiae
DSM 17734]
Length = 288
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 3 DAMLPFGLELLASSD--NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ---CSQYV 57
DA+L + ELLA SD P R LRV+ E+ A G +G+V GQ +L S +
Sbjct: 110 DALLTYAFELLADSDLGQPE-----RQLRVIREVAVAAGKEGMVGGQVADLAGEGKSLTL 164
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G L T A G IL GG+ ++++
Sbjct: 165 NEIEEIHKAKTGALLTVSARLGGILAGGTEDQVK 198
>gi|434386605|ref|YP_007097216.1| geranylgeranyl pyrophosphate synthase [Chamaesiphon minutus PCC
6605]
gi|428017595|gb|AFY93689.1| geranylgeranyl pyrophosphate synthase [Chamaesiphon minutus PCC
6605]
Length = 305
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G ++ R+L+ + + +A+G+ G+V GQ +L+ +++ E
Sbjct: 125 DGLLAYSFEYIATQTQ--GVSADRVLKAIAHLAKAVGANGLVGGQVVDLESEGKPDISVE 182
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + G L CGAIL G + ++EK
Sbjct: 183 TLTYIHNHKTGALLKACVVCGAILAGATEAQLEK 216
>gi|414076496|ref|YP_006995814.1| geranyltranstransferase [Anabaena sp. 90]
gi|413969912|gb|AFW94001.1| geranyltranstransferase [Anabaena sp. 90]
Length = 312
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L E +A+ P R+L+V++ + +A+G+ G+V GQ +L+ +++ E
Sbjct: 131 DGLLALAFEHVAAQ-TPTNVPRDRVLQVIIRLGKALGAAGLVGGQVVDLESEGKSDISLE 189
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG I+ G S E+++K R
Sbjct: 190 TLNFIHNHKTAALLEAC-VVCGGIIAGASAEDVQKLTR 226
>gi|374639381|gb|AEZ55679.1| geranyl diphosphate synthase small subunit type II.1 [Salvia
miltiorrhiza]
Length = 290
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP + + + +LRV+ E+ RA+GS G+ Q+
Sbjct: 151 DALLPLAFQYIVLHTPTQLVSQLHLLRVVQEIARAVGSTGMAATQF-------------- 196
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKITKMMI 106
+ G L C A CGA+LGG S EEIE+ + G++ ++ + M+
Sbjct: 197 IGENKFGELGRCSAVCGALLGGASDEEIERLGEYGRIVGILYRVVEDML 245
>gi|126030920|pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
gi|126030921|pdb|2J1P|B Chain B, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In
Complex With Ggpp
Length = 293
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------ 56
DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ ++
Sbjct: 123 DALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVG 181
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE--KKFR---GLIIKITKMMI 106
+E + L A G I+GGGS EEIE +KF GL+ ++ ++
Sbjct: 182 LEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDIL 236
>gi|410657101|ref|YP_006909472.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Dehalobacter
sp. DCA]
gi|410660137|ref|YP_006912508.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Dehalobacter
sp. CF]
gi|409019456|gb|AFV01487.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Dehalobacter
sp. DCA]
gi|409022493|gb|AFV04523.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Dehalobacter
sp. CF]
Length = 288
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ----YNELQCSQYVE 58
DA+L ELLA P+ + + LRV+ E +A G QG+V GQ L+ S +
Sbjct: 110 DALLTLAFELLA---GPSAIEAQKKLRVIRETAQAAGWQGMVGGQSLDTLGNLENSTLAD 166
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ + + G L A GAILGGGS EIE
Sbjct: 167 IE-QVHHLKTGALLKASARLGAILGGGSEPEIE 198
>gi|56122559|gb|AAV74397.1| geranylgeranyl diphosphate synthase [Adonis aestivalis var.
palaestina]
Length = 359
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYV 57
DA+L E +A+ G ++ R++RV+ E+ + +GS G+V GQ ++ + +
Sbjct: 178 GDALLSLAFEHVATRST--GVSADRVVRVIAELGKCVGSDGLVGGQIVDIASAGKQIELS 235
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKI 101
E+ Y K L CGAI+GGG +IE+ ++ GL+ ++
Sbjct: 236 ELEYIHLHKT-AILLEASVVCGAIMGGGMAPDIERLRKYARYIGLLFQV 283
>gi|443328518|ref|ZP_21057114.1| geranylgeranyl pyrophosphate synthase [Xenococcus sp. PCC 7305]
gi|442791817|gb|ELS01308.1| geranylgeranyl pyrophosphate synthase [Xenococcus sp. PCC 7305]
Length = 310
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
Query: 3 DAMLPFGLELLAS-SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D +L + E +A+ +DN A N I++V+ + +G++G+V GQ +L+ ++T
Sbjct: 130 DGLLAYAFEYVANKTDNVAPEN---IIKVIARLGNTVGAEGLVGGQVLDLESEGKTDITA 186
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFRGLIIKITK 103
ET + G L GAIL G S EE IIK+TK
Sbjct: 187 ETLSFIHTHKTGALLETSVVTGAILAGASAEE--------IIKLTK 224
>gi|11994221|dbj|BAB01343.1| geranyl geranyl pyrophosphate synthase-like protein [Arabidopsis
thaliana]
Length = 306
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 24 SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAA 77
S R++R +VE+ RA+G++G+V GQ +L + +E + L A
Sbjct: 142 SERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAAAV 201
Query: 78 CGAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 202 IGAIMGGGTEEEIEK 216
>gi|15231869|ref|NP_188069.1| geranylgeranyl diphosphate synthase, type II [Arabidopsis thaliana]
gi|332642012|gb|AEE75533.1| geranylgeranyl diphosphate synthase, type II [Arabidopsis thaliana]
Length = 284
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 24 SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAA 77
S R++R +VE+ RA+G++G+V GQ +L + +E + L A
Sbjct: 120 SERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAAAV 179
Query: 78 CGAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 180 IGAIMGGGTEEEIEK 194
>gi|443314084|ref|ZP_21043676.1| geranylgeranyl pyrophosphate synthase [Leptolyngbya sp. PCC 6406]
gi|442786319|gb|ELR96067.1| geranylgeranyl pyrophosphate synthase [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
DA+L + E +A ++D PA R+LRV+ ++ RA+G++G+V GQ +L +E+T
Sbjct: 126 DALLTYAFEHIARYTTDVPAD----RVLRVIADLGRAVGAEGLVGGQIVDLASEGDLEVT 181
Query: 61 YET----YKKNEGGLHTCGAACGAILGGG 85
+T + G L GAIL G
Sbjct: 182 VDTLNYIHVHKTGALLELSVTSGAILAGA 210
>gi|297836610|ref|XP_002886187.1| hypothetical protein ARALYDRAFT_900253 [Arabidopsis lyrata subsp.
lyrata]
gi|297332027|gb|EFH62446.1| hypothetical protein ARALYDRAFT_900253 [Arabidopsis lyrata subsp.
lyrata]
Length = 403
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-------QY 56
A+L E L +D +S +++RV+ E+ +++G++G+V GQ +L +
Sbjct: 223 ALLALAFEHLTEADV----SSKKMVRVVKELAKSIGTKGLVAGQAMDLSSEGLDPNDFRL 278
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
++ Y K G L A GA++GGGS EEIEK
Sbjct: 279 EDLEYIHVHKT-GALLEASAVIGAVIGGGSEEEIEK 313
>gi|194272413|gb|ACF37217.1| geranylgeranyl diphosphate synthase [Ipomoea batatas]
Length = 363
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G +S +I+RV+ E+ + +G++G+V GQ ++ CS+ +
Sbjct: 181 GDALLSFAFEHIATATK--GVSSEKIVRVIGELAKCIGAEGLVAGQVVDI-CSEGISDVG 237
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GA+LGGG+ EE+ K
Sbjct: 238 LEHLEFIHLHKTAALLEASVVLGAVLGGGTEEEVAK 273
>gi|313118274|sp|Q9LRR0.2|GGPP8_ARATH RecName: Full=Putative geranylgeranyl pyrophosphate synthase 8,
chloroplastic; Short=GGPP synthase 8; Short=GGPS8;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 8;
AltName: Full=Dimethylallyltranstransferase 8; AltName:
Full=Farnesyl diphosphate synthase 8; AltName:
Full=Farnesyltranstransferase 8; AltName:
Full=Geranyltranstransferase 8; Flags: Precursor
Length = 361
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 24 SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAA 77
S R++R +VE+ RA+G++G+V GQ +L + +E + L A
Sbjct: 197 SERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAAAV 256
Query: 78 CGAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 257 IGAIMGGGTEEEIEK 271
>gi|62959221|gb|AAY23718.1| farnesyl diphosphate synthase [Synechococcus elongatus CCMP1630]
Length = 145
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALPEVCVTAGAVLAGAKPEEVQ 122
>gi|4958918|dbj|BAA78046.1| GGPP synthase [Daucus carota]
Length = 366
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ-----Y 56
DAML L +++ G +S +++RV+VE+ +A+G++G+V GQ ++ CS+
Sbjct: 183 GDAMLALAAFHLVATET-RGVSSDQVVRVIVELAKAIGAEGLVAGQIVDV-CSEGDPNLG 240
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+E ++ L GAILGG + EE+EK
Sbjct: 241 LEDLEFIHRSKTAALLEGSVVMGAILGGANDEEVEK 276
>gi|62959237|gb|AAY23726.1| farnesyl diphosphate synthase [Bacillus sp. JL-537]
Length = 145
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVADLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|431794334|ref|YP_007221239.1| geranylgeranyl pyrophosphate synthase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784560|gb|AGA69843.1| geranylgeranyl pyrophosphate synthase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 289
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + ELLA S G R LRV+ E+ +A G +G+V GQ +L + E
Sbjct: 110 DALLTYAFELLAQS--ITGVTPERQLRVIREVAQAAGPEGMVGGQVLDLAAEEKDLALAE 167
Query: 63 ---TYKKNEGGLHTCGAACGAILGGGSVEEIE 91
++ G + A GAIL GG+ E+IE
Sbjct: 168 LERVHRLKTGAMLVVSARLGAILAGGTEEKIE 199
>gi|21593158|gb|AAM65107.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 371
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 22/105 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++
Sbjct: 185 GDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAG--------QVVDISS 236
Query: 62 ETYKKNEGGLH--------------TCGAACGAILGGGSVEEIEK 92
E N+ GL A AI+GGGS +EIE+
Sbjct: 237 EGLDLNDVGLEHLEFIHLHKTAALLEASAVLRAIVGGGSDDEIER 281
>gi|157692927|ref|YP_001487389.1| geranyltranstransferase [Bacillus pumilus SAFR-032]
gi|157681685|gb|ABV62829.1| geranyltranstransferase [Bacillus pumilus SAFR-032]
Length = 296
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ----YVE 58
DA+L L+ +S + ++ + LR++ E+ ++ G+ G+V GQ+++++ Q E
Sbjct: 116 DALLTESFRLI-TSQLSSSVSADKKLRIVDELVKSAGALGMVGGQFDDMEAEQKQVSLAE 174
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ Y + + G L T A GA+L G S ++IEK
Sbjct: 175 LEY-IHARKTGKLLTFSVAAGAMLAGASDDDIEK 207
>gi|297836608|ref|XP_002886186.1| hypothetical protein ARALYDRAFT_480767 [Arabidopsis lyrata subsp.
lyrata]
gi|297332026|gb|EFH62445.1| hypothetical protein ARALYDRAFT_480767 [Arabidopsis lyrata subsp.
lyrata]
Length = 372
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------V 57
A+L E L +D +S +++RV+ E+ +++G++G+V GQ +L +
Sbjct: 192 ALLALAFEHLTEADV----SSKKMVRVVKELAKSIGTKGLVAGQAMDLSSEGLDPNDVGL 247
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L A GA++GGGS EEIEK
Sbjct: 248 EDLEYIHVHKTGALLEASAVIGAVIGGGSEEEIEK 282
>gi|170077705|ref|YP_001734343.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 7002]
gi|169885374|gb|ACA99087.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 7002]
Length = 302
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ ++
Sbjct: 123 DALLSYAFEYVARTPDVPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVAV 178
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GAIL G EE++
Sbjct: 179 ETLNFIHTHKTGALLEVCVTAGAILAGAKPEEVQ 212
>gi|114566119|ref|YP_753273.1| polyprenyl synthetase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337054|gb|ABI67902.1| farnesyl-diphosphate synthase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 301
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L ELL+ ++ +G LRV+ E+ RA GS+G++ GQ +L+ + + YE
Sbjct: 120 DALLTAAFELLSEKNSVSGIKPDTTLRVIAEIARASGSRGMIGGQILDLEAEGKI-IDYE 178
Query: 63 TYKK----NEGGLHTCGAACGAILGG 84
+ +K G L GAI+GG
Sbjct: 179 SLRKLHCLKTGQLFRAALRTGAIVGG 204
>gi|75908916|ref|YP_323212.1| farnesyl-diphosphate synthase [Anabaena variabilis ATCC 29413]
gi|75702641|gb|ABA22317.1| farnesyl-diphosphate synthase [Anabaena variabilis ATCC 29413]
Length = 309
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A P R+L+V+ + RA+G+ G+V GQ +L +++ E
Sbjct: 128 DGLLAYAFEFVAIR-TPESVPRDRVLQVVARLGRALGAAGLVGGQVVDLDSEGKSDISLE 186
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG IL G S E++++ R
Sbjct: 187 TLNFIHNHKTAALLEAC-VVCGGILAGASSEDVQRLSR 223
>gi|148887803|gb|ABR15420.1| geranyl pyrophosphate synthase large subunit [Mentha canadensis]
Length = 377
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ G RI+RV+ E+ ++GS+G+V GQ ++ E+
Sbjct: 195 GDALLSFAFEHVAAATK--GAPPERIVRVLGELAVSVGSEGLVAGQVVDVCSEGMAEVGL 252
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGGG+ EE+ K
Sbjct: 253 DHLEFIHHHKTAALLQGSVVLGAILGGGNEEEVAK 287
>gi|62959211|gb|AAY23713.1| farnesyl diphosphate synthase [Synechococcus cf. elongatus
CCMP1379]
Length = 145
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDVPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|229915240|gb|ACQ90682.1| geranyl diphosphate synthase large subunit [Humulus lupulus]
Length = 369
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A S G + RI+R + E+ +++GS+G+V GQ ++ +
Sbjct: 187 GDALLAYAFEHVAVST--VGVPAARIIRAIGELAKSIGSEGLVAGQVVDIDSEGLANVGL 244
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ E++E+
Sbjct: 245 EQLEFIHLHKTAALLEASVVLGAILGGGTDEQVEE 279
>gi|62959239|gb|AAY23727.1| farnesyl diphosphate synthase [Nocardia sp. JL-538]
Length = 145
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|6449052|gb|AAF08793.1|AF182828_1 geranyl diphosphate synthase large subunit [Mentha x piperita]
gi|10637876|emb|CAC10561.1| gpp synthase large subunit [Mentha x piperita]
gi|158979013|gb|ABW86879.1| geranyl pyrophosphate synthase large subunit [Mentha x piperita]
Length = 377
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ G RI+RV+ E+ ++GS+G+V GQ ++ E+
Sbjct: 195 GDALLSFAFEHVAAATK--GAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGL 252
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGGG EE+ K
Sbjct: 253 DHLEFIHHHKTAALLQGSVVLGAILGGGKEEEVAK 287
>gi|62959173|gb|AAY23694.1| farnesyl diphosphate synthase [Roseobacter denitrificans OCh 114]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|62959179|gb|AAY23697.1| farnesyl diphosphate synthase [Bacillus sp. JL-39]
gi|62959189|gb|AAY23702.1| farnesyl diphosphate synthase [Kocuria sp. JL-51]
gi|62959199|gb|AAY23707.1| farnesyl diphosphate synthase [Rhodococcus sp. JL-61]
gi|73811207|gb|AAY23722.1| farnesyl diphosphate synthase [Sagittula sp. JL-351]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|62959193|gb|AAY23704.1| farnesyl diphosphate synthase [Exiguobacterium sp. JL-25]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTTGAVLAGAKPEEVQ 122
>gi|62959177|gb|AAY23696.1| farnesyl diphosphate synthase [Bacillus sp. JL-34]
gi|62959197|gb|AAY23706.1| farnesyl diphosphate synthase [Bacillus sp. JL-29]
gi|73811209|gb|AAY23723.1| farnesyl diphosphate synthase [Citromicrobium bathyomarinum JL354]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|119509103|ref|ZP_01628254.1| Polyprenyl synthetase [Nodularia spumigena CCY9414]
gi|119466269|gb|EAW47155.1| Polyprenyl synthetase [Nodularia spumigena CCY9414]
Length = 309
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ P + R+L+V+ + +A+G+ G+V GQ +L +++ E
Sbjct: 128 DGLLAYAFEFVATQ-TPENVSRERVLQVIARLGKALGAAGLVGGQVVDLDSEGKTDISLE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CG I+ G S E +++ R
Sbjct: 187 TLNFIHNHKTAALLEASVVCGGIVAGASSENVQRLSR 223
>gi|325290005|ref|YP_004266186.1| farnesyl-diphosphate synthase [Syntrophobotulus glycolicus DSM
8271]
gi|324965406|gb|ADY56185.1| farnesyl-diphosphate synthase [Syntrophobotulus glycolicus DSM
8271]
Length = 289
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY-------NELQCSQ 55
D +L +G +LLAS D P R ++V+ E A+G QG+V GQ EL SQ
Sbjct: 111 DGLLTYGFQLLAS-DVPVPLE--RQIKVIRETAEAVGWQGMVRGQVLDTLGEKGELSVSQ 167
Query: 56 YVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + G L T GAILGGG EEI +
Sbjct: 168 ITNI----HHLKTGALLTASVRLGAILGGGLEEEIRQ 200
>gi|62959213|gb|AAY23714.1| farnesyl diphosphate synthase [Synechococcus sp. WH 5701]
Length = 145
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ +++
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQVVDLESEGKTDVSV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|115473007|ref|NP_001060102.1| Os07g0580900 [Oryza sativa Japonica Group]
gi|33146837|dbj|BAC79826.1| putative geranylgeranyl diphosphate synthase [Oryza sativa Japonica
Group]
gi|50509220|dbj|BAD30490.1| putative geranylgeranyl diphosphate synthase [Oryza sativa Japonica
Group]
gi|113611638|dbj|BAF22016.1| Os07g0580900 [Oryza sativa Japonica Group]
gi|215767933|dbj|BAH00162.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768308|dbj|BAH00537.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 366
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 2 ADAMLPFGLELLASSDN-----PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY 56
DA+L +A D+ A + R++R + E+ R +GS+G+V GQ +L+ +
Sbjct: 176 GDALLSLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGS 235
Query: 57 VE------MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E + Y K L GAILGGGS E+IE
Sbjct: 236 TETVPLERLEYIHLHKT-AALLEASVVIGAILGGGSDEQIE 275
>gi|291170333|gb|ADD82422.1| geranylgeranyl diphosphate synthase [Jatropha curcas]
Length = 370
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML E +A + + R++RV+ E+ A+GS+G+V GQ ++ CS+ E+
Sbjct: 189 GDAMLSLAFEHIARATKNV--SPERVVRVITELGSAVGSEGLVAGQIVDV-CSEGKEVNV 245
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L CGAI GG E IE+
Sbjct: 246 KDLEYIHIHKTAKLLEAAVVCGAIAGGADDESIER 280
>gi|125600856|gb|EAZ40432.1| hypothetical protein OsJ_24885 [Oryza sativa Japonica Group]
Length = 333
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 DAMLPFGLELLASSDN-----PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV 57
DA+L +A D+ A + R++R + E+ R +GS+G+V GQ +L+ +
Sbjct: 81 DALLSLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGST 140
Query: 58 EMTYETYKKNEGGLHTCGA------ACGAILGGGSVEEIE 91
E T + LH A GAILGGGS E+IE
Sbjct: 141 E-TVPLERLEYIHLHKTAALLEASVVIGAILGGGSDEQIE 179
>gi|125558937|gb|EAZ04473.1| hypothetical protein OsI_26621 [Oryza sativa Indica Group]
Length = 366
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 2 ADAMLPFGLELLASSDN-----PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY 56
DA+L +A D+ A + R++R + E+ R +GS+G+V GQ +L+ +
Sbjct: 176 GDALLSLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGS 235
Query: 57 VE------MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E + Y K L GAILGGGS E+IE
Sbjct: 236 TETVPLERLEYIHLHKT-AALLEASVVIGAILGGGSDEQIE 275
>gi|87299435|dbj|BAE79550.1| geranylgeranyl pyrophosphate synthase [Chrysanthemum x morifolium]
Length = 345
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ ++ RI+R + E+ + +GS+G+V GQ ++ CS+ ++
Sbjct: 164 GDALLSFAFEHVATATKDV--SAERIVRAIGELAKCIGSEGLVAGQVVDI-CSEGADVGL 220
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GGGS E+E+
Sbjct: 221 EHLEFIHLHKTAALLEGSVVLGAIMGGGSDVEVER 255
>gi|89148075|gb|ABC46867.3| geranylgeranyl diphosphate synthase [Stevia rebaudiana]
Length = 147
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E +A++ G + RI+RV+ E+ R++GS+G+V GQ ++ S+ ++ +
Sbjct: 41 DALLSLSFEHIATA--TKGVSKDRIVRVIGELARSVGSEGLVAGQVVDI-LSEGADVGLD 97
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAI+GGGS ++IEK
Sbjct: 98 HLEYIHIHKTAMLLESSVVIGAIMGGGSDQQIEK 131
>gi|6277256|dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia dulcis]
Length = 351
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L + E LA++ G RI+RV+ E+ + + S+G++ GQ ++ CS+ V
Sbjct: 169 GDALLAYSFEYLATATE--GVLPERIVRVIAELAKCIRSEGLLAGQVVDI-CSEGVSEIG 225
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ EE+E+
Sbjct: 226 LEHLEYIHLHKTAALLEGSVVLGAILGGGNDEEVER 261
>gi|402571586|ref|YP_006620929.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus meridiei
DSM 13257]
gi|402252783|gb|AFQ43058.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus meridiei
DSM 13257]
Length = 288
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---EM 59
DA+L + ELLAS + R LR++ E+ A G G+V GQ ++ V
Sbjct: 110 DALLTYAFELLASLEL---GQPERELRIIREVAVASGKDGMVRGQVADITAEGKVLTLPE 166
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G + T A G +LGGGS ++I+
Sbjct: 167 IEEIHKGKTGAILTVSARLGGVLGGGSEDDIQ 198
>gi|224096916|ref|XP_002310785.1| predicted protein [Populus trichocarpa]
gi|222853688|gb|EEE91235.1| predicted protein [Populus trichocarpa]
Length = 365
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 18/101 (17%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE--- 58
DA+L F E +A S + RI+R + E+ +A+G++G+V GQ ++ CS+ +
Sbjct: 183 GDALLSFAFEHIAVSTIHV--SPLRIVRAIGELAKAIGAEGLVAGQVVDI-CSEGLSEVG 239
Query: 59 -------MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
++T K EG + GAILGGG+ EE+EK
Sbjct: 240 LEQLEFIHVHKTAKLLEGAV-----VLGAILGGGTDEEVEK 275
>gi|62959169|gb|AAY23692.1| farnesyl diphosphate synthase [Erythrobacter litoralis]
Length = 145
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLA-SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A + D PA R+L+V+V + +A+G++G+V GQ +L+ + +
Sbjct: 33 DALLSYAFEYVARTPDIPAE----RLLQVIVRLGQAVGAEGLVGGQLVDLESEGKTDASV 88
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
ET + G L GA+L G EE++
Sbjct: 89 ETLNFIHTHKTGALLEVCVTAGAVLAGAKPEEVQ 122
>gi|56122554|gb|AAV74395.1| geranylgeranyl diphosphate synthase [Adonis aestivalis var.
palaestina]
Length = 364
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A++ G + R++R + E+ + +GS+G+V GQ ++ + +
Sbjct: 182 GDALLAFAFEYVANAT--VGVSPSRVVRAIGELAKDIGSEGLVAGQVVDILSAGMSNIGL 239
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGGG+ E++E+
Sbjct: 240 DHLEFIHLHKTAALLEASVVIGAILGGGTDEQVER 274
>gi|414887302|tpg|DAA63316.1| TPA: putative geranylgeranyl pyrophosphate synthase 2 [Zea mays]
Length = 441
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 2 ADAMLPFGLELLAS--SDNPAGN---NSGRILRVMVEMTRAMGSQGVVEGQYNELQ---C 53
DA+L +AS S PA + + R++R + E+ R +GS+G+V GQ +L+
Sbjct: 251 GDALLSLSFHHMASVGSYPPAVDPEKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGT 310
Query: 54 SQYV--EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
SQ V E+ + L GAI+GGG+ E+IE
Sbjct: 311 SQTVPLELLEYIHLHKTAALLEASVVIGAIIGGGTDEQIE 350
>gi|308080812|ref|NP_001183944.1| putative geranylgeranyl pyrophosphate synthase 2 [Zea mays]
gi|148535921|gb|ABQ85647.1| putative geranylgeranyl pyrophosphate synthase 2 [Zea mays]
Length = 361
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 2 ADAMLPFGLELLAS--SDNPAGN---NSGRILRVMVEMTRAMGSQGVVEGQYNELQ---C 53
DA+L +AS S PA + + R++R + E+ R +GS+G+V GQ +L+
Sbjct: 171 GDALLSLSFHHMASVGSYPPAVDPEKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGT 230
Query: 54 SQYV--EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
SQ V E+ + L GAI+GGG+ E+IE
Sbjct: 231 SQTVPLELLEYIHLHKTAALLEASVVIGAIIGGGTDEQIE 270
>gi|303271183|ref|XP_003054953.1| geranyl pyrophosphate synthase [Micromonas pusilla CCMP1545]
gi|226462927|gb|EEH60205.1| geranyl pyrophosphate synthase [Micromonas pusilla CCMP1545]
Length = 343
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEMT 60
DA+L E + + P + R LRV+V++ + +GS+G+V GQ ++ + + E+T
Sbjct: 159 DALLSHAFEYIGR-ETPKSVPAERTLRVLVDVGKCVGSEGLVGGQVVDIMSEGADADEVT 217
Query: 61 YETYK----KNEGGLHTCGAACGAILGGGSVEEIEK--KFRGLI 98
ET K G L GAIL G E++E+ K+ LI
Sbjct: 218 LETLKYIHAHKTGALLEVSVTSGAILAGAKEEDVERLGKYAQLI 261
>gi|411120370|ref|ZP_11392744.1| geranylgeranyl pyrophosphate synthase [Oscillatoriales
cyanobacterium JSC-12]
gi|410709751|gb|EKQ67264.1| geranylgeranyl pyrophosphate synthase [Oscillatoriales
cyanobacterium JSC-12]
Length = 308
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A G R+L+V+ + RA+G+ G+V GQ +L+C +++ E
Sbjct: 128 DGLLAYAFEHVAIETK--GVAPERLLKVVAMLGRAVGAAGLVGGQVVDLECEGKSDVSLE 185
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L GA+L G S E++++ R
Sbjct: 186 TLNFIHNHKTAALLEASVTSGAVLSGASDEDVQRLLR 222
>gi|289526777|pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
gi|289526780|pdb|3KRA|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium
gi|289526781|pdb|3KRC|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
gi|289526784|pdb|3KRC|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp
gi|289526785|pdb|3KRF|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
gi|289526788|pdb|3KRF|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (I)
gi|289526789|pdb|3KRO|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
gi|289526792|pdb|3KRO|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (Ii)
gi|289526793|pdb|3KRP|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
gi|289526796|pdb|3KRP|D Chain D, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
gi|310942863|pdb|3OAB|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942866|pdb|3OAB|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942867|pdb|3OAC|A Chain A, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
gi|310942870|pdb|3OAC|D Chain D, Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A++ G RI+RV+ E+ ++GS+G+V GQ ++ E+ +
Sbjct: 114 DALLSFAFEHVAAATK--GAPPERIVRVLGELAVSIGSEGLVAGQVVDVCSEGMAEVGLD 171
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGG EE+ K
Sbjct: 172 HLEFIHHHKTAALLQGSVVLGAILGGGKEEEVAK 205
>gi|427737891|ref|YP_007057435.1| geranylgeranyl pyrophosphate synthase [Rivularia sp. PCC 7116]
gi|427372932|gb|AFY56888.1| geranylgeranyl pyrophosphate synthase [Rivularia sp. PCC 7116]
Length = 311
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ N +IL+V+ + RA+G+ G+V GQ +L+ +++ E
Sbjct: 131 DGLLAYAFEYVAT--NTKNVPPTQILQVISRLGRAVGAAGLVGGQVVDLEMEGKTDVSLE 188
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CG IL G S E+I+K R
Sbjct: 189 TLNFIHNHKTAALLEASVVCGGILSGTSPEDIQKLQR 225
>gi|440682769|ref|YP_007157564.1| farnesyl-diphosphate synthase [Anabaena cylindrica PCC 7122]
gi|428679888|gb|AFZ58654.1| farnesyl-diphosphate synthase [Anabaena cylindrica PCC 7122]
Length = 309
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L E +A+ P R L+V+ + +A+G+ G+V GQ +L +++ E
Sbjct: 128 DGLLALAFEFVATQ-TPQNVPRERALQVIARLGKALGAAGLVGGQVVDLDSEGKSDISLE 186
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG ++ G S E++EK R
Sbjct: 187 TLNFIHNHKTAALLEAC-VVCGGVIAGASAEDVEKLTR 223
>gi|558925|gb|AAA86688.1| geranylgeranyl pyrophosphate synthase [Lupinus albus]
Length = 316
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ----CSQYVE 58
DA+L F E +A S +G + RI+ + E+ +++G++G+V GQ ++ C +E
Sbjct: 135 DALLAFAFEHIAVS--TSGVSPERIIGAIGELAKSIGTEGLVAGQVVDINSEGLCDIGLE 192
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKIT 102
+ L GAILGGG EE+EK ++ GL+ ++
Sbjct: 193 KLEFIHLHKTAALLEGSVVVGAILGGGCNEEVEKLRMFARYIGLMFQVV 241
>gi|255580739|ref|XP_002531191.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
gi|223529232|gb|EEF31206.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
Length = 372
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 17/100 (17%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS------- 54
DA+L F E +A S + R++R + E+ A+GS+G+V GQ ++
Sbjct: 191 GDALLSFSFEHVARSTKNVSPD--RVVRAIAELGSAVGSEGLVAGQIVDIDSEGKDVSVS 248
Query: 55 --QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+Y+ + ++T K E + CGAILGG E +E+
Sbjct: 249 DLEYIHI-HKTAKLLEASV-----VCGAILGGADDESVER 282
>gi|363814567|ref|NP_001242759.1| uncharacterized protein LOC100788186 [Glycine max]
gi|255635048|gb|ACU17882.1| unknown [Glycine max]
Length = 342
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+ P G + S +LRV+ E+ R++GS G+ GQ+ +L+
Sbjct: 160 GDALFPLGFRHIVSQTPSDLVPESHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFI 219
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ K E G A CG L G +EIE+ R
Sbjct: 220 QEKKFGEMG--ESSAVCGGFLAGAEDDEIERLRR 251
>gi|336359762|gb|AEI53622.1| chloroplast geranylgeranyl diphosphate synthase [Catharanthus
roseus]
Length = 383
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V GQ ++ CS+ +
Sbjct: 201 GDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSEGIADVG 257
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GG + E+I K
Sbjct: 258 LEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISK 293
>gi|13431546|sp|Q42698.1|GGPPS_CATRO RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic;
Short=GGPP synthase; Short=GGPS; AltName:
Full=(2E,6E)-farnesyl diphosphate synthase; AltName:
Full=Dimethylallyltranstransferase; AltName:
Full=Farnesyl diphosphate synthase; AltName:
Full=Farnesyltranstransferase; AltName:
Full=Geranyltranstransferase; Flags: Precursor
gi|1063276|emb|CAA63486.1| geranylgeranyl pyrophosphate synthase [Catharanthus roseus]
Length = 357
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V GQ ++ CS+ +
Sbjct: 175 GDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSEGIADVG 231
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GG + E+I K
Sbjct: 232 LEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISK 267
>gi|168042697|ref|XP_001773824.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674939|gb|EDQ61441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 332
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC----SQYVE 58
DA+L + E +A + G + R+LRV+ + +A+GS+G+V GQ ++ + +E
Sbjct: 151 DALLAYAFEHIARATT--GVPADRVLRVIAHLGKAVGSEGLVAGQIVDIASEGDRTVGLE 208
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGG S +EI +
Sbjct: 209 ILEYVHTHKTAVLLESAVVSGAILGGASEDEISR 242
>gi|46310089|gb|AAS87323.1| geranylgeranyl pyrophosphate synthetase [Taxus wallichiana var.
chinensis]
Length = 207
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A + + S R LRV+ E+ + +GSQG+V GQ ++ + +
Sbjct: 45 DALLSFAFEHIAVATSKT-VPSDRTLRVISELGKTIGSQGLVGGQVVDITSEGDANVDLK 103
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L C G ILGG + +EI + R
Sbjct: 104 TLEWIHIHKTAVLLECSVVSGGILGGATEDEIARIRR 140
>gi|424513337|emb|CCO65959.1| geranylgeranyl pyrophosphate synthase [Bathycoccus prasinos]
Length = 376
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----E 58
DA+L E +A G + +ILRV+ ++ + +GS+G+V GQ +++
Sbjct: 191 DALLSHAFEYIARETK--GVPAEKILRVIADVGKCVGSEGLVGGQVVDIESEGLAMEGKP 248
Query: 59 MTYETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
++ ET K G L GAILGGG+ E+IE+
Sbjct: 249 VSLETLKYIHAHKTGALLETAVVSGAILGGGTEEDIER 286
>gi|56122556|gb|AAV74396.1| geranylgeranyl diphosphate synthase [Adonis aestivalis var.
palaestina]
Length = 310
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A++ G + R++R + E+ + +GS+G+V GQ ++ + + +
Sbjct: 129 DALLAFAFEYVANA--TVGVSPSRVIRAIGELAKDIGSEGLVAGQVVDILSAGMSNIGLD 186
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGG+ E++E+
Sbjct: 187 HLEFIHLHKTAALLEASVVIGAILGGGTDEQVER 220
>gi|17227709|ref|NP_484257.1| geranylgeranyl diphosphate synthase [Nostoc sp. PCC 7120]
gi|17135191|dbj|BAB77737.1| geranylgeranyl diphosphate synthase [Nostoc sp. PCC 7120]
Length = 309
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A P R+L+V+ + RA+G+ G+V GQ +L + + E
Sbjct: 128 DGLLAYAFEFVAIR-TPESVPRDRVLQVVARLGRALGAAGLVGGQVVDLDSEGKSDTSLE 186
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C CG IL G S E +++ R
Sbjct: 187 TLNFIHNHKTAALLEAC-VVCGGILAGASSENVQRLSR 223
>gi|89895097|ref|YP_518584.1| hypothetical protein DSY2351 [Desulfitobacterium hafniense Y51]
gi|423073546|ref|ZP_17062285.1| putative geranyltranstransferase [Desulfitobacterium hafniense DP7]
gi|89334545|dbj|BAE84140.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855624|gb|EHL07587.1| putative geranyltranstransferase [Desulfitobacterium hafniense DP7]
Length = 289
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLASSDNP-AGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ----YV 57
DA+L + EL+A P +G R LR + E+ +A G +G+V GQ +L+ +
Sbjct: 110 DALLTYAFELIA---QPMSGVEPQRQLRAIREVAQAAGPEGMVGGQMLDLEAEEKQLNLA 166
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E+ + ++ G + A GAIL GG+ E+IE
Sbjct: 167 ELE-QVHRLKTGAILVVAARLGAILAGGTEEKIE 199
>gi|219115519|ref|XP_002178555.1| farnesyltranstransferase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410290|gb|EEC50220.1| farnesyltranstransferase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 337
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L +A + G + R+L V+V + R++G++G+ GQ +L+C T
Sbjct: 156 GDALLSDSFRHVA--EQTKGVAADRVLDVVVRLGRSVGAKGLAGGQVMDLECEGKGSATL 213
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E + L A GAI+GG S EE++
Sbjct: 214 EDLRWIHTHKTATLLQVAVASGAIIGGASAEEVK 247
>gi|255080134|ref|XP_002503647.1| geranyl pyrophosphate synthase [Micromonas sp. RCC299]
gi|226518914|gb|ACO64905.1| geranyl pyrophosphate synthase [Micromonas sp. RCC299]
Length = 349
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEMT 60
DA+L E + + P + R LRV+V++ + +GS+G+V GQ ++ + ++ E+T
Sbjct: 165 DALLSHAFEYIGR-ETPKSVPAERTLRVIVDVGKCVGSEGLVGGQVVDIMSEGAEAGEVT 223
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEK--KFRGLI 98
ET + G L GAIL G E++E+ K+ LI
Sbjct: 224 VETLQYIHAHKTGALLEVSVTAGAILAGAKEEDVERLGKYAQLI 267
>gi|20386368|gb|AAM21639.1|AF492023_1 geranylgeranyl pyrophosphate synthase [Cistus creticus]
Length = 369
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S G + +I+R + E+ +A+G +G+V GQ ++ ++
Sbjct: 187 GDALLSFAFEHVAVST--VGASPDKIVRAVGELAKAVGKEGLVAGQVVDITSEGLNDVGL 244
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGGG+ EE+E+
Sbjct: 245 DHLEYIHVHKTAVLLEAAVVLGAILGGGTDEEVER 279
>gi|290575616|gb|ADD49735.1| geranylgeranyl diphosphate synthase [Nicotiana tabacum]
Length = 365
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMTY 61
DA+L E +AS R+++ + E+ A+GS+G+V GQ ++ + V +T
Sbjct: 185 DALLSLAFEHVASKTKDV--TPQRVVQAVGELGSAVGSKGLVAGQIVDIASEGKQVSLTE 242
Query: 62 ETYKKNE--GGLHTCGAACGAILGGGSVEEIEK 92
Y N G L CGAI+GGG+ E+E+
Sbjct: 243 LEYIHNHKTGKLLEAAVVCGAIIGGGNEIEVER 275
>gi|428311367|ref|YP_007122344.1| geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113]
gi|428252979|gb|AFZ18938.1| geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113]
Length = 309
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 3 DAMLPFGLELLASSDN--PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E +A+ PA ++L+V+ + RA+G+ G+V GQ +L+ ++
Sbjct: 129 DGLLAYAFEYVATQTQNVPAH----QVLQVVARLGRAVGAAGLVGGQVVDLESEGNSDIQ 184
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + G L CG ILGG + EEIE+ R
Sbjct: 185 EETLTFIHTHKTGALLEACVVCGGILGGVTDEEIERLSR 223
>gi|188586314|ref|YP_001917859.1| farnesyl-diphosphate synthase [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351001|gb|ACB85271.1| farnesyl-diphosphate synthase [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 297
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + EL+ S ++ L + E+ +A G++G++ GQ +++ + ++ E
Sbjct: 115 DALLNYAFELMTSKGVENFTDARTPLWAISEVAKASGTKGMIGGQVVDIKSEKNADIDLE 174
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T +K G L T GAIL S ++EK
Sbjct: 175 TVSYIHKHKTGALFTASIRIGAILSQASQADLEK 208
>gi|167628424|ref|YP_001678923.1| geranylgeranyl pyrophosphate synthase [Heliobacterium modesticaldum
Ice1]
gi|167591164|gb|ABZ82912.1| geranylgeranyl pyrophosphate synthase [Heliobacterium modesticaldum
Ice1]
Length = 296
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVE 58
D +L +LA G + +L+V+ E+ A GS G++ GQ +++
Sbjct: 115 DGLLTRAFGVLAEEGLRCGRSPALVLQVIAELADAAGSMGMIGGQVMDMESENKQIDVAT 174
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
M Y + G L GA+LGGGSVE++E R GL +IT ++
Sbjct: 175 MAY-IHAHKTGALIRASLRIGALLGGGSVEQVEALSRYGDHLGLAFQITDDLL 226
>gi|194016844|ref|ZP_03055457.1| geranyltranstransferase (Farnesyl-diphosphate synthase)(FPP
synthase) [Bacillus pumilus ATCC 7061]
gi|194011450|gb|EDW21019.1| geranyltranstransferase (Farnesyl-diphosphate synthase)(FPP
synthase) [Bacillus pumilus ATCC 7061]
Length = 296
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L L+ +S + ++ + LR++ E+ ++ G+ G+V GQ+++++ Q E
Sbjct: 116 DALLTESFRLI-TSQLSSSVSADKKLRIVDELVKSAGALGMVGGQFDDMEAEQKQVSLAE 174
Query: 63 ---TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + G L T A GA+L G S ++IEK
Sbjct: 175 LESIHARKTGKLLTFSVAAGAMLAGASDDDIEK 207
>gi|354569185|ref|ZP_08988342.1| Farnesyltranstransferase [Fischerella sp. JSC-11]
gi|353538935|gb|EHC08440.1| Farnesyltranstransferase [Fischerella sp. JSC-11]
Length = 308
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E +A + D PA R+LRV+ + RA+G+ G+V GQ +L+ ++
Sbjct: 128 DGLLAYAFEYVAVNTEDVPAE----RLLRVVAHLGRAVGAAGLVGGQVLDLESEGKSDIC 183
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
ET + G L CG IL G S + +++
Sbjct: 184 SETLDFIHHHKTGALLEASVVCGGILAGTSEDNLKR 219
>gi|428769681|ref|YP_007161471.1| farnesyl-diphosphate synthase [Cyanobacterium aponinum PCC 10605]
gi|428683960|gb|AFZ53427.1| farnesyl-diphosphate synthase [Cyanobacterium aponinum PCC 10605]
Length = 325
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E +A +S P S RI++V+ + +A+G+ G+V GQ +L+C ++T
Sbjct: 145 DGLLAYAFEFVAIKTSCIP----SERIVKVLAILGKAVGANGLVGGQVLDLECEGKADVT 200
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+T +++ G L + GA+L G S +++ +
Sbjct: 201 ADTLSFIHRRKTGALLEACVSSGAVLAGASEDDLAR 236
>gi|326494730|dbj|BAJ94484.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 358
Score = 42.4 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 18 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE------MTYETYKKNEGGL 71
+PA ++ R++R + E+ R +GS+G+V GQ +L+ + E + Y K L
Sbjct: 190 DPA-KHTARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTEPVPLDRLEYIHLHKT-AAL 247
Query: 72 HTCGAACGAILGGGSVEEIEK 92
GAI+GGGS E+IE+
Sbjct: 248 LEASVVIGAIIGGGSEEQIER 268
>gi|359477279|ref|XP_002275812.2| PREDICTED: geranylgeranyl pyrophosphate synthase 1,
chloroplastic-like [Vitis vinifera]
Length = 380
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 33 EMTRAMGSQGVVEGQYNELQCSQYVEMTYE----TYKKNEGGLHTCGAACGAILGGGSVE 88
E+ R++GSQG+V GQ+ +L E+ E + G L A GA+LGGGS E
Sbjct: 227 ELARSIGSQGLVAGQFLDLSSEGSPEIGLEGLESIHINKAGPLLEASAVIGAMLGGGSSE 286
Query: 89 EIE--KKF 94
++E +KF
Sbjct: 287 QMEILRKF 294
>gi|443311531|ref|ZP_21041158.1| geranylgeranyl pyrophosphate synthase [Synechocystis sp. PCC 7509]
gi|442778410|gb|ELR88676.1| geranylgeranyl pyrophosphate synthase [Synechocystis sp. PCC 7509]
Length = 308
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ N + ++L+V+ ++ RA+G+ G+V GQ +L+ +++ E
Sbjct: 128 DGLLAYAFEFVAT--NTFNVPAEQVLKVIAKLGRAVGAAGLVGGQVVDLESEGKTDVSLE 185
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + L CG IL G S E++++
Sbjct: 186 TLNFIHNHKTAALLEASVVCGGILAGMSEEDLQR 219
>gi|12082285|dbj|BAB20883.1| GGPP synthase [Taraxacum japonicum]
Length = 127
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F + +AS+ G + R+L + E+ +++G++G+V GQ ++ + ++ E
Sbjct: 25 DSLLAFAFQHIASA--TVGASPARVLAAVGELAKSIGTEGLVAGQVVDIASTGAKDVGLE 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAI+GGGS ++EK
Sbjct: 83 QLEFIHIHKTAALLEAAVVLGAIVGGGSDTQVEK 116
>gi|357122245|ref|XP_003562826.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Brachypodium distachyon]
Length = 356
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 2 ADAMLPFGLELLASSDN-----PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY 56
DA+L +AS D+ + R++R + E+ R +GS+G+V GQ +L+ +
Sbjct: 166 GDALLSLSFGHMASMDSYPPDVDPEKHPARVVRGIGELARCIGSEGLVAGQVVDLEMTGS 225
Query: 57 VE------MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + Y K L GAI+GGGS E+IE+
Sbjct: 226 TETVPLDRLEYIHLHKT-AALLEASVVIGAIIGGGSDEQIER 266
>gi|385047507|gb|AFI39658.1| geranyl geranyl pyrophosphate synthase, partial [Hordeum
chilense]
gi|385047509|gb|AFI39659.1| geranyl geranyl pyrophosphate synthase, partial [Hordeum
chilense]
Length = 101
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 18 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE------MTYETYKKNEGGL 71
+PA ++ R++R + E+ R +GS+G+V GQ +L+ + E + Y K L
Sbjct: 11 DPA-KHTARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVPLDRLEYIHLHKT-AAL 68
Query: 72 HTCGAACGAILGGGSVEEIEK 92
GAI+GGGS E+IE+
Sbjct: 69 LEASVVIGAIIGGGSEEQIER 89
>gi|218437608|ref|YP_002375937.1| polyprenyl synthetase [Cyanothece sp. PCC 7424]
gi|218170336|gb|ACK69069.1| Polyprenyl synthetase [Cyanothece sp. PCC 7424]
Length = 307
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ ++T E
Sbjct: 127 DGLLSYAFEYVATQTRNVPPE--QILEVIARLGRTVGAAGLVGGQVLDLESEGKSDITPE 184
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L GAIL G + EE+EK R
Sbjct: 185 TLTFIHTHKTGALLETSVVSGAILAGATREEVEKLSR 221
>gi|308081242|ref|NP_001183930.1| putative geranylgeranyl pyrophosphate synthase 1 [Zea mays]
gi|148535919|gb|ABQ85646.1| putative geranylgeranyl pyrophosphate synthase 1 [Zea mays]
gi|414590653|tpg|DAA41224.1| TPA: hypothetical protein ZEAMMB73_231747 [Zea mays]
Length = 367
Score = 42.4 bits (98), Expect = 0.036, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 2 ADAMLPFGLELLAS-----SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ---C 53
DA+L +AS D + R++R + E+ R +GS+G+V GQ +L+
Sbjct: 177 GDALLSLSFHHMASVGSYPPDVDPEKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGT 236
Query: 54 SQYVEMTYETY--KKNEGGLHTCGAACGAILGGGSVEEIEK 92
S+ V + Y L GAI+GGG+ E+IE+
Sbjct: 237 SETVPLERLEYIHLHKTAALLEASVVIGAIIGGGTDEQIER 277
>gi|209526715|ref|ZP_03275238.1| Polyprenyl synthetase [Arthrospira maxima CS-328]
gi|376002372|ref|ZP_09780207.1| geranyltranstransferase [Arthrospira sp. PCC 8005]
gi|423067929|ref|ZP_17056719.1| geranylgeranyl diphosphate synthase [Arthrospira platensis C1]
gi|209492847|gb|EDZ93179.1| Polyprenyl synthetase [Arthrospira maxima CS-328]
gi|375329252|emb|CCE15960.1| geranyltranstransferase [Arthrospira sp. PCC 8005]
gi|406710557|gb|EKD05765.1| geranylgeranyl diphosphate synthase [Arthrospira platensis C1]
Length = 316
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G R+L+V+ + RA+G+ G+V GQ +L +++ E
Sbjct: 136 DGLLSYAFEFVATQTQ--GVPPERVLQVIGRLGRAVGATGLVGGQVVDLASEGLSDISEE 193
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGAIL G + ++E+ R
Sbjct: 194 TLTFIHTHKTGALLEACVVCGAILAGANETDLERLSR 230
>gi|4322331|gb|AAD16018.1| geranylgeranyl diphosphate synthase [Taxus canadensis]
gi|44972242|gb|AAS49033.1| geranylgeranyl diphosphate synthase [Taxus x media]
gi|45505274|gb|AAS67008.1| geranylgeranyl diphosphate synthase [Taxus x media]
gi|86277807|gb|ABC88389.1| geranylgeranyl diphosphate synthase [Taxus wallichiana]
Length = 393
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A + + S R LRV+ E+ + +GSQG+V GQ ++ +
Sbjct: 210 GDALLSFAFEHIAVATSKT-VPSDRTLRVISELGKTIGSQGLVGGQVVDITSEGDANVDL 268
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T + L C G ILGG + +EI + R
Sbjct: 269 KTLEWIHIHKTAVLLECSVVSGGILGGATEDEIARIRR 306
>gi|15224199|ref|NP_179454.1| geranylgeranyl pyrophosphate synthase 3 [Arabidopsis thaliana]
gi|75266042|sp|Q9SLG2.1|GGPP4_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase 4; Short=GGPP
synthase 4; Short=GGPS4; AltName: Full=(2E,6E)-farnesyl
diphosphate synthase 4; AltName:
Full=Dimethylallyltranstransferase 4; AltName:
Full=Farnesyl diphosphate synthase 4; AltName:
Full=Farnesyltranstransferase 4; AltName:
Full=Geranyltranstransferase 4; Flags: Precursor
gi|4185130|gb|AAD08933.1| putative geranylgeranyl pyrophosphate synthase [Arabidopsis
thaliana]
gi|20197573|gb|AAM15136.1| putative geranylgeranyl pyrophosphate synthase [Arabidopsis
thaliana]
gi|91806196|gb|ABE65826.1| geranylgeranyl pyrophosphate synthase/GGPP
synthetase/farnesyltranstransferase [Arabidopsis
thaliana]
gi|330251694|gb|AEC06788.1| geranylgeranyl pyrophosphate synthase 3 [Arabidopsis thaliana]
Length = 372
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL------QCSQYV 57
A+L E L +D +S +++R + E+ +++G++G+V GQ +L Q +
Sbjct: 192 ALLALAFEHLTEADV----SSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGL 247
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L A GA++GGG+ +EIEK
Sbjct: 248 EDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 282
>gi|389571717|ref|ZP_10161806.1| geranyltranstransferase [Bacillus sp. M 2-6]
gi|388428611|gb|EIL86407.1| geranyltranstransferase [Bacillus sp. M 2-6]
Length = 296
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 3 DAMLPFGLELLAS---SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY--- 56
DA+L L+ S D PA LR++ E+ + G+ G+V GQ+++++ Q
Sbjct: 116 DALLTESFRLITSQLSDDVPADQK----LRIIDELVTSAGALGMVGGQFDDMEAEQKQIP 171
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + + G L T GAIL G +EIEK
Sbjct: 172 LSELESIHARKTGKLLTFSVVAGAILAGAPDDEIEK 207
>gi|116831087|gb|ABK28498.1| unknown [Arabidopsis thaliana]
Length = 373
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL------QCSQYV 57
A+L E L +D +S +++R + E+ +++G++G+V GQ +L Q +
Sbjct: 192 ALLALAFEHLTEADV----SSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGL 247
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L A GA++GGG+ +EIEK
Sbjct: 248 EDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 282
>gi|380039815|gb|AFD32422.1| geranylgeranyl diphosphate synthase [Taxus x media]
Length = 393
Score = 42.4 bits (98), Expect = 0.039, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A + + S R LRV+ E+ + +GSQG+V GQ ++ +
Sbjct: 210 GDALLSFAFEHIAVATSKT-VPSDRTLRVISELGKTIGSQGLVGGQVVDIASEGDANVDL 268
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+T + L C G ILGG + +EI +
Sbjct: 269 KTLEWIHIHKTAVLLECSVVSGGILGGATEDEIAR 303
>gi|334119738|ref|ZP_08493823.1| Farnesyltranstransferase [Microcoleus vaginatus FGP-2]
gi|333457900|gb|EGK86521.1| Farnesyltranstransferase [Microcoleus vaginatus FGP-2]
Length = 308
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ ++L+ + + RA G+ G+V GQ +L+ +++ E
Sbjct: 128 DGLLTYAFEFIATKTQNVPPQ--QVLQTIAHLARASGAAGLVGGQVVDLESEGKTDVSLE 185
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGAIL G S ++++ R
Sbjct: 186 TLNYIHAHKTGALLEACVVCGAILAGASAADLQRLSR 222
>gi|242050680|ref|XP_002463084.1| hypothetical protein SORBIDRAFT_02g037510 [Sorghum bicolor]
gi|241926461|gb|EER99605.1| hypothetical protein SORBIDRAFT_02g037510 [Sorghum bicolor]
Length = 371
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 2 ADAMLPFGLELLAS-----SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY 56
DA+L +AS D + R++R + E+ R +GS+G+V GQ +L+ +
Sbjct: 181 GDALLSLSFHHMASVGSYPPDVDPEKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGT 240
Query: 57 VE------MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + Y K L GAI+GGG+ E+IE+
Sbjct: 241 SEPVPLERLEYIHLHKT-AALLEASVVIGAIIGGGTDEQIER 281
>gi|271968156|ref|YP_003342352.1| geranylgeranyl pyrophosphate synthase-like protein
[Streptosporangium roseum DSM 43021]
gi|270511331|gb|ACZ89609.1| Geranylgeranyl pyrophosphate synthase-like protein
[Streptosporangium roseum DSM 43021]
Length = 346
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEM 59
DA+L ++LA+ +PA + RI + Q ++EGQ+ ++ + Q VE+
Sbjct: 130 GDALLTLAFDVLAAGGHPATPRAARIFSAAI--------QELLEGQHTDVAFERRQDVEL 181
Query: 60 T--YETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
G L C A GA+ GGGS+ ++E
Sbjct: 182 AECLSMAAGKTGALLGCACALGALFGGGSLAQVE 215
>gi|224133886|ref|XP_002327704.1| predicted protein [Populus trichocarpa]
gi|222836789|gb|EEE75182.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 42.0 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 18/104 (17%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT- 60
DA+L F E +A S + RI+R + E+ + +G++G+V GQ ++ CS+ +
Sbjct: 184 GDALLAFAFEHIAVST--LNVSPLRIVRAVGELAKVIGAEGLVAGQVVDI-CSEGLSEVG 240
Query: 61 ---------YETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
++T K EG + GAILGGG+ EE+EK R
Sbjct: 241 LEQLEFIHIHKTAKLLEGAV-----VLGAILGGGTDEEVEKLRR 279
>gi|6277254|dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton sublyratus]
Length = 368
Score = 42.0 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S + RI+R + E+ +A+G++G+V GQ ++ E+
Sbjct: 186 GDALLAFAFEHIAVST--LNVSPVRIVRGVGELAKAIGAEGLVAGQVVDICSEGLSEVDL 243
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GGG+ EE+EK
Sbjct: 244 EKLEFIHIHKTAKLLEGAVVLGAIMGGGTDEEVEK 278
>gi|427724764|ref|YP_007072041.1| farnesyl-diphosphate synthase [Leptolyngbya sp. PCC 7376]
gi|427356484|gb|AFY39207.1| farnesyl-diphosphate synthase [Leptolyngbya sp. PCC 7376]
Length = 301
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A + G + R+L+V++ + +A+G++G+V GQ +LQ +++ E
Sbjct: 122 DGLLSYAFEYVARTQ---GVPADRLLQVVIRLGQAVGAEGLVGGQVVDLQSEGKTDVSIE 178
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + G L GAIL G +I+K
Sbjct: 179 TLNFIHTHKTGALLEVCVTSGAILAGAENAKIQK 212
>gi|354558197|ref|ZP_08977453.1| Polyprenyl synthetase [Desulfitobacterium metallireducens DSM
15288]
gi|353548922|gb|EHC18366.1| Polyprenyl synthetase [Desulfitobacterium metallireducens DSM
15288]
Length = 288
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC---SQYVEM 59
D +L + EL+A P N+ R LRV+ E+ +A G +G+V GQ +L+ + +
Sbjct: 110 DGLLTYAFELIA---RPLPVNAERQLRVIQEVAQAAGPEGMVLGQVLDLEAEGKTLTLGE 166
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ ++ G + A G ILGGG+ +I+ R
Sbjct: 167 IEQIHQHKTGAMLVVSARMGGILGGGTEAQIQALTR 202
>gi|506378|gb|AAA96328.1| geranylgeranyl pyrophosphate synthase, partial [Arabidopsis
thaliana]
Length = 157
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL------QCSQYV 57
A+L E L +D +S +++R + E+ +++G++G+V GQ +L Q +
Sbjct: 45 ALLALAFEHLTEADV----SSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGL 100
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L A GA++GGG+ +EIEK
Sbjct: 101 EDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 135
>gi|158104429|gb|ABD92926.2| geranylgeranyl diphosphate synthase [Stevia rebaudiana]
Length = 361
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE---------LQC 53
DA+L E +A++ G + RI+R + E+ R++GS+G+V GQ + L
Sbjct: 181 DALLSLSFEHIATATK--GVSKDRIVRAIGELARSVGSEGLVAGQVVDILSEGADVGLDH 238
Query: 54 SQYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+Y+ + L GAI+GGGS ++IEK
Sbjct: 239 LEYIHI------HKTAMLLESSVVIGAIMGGGSDQQIEK 271
>gi|302142446|emb|CBI19649.3| unnamed protein product [Vitis vinifera]
Length = 301
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F E LA++ + G +S RI+ + E+ +++G++G+V GQ ++ + ++ +
Sbjct: 163 DSLLAFAFEHLATATS--GVSSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGLD 220
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEE 89
+ L GA+LGGGS EE
Sbjct: 221 QLEFIHIHKTAALLEAAVVLGALLGGGSDEE 251
>gi|392394416|ref|YP_006431018.1| geranylgeranyl pyrophosphate synthase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525494|gb|AFM01225.1| geranylgeranyl pyrophosphate synthase [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 289
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 3 DAMLPFGLELLASSDNPAGN-NSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+L + ELLA P G R LR + E+ +A G G+V GQ +L+ + +
Sbjct: 110 DALLTYAFELLA---QPMGGVEPQRQLRAIREVAQAAGPAGMVGGQVLDLEAEEKQLNLS 166
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ ++ G + A GAIL GG+ E+I+ R
Sbjct: 167 ELEQVHRLKTGAMLVVSARLGAILAGGTEEKIDALTR 203
>gi|402303522|ref|ZP_10822615.1| putative geranyltranstransferase [Selenomonas sp. FOBRC9]
gi|400378360|gb|EJP31217.1| putative geranyltranstransferase [Selenomonas sp. FOBRC9]
Length = 295
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLEL-LASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+L + L D PA R+LRV+ EM+RA G++G+V GQ +L+ +E
Sbjct: 117 DALLTLAFTMILRQQDVPAE----RLLRVVDEMSRAAGAEGMVGGQMLDLEAENRRISME 172
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L GAIL G S +++
Sbjct: 173 ELRRVHMGKTGALFRAALRSGAILAGASEQQL 204
>gi|405789932|gb|AFS28709.1| putative geranylgeranyl pyrophosphate synthase, partial [Olea
europaea]
Length = 251
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 18/100 (18%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ------- 55
DA+L + E +A + G S RI+RV+ E+ + +GS+G+V GQ ++ CS+
Sbjct: 93 DALLAYAFEHMAVATK--GVPSERIVRVIGELAKCIGSEGLVAGQVVDI-CSEGNSDVGL 149
Query: 56 -YVEM--TYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
++E ++T EG + GAILGG + +E+EK
Sbjct: 150 DHLEFIHIHKTAALLEGSV-----VLGAILGGANDQEVEK 184
>gi|145352919|ref|XP_001420781.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581016|gb|ABO99074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 312
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE--MT 60
DA+L E + G ++ ++LRV+V++ + +GS+G+V GQ ++ E +T
Sbjct: 129 DALLSHAFEYIGRETK--GVSADKVLRVIVDVGKCVGSEGLVGGQVVDIMSEGADEGTVT 186
Query: 61 YETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T K G L GAILGG S E+I K R
Sbjct: 187 IDTLKYIHAHKTGALLEVSVTAGAILGGASEEQIGKLER 225
>gi|443477457|ref|ZP_21067303.1| Farnesyltranstransferase [Pseudanabaena biceps PCC 7429]
gi|443017422|gb|ELS31868.1| Farnesyltranstransferase [Pseudanabaena biceps PCC 7429]
Length = 307
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E +A G + RIL+ + + A+ + G+V GQ +L+C ++T E
Sbjct: 127 DALLAYAFEFIAVQTK--GVPAERILKAIAHLGHAVAATGLVGGQVVDLECEGKSDVTAE 184
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEK 92
K L +C CGA+L G + +I++
Sbjct: 185 ILTFIHIHKTAALLESC-VICGALLAGANDTDIKR 218
>gi|13383239|dbj|BAB39470.1| putative GGPP synthase 3 [Lactuca indica var. laciniata]
Length = 127
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F + +AS+ G + R+L + E+ +++G++G+V GQ ++ + ++ +
Sbjct: 25 DSLLAFAFQHIASA--TVGASPERVLAAVGELAKSIGTEGLVAGQVVDIASTGAKDVGLD 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGGS ++EK
Sbjct: 83 QLEFIHIHKTAALLEAAVVLGAILGGGSDTQVEK 116
>gi|172035793|ref|YP_001802294.1| geranylgeranyl pyrophosphate synthase [Cyanothece sp. ATCC 51142]
gi|354555029|ref|ZP_08974332.1| Farnesyltranstransferase [Cyanothece sp. ATCC 51472]
gi|171697247|gb|ACB50228.1| geranylgeranyl pyrophosphate synthase [Cyanothece sp. ATCC 51142]
gi|353553183|gb|EHC22576.1| Farnesyltranstransferase [Cyanothece sp. ATCC 51472]
Length = 309
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E +A+ + ++ V+ + R +G+ G+V GQ +L+ ++T +
Sbjct: 129 DALLSYAFEYVATQTR--NVDLANLMDVIARLGRTVGAAGLVGGQVLDLESEGRADVTVD 186
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K G L GAIL G E+IE+ R
Sbjct: 187 TLKFIHIHKTGALLETSVVSGAILAGAKPEDIERLSR 223
>gi|67008257|emb|CAJ00342.1| putative geranylgerannylpyrophosphate synthase [Andrographis
paniculata]
Length = 141
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----- 57
DA+L F E LA++ N ++ + E++R +G++G+V GQ ++ CS+ +
Sbjct: 22 DALLAFAFEHLATATEDVPTN--MVVSAIGELSRCIGAEGLVAGQVVDI-CSEGISEVGL 78
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE--KKFR---GLIIKITKMMIRNSFC 111
E+ + L GAILGG + E+E +KF GL+ ++ ++ + C
Sbjct: 79 ELLEFIHLHKTAALLEGSVVLGAILGGATESEVERLRKFARCIGLLFQVVDDILDVTKC 137
>gi|297830700|ref|XP_002883232.1| hypothetical protein ARALYDRAFT_898426 [Arabidopsis lyrata subsp.
lyrata]
gi|297329072|gb|EFH59491.1| hypothetical protein ARALYDRAFT_898426 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCS----------QYVEMTYETYKKNEGGLHTCG 75
R+L ++EM RA+G++G+V GQ +L +++E + L
Sbjct: 193 RVLLAILEMARAVGTEGLVAGQAADLDGEGKSFDNDTGLKHLEF---IHIHKTAALLEAA 249
Query: 76 AACGAILGGGSVEEIEK 92
A GAI+GGGS EEIE+
Sbjct: 250 AVMGAIMGGGSDEEIER 266
>gi|167043397|gb|ABZ08099.1| putative Polyprenyl synthetase [uncultured marine microorganism
HF4000_APKG1C9]
Length = 575
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML G E+LA S + ++ + EM R V EGQ ++++ Q +T
Sbjct: 359 GDAMLAVGFEILAESPEIDADKLAFLVSTIGEMVRK-----VAEGQQDDIEFEQRNTVTE 413
Query: 62 ETY-----KKNEGGLHTCGAACGAILGGGSVEEIE 91
E Y K TC A GAIL G S E ++
Sbjct: 414 EDYIAMITGKTSAMFETC-ATTGAILAGASDEIVD 447
>gi|167043490|gb|ABZ08187.1| putative Polyprenyl synthetase [uncultured marine microorganism
HF4000_APKG2H5]
Length = 575
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DAML G E+LA S + ++ + EM R V EGQ ++++ Q +T
Sbjct: 359 GDAMLAVGFEILAESPEIDADKLAFLVSTIGEMVRK-----VAEGQQDDIEFEQRNTVTE 413
Query: 62 ETY-----KKNEGGLHTCGAACGAILGGGSVEEIE 91
E Y K TC A GAIL G S E ++
Sbjct: 414 EDYIAMITGKTSAMFETC-ATTGAILAGASDEIVD 447
>gi|224069436|ref|XP_002302977.1| predicted protein [Populus trichocarpa]
gi|222844703|gb|EEE82250.1| predicted protein [Populus trichocarpa]
Length = 314
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E +AS + ++R + E+ A+GS+GVV GQ ++ S+ E++ +
Sbjct: 134 DALLSLAFEHIASKTKNVSPDC--VVRAIAELGSAIGSRGVVAGQIVDID-SEGKEVSMK 190
Query: 63 T----YKKNEGGLHTCGAACGAILGG---GSVEEIEKKFRGL 97
T + L A CGAI+GG S+E + K R +
Sbjct: 191 TLEYIHVHKTAKLLEASAVCGAIMGGADDASIERLRKYARSI 232
>gi|409993924|ref|ZP_11277049.1| farnesyl-diphosphate synthase [Arthrospira platensis str. Paraca]
gi|291568862|dbj|BAI91134.1| geranylgeranyl pyrophosphate synthase [Arthrospira platensis
NIES-39]
gi|409935211|gb|EKN76750.1| farnesyl-diphosphate synthase [Arthrospira platensis str. Paraca]
Length = 316
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G R+L+V+ + RA+G+ G+V GQ ++ +++ E
Sbjct: 136 DGLLSYAFEFVATQTQ--GVPPERVLQVIGRLGRAVGATGLVGGQVVDIASEGLSDVSEE 193
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGAIL G + ++E+ R
Sbjct: 194 TLTFIHTHKTGALLEACVVCGAILAGANETDLERLSR 230
>gi|297736851|emb|CBI26052.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 33 EMTRAMGSQGVVEGQYNELQCSQYVEMTYE----TYKKNEGGLHTCGAACGAILGGGSVE 88
E+ R++GSQG+V GQ+ +L E+ E + G L A GA+LGGGS E
Sbjct: 101 ELARSIGSQGLVAGQFLDLSSEGSPEIGLEGLESIHINKAGPLLEASAVIGAMLGGGSSE 160
Query: 89 EIE--KKF 94
++E +KF
Sbjct: 161 QMEILRKF 168
>gi|10801558|dbj|BAB16692.1| GGPP synthase 2 [Hevea brasiliensis]
Length = 126
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A++ + R++R + E+ A+G+ G+V GQ +++ S+ ++T E
Sbjct: 25 DALLSFSFEHVAAATKNVSPD--RVVRAIAELGSAVGAAGLVAGQIVDIE-SEGKQVTLE 81
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L CGAI+GG E E+
Sbjct: 82 DLEYIHINKTSKLLEAAVVCGAIIGGADDESTER 115
>gi|284032149|ref|YP_003382080.1| polyprenyl synthetase [Kribbella flavida DSM 17836]
gi|283811442|gb|ADB33281.1| Polyprenyl synthetase [Kribbella flavida DSM 17836]
Length = 368
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY--------NELQC 53
DA+L ++L SS PA ++ ++L V Q +VEGQ N++
Sbjct: 152 GDALLSLAFDVLVSSGEPAADDGAKVLGQAV--------QELVEGQLADAHFEIRNDVTL 203
Query: 54 SQYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
S+ + M + G L C A GA+ GGG E+++
Sbjct: 204 SECLRMA----QLKTGALLGCSTALGAMFGGGRSEQVD 237
>gi|254409375|ref|ZP_05023156.1| polyprenyl synthetase superfamily [Coleofasciculus chthonoplastes
PCC 7420]
gi|196183372|gb|EDX78355.1| polyprenyl synthetase superfamily [Coleofasciculus chthonoplastes
PCC 7420]
Length = 309
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G + R+L+V+ + R +G+ G+V GQ +L+ ++ E
Sbjct: 129 DGLLAYAFEYVATQTQ--GVPAERVLQVIARLGRTVGAAGLVGGQVVDLESEGKSDIQEE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CG IL G + +IE+ R
Sbjct: 187 TLHYIHTHKTGALLETCVVCGGILAGATDADIERLSR 223
>gi|292670718|ref|ZP_06604144.1| geranyltranstransferase [Selenomonas noxia ATCC 43541]
gi|292647664|gb|EFF65636.1| geranyltranstransferase [Selenomonas noxia ATCC 43541]
Length = 291
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ---YVE 58
DA+L LL D PA + +LRV+ E++RA G++G+V GQ +LQ ++
Sbjct: 113 DALLTLAFTVLLRQKDVPAVS----LLRVVDEISRAAGAEGMVGGQVLDLQAENKTISLD 168
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L GAILGG S +++
Sbjct: 169 ELRRVHMGKTGALFHAALRSGAILGGASEQQL 200
>gi|282901609|ref|ZP_06309527.1| Polyprenyl synthetase [Cylindrospermopsis raciborskii CS-505]
gi|281193485|gb|EFA68464.1| Polyprenyl synthetase [Cylindrospermopsis raciborskii CS-505]
Length = 309
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L +L+A+ P R LRV+ M A G+ G+V GQ +L ++ E
Sbjct: 128 DGLLALSFQLVATQ-TPQTVPPERTLRVIARMGSASGAPGLVGGQVVDLASEGQSNISLE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L CG I+ G + ++I+K R
Sbjct: 187 TLNFIHNHKTAALLEASVVCGGIIAGAAPQDIQKLTR 223
>gi|13383253|dbj|BAB39477.1| putative GGPP synthase 2 [Youngia japonica]
Length = 127
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++ F + +AS+ G + R+L + E+ +++G++G+V GQ ++ + ++ E
Sbjct: 25 DSLFAFAFQHIASA--TVGASPARVLAAVGELAKSIGTEGLVAGQVVDIASTGVKDVGLE 82
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGGS ++E+
Sbjct: 83 QLEFIHIHKTAALLEAAVVLGAILGGGSDTQVEE 116
>gi|22535959|gb|AAN01134.1| geranyl diphosphate synthase [Abies grandis]
Length = 381
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 24 SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET----YKKNEGGLHTCGAACG 79
+ RILR++ E+ RA GS+GV+ GQ ++ + +T + L C CG
Sbjct: 219 ADRILRMVSELGRATGSEGVMGGQMVDIASEGDPSIDLQTLEWIHIHKTAMLLECSVVCG 278
Query: 80 AILGGGSVEEIEKKFR-----GLIIKI 101
AI+GG S IE+ R GL+ ++
Sbjct: 279 AIIGGASEIVIERARRYARCVGLLFQV 305
>gi|392426568|ref|YP_006467562.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus
acidiphilus SJ4]
gi|391356531|gb|AFM42230.1| geranylgeranyl pyrophosphate synthase [Desulfosporosinus
acidiphilus SJ4]
Length = 291
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY-VEMTY 61
D +L + E LA +P + LRV+ E+ A G G+V GQ ++ + + +T
Sbjct: 113 DGLLTYAFEFLA---DPILGQPEKQLRVIREVAAAAGKNGMVGGQVLDIAGEEKKLSLTE 169
Query: 62 --ETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G L A G IL GGS E+IE
Sbjct: 170 IEEIHKAKTGALLIASARLGGILAGGSEEQIE 201
>gi|67924905|ref|ZP_00518297.1| Polyprenyl synthetase [Crocosphaera watsonii WH 8501]
gi|67853239|gb|EAM48606.1| Polyprenyl synthetase [Crocosphaera watsonii WH 8501]
Length = 309
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 3 DAMLPFGLELLASS----DNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE 58
DA+L + E +A+ D P ++ V+ + R +G+ G+V GQ +L+ +
Sbjct: 129 DALLSYAFEYVATQTCNVDFP------NLIDVIARLGRTVGAAGLVGGQVLDLESEGRTD 182
Query: 59 MTYETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T +T K G L GAIL G E+IE+ R
Sbjct: 183 VTVDTLKFIHIHKTGALLETSVVSGAILAGAKPEDIERLSR 223
>gi|407979670|ref|ZP_11160480.1| geranyltranstransferase [Bacillus sp. HYC-10]
gi|407413682|gb|EKF35371.1| geranyltranstransferase [Bacillus sp. HYC-10]
Length = 296
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 3 DAMLPFGLELLAS--SDN-PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY--- 56
DA+L L+ S SD PA L+++ E+ ++ G+ G+V GQ+++++ Q
Sbjct: 116 DALLTESFRLITSQLSDRVPAEQK----LKIIDELVKSAGALGMVGGQFDDMEAEQKQIP 171
Query: 57 VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + + G L T A GA+L G S ++IEK
Sbjct: 172 LSELESIHARKTGKLLTFSVAAGAMLAGASNDDIEK 207
>gi|434391876|ref|YP_007126823.1| farnesyl-diphosphate synthase [Gloeocapsa sp. PCC 7428]
gi|428263717|gb|AFZ29663.1| farnesyl-diphosphate synthase [Gloeocapsa sp. PCC 7428]
Length = 308
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ + R+L+V+ + RA+G+ G+V GQ +L+ +++ +
Sbjct: 128 DGLLAYAFEYVAAKTE--NVPAPRVLQVISRLGRAVGAAGLVGGQVVDLESEGKADVSID 185
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T K L C ACGAIL G ++++ R
Sbjct: 186 TLNFIHNHKTAALLEAC-VACGAILAGAPEADLQRLTR 222
>gi|357038612|ref|ZP_09100409.1| Farnesyltranstransferase [Desulfotomaculum gibsoniae DSM 7213]
gi|355359404|gb|EHG07166.1| Farnesyltranstransferase [Desulfotomaculum gibsoniae DSM 7213]
Length = 296
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS--QYVEMT 60
DA+L LLA + R++RV+ E+ A G+ G++ GQ ++Q + + T
Sbjct: 115 DALLTLAFGLLAGVSQTGSFGADRVVRVIAEVAEAAGTAGLIGGQVVDMQSTGKSIDKQT 174
Query: 61 YE-TYKKNEGGLHTCGAACGAILGGGSVEEI 90
E + G L+ GAIL G + E++
Sbjct: 175 LEYIHVHKTGALYRASVRTGAILAGAAPEQL 205
>gi|167037514|ref|YP_001665092.1| polyprenyl synthetase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115928|ref|YP_004186087.1| polyprenyl synthetase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|326390206|ref|ZP_08211767.1| Polyprenyl synthetase [Thermoanaerobacter ethanolicus JW 200]
gi|392941055|ref|ZP_10306699.1| geranylgeranyl pyrophosphate synthase [Thermoanaerobacter
siderophilus SR4]
gi|166856348|gb|ABY94756.1| Polyprenyl synthetase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929019|gb|ADV79704.1| Polyprenyl synthetase [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|325993854|gb|EGD52285.1| Polyprenyl synthetase [Thermoanaerobacter ethanolicus JW 200]
gi|392292805|gb|EIW01249.1| geranylgeranyl pyrophosphate synthase [Thermoanaerobacter
siderophilus SR4]
Length = 294
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L G E+L + RIL+ E+ A G +G++ GQ ++ SQ E+TYE
Sbjct: 113 DGLLNLGYEVLVRHALEHPEDYERILKATNEIATASGCKGIIGGQVVDI-LSQNTELTYE 171
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEI 90
K G L GA + G + EEI
Sbjct: 172 ELKFMHEHKTGALIEASVCAGAYIAGATEEEI 203
>gi|416403979|ref|ZP_11687631.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Crocosphaera
watsonii WH 0003]
gi|357261577|gb|EHJ10825.1| Octaprenyl-diphosphate synthase / Dimethylallyltransferase /
Geranyltranstransferase (farnesyldiphosphate synthase) /
Geranylgeranyl pyrophosphate synthetase [Crocosphaera
watsonii WH 0003]
Length = 307
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 3 DAMLPFGLELLASS----DNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE 58
DA+L + E +A+ D P ++ V+ + R +G+ G+V GQ +L+ +
Sbjct: 127 DALLSYAFEYVATQTCNVDFP------NLIDVIARLGRTVGAAGLVGGQVLDLESEGRTD 180
Query: 59 MTYETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T +T K G L GAIL G E+IE+ R
Sbjct: 181 VTVDTLKFIHIHKTGALLETSVVSGAILAGAKPEDIERLSR 221
>gi|339319330|ref|YP_004679025.1| geranyltranstransferase [Candidatus Midichloria mitochondrii
IricVA]
gi|338225455|gb|AEI88339.1| geranyltranstransferase [Candidatus Midichloria mitochondrii
IricVA]
Length = 284
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMV--EMTRAMGSQGVVEGQYNELQCSQY-VEM 59
DA+L + E++AS N ILR+ + E+TRA+G +G++ GQ ++ +
Sbjct: 117 DALLTYAFEVIASDQA----NIDPILRIKIIQEITRAIGIKGMIGGQVIDITSQNMSSDD 172
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
E +K G L GAI+G S +E+
Sbjct: 173 LKEVHKLKTGALIEASCVAGAIMGHASSDEM 203
>gi|38455333|gb|AAR20832.1| geranylgeranyl diphosphate synthase [Taxus x media]
Length = 180
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E +A + + S R LRV+ E+ + + SQG+V GQ ++ + +
Sbjct: 80 DALLSFAFEHIAVATSKT-VPSDRTLRVISELGKTISSQGLVGGQVVDITSEGDANVDLK 138
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + L C G ILGG + +EI + R
Sbjct: 139 TLEWIHIHKTAVLLECSVVNGGILGGATEDEIARIRR 175
>gi|443323350|ref|ZP_21052357.1| geranylgeranyl pyrophosphate synthase [Gloeocapsa sp. PCC 73106]
gi|442786914|gb|ELR96640.1| geranylgeranyl pyrophosphate synthase [Gloeocapsa sp. PCC 73106]
Length = 309
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G R+++V++ ++ A+G++G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVATQTQ--GVPPERLIKVIIHLSHAVGAEGLVGGQVLDLESEGKTDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + G L GA L G + E++E+
Sbjct: 187 TLTFIHTHKTGALLEACVLSGADLAGANREDLER 220
>gi|3885426|gb|AAC77874.1| geranylgeranyl pyrophosphate synthase [Helianthus annuus]
Length = 356
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L F E ++S G + R+L + E+ +++G++G+V GQ ++ + ++ +
Sbjct: 174 DSLLAFAFEYVSSRTE--GASPARVLAAIGELAKSIGTEGLVAGQVVDIASTGGQDIGLD 231
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L GAILGGGS ++EK
Sbjct: 232 QLEFIHIHKTAALLEASVVLGAILGGGSDAQVEK 265
>gi|224077270|ref|XP_002305196.1| predicted protein [Populus trichocarpa]
gi|222848160|gb|EEE85707.1| predicted protein [Populus trichocarpa]
Length = 365
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L E +A N +S R+++ + E+ +GS+G+V GQ ++ S+ E++
Sbjct: 184 GDALLSLAFEHVAR--NTKNVSSDRVVQAIAELGSTVGSKGLVAGQIVDID-SEGKEVSL 240
Query: 62 ETYK----KNEGGLHTCGAACGAILGGG---SVEEIEKKFR--GLIIKI 101
T + L CGAI+GG SVE + K R GL+ ++
Sbjct: 241 STLEYIHVHKTAKLLEAAVVCGAIMGGADATSVERLRKYARSIGLLFQV 289
>gi|428772609|ref|YP_007164397.1| farnesyl-diphosphate synthase [Cyanobacterium stanieri PCC 7202]
gi|428686888|gb|AFZ46748.1| farnesyl-diphosphate synthase [Cyanobacterium stanieri PCC 7202]
Length = 294
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 3 DAMLPFGLELLASSDN--PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E +A PA N +L V+ +T+A+G++G+V GQ +L+C ++T
Sbjct: 114 DGLLTYAFEYVARETKGVPAEN----VLEVIKILTKAVGAEGLVGGQVMDLECEGKTDVT 169
Query: 61 YE----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L GA+L G + E++ +
Sbjct: 170 AEMLSFIHIHKTGALLEACVTSGAVLAGATQEDLSR 205
>gi|428224789|ref|YP_007108886.1| farnesyl-diphosphate synthase [Geitlerinema sp. PCC 7407]
gi|427984690|gb|AFY65834.1| farnesyl-diphosphate synthase [Geitlerinema sp. PCC 7407]
Length = 315
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 3 DAMLPFGLELLASSDN--PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E +AS PA R+L+V+ ++ RA+G+ G+V GQ +L+ +++
Sbjct: 135 DGLLAYSFEYIASQTRNVPAE----RVLQVVTQVARAVGAAGLVGGQVVDLESEGRSDVS 190
Query: 61 YET----YKKNEGGLHTCGAACGAILGGGSVE 88
ET + L GA+L G S E
Sbjct: 191 IETLNYIHTHKTAALLEASVVSGAVLAGASAE 222
>gi|320529116|ref|ZP_08030208.1| putative geranyltranstransferase [Selenomonas artemidis F0399]
gi|320138746|gb|EFW30636.1| putative geranyltranstransferase [Selenomonas artemidis F0399]
Length = 295
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+L +L D PA R+LRV+ E RA G++G+V GQ +L+ +E
Sbjct: 117 DALLTLAFTVILRQQDVPAE----RLLRVVDETGRAAGAEGMVGGQMLDLEAENRRISME 172
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L CGAIL G S ++
Sbjct: 173 ELRRVHMGKTGALFRAALRCGAILAGASERQL 204
>gi|319788992|ref|YP_004150625.1| Polyprenyl synthetase [Thermovibrio ammonificans HB-1]
gi|317113494|gb|ADU95984.1| Polyprenyl synthetase [Thermovibrio ammonificans HB-1]
Length = 294
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E+LA + + R ++V+ E+ RA G G+V GQ +L ++ E
Sbjct: 115 DALLNRAFEVLADWEF----DCNRKVKVISEIARASGMLGMVLGQQCDLDAEGRGDVPLE 170
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+K G L T G I GGGS EEI+
Sbjct: 171 ELLFIHKHKTGRLITASVVSGGITGGGSPEEID 203
>gi|433607837|ref|YP_007040206.1| Polyprenyl synthetase [Saccharothrix espanaensis DSM 44229]
gi|407885690|emb|CCH33333.1| Polyprenyl synthetase [Saccharothrix espanaensis DSM 44229]
Length = 346
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L L++LA S +PA + R+L + + + + ++Q ++ V M
Sbjct: 130 GDSLLTLALDVLAGSGHPAATQAIRVLSAATQRLNDGQAADLAFEERGDVQVAECVRMA- 188
Query: 62 ETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ GL A GA+ GGG+ +++E
Sbjct: 189 ---QNKTAGLIGASCALGALFGGGTADQVE 215
>gi|282895575|ref|ZP_06303709.1| Polyprenyl synthetase [Raphidiopsis brookii D9]
gi|281199415|gb|EFA74279.1| Polyprenyl synthetase [Raphidiopsis brookii D9]
Length = 309
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L E +A+ P R L+V+ M A G+ G+V GQ +L ++ E
Sbjct: 128 DGLLALSFEFVATQ-TPQTVPPDRTLQVIARMGSASGAPGLVGGQVVDLASEGQSNISLE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + L CG I+ G S ++I+K
Sbjct: 187 TLNFIHNHKTAALLEASVVCGGIIAGASPQDIQK 220
>gi|255568243|ref|XP_002525096.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
gi|223535555|gb|EEF37223.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
Length = 369
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 16/78 (20%)
Query: 25 GRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVE----------MTYETYKKNEGGLHTC 74
RI+R + E+ +A+G++G+V GQ ++ CS+ + ++T K EG +
Sbjct: 208 ARIVRAVGELAKAIGAEGLVAGQVVDI-CSEGLSEVGLEKLEFIHVHKTAKLLEGAV--- 263
Query: 75 GAACGAILGGGSVEEIEK 92
GAI+GGG+ EE+EK
Sbjct: 264 --VLGAIMGGGTDEEVEK 279
>gi|428300108|ref|YP_007138414.1| farnesyl-diphosphate synthase [Calothrix sp. PCC 6303]
gi|428236652|gb|AFZ02442.1| farnesyl-diphosphate synthase [Calothrix sp. PCC 6303]
Length = 308
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
D +L + E + + D PA R+L+V+ + RA+G+ G+V GQ +L+ + +
Sbjct: 128 DGLLAYAFEYIVEHTKDVPAE----RVLKVISRLGRAVGAAGLVGGQVVDLESEGKTDTS 183
Query: 61 YETY-----KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET K L C CG IL G S +++++ R
Sbjct: 184 LETLNFIHNHKTAALLEAC-VVCGGILAGVSEDDLQRLSR 222
>gi|291532853|emb|CBL05966.1| farnesyl-diphosphate synthase [Megamonas hypermegale ART12/1]
Length = 292
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++A+ N ++++ EM++A G++G+V GQ ++Q S+ ++ +
Sbjct: 114 DALLTMAFEIIATDKNVDAETK---IKIITEMSKAAGAEGMVGGQVIDMQ-SENKKIDIQ 169
Query: 63 TYKK----NEGGLHTCGAACGAILGG------GSVEEIEKKFRGLIIKIT 102
T K+ G L GAIL G ++ E ++F GL +IT
Sbjct: 170 TLKQMHAAKTGALFCAAIRSGAILAGADEKQLANLTEYARQF-GLAFQIT 218
>gi|308809942|ref|XP_003082280.1| geranylgeranyl diphosphate synthase (ISS) [Ostreococcus tauri]
gi|116060748|emb|CAL57226.1| geranylgeranyl diphosphate synthase (ISS) [Ostreococcus tauri]
Length = 345
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEMT 60
DA+L E + G ++ ++LRV+V++ + +GS+G+V GQ ++ + + +T
Sbjct: 162 DALLSHAFEYIGRETK--GASAEKVLRVIVDVGKCVGSEGLVGGQVVDIMSEGAGPENVT 219
Query: 61 YETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+T K G L GAILGG S E+I K R
Sbjct: 220 VDTLKYIHAHKTGALLEVSVTAGAILGGASEEQIGKLER 258
>gi|220906408|ref|YP_002481719.1| polyprenyl synthetase [Cyanothece sp. PCC 7425]
gi|219863019|gb|ACL43358.1| Polyprenyl synthetase [Cyanothece sp. PCC 7425]
Length = 320
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A G + +L+V+ + A+ + G+V GQ +L+C +++ E
Sbjct: 140 DGLLAYAFEYVAVKTQ--GVPAEWLLKVVARLGHAVAATGLVGGQVVDLECEGVKDVSVE 197
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGA L G S E ++K R
Sbjct: 198 TLNFIHAHKTGALLEASVLCGAYLTGASDEVLQKLSR 234
>gi|41059107|gb|AAR99082.1| geranylgeranyl pyrophosphate synthase [Plectranthus barbatus]
Length = 359
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYK----KNEGGLHTCGAACGAI 81
R++R +VE R +GS+G+V GQ ++ E+ E + L GAI
Sbjct: 199 RVVRAVVEFGRYIGSEGLVGGQVVDIHSEGLAEVGVEQLEYIHLHKTAALLEAAVVMGAI 258
Query: 82 LGGGSVEEIEK 92
LGG E +EK
Sbjct: 259 LGGADDEAVEK 269
>gi|374639385|gb|AEZ55681.1| geranyl diphosphate synthase large subunit [Salvia miltiorrhiza]
Length = 344
Score = 39.3 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L E +A + G+ RILR + ++ +++G++G+V GQ ++ E+
Sbjct: 162 GDALLSLAFEHVAVATR--GSAPERILRALGQLAKSIGAEGLVAGQVVDICSEGMAEVGL 219
Query: 62 E----TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ + L GAILGG EE+E+
Sbjct: 220 DHLEFIHLHKTAALLQGSVVMGAILGGAKEEEVER 254
>gi|238926867|ref|ZP_04658627.1| Farnesyltranstransferase [Selenomonas flueggei ATCC 43531]
gi|238885399|gb|EEQ49037.1| Farnesyltranstransferase [Selenomonas flueggei ATCC 43531]
Length = 291
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEM 59
D +L ++ N + + +LRV+ E++RA G++G+V GQ +L+ ++ +E
Sbjct: 113 DGLLTLAFTVILRQQNVSADT---LLRVVDEISRAAGAEGMVGGQVLDLRAEEHRISMEE 169
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGS 86
+ G L GAILGG S
Sbjct: 170 MRRVHMGKTGALFRAALRSGAILGGAS 196
>gi|375085374|ref|ZP_09732017.1| hypothetical protein HMPREF9454_00628 [Megamonas funiformis YIT
11815]
gi|374567392|gb|EHR38611.1| hypothetical protein HMPREF9454_00628 [Megamonas funiformis YIT
11815]
Length = 292
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++A+ N ++++ EM++A G++G+V GQ ++Q S+ ++ +
Sbjct: 114 DALLTMAFEIIATDKNVDAETK---VKIITEMSKAAGAEGMVGGQVIDMQ-SENKKIDIQ 169
Query: 63 TYKK----NEGGLHTCGAACGAILGG------GSVEEIEKKFRGLIIKIT 102
T K+ G L GAIL G ++ E ++F GL +IT
Sbjct: 170 TLKQMHAAKTGALFCAAIRSGAILAGADEKQLANLTEYARQF-GLAFQIT 218
>gi|422343993|ref|ZP_16424920.1| hypothetical protein HMPREF9432_00980 [Selenomonas noxia F0398]
gi|355377741|gb|EHG24950.1| hypothetical protein HMPREF9432_00980 [Selenomonas noxia F0398]
Length = 291
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ---YVE 58
DA+L LL D PA + +LRV+ ++RA G++G+V GQ +LQ ++
Sbjct: 113 DALLTLAFTVLLRQKDVPAAS----LLRVVDVISRAAGAEGMVGGQVLDLQAENKAISLD 168
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L GAILGG S +++
Sbjct: 169 ELRRVHMGKTGALFHAALRSGAILGGASEQQL 200
>gi|334127647|ref|ZP_08501552.1| geranyltranstransferase [Centipeda periodontii DSM 2778]
gi|333388960|gb|EGK60127.1| geranyltranstransferase [Centipeda periodontii DSM 2778]
Length = 291
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL---QCSQYVE 58
DA+L +L D PA +LRV+ E++RA G++G+V GQ +L C +E
Sbjct: 113 DALLTLAFTVILRQKDVPAEA----LLRVVDEISRAAGAEGMVGGQVLDLAAENCQITME 168
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L GAIL G S E++
Sbjct: 169 ELRRVHMGKTGALFHAALRSGAILAGASEEQL 200
>gi|397614405|gb|EJK62777.1| hypothetical protein THAOC_16595 [Thalassiosira oceanica]
Length = 207
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L E +A G + +I+ V+ + R++G++G+ GQ +L+C T +
Sbjct: 27 DSLLSTSFEHVARETK--GVPAEKIVDVIARLGRSVGAEGLAGGQVMDLECEARPGTTLD 84
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIE--KKF 94
K G L A GAILGG + E+E +KF
Sbjct: 85 DLKWIHIHKTGTLLQIAVAAGAILGGATPAEVEACEKF 122
>gi|376297785|ref|YP_005169015.1| polyprenyl synthetase [Desulfovibrio desulfuricans ND132]
gi|323460347|gb|EGB16212.1| Polyprenyl synthetase [Desulfovibrio desulfuricans ND132]
Length = 297
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKK----NEGGLHTCGAACGAI 81
R+LR + + RA GS G+V GQ +++ + + + KK G L T CGAI
Sbjct: 137 RVLRAIAVLARAAGSGGMVGGQAVDMELTGRTGVPLDELKKMHAMKTGALLTAACECGAI 196
Query: 82 LGGGSVEEIEKKFR 95
L G + +++ R
Sbjct: 197 LAGAAESDVDNARR 210
>gi|325516280|gb|ADZ24718.1| geranylgeranyl pyrophosphate synthase 1 [Solanum pennellii]
Length = 365
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVE 58
DA+L E +A+ R+++ + E+ A+GS+G+V GQ +L E
Sbjct: 185 DALLSLAFEHVATKTQNVAPQ--RVVQAIGELGSAVGSEGLVAGQIVDLASEGKQVSLTE 242
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ Y ++ L CGAI+GGG+ ++E+
Sbjct: 243 LEY-IHQHKTAKLLEAAVVCGAIMGGGNEVDVER 275
>gi|307105633|gb|EFN53881.1| hypothetical protein CHLNCDRAFT_31906 [Chlorella variabilis]
Length = 304
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 19/101 (18%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-------- 54
DA+L E +A G + R+L+V+VE+ +A+GS+G+V GQ +++
Sbjct: 122 DALLSLSFEYIARETR--GVAADRVLQVIVEVGKAVGSEGLVAGQAVDIKSEGAGESVGL 179
Query: 55 ---QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
QY+ ++ L GAILGG + ++++
Sbjct: 180 DTLQYI------HEHKTAVLLEAAVVSGAILGGATEVDVDR 214
>gi|218245046|ref|YP_002370417.1| polyprenyl synthetase [Cyanothece sp. PCC 8801]
gi|257058070|ref|YP_003135958.1| polyprenyl synthetase [Cyanothece sp. PCC 8802]
gi|218165524|gb|ACK64261.1| Polyprenyl synthetase [Cyanothece sp. PCC 8801]
gi|256588236|gb|ACU99122.1| Polyprenyl synthetase [Cyanothece sp. PCC 8802]
Length = 309
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E A+ + ++ V+ + R +G G+V GQ +L+ ++T +
Sbjct: 129 DGLLAYAFEYAATQTRNV--DPHNLINVLGRLGRTVGPAGLVGGQVLDLESEGKPDITVD 186
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
T K G L GAIL GGS E+I++
Sbjct: 187 TLKFIHTHKTGALLETSVVSGAILAGGSTEDIQR 220
>gi|83590356|ref|YP_430365.1| farnesyl-diphosphate synthase [Moorella thermoacetica ATCC 39073]
gi|83573270|gb|ABC19822.1| farnesyl-diphosphate synthase [Moorella thermoacetica ATCC 39073]
Length = 297
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMTY 61
DA+L E+L S PA RILR E+ + GSQG++ GQ +++ Q V +
Sbjct: 118 DALLTLAFEVL--SRIPATIPPERILRATRELAASAGSQGLIGGQVVDMEAEGQPVTLEK 175
Query: 62 ETYKKNEGGLHTCGA---AC---GAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
Y N H G+ AC G ILGG E++ R GL +IT ++
Sbjct: 176 VNYIHN----HKTGSLIRACLRLGGILGGAGEEQLALLTRYGEALGLAFQITDDIL 227
>gi|297847270|ref|XP_002891516.1| hypothetical protein ARALYDRAFT_891852 [Arabidopsis lyrata subsp.
lyrata]
gi|297337358|gb|EFH67775.1| hypothetical protein ARALYDRAFT_891852 [Arabidopsis lyrata subsp.
lyrata]
Length = 337
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 21/105 (20%)
Query: 2 ADAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
A+A++ +E LAS+ G S R+LR + EM RA+G +G+V GQ +L + M+
Sbjct: 150 ANALMSLAVEQTLASTS--LGVTSERVLRAVQEMARAVGIEGLVAGQAADLAGGR---MS 204
Query: 61 YETYKKNEG-------GLHTC------GAACGAILGGGSVEEIEK 92
+ET ++EG +H A GAI+GGGS EEIE+
Sbjct: 205 FET--EDEGLRYLEFIHIHKTAVLVEAAAVVGAIMGGGSDEEIER 247
>gi|39996864|ref|NP_952815.1| trans-isoprenyl diphosphate synthase [Geobacter sulfurreducens PCA]
gi|409912286|ref|YP_006890751.1| trans-isoprenyl diphosphate synthase [Geobacter sulfurreducens
KN400]
gi|39983752|gb|AAR35142.1| trans-isoprenyl diphosphate synthase [Geobacter sulfurreducens PCA]
gi|298505877|gb|ADI84600.1| trans-isoprenyl diphosphate synthase [Geobacter sulfurreducens
KN400]
Length = 297
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L L++S A S R+L V+ E+ GS+G+V GQ +++ E+
Sbjct: 115 DALLTEAFILISSPSYAAAVGSDRLLPVIHEIALCAGSRGMVGGQVVDMESEGNKEIDLA 174
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+LGG + + ++ R
Sbjct: 175 TVQYIHTRKTGALIKASIKAGAVLGGANADAVKAVTR 211
>gi|345861767|ref|ZP_08814019.1| geranyltranstransferase [Desulfosporosinus sp. OT]
gi|344325160|gb|EGW36686.1| geranyltranstransferase [Desulfosporosinus sp. OT]
Length = 277
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ---CSQYVEM 59
DA+L + E LA D G S R LR++ E+ A G G+V GQ ++ + +
Sbjct: 99 DALLTYAFEFLA--DEGLGQ-SERQLRIIREVAVAAGKVGMVGGQVADVAGEGKTLTLNE 155
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G L T A G IL GG+ E+++
Sbjct: 156 IEEIHKAKTGALLTVSARLGGILAGGTEEQVK 187
>gi|433654909|ref|YP_007298617.1| geranylgeranyl pyrophosphate synthase [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293098|gb|AGB18920.1| geranylgeranyl pyrophosphate synthase [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 293
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L +G E+L + N ILR + E+ A G G++ GQ +L S+ +T E
Sbjct: 113 DALLNYGFEVLIHHALDSAN-CQNILRAIEEIAHAAGCHGMIGGQVVDL-LSENKNITEE 170
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
K G L GAI+GG E I+K
Sbjct: 171 ELKFMHDHKTGALIKASVVAGAIMGGADDETIKK 204
>gi|94264970|ref|ZP_01288741.1| Polyprenyl synthetase [delta proteobacterium MLMS-1]
gi|93454573|gb|EAT04851.1| Polyprenyl synthetase [delta proteobacterium MLMS-1]
Length = 315
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMT- 60
D +L F ELLA G LR++ + A+G +G+V GQ +++ + +E+
Sbjct: 134 DGLLSFAFELLARPLGEHGPGPAAQLRLLATVAAAVGPRGMVGGQVLDIEAEGRRLELDE 193
Query: 61 -YETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
+ ++ G L T GAI GG S +++ R GL +I ++
Sbjct: 194 LQQIHRHKTGALITAAVQAGAIGGGASETQLQALTRYGQQTGLAFQIVDDLL 245
>gi|350538439|ref|NP_001234087.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum]
gi|82547880|gb|ABB82554.1| geranylgeranyl pyrophosphate synthase 1 [Solanum lycopersicum]
Length = 365
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVE 58
DA+L E +A+ R+++ + E+ A+GS+G+V GQ +L E
Sbjct: 185 DALLSLAFEHVATKTQNVPPQ--RVVQAIGELGSAVGSEGLVAGQIVDLASEGKQVSLTE 242
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ Y + K L CGAI+GGG+ ++E+
Sbjct: 243 LEYIHHHKT-SKLLEAAVVCGAIMGGGNEVDVER 275
>gi|67008259|emb|CAJ00343.1| putative geranylgerannylpyrophosphate synthase [Andrographis
paniculata]
Length = 140
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVE 58
DA+L +A + R++R + E+ A+GS+G+V GQ +L E
Sbjct: 22 DALLSLAFNHVA--EKTKNVEHCRVVRAIAELALAIGSEGLVAGQIVDLDSEGEKISLNE 79
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ Y K L A CG ILGGG E+E
Sbjct: 80 LEYIHVHKT-SMLLEAAAVCGGILGGGESTEVE 111
>gi|166364196|ref|YP_001656469.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
NIES-843]
gi|166086569|dbj|BAG01277.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
NIES-843]
Length = 309
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ + +++ E
Sbjct: 129 DGLLAYAFEYVATQTRNV--PPLQILEVIARLGRTVGAAGLVGGQVLDLESAGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKAEDIAKLAR 223
>gi|345017599|ref|YP_004819952.1| polyprenyl synthetase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032942|gb|AEM78668.1| Polyprenyl synthetase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 294
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L G E+L + RIL+ E+ A G +G++ GQ ++ SQ E+TYE
Sbjct: 113 DGLLNLGYEVLVRHALEHPEDYERILKATNEIATASGCKGIIGGQVVDI-LSQNTELTYE 171
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEI 90
K G L GA + + EEI
Sbjct: 172 ELKFMHEHKTGALIEASVCAGAYIASATEEEI 203
>gi|13383247|dbj|BAB39474.1| putative GGPP synthase 3 [Metaplexis japonica]
Length = 127
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----- 57
DA+L F E + ++ G +S +++RV+ E+ + +GS+G+V GQ ++ CS+ +
Sbjct: 25 DALLAFAFEHIVTATK--GASSEQLVRVIEELAKCIGSEGLVAGQVVDI-CSEGISDVGL 81
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGG + +I K
Sbjct: 82 EHLEFIHLHKTAALLEGSVVLGAILGGANDVQISK 116
>gi|425467096|ref|ZP_18846380.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9809]
gi|389830220|emb|CCI27968.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9809]
Length = 326
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ + +++ E
Sbjct: 146 DGLLAYAFEYVATQTRNV--PPLQILEVIARLGRTVGAAGLVGGQVLDLESAGKPDISAE 203
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 204 TLGFIHTQKTGALLETSVVSGAVLAGAKAEDIAKLAR 240
>gi|116748856|ref|YP_845543.1| polyprenyl synthetase [Syntrophobacter fumaroxidans MPOB]
gi|116697920|gb|ABK17108.1| farnesyl-diphosphate synthase [Syntrophobacter fumaroxidans MPOB]
Length = 296
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGR-ILRVMVEMTRAMGSQGVVEGQYNELQC-SQYVEMT 60
DA+L + ++ D G+ R IL V+ + RA G +G++ GQ +L+C ++ V++
Sbjct: 117 DALLTEAFDFVSKMD---GDIPPRKILAVVATLVRASGYRGMIGGQVIDLECENRTVDLA 173
Query: 61 YETYKK--NEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
Y G L + GA+LGGGS ++ R GL +IT ++
Sbjct: 174 TVEYMHIHKTGALLSASLEVGALLGGGSDAQVSSLKRYGHHLGLAFQITDDLL 226
>gi|88910043|gb|ABD57975.1| geranyl diphosphate synthase [Arnebia euchroma]
Length = 338
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQ------YVEMTYETYKKNEGGLHTCGAACG 79
R++R + EM GS+G GQ +L CS +E + + G L G
Sbjct: 177 RLVRALTEMAILTGSKGAAAGQIADL-CSSGEDFNVSIEQLEHIHMQKTGTLCEGSVVSG 235
Query: 80 AILGGGSVEEIEK--KFR---GLIIKIT 102
AI+GG S EEIEK KF GL+ +I
Sbjct: 236 AIIGGASEEEIEKLRKFSKCIGLMFQIV 263
>gi|147677529|ref|YP_001211744.1| geranylgeranyl pyrophosphate synthase [Pelotomaculum
thermopropionicum SI]
gi|146273626|dbj|BAF59375.1| geranylgeranyl pyrophosphate synthase [Pelotomaculum
thermopropionicum SI]
Length = 294
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS--QYVEMT 60
DA+L ELLA++D N I+RV+ E A G+ G++ GQ + + + E T
Sbjct: 116 DALLTLAFELLANNDRARPEN---IVRVIREAAAAAGTMGLIGGQVVDTFSAGKEIDEST 172
Query: 61 YE-TYKKNEGGLHTCGAACGAILGGGSVEEI 90
E ++ G L+ GA+L G E++
Sbjct: 173 LEYIHRHKTGALYRFSVRAGAMLAGAQEEQL 203
>gi|452852192|ref|YP_007493876.1| Polyprenyl synthetase [Desulfovibrio piezophilus]
gi|451895846|emb|CCH48725.1| Polyprenyl synthetase [Desulfovibrio piezophilus]
Length = 299
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L L++++ G + R+LR + + A G+ G+V GQ +++ + + E
Sbjct: 116 DGLLTEAFGLMSTASIVKGLPADRVLRAIAVLAHAAGASGMVGGQAVDMELTGGTSVALE 175
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ G L T CGAIL G + +IE
Sbjct: 176 QLRIMHAMKTGALITAACECGAILSGSTEADIE 208
>gi|428203147|ref|YP_007081736.1| geranylgeranyl pyrophosphate synthase [Pleurocapsa sp. PCC 7327]
gi|427980579|gb|AFY78179.1| geranylgeranyl pyrophosphate synthase [Pleurocapsa sp. PCC 7327]
Length = 309
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ RIL V+ + R +G+ G+V GQ +L+ +++ +
Sbjct: 129 DGLLAYAFEYVAAQTQNVPPQ--RILDVIARLGRTVGAAGLVGGQVLDLESEGKSDISVD 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + G L GA+L G S +EI++
Sbjct: 187 TLTFIHTHKTGALLETSVVSGAMLAGASDDEIQR 220
>gi|72382520|ref|YP_291875.1| polyprenyl synthetase [Prochlorococcus marinus str. NATL2A]
gi|72002370|gb|AAZ58172.1| farnesyl-diphosphate synthase [Prochlorococcus marinus str. NATL2A]
Length = 299
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++ S G S R+L+++ E++ A G+ G+V GQ +L C + E+ E
Sbjct: 120 DALLTRAFEMV--SIRTEGIPSERLLKIIGELSLAAGAPGLVGGQVVDLDC-EGKEVDLE 176
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
T + G L CGA++GG + +E
Sbjct: 177 TLEYIHLHKTGALLKACVTCGALIGGADEKLLE 209
>gi|313896583|ref|ZP_07830132.1| geranyltranstransferase [Selenomonas sp. oral taxon 137 str. F0430]
gi|312974768|gb|EFR40234.1| geranyltranstransferase [Selenomonas sp. oral taxon 137 str. F0430]
Length = 295
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLE-LLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+L +L D PA R+LR++ E++R+ G++G+V GQ +L+ +E
Sbjct: 117 DALLTLAFTVILRQQDVPAE----RLLRIVDEISRSAGAEGMVGGQMLDLEAENRRISME 172
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ G L GAIL G S +++
Sbjct: 173 ELQRVHMGKTGALFRAALRSGAILAGASEQQL 204
>gi|225174881|ref|ZP_03728878.1| Polyprenyl synthetase [Dethiobacter alkaliphilus AHT 1]
gi|225169521|gb|EEG78318.1| Polyprenyl synthetase [Dethiobacter alkaliphilus AHT 1]
Length = 293
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEMT 60
D++L E LA+ + A ++R+ + +A G G++ GQ +L + Q T
Sbjct: 113 DSLLTLAFETLAA-EATAYFAPATVVRLTEALGKAAGMSGMIGGQVVDLLSEGKQVNAAT 171
Query: 61 YE-TYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ ++ G L TC GAI+GG S+EE+++
Sbjct: 172 LDYIHRHKTGALFTCCIKSGAIMGGASLEEMQR 204
>gi|304316765|ref|YP_003851910.1| polyprenyl synthetase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778267|gb|ADL68826.1| Polyprenyl synthetase [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 293
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L +G E+L + N ILR E+ A G G++ GQ +L S+ +T E
Sbjct: 113 DALLNYGFEVLIHHALDSAN-CQNILRATEEIAHAAGCHGMIGGQVVDL-LSENKNITEE 170
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
K G L GAI+GG E I+K
Sbjct: 171 ELKFMHDHKTGALIKASVVAGAIMGGADDETIKK 204
>gi|85859630|ref|YP_461832.1| dimethylallyltransferase / geranyltranstransferase / geranylgeranyl
pyrophosphate synthetase [Syntrophus aciditrophicus SB]
gi|85722721|gb|ABC77664.1| dimethylallyltransferase / geranyltranstransferase / geranylgeranyl
pyrophosphate synthetase [Syntrophus aciditrophicus SB]
Length = 308
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEM 59
DA+L EL+ +D G +LRV+ E+ A G+ G+V GQ +L+ ++
Sbjct: 127 DALLTEAFELMTRTDFHTGLAPEILLRVIREIAAAAGAFGMVGGQVEDLRAEGKPGNLDT 186
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ + G + GAIL GGS + +
Sbjct: 187 LNRIHNRKTGAMIVVSLRAGAILSGGSEQAV 217
>gi|224069444|ref|XP_002302978.1| predicted protein [Populus trichocarpa]
gi|222844704|gb|EEE82251.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 18 NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET----YKKNEGGLHT 73
N +S R+++ + E+ A+GS+G+V GQ +++ S+ E++ T + L
Sbjct: 120 NTKNVSSDRVVQALAELGSAVGSKGLVAGQVVDIE-SEGKEVSLSTLEYIHVHKTAKLLE 178
Query: 74 CGAACGAILGGG---SVEEIEKKFR--GLIIKITKMMI 106
CGAI+GG SVE + K R GL+ ++ ++
Sbjct: 179 AAVVCGAIMGGADATSVERLRKYARSIGLLFQVVDDIL 216
>gi|304436640|ref|ZP_07396609.1| geranyltranstransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370336|gb|EFM23992.1| geranyltranstransferase [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 291
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEM 59
D +L ++ + + + +LRV+ E++RA G++G+V GQ +L+ ++ +E
Sbjct: 113 DGLLTLAFTVILRQQDVSADT---LLRVVDEISRAAGAEGMVGGQVLDLRAEEHRISMEE 169
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGS 86
+ G L GAILGG S
Sbjct: 170 MRRVHMGKTGALFRAALRSGAILGGAS 196
>gi|258515780|ref|YP_003192002.1| polyprenyl synthetase [Desulfotomaculum acetoxidans DSM 771]
gi|257779485|gb|ACV63379.1| Polyprenyl synthetase [Desulfotomaculum acetoxidans DSM 771]
Length = 296
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL-QCSQYVEM-T 60
DA+L +LLA G ++RV+ +++ A G+ G++ GQ ++ +Q ++ T
Sbjct: 115 DALLTMSFQLLAGLSGRNGIAPADVVRVIADISAAAGTTGLIGGQVVDIVSANQEIDAGT 174
Query: 61 YE-TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKITKMMI 106
E + K G L GA+L G EE++ + GL +IT ++
Sbjct: 175 LEYIHTKKTGALFRAAIRSGAVLSGADDEELKSLTNYAEHFGLAFQITDDIL 226
>gi|124026221|ref|YP_001015337.1| polyprenyl synthetase [Prochlorococcus marinus str. NATL1A]
gi|123961289|gb|ABM76072.1| Polyprenyl synthetase [Prochlorococcus marinus str. NATL1A]
Length = 299
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++ S G S R+L+++ E++ A G+ G+V GQ +L C + E+ E
Sbjct: 120 DALLTRAFEMV--SIRTEGIPSERLLKIIGELSLAAGAPGLVGGQVVDLDC-EGKEVDLE 176
Query: 63 TYKKNEGGLHTCGA------ACGAILGGGS 86
T + LH GA CGA++GG
Sbjct: 177 TLEYIH--LHKTGALLKACVTCGALIGGAD 204
>gi|148264230|ref|YP_001230936.1| polyprenyl synthetase [Geobacter uraniireducens Rf4]
gi|146397730|gb|ABQ26363.1| farnesyl-diphosphate synthase [Geobacter uraniireducens Rf4]
Length = 297
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L L++ + A +LRV+ E++ GS G+V GQ +++ EM
Sbjct: 115 DALLTEAFILMSRVEPSASLPPEAVLRVIQEISHCAGSHGMVGGQVVDMESEGKAEMDLA 174
Query: 63 T----YKKNEGGLHTCGAACGAILGGGS 86
T + G L GAILGG
Sbjct: 175 TVQYIHTHKTGALIKASVKAGAILGGAD 202
>gi|425457244|ref|ZP_18836950.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9807]
gi|389801481|emb|CCI19370.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9807]
Length = 309
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVAT--QTLNVPPVQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLSFIHTQKTGALLETSVVSGAVLAGAKAEDIAKLAR 223
>gi|169831187|ref|YP_001717169.1| polyprenyl synthetase [Candidatus Desulforudis audaxviator MP104C]
gi|169638031|gb|ACA59537.1| Polyprenyl synthetase [Candidatus Desulforudis audaxviator MP104C]
Length = 295
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ-YNELQCSQYV-EMTY 61
A+ E+LA G + RIL V+ E+ A G+ G++ GQ + + S+ V E
Sbjct: 115 ALFALAFEVLAGCRRDGGLAAERILAVVEEVAAACGTAGLIGGQALDVVSVSRTVSEAEL 174
Query: 62 E-TYKKNEGGLHTCGAACGAILGGGSVEEIEK-----KFRGLIIKITKMMI 106
E ++ G L GA+LGG S ++E+ + GL +IT ++
Sbjct: 175 EAVHRAKTGALFRAAVRAGAVLGGASPVQLERLTVFAEHFGLAFQITDDIL 225
>gi|284928678|ref|YP_003421200.1| farnesyl-diphosphate synthase [cyanobacterium UCYN-A]
gi|284809137|gb|ADB94842.1| farnesyl-diphosphate synthase [cyanobacterium UCYN-A]
Length = 309
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLAS-SDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L + E +A+ + N + N ++ V+ + R +G+ G+V GQ +L+ +T
Sbjct: 129 DALLSYAFEHVATQTHNVSLTN---LVDVIARLGRTVGAAGLVGGQVLDLESEGKSNITS 185
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
+ K G L GAIL G ++E+IE+
Sbjct: 186 DILKFIHVHKTGALLETSVVSGAILAGANLEDIER 220
>gi|328952416|ref|YP_004369750.1| farnesyltranstransferase [Desulfobacca acetoxidans DSM 11109]
gi|328452740|gb|AEB08569.1| Farnesyltranstransferase [Desulfobacca acetoxidans DSM 11109]
Length = 296
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 30 VMVEMTRAMGSQGVVEGQYNELQC---SQYVEMTYETYKKNEGGLHTCGAACGAILGGGS 86
V+ + RA G QG+V GQ +L +E ++ G L T GA+LGGGS
Sbjct: 142 VVQTIARAAGYQGMVGGQMADLLAEGQPSTLEQVEAIHRLKTGALLTASVRSGALLGGGS 201
Query: 87 VEEIE------KKFRGLIIKITKMMI 106
+I +KF GLI +IT ++
Sbjct: 202 ARDILALTHYGEKF-GLIFQITDDLL 226
>gi|325294212|ref|YP_004280726.1| polyprenyl synthetase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325064660|gb|ADY72667.1| Polyprenyl synthetase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 294
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E+L+ + + R ++V+ E+++A G G+V GQ ++ ++T E
Sbjct: 115 DALLNRAFEVLSQWNF----DCDRKIKVIEEISKASGMLGMVLGQQCDMDAEGRKDVTLE 170
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEI 90
++ G L T G I GGGS EEI
Sbjct: 171 ELLFIHRHKTGRLITASVVSGGITGGGSEEEI 202
>gi|375332057|gb|AFA52568.1| farnesyltransferase [Vaucheria litorea]
Length = 349
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L E++A + G ++ R++ V+ + +G G+ GQ +L+ + T
Sbjct: 168 GDALLSKSFEIVAK--HTKGVDAERVVDVLARLGECVGEVGLAGGQAMDLELEGKEDTTL 225
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
E +K G L GA+LGG E+E
Sbjct: 226 EQLRWIHKHKTGALLKAACTTGAVLGGAEPSEVE 259
>gi|62959219|gb|AAY23717.1| farnesyl diphosphate synthase [Synechococcus sp. CCMP1768]
Length = 145
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVE- 58
DAML E++A S++ PA R+LRV+ E+ G+ G+V GQ +L+ Q V+
Sbjct: 33 DAMLSRAFEMVAVRSANVPAD----RLLRVVGELALVSGAPGLVGGQVVDLESEGQAVDL 88
Query: 59 --MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ Y K L C GA++GG + E+++
Sbjct: 89 ETLEYIHLHKTAALLRAC-VVTGALIGGANDEQLQ 122
>gi|223997332|ref|XP_002288339.1| geranylgeranyl pyrophosphate synthetase [Thalassiosira pseudonana
CCMP1335]
gi|220975447|gb|EED93775.1| geranylgeranyl pyrophosphate synthetase [Thalassiosira pseudonana
CCMP1335]
Length = 339
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L E +A G ++ +I+ V+ + +++G++G+ GQ +L+C T
Sbjct: 158 GDSLLSTSFEHVARETK--GVSAEKIVDVIARLGKSVGAEGLAGGQVMDLECEAKPGTTL 215
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEI 90
+ K L A GA+LGG + EE+
Sbjct: 216 DDLKWIHIHKTATLLQVAVASGAVLGGATPEEV 248
>gi|124022642|ref|YP_001016949.1| polyprenyl synthetase [Prochlorococcus marinus str. MIT 9303]
gi|123962928|gb|ABM77684.1| Polyprenyl synthetase [Prochlorococcus marinus str. MIT 9303]
Length = 306
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++A G R+L+V+ E++ G+ G+V GQ +L+C + E+ E
Sbjct: 127 DALLTRSFEMVALRSK--GVAPERLLKVVGELSLVAGAPGLVGGQVVDLEC-EGKEVDLE 183
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
T + G L + CGA++GG + I+
Sbjct: 184 TLEFIHLHKTGALLSACVICGALIGGAEDDLID 216
>gi|384252734|gb|EIE26210.1| Polyprenyl synthetase [Coccomyxa subellipsoidea C-169]
Length = 289
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT-Y 61
DA+L E + G RI+RV+ E+ +A G++G+V GQ +++ E
Sbjct: 107 DALLCLAFEYICRETR--GVAPERIVRVVCEVGKATGAEGLVAGQIVDIKSEGMAEQVGL 164
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
ET ++ L CGA++GG ++E+
Sbjct: 165 ETLQYIHEHKTAALLEASVVCGALVGGAGEPDVER 199
>gi|33863380|ref|NP_894940.1| polyprenyl synthetase [Prochlorococcus marinus str. MIT 9313]
gi|33640829|emb|CAE21284.1| Polyprenyl synthetase [Prochlorococcus marinus str. MIT 9313]
Length = 306
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L E++A G R+L+V+ E++ G+ G+V GQ +L+C + E+ E
Sbjct: 127 DALLTRSFEMVAL--RSPGVPPERLLKVVGELSLVAGAPGLVGGQVVDLEC-EGKEVDLE 183
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
T + G L + CGA++GG + I+
Sbjct: 184 TLEFIHLHKTGALLSACVICGALIGGAEDDLID 216
>gi|15222767|ref|NP_175376.1| geranylgeranyl pyrophosphate synthase 1 [Arabidopsis thaliana]
gi|85540951|sp|O22043.2|GGPP6_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase 6,
mitochondrial; Short=GGPP synthase 6; Short=GGPS6;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 6;
AltName: Full=Dimethylallyltranstransferase 6; AltName:
Full=Farnesyl diphosphate synthase 6; AltName:
Full=Farnesyltranstransferase 6; AltName:
Full=Geranyltranstransferase 6; Flags: Precursor
gi|5430748|gb|AAD43148.1|AC007504_3 geranyl geranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|40823199|gb|AAR92266.1| At1g49530 [Arabidopsis thaliana]
gi|45752710|gb|AAS76253.1| At1g49530 [Arabidopsis thaliana]
gi|332194318|gb|AEE32439.1| geranylgeranyl pyrophosphate synthase 1 [Arabidopsis thaliana]
Length = 336
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQ-----------YNELQCSQYVEMTYETYKKNEG 69
G S R+LR + EM RA+G++G+V GQ NE +Y+E+ + +K
Sbjct: 167 GVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMH-VHKTAVL 225
Query: 70 GLHTCGAACGAILGGGSVEEIEK 92
A GAI+GGGS EEIE+
Sbjct: 226 V--EAAAVVGAIMGGGSDEEIER 246
>gi|325913420|ref|ZP_08175786.1| polyprenyl synthetase [Lactobacillus iners UPII 60-B]
gi|325477189|gb|EGC80335.1| polyprenyl synthetase [Lactobacillus iners UPII 60-B]
Length = 288
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|309805530|ref|ZP_07699575.1| polyprenyl synthetase [Lactobacillus iners LactinV 09V1-c]
gi|308165181|gb|EFO67419.1| polyprenyl synthetase [Lactobacillus iners LactinV 09V1-c]
Length = 288
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|259501558|ref|ZP_05744460.1| geranyltranstransferase [Lactobacillus iners DSM 13335]
gi|302191468|ref|ZP_07267722.1| geranyltranstransferase [Lactobacillus iners AB-1]
gi|309804209|ref|ZP_07698286.1| polyprenyl synthetase [Lactobacillus iners LactinV 11V1-d]
gi|309806895|ref|ZP_07700881.1| polyprenyl synthetase [Lactobacillus iners LactinV 03V1-b]
gi|309808828|ref|ZP_07702713.1| polyprenyl synthetase [Lactobacillus iners LactinV 01V1-a]
gi|312874432|ref|ZP_07734462.1| polyprenyl synthetase [Lactobacillus iners LEAF 2052A-d]
gi|325911777|ref|ZP_08174181.1| polyprenyl synthetase [Lactobacillus iners UPII 143-D]
gi|329919888|ref|ZP_08276826.1| polyprenyl synthetase [Lactobacillus iners SPIN 1401G]
gi|349612308|ref|ZP_08891529.1| hypothetical protein HMPREF1027_00956 [Lactobacillus sp. 7_1_47FAA]
gi|259167076|gb|EEW51571.1| geranyltranstransferase [Lactobacillus iners DSM 13335]
gi|308163612|gb|EFO65882.1| polyprenyl synthetase [Lactobacillus iners LactinV 11V1-d]
gi|308166713|gb|EFO68906.1| polyprenyl synthetase [Lactobacillus iners LactinV 03V1-b]
gi|308167954|gb|EFO70087.1| polyprenyl synthetase [Lactobacillus iners LactinV 01V1-a]
gi|311090044|gb|EFQ48458.1| polyprenyl synthetase [Lactobacillus iners LEAF 2052A-d]
gi|325476283|gb|EGC79445.1| polyprenyl synthetase [Lactobacillus iners UPII 143-D]
gi|328936978|gb|EGG33408.1| polyprenyl synthetase [Lactobacillus iners SPIN 1401G]
gi|348608904|gb|EGY58871.1| hypothetical protein HMPREF1027_00956 [Lactobacillus sp. 7_1_47FAA]
Length = 288
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|309809474|ref|ZP_07703332.1| polyprenyl synthetase [Lactobacillus iners SPIN 2503V10-D]
gi|308170146|gb|EFO72181.1| polyprenyl synthetase [Lactobacillus iners SPIN 2503V10-D]
Length = 288
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|312871899|ref|ZP_07731983.1| polyprenyl synthetase [Lactobacillus iners LEAF 3008A-a]
gi|312872399|ref|ZP_07732468.1| polyprenyl synthetase [Lactobacillus iners LEAF 2062A-h1]
gi|311091981|gb|EFQ50356.1| polyprenyl synthetase [Lactobacillus iners LEAF 2062A-h1]
gi|311092621|gb|EFQ50981.1| polyprenyl synthetase [Lactobacillus iners LEAF 3008A-a]
Length = 288
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|205374084|ref|ZP_03226884.1| geranyltranstransferase (farnesyl-diphosphate synthase) [Bacillus
coahuilensis m4-4]
Length = 294
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV----E 58
DA+L + E++AS + ++R+ +A G +G+V GQ +++ + E
Sbjct: 116 DALLTYSFEVIASMKDILPQTKIELVRLF---AKAAGPEGMVGGQVADMEGERKTLTLEE 172
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ Y ++ G L GAI+GG S EE+
Sbjct: 173 LEY-IHRNKTGKLLQYAVVAGAIIGGASKEEV 203
>gi|312874544|ref|ZP_07734569.1| polyprenyl synthetase [Lactobacillus iners LEAF 2053A-b]
gi|315653403|ref|ZP_07906325.1| geranyltranstransferase [Lactobacillus iners ATCC 55195]
gi|311089935|gb|EFQ48354.1| polyprenyl synthetase [Lactobacillus iners LEAF 2053A-b]
gi|315489328|gb|EFU78968.1| geranyltranstransferase [Lactobacillus iners ATCC 55195]
Length = 288
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+LP G++ +A + +NS +++V+ TRA+G G+ GQY ++ + +
Sbjct: 115 DALLPLGIQWIAEA-----SNSYELIKVI---TRAIGPNGMAGGQYMDIDSTNNL----- 161
Query: 63 TYKKNE 68
+YK+NE
Sbjct: 162 SYKRNE 167
>gi|212703021|ref|ZP_03311149.1| hypothetical protein DESPIG_01059 [Desulfovibrio piger ATCC 29098]
gi|212673609|gb|EEB34092.1| polyprenyl synthetase [Desulfovibrio piger ATCC 29098]
Length = 298
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ-----YNELQCSQYV 57
DA+L + + PAG ++LR M E RA GS G+V GQ Y L
Sbjct: 119 DALLTDAFAHMCRVELPAG----QVLRAMAEFARAAGSSGMVGGQEWDMLYTGLPPVSMA 174
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E+ + G L CGA+L G + + E+
Sbjct: 175 ELR-RMHAMKTGALLRASCVCGALLAGAADDVCER 208
>gi|425446281|ref|ZP_18826289.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9443]
gi|389733543|emb|CCI02694.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9443]
Length = 309
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ + +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVATQTHNV--PPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 223
>gi|422305087|ref|ZP_16392424.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9806]
gi|389789644|emb|CCI14373.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9806]
Length = 309
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ + +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVATQTHNV--PPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 223
>gi|300869086|ref|ZP_07113686.1| farnesyl-diphosphate synthase [Oscillatoria sp. PCC 6506]
gi|300332902|emb|CBN58882.1| farnesyl-diphosphate synthase [Oscillatoria sp. PCC 6506]
Length = 308
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ ++L+V+ + RA+G+ +V GQ +L+ +++ E
Sbjct: 128 DGLLAYAFEFIAAQTQNVPPQ--QVLQVVARLGRAVGAAELVGGQVVDLESEGVSDVSEE 185
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L CGAIL G ++++ R
Sbjct: 186 TLNFIHTHKTGALLEACVVCGAILAGAEPTDLQRLSR 222
>gi|21592547|gb|AAM64496.1| putative geranylgeranyl pyrophosphate synthase GGPS3 [Arabidopsis
thaliana]
Length = 360
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 198 RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 258 VIMGGGTEEEIEK 270
>gi|428780839|ref|YP_007172625.1| geranylgeranyl pyrophosphate synthase [Dactylococcopsis salina PCC
8305]
gi|428695118|gb|AFZ51268.1| geranylgeranyl pyrophosphate synthase [Dactylococcopsis salina PCC
8305]
Length = 305
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G N +LRV+ ++ +G+ G+V GQ +L +++ E
Sbjct: 125 DGLLAYAFEYVAAQTQ--GVNPSSVLRVIAKLGHTVGATGLVGGQVLDLASEGNPDISLE 182
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L GAILG S E + R
Sbjct: 183 TLNYIHTHKTGALLEACVVTGAILGEASEETLAALSR 219
>gi|134298940|ref|YP_001112436.1| polyprenyl synthetase [Desulfotomaculum reducens MI-1]
gi|134051640|gb|ABO49611.1| farnesyl-diphosphate synthase [Desulfotomaculum reducens MI-1]
Length = 294
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ EL+A + + R+ +V +E+ +A GS G++ GQ ++ S+ ++ +
Sbjct: 115 DALQTLAFELIAQTTE--SFEADRVNQVTLEIAKAAGSSGLIGGQVVDI-LSENRDIDGD 171
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEI 90
T ++ G L GAILGG +V ++
Sbjct: 172 TLEYIHRHKTGALFRASIRAGAILGGATVNQL 203
>gi|159903660|ref|YP_001551004.1| polyprenyl synthetase [Prochlorococcus marinus str. MIT 9211]
gi|159888836|gb|ABX09050.1| Polyprenyl synthetase [Prochlorococcus marinus str. MIT 9211]
Length = 300
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVEMTY 61
DA+L E++ S +P G ++ R+++V+ E++ G+ G+V GQ +L+C + V++
Sbjct: 121 DALLTRAFEMV-SLRSP-GISAERLIKVVGELSLVAGAPGLVGGQVADLECEGKDVDIDT 178
Query: 62 ETY--KKNEGGLHTCGAACGAILGGG 85
Y G L CGA++GG
Sbjct: 179 LEYIHIHKTGALLKASVVCGALIGGA 204
>gi|2578822|dbj|BAA23157.1| geranyl geranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 343
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQ-----------YNELQCSQYVEMTYETYKKNEG 69
G S R+LR + EM RA+G++G+V GQ NE +Y+E+ + +K
Sbjct: 174 GVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMH-VHKTAVL 232
Query: 70 GLHTCGAACGAILGGGSVEEIEK 92
A GAI+GGGS EEIE+
Sbjct: 233 VEAA--AVVGAIMGGGSDEEIER 253
>gi|443920646|gb|ELU40529.1| FAD binding domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 533
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MADAMLPFGLELLAS----SDNPAG--NNSGRILRVMVEMTR----AMGSQGVVEGQYNE 50
+A+ ++P G L S +DNP+G N G M+ R M +QG+VEG + E
Sbjct: 163 LAERIIPLGHRLYTSVTYSTDNPSGSLNRVGNKASTMLMGGRYPFGIMVNQGIVEGVFRE 222
Query: 51 LQCS---QYVEMTYE 62
C Q+ EM YE
Sbjct: 223 AMCETGRQHGEMAYE 237
>gi|386714769|ref|YP_006181092.1| geranyltranstransferase [Halobacillus halophilus DSM 2266]
gi|384074325|emb|CCG45818.1| geranyltranstransferase [Halobacillus halophilus DSM 2266]
Length = 294
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEM 59
DA+L E++ + + N+ R+ ++ E++RA G+ G+VEGQ ++ +E
Sbjct: 116 DALLTLSSEIIVN--DQELNDRERVF-LIQELSRASGASGMVEGQMQDMLSEDKQIPLEE 172
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKI 101
+KK G L GA LG S E+ ++ + GLI +I
Sbjct: 173 LENIHKKKTGKLLNFAIIAGAFLGNASDEKFDEMKKMGEALGLIFQI 219
>gi|260434296|ref|ZP_05788266.1| geranyltranstransferase [Synechococcus sp. WH 8109]
gi|260412170|gb|EEX05466.1| geranyltranstransferase [Synechococcus sp. WH 8109]
Length = 296
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 16/101 (15%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMT 60
DA+L E++A S D PA R+L+V+ E++ G+ G+V GQ +L+ S+ E+
Sbjct: 117 DALLTRAFEMVALRSPDVPAE----RLLKVVGELSLVAGAPGLVGGQVVDLE-SEGKEVD 171
Query: 61 YETYKKNEGGLHTCGA---AC---GAILGGGSVEEIEKKFR 95
ET + LH GA AC GAI+GG E + K R
Sbjct: 172 LETLEYIH--LHKTGALLSACVITGAIIGGAD-EALIKALR 209
>gi|134100514|ref|YP_001106175.1| dimethylallyltranstransferase / geranyltranstransferase /
geranylgeranyl pyrophosphate synthetase
[Saccharopolyspora erythraea NRRL 2338]
gi|291005007|ref|ZP_06562980.1| dimethylallyltranstransferase / geranyltranstransferase /
geranylgeranyl pyrophosphate synthetase
[Saccharopolyspora erythraea NRRL 2338]
gi|133913137|emb|CAM03250.1| dimethylallyltranstransferase / geranyltranstransferase /
geranylgeranyl pyrophosphate synthetase
[Saccharopolyspora erythraea NRRL 2338]
Length = 345
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----V 57
DA+L ++LA+S +PA R L V +V+GQ +L + V
Sbjct: 129 GDALLTLASDVLAASGHPAAQAGVRTLNTAV--------LELVDGQVADLAFEKRDDVGV 180
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
G L C A GA GGGS E++E
Sbjct: 181 AECQTMVAGKTGALLGCACAVGADFGGGSTEQVE 214
>gi|352093628|ref|ZP_08954799.1| Polyprenyl synthetase [Synechococcus sp. WH 8016]
gi|351679968|gb|EHA63100.1| Polyprenyl synthetase [Synechococcus sp. WH 8016]
Length = 312
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVE- 58
DAML E++A S++ PA R+LRV+ E+ G+ G+V GQ +L+ Q V+
Sbjct: 133 DAMLSRAFEMVAVRSANVPAE----RLLRVVGELALVSGAPGLVGGQVVDLESEGQAVDL 188
Query: 59 --MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ Y K L C GA++GG S ++++
Sbjct: 189 ETLEYIHLHKTAALLRAC-VVTGALIGGASDQQLQ 222
>gi|18146809|dbj|BAB82463.1| geranylgeranyl pyrophosphate synthase [Gentiana lutea]
Length = 367
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 3 DAMLPFGLELLASSD---NPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL------QC 53
D++L F E +A++ +PA N S R R+ ++++G++G+V GQ + Q
Sbjct: 185 DSLLAFSFEYIATATKNVSPAKNFS-RSRRI----SKSIGTEGLVAGQVADFVINGENQM 239
Query: 54 SQYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
++ + K L GAILGGG+ EE+EK R GL+ ++ ++
Sbjct: 240 FGLDQLEFIHIHKT-AALLEAAVVLGAILGGGNPEEVEKLRRFARCIGLLFQVVDDIL 296
>gi|1944371|dbj|BAA19583.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 373
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 31/117 (26%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET 63
A+L E + +++ +S R++ + E+ R++G++G+V GQ ++++ E
Sbjct: 193 ALLSLAFEHMTTAEI----SSERMVWAVRELARSIGTRGLVAGQA--------MDISSEG 240
Query: 64 YKKNEGGLH--------------TCGAACGAILGGGSVEEIE--KKFR---GLIIKI 101
NE GL A GAI+GGGS EEIE +KF GL+ ++
Sbjct: 241 LDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQV 297
>gi|75274213|sp|Q9LUD9.1|GGPP3_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase 3,
chloroplastic; Short=GGPP synthase 3; Short=GGPS3;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 3;
AltName: Full=Dimethylallyltranstransferase 3; AltName:
Full=Farnesyl diphosphate synthase 3; AltName:
Full=Farnesyltranstransferase 3; AltName:
Full=Geranyltranstransferase 3; Flags: Precursor
gi|9294377|dbj|BAB02387.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 360
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 198 RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 258 VIMGGGTEEEIEK 270
>gi|425459314|ref|ZP_18838800.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9808]
gi|389822992|emb|CCI29162.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9808]
Length = 326
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 146 DGLLAYAFEYVATQTRNV--PPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 203
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 204 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 240
>gi|186510058|ref|NP_188073.2| geranylgeranyl diphosphate synthase 3 [Arabidopsis thaliana]
gi|332642016|gb|AEE75537.1| geranylgeranyl diphosphate synthase 3 [Arabidopsis thaliana]
Length = 360
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 198 RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 258 VIMGGGTEEEIEK 270
>gi|1229166|gb|AAB67731.1| geranylgeranyl pyrophosphate synthase, partial [Arabidopsis
thaliana]
Length = 222
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 60 RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 119
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 120 VIMGGGTEEEIEK 132
>gi|15224064|ref|NP_179960.1| geranylgeranyl pyrophosphate synthase 4 [Arabidopsis thaliana]
gi|75218930|sp|O04046.2|GGPP2_ARATH RecName: Full=Heterodimeric geranylgeranyl pyrophosphate synthase
large subunit 2; Short=GGPP synthase 2; Short=GGPS2;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 2;
AltName: Full=Dimethylallyltranstransferase 2; AltName:
Full=Farnesyl diphosphate synthase 2; AltName:
Full=Farnesyltranstransferase 2; AltName:
Full=Geranyltranstransferase 2; Flags: Precursor
gi|3152604|gb|AAC17083.1| pregeranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|21593114|gb|AAM65063.1| pregeranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|26450970|dbj|BAC42592.1| putative pregeranylgeranyl pyrophosphate synthase [Arabidopsis
thaliana]
gi|28950937|gb|AAO63392.1| At2g23800 [Arabidopsis thaliana]
gi|206748358|gb|ACI22362.1| geranylgeranyl pyrophosphate synthase 2 [Arabidopsis thaliana]
gi|330252398|gb|AEC07492.1| geranylgeranyl pyrophosphate synthase 4 [Arabidopsis thaliana]
Length = 376
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 31/117 (26%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET 63
A+L E + +++ +S R++ + E+ R++G++G+V GQ ++++ E
Sbjct: 196 ALLSLAFEHMTTAEI----SSERMVWAVRELARSIGTRGLVAGQA--------MDISSEG 243
Query: 64 YKKNEGGLH--------------TCGAACGAILGGGSVEEIE--KKFR---GLIIKI 101
NE GL A GAI+GGGS EEIE +KF GL+ ++
Sbjct: 244 LDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQV 300
>gi|428777168|ref|YP_007168955.1| farnesyl-diphosphate synthase [Halothece sp. PCC 7418]
gi|428691447|gb|AFZ44741.1| farnesyl-diphosphate synthase [Halothece sp. PCC 7418]
Length = 307
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ G +L+V+ ++ A+G+ G+V GQ +L ++ E
Sbjct: 127 DGLLAYAFEYIATYTQ--GVEPAAVLKVVSKLGHAVGATGLVGGQVVDLASEGNPDINLE 184
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + G L GAILGG + E++ + R
Sbjct: 185 TLNYIHTHKTGALLEACVVSGAILGGATEEDLGRLSR 221
>gi|1229164|gb|AAB67730.1| pregeranygeranyl pyrophosphate synthase [Arabidopsis thaliana]
Length = 378
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 31/117 (26%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET 63
A+L E + +++ +S R++ + E+ R++G++G+V GQ ++++ E
Sbjct: 198 ALLSLAFEHMTTAEI----SSERMVWAVRELARSIGTRGLVAGQA--------MDISSEG 245
Query: 64 YKKNEGGLH--------------TCGAACGAILGGGSVEEIE--KKFR---GLIIKI 101
NE GL A GAI+GGGS EEIE +KF GL+ ++
Sbjct: 246 LDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQV 302
>gi|427712083|ref|YP_007060707.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 6312]
gi|427376212|gb|AFY60164.1| geranylgeranyl pyrophosphate synthase [Synechococcus sp. PCC 6312]
Length = 314
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E + +N G + ++L+V+ + A+ + G+V GQ +L+ E+T E
Sbjct: 134 DGLLAYAFEFVV--ENTVGVKAEKLLKVISRLGHAVAATGLVGGQVVDLESEGITEITIE 191
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T + G L G +L G + +++
Sbjct: 192 TLNFIHSHKTGALLEASVLSGGLLAGAEGDAVQR 225
>gi|323702778|ref|ZP_08114438.1| Polyprenyl synthetase [Desulfotomaculum nigrificans DSM 574]
gi|333924276|ref|YP_004497856.1| polyprenyl synthetase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532295|gb|EGB22174.1| Polyprenyl synthetase [Desulfotomaculum nigrificans DSM 574]
gi|333749837|gb|AEF94944.1| Polyprenyl synthetase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 294
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY-NELQCSQYVE--- 58
DA+L E++A + + ++ +V +E+ RA GS G++ GQ + L Q ++
Sbjct: 115 DALLTQAFEVIAGT--AVKVSPDKVNQVTLEIARAAGSLGLIGGQVVDTLSEDQVIDGQV 172
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ Y ++ G L GAIL G S EE+
Sbjct: 173 LEY-IHRHKTGALFRVAVRAGAILSGASAEEL 203
>gi|297825291|ref|XP_002880528.1| geranylgeranyl pyrophosphate synthase [Arabidopsis lyrata subsp.
lyrata]
gi|297326367|gb|EFH56787.1| geranylgeranyl pyrophosphate synthase [Arabidopsis lyrata subsp.
lyrata]
Length = 372
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 31/117 (26%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET 63
A+L E + +++ +S R++ + E+ R++G++G+V GQ ++++ E
Sbjct: 192 ALLSLAFEHMTTAEI----SSERMVWAVRELARSIGTRGLVAGQA--------MDISSEG 239
Query: 64 YKKNEGGLH--------------TCGAACGAILGGGSVEEIE--KKFR---GLIIKI 101
NE GL A GAI+GGGS EEIE +KF GL+ ++
Sbjct: 240 LDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQV 296
>gi|113953464|ref|YP_730204.1| geranylgeranyl diphosphate synthase [Synechococcus sp. CC9311]
gi|113880815|gb|ABI45773.1| geranylgeranyl diphosphate synthase [Synechococcus sp. CC9311]
Length = 312
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 3 DAMLPFGLELLA--SSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-QYVE- 58
DAML E++A S++ PA R+LRV+ E+ G+ G+V GQ +L+ Q V+
Sbjct: 133 DAMLSRAFEMVAVRSANVPAD----RLLRVVGELALVSGAPGLVGGQVVDLESEGQAVDL 188
Query: 59 --MTYETYKKNEGGLHTCGAACGAILGGGSVEEIE 91
+ Y K L C GA++GG + ++++
Sbjct: 189 ETLEYIHLHKTAALLRAC-VVTGALIGGANDDQLQ 222
>gi|297719791|ref|NP_001172257.1| Os01g0248701 [Oryza sativa Japonica Group]
gi|5042458|gb|AAD38295.1|AC007789_21 putative geranylgeranyl pyrophosphate synthase [Oryza sativa
Japonica Group]
gi|11320851|dbj|BAB18334.1| putative geranylgeranyl pyrophosphate synthase [Oryza sativa
Japonica Group]
gi|255673061|dbj|BAH90987.1| Os01g0248701 [Oryza sativa Japonica Group]
Length = 376
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VE 58
DA+ E +A G + R LR + E+ A G+ GV GQ + + +
Sbjct: 193 GDALHALAFEHVARGCGDHGVPADRTLRAVAELGSASGTGGVAAGQVADKESEGLPVSLA 252
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
M + L A GAI+GGG+ E+E+ R
Sbjct: 253 MLEYIHVHKTARLLEAAAVSGAIVGGGADAEVERVRR 289
>gi|254423009|ref|ZP_05036727.1| polyprenyl synthetase superfamily [Synechococcus sp. PCC 7335]
gi|196190498|gb|EDX85462.1| polyprenyl synthetase superfamily [Synechococcus sp. PCC 7335]
Length = 307
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSG---RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEM 59
DA+L + E +A+ P G++ IL+V+ ++ RA+G++G+V GQ +L S+ +
Sbjct: 124 DALLTYAFEHIATQ-TPQGSDGADPQHILKVVAQLGRAVGAEGLVGGQVVDL-ASEGTLV 181
Query: 60 TYET----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + L GA+L G S E + + R
Sbjct: 182 DEETLTFIHMHKTAALLEVSVTSGAMLAGAS-EAVVDRLR 220
>gi|429735211|ref|ZP_19269180.1| putative geranyltranstransferase [Selenomonas sp. oral taxon 138
str. F0429]
gi|429159323|gb|EKY01838.1| putative geranyltranstransferase [Selenomonas sp. oral taxon 138
str. F0429]
Length = 291
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 3 DAMLPFGLELLASSDN-PAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L ++ N PA +LRV+ E++RA G++G+V GQ +L+ ++ V +T
Sbjct: 113 DALLTLAFSVILRQKNVPAEA----LLRVVDEISRAAGAEGMVGGQVLDLR-AEGVRITM 167
Query: 62 ETYKK----NEGGLHTCGAACGAILGGGSVEEI 90
+ ++ G L GAIL G + +++
Sbjct: 168 DELRRMHMGKTGALFHAALRSGAILAGATEKQL 200
>gi|427405648|ref|ZP_18895853.1| hypothetical protein HMPREF9161_00213 [Selenomonas sp. F0473]
gi|425708489|gb|EKU71528.1| hypothetical protein HMPREF9161_00213 [Selenomonas sp. F0473]
Length = 291
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEMTYETYKKNEGGLHTCGAACGAIL 82
R LRV+ E++RA G++G+V GQ +L+ +E + G L GA+L
Sbjct: 133 RHLRVVDEISRAAGAEGMVGGQVLDLEAENRRISLEELRRIHMGKTGALFRAALRSGAVL 192
Query: 83 GGGSVEEI 90
G S E++
Sbjct: 193 AGASEEQL 200
>gi|317152625|ref|YP_004120673.1| polyprenyl synthetase [Desulfovibrio aespoeensis Aspo-2]
gi|316942876|gb|ADU61927.1| Polyprenyl synthetase [Desulfovibrio aespoeensis Aspo-2]
Length = 297
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L L+ + G + R+LR + + A GS G+V GQ +++ + E+ +
Sbjct: 114 DGLLTESFVLMTEASLIRGLPAERVLRAVSVLAVAAGSGGMVGGQAVDMEFTGRAEVALD 173
Query: 63 TYKK----NEGGLHTCGAACGAILGGGSVEEIE 91
+ G L T CGA+L G S ++E
Sbjct: 174 ELRAMHAMKTGALITAACECGAVLAGASERDVE 206
>gi|427701630|ref|YP_007044852.1| geranylgeranyl pyrophosphate synthase [Cyanobium gracile PCC 6307]
gi|427344798|gb|AFY27511.1| geranylgeranyl pyrophosphate synthase [Cyanobium gracile PCC 6307]
Length = 300
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 14/100 (14%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-SQYVEMTY 61
DA+L E++A +P G + R+L+V+ E++ A G+ G+V GQ +L+C ++ V++
Sbjct: 121 DALLTRAFEMVALR-SP-GVPAERLLQVVGELSLASGAPGLVGGQVVDLECEARQVDLDT 178
Query: 62 ETYKKNEGGLHTCGA---AC---GAILGGGSVEEIEKKFR 95
Y LH GA AC GA++ G S EE+ R
Sbjct: 179 LEYIH----LHKTGALLRACVISGALIAGAS-EELLTALR 213
>gi|425441812|ref|ZP_18822079.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9717]
gi|389717377|emb|CCH98522.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9717]
Length = 326
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 146 DGLLAYAFEYVAT--QTLNVPPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 203
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 204 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 240
>gi|51246551|ref|YP_066435.1| geranylgeranyl pyrophosphate synthase [Desulfotalea psychrophila
LSv54]
gi|50877588|emb|CAG37428.1| probable geranylgeranyl pyrophosphate synthase [Desulfotalea
psychrophila LSv54]
Length = 298
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 3 DAMLPFGLELLASSDNPAGN-NSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D +L + +L+A D GN + + L + + RA GS G+V GQ ++Q S+ E+ +
Sbjct: 118 DGLLSWAFDLIA--DRGKGNLTAEKRLDICHMVARAAGSLGMVGGQQLDIQ-SENKEIDF 174
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIE 91
+T ++ G L TC GAI G + +++
Sbjct: 175 DTLATIHRSKTGALITCSIMSGAIGAGANAKQLH 208
>gi|440753463|ref|ZP_20932666.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
TAIHU98]
gi|440177956|gb|ELP57229.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
TAIHU98]
Length = 309
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVAT--QTLNVPPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 223
>gi|325957123|ref|YP_004292535.1| Geranyltranstransferase [Lactobacillus acidophilus 30SC]
gi|385817909|ref|YP_005854299.1| geranyltranstransferase [Lactobacillus amylovorus GRL1118]
gi|325333688|gb|ADZ07596.1| Geranyltranstransferase [Lactobacillus acidophilus 30SC]
gi|327183847|gb|AEA32294.1| Geranyltranstransferase [Lactobacillus amylovorus GRL1118]
Length = 289
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 8/52 (15%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS 54
DA+LP G++ +A G+NS ++++ +T+A+G G+V GQY ++ +
Sbjct: 116 DALLPLGIQWIAQ-----GSNSAELVKI---ITQAVGPNGMVGGQYLDIDST 159
>gi|322418643|ref|YP_004197866.1| poluprenyl synthetase [Geobacter sp. M18]
gi|320125030|gb|ADW12590.1| Polyprenyl synthetase [Geobacter sp. M18]
Length = 295
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L LL S++ G+ + R LRV+ E+ A GS+G+V GQ +++ ++
Sbjct: 115 DALLTEAFILL-SANGEGGDPAAR-LRVIQEIAVASGSRGMVGGQVVDMESEGRHDVDLA 172
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFRGL 97
T + G L GAI+GG S E++F+ L
Sbjct: 173 TLSYIHTHKTGALIRASVRSGAIMGGAS----EEQFKAL 207
>gi|452748833|ref|ZP_21948608.1| geranylgeranyl pyrophosphate synthetase [Pseudomonas stutzeri NF13]
gi|452007253|gb|EMD99510.1| geranylgeranyl pyrophosphate synthetase [Pseudomonas stutzeri NF13]
Length = 296
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 8 FGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL---QCSQYVEMTYETY 64
+G+ A PA N + + RA+G+QG+V GQ+ +L Q +Q ++ T
Sbjct: 131 YGITATAPKLTPAQRNDA-----VATLARAVGAQGLVHGQFRDLHGAQEAQQLDAVIATN 185
Query: 65 KKNEGGLHTCGAACGAILGGG 85
+ G L T +L G
Sbjct: 186 QLKTGSLFTAALEVATLLAGA 206
>gi|425436138|ref|ZP_18816577.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9432]
gi|425449068|ref|ZP_18828911.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 7941]
gi|389679196|emb|CCH92000.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9432]
gi|389764903|emb|CCI09068.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 7941]
Length = 309
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVAT--QTLNVPPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 223
>gi|356572072|ref|XP_003554194.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Glycine max]
Length = 343
Score = 35.8 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQYNE-------LQCSQYVEM--TYETYKKNEGGL 71
G + R++R + E+ + +G++GV+ GQ + L S V + E ++ +
Sbjct: 173 GAYAARVVRAIGELAKCIGAEGVMAGQVVDVNSEGLTLSMSDEVAVLERLEFIHVHKTAV 232
Query: 72 HTCGAACGAILGGGSVEEIEK 92
GAILGGGS EEIE+
Sbjct: 233 VEGAVVMGAILGGGSDEEIER 253
>gi|443669312|ref|ZP_21134542.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
DIANCHI905]
gi|159030944|emb|CAO88634.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330405|gb|ELS45123.1| geranylgeranyl pyrophosphate synthase [Microcystis aeruginosa
DIANCHI905]
Length = 309
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ +IL V+ + R +G+ G+V GQ +L+ +++ E
Sbjct: 129 DGLLAYAFEYVAT--QTLNVPPLQILEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAE 186
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
T + + G L GA+L G E+I K R
Sbjct: 187 TLGFIHTQKTGALLETSVVSGAVLAGAKGEDIAKLAR 223
>gi|401565678|ref|ZP_10806501.1| geranyltranstransferase [Selenomonas sp. FOBRC6]
gi|400185582|gb|EJO19809.1| geranyltranstransferase [Selenomonas sp. FOBRC6]
Length = 291
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 ILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKK----NEGGLHTCGAACGAIL 82
+LRV+ E++RA G++G+V GQ +L ++T E ++ G L GAIL
Sbjct: 134 LLRVVDEISRAAGAEGMVGGQVLDLMAEDR-QITMEELRRVHMGKTGALFHAALRSGAIL 192
Query: 83 GGGSVEEI 90
G + E++
Sbjct: 193 AGATEEQL 200
>gi|315038641|ref|YP_004032209.1| geranyltranstransferase [Lactobacillus amylovorus GRL 1112]
gi|312276774|gb|ADQ59414.1| Geranyltranstransferase [Lactobacillus amylovorus GRL 1112]
Length = 289
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 8/52 (15%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS 54
DA+LP G++ +A G+NS ++++ +T+A+G G+V GQY ++ +
Sbjct: 116 DALLPLGIQWIAQ-----GSNSAELVKI---ITQAVGPNGMVGGQYLDIDST 159
>gi|297834334|ref|XP_002885049.1| hypothetical protein ARALYDRAFT_478873 [Arabidopsis lyrata subsp.
lyrata]
gi|297330889|gb|EFH61308.1| hypothetical protein ARALYDRAFT_478873 [Arabidopsis lyrata subsp.
lyrata]
Length = 360
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 22/81 (27%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTC----------- 74
R++R + E+ RA+G+ G+V G Q +++ E ++ GL
Sbjct: 198 RMIRAVAELARAIGTTGLVAG--------QMIDLASERLNPHDAGLERLEFIHLHKTAAL 249
Query: 75 ---GAACGAILGGGSVEEIEK 92
A G I+GGG+ EEIEK
Sbjct: 250 LEAAAVLGVIMGGGTEEEIEK 270
>gi|325516284|gb|ADZ24720.1| geranylgeranyl pyrophosphate synthase 3 [Solanum pennellii]
Length = 360
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE----TYKKNEGGLHTCGA 76
G +S RI+RV+ E+ + +G++G+V GQ ++ ++ + + L
Sbjct: 195 GVSSDRIVRVIGELAKCIGAEGLVAGQVVDIISEGISDVDLKHLEFIHLHKTAALLEGSV 254
Query: 77 ACGAILGGGSVEEIEK 92
GAILGG E++EK
Sbjct: 255 VLGAILGGAPDEDVEK 270
>gi|120602763|ref|YP_967163.1| polyprenyl synthetase [Desulfovibrio vulgaris DP4]
gi|387153107|ref|YP_005702043.1| farnesyltranstransferase [Desulfovibrio vulgaris RCH1]
gi|120562992|gb|ABM28736.1| farnesyl-diphosphate synthase [Desulfovibrio vulgaris DP4]
gi|311233551|gb|ADP86405.1| Farnesyltranstransferase [Desulfovibrio vulgaris RCH1]
Length = 299
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L +L+AS G +G +L + E++ A GS G+V GQ ++ + ++
Sbjct: 118 DGLLTDAFDLMASVGG--GIPAGHVLAALREVSSAAGSSGMVGGQALDMDYTGRDDIDLA 175
Query: 63 TYKK----NEGGLHTCGAACGAILGGGSVEEIEK 92
+ G L C GA+LGG +E+
Sbjct: 176 ALRTMHAMKTGALIRCSCVAGALLGGAPASAVEQ 209
>gi|404496792|ref|YP_006720898.1| trans-isoprenyl diphosphate synthase [Geobacter metallireducens
GS-15]
gi|418065257|ref|ZP_12702631.1| Polyprenyl synthetase [Geobacter metallireducens RCH3]
gi|78194397|gb|ABB32164.1| trans-isoprenyl diphosphate synthase [Geobacter metallireducens
GS-15]
gi|373562435|gb|EHP88646.1| Polyprenyl synthetase [Geobacter metallireducens RCH3]
Length = 297
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L L++S + A RIL V+ E+ GS+G+V GQ +++ ++
Sbjct: 115 DALLTEAFILMSSPEYAAKAGHARILPVIHEIGICAGSRGMVGGQVVDMESEGKKDIDLA 174
Query: 63 T----YKKNEGGLHTCGAACGAILGG 84
T + G L GAILGG
Sbjct: 175 TVQYIHTHKTGALMKASVKAGAILGG 200
>gi|167040176|ref|YP_001663161.1| polyprenyl synthetase [Thermoanaerobacter sp. X514]
gi|300914259|ref|ZP_07131575.1| Polyprenyl synthetase [Thermoanaerobacter sp. X561]
gi|307724505|ref|YP_003904256.1| polyprenyl synthetase [Thermoanaerobacter sp. X513]
gi|166854416|gb|ABY92825.1| Polyprenyl synthetase [Thermoanaerobacter sp. X514]
gi|300889194|gb|EFK84340.1| Polyprenyl synthetase [Thermoanaerobacter sp. X561]
gi|307581566|gb|ADN54965.1| Polyprenyl synthetase [Thermoanaerobacter sp. X513]
Length = 294
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L G E+L + RIL+ E+ A G +G++ GQ ++ SQ ++TYE
Sbjct: 113 DGLLNLGYEVLVRHALEHPEDYERILKATNEIATASGCKGIIGGQVVDI-LSQNTKLTYE 171
Query: 63 TYK----KNEGGLHTCGAACGAILGGGSVEEI 90
K L GA + G + E++
Sbjct: 172 ELKFIHEHKTAALIEASVCAGAYIAGATEEDV 203
>gi|52080961|ref|YP_079752.1| polyprenyl synthetase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319645081|ref|ZP_07999314.1| YqiD protein [Bacillus sp. BT1B_CT2]
gi|404489843|ref|YP_006713949.1| (2E,6E)-farnesyl diphosphate synthase IspA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|423682933|ref|ZP_17657772.1| polyprenyl synthetase [Bacillus licheniformis WX-02]
gi|52004172|gb|AAU24114.1| Polyprenyl synthetase,Polyprenyl synthetase [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52348839|gb|AAU41473.1| (2E,6E)-farnesyl diphosphate synthase IspA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317392890|gb|EFV73684.1| YqiD protein [Bacillus sp. BT1B_CT2]
gi|383439707|gb|EID47482.1| polyprenyl synthetase [Bacillus licheniformis WX-02]
Length = 296
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L +++ +S+ P+ ++ + +R++ E+ A G++G+V GQ +++ E
Sbjct: 116 DALLTESFKMI-TSNMPSDVSAEKRIRLVNELISAAGAEGMVGGQILDMEAESKSVSLDE 174
Query: 63 TYKKNEG---GLHTCGAACGAILGGGSVEEIEK 92
+ +EG L + GAIL S +EIEK
Sbjct: 175 LQRIHEGKTAKLLSFSVIAGAILADASEKEIEK 207
>gi|46579760|ref|YP_010568.1| geranylgeranyl diphosphate synthase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449175|gb|AAS95827.1| geranylgeranyl diphosphate synthase [Desulfovibrio vulgaris str.
Hildenborough]
Length = 287
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L +L+AS G +G +L + E++ A GS G+V GQ ++ + ++
Sbjct: 106 DGLLTDAFDLMASVGG--GIPAGHVLAALREVSSAAGSSGMVGGQALDMDYTGRDDIDLA 163
Query: 63 TYKK----NEGGLHTCGAACGAILGGGSVEEIEK 92
+ G L C GA+LGG +E+
Sbjct: 164 ALRTMHAMKTGALIRCSCVAGALLGGAPASAVEQ 197
>gi|302392484|ref|YP_003828304.1| farnesyl-diphosphate synthase [Acetohalobium arabaticum DSM 5501]
gi|302204561|gb|ADL13239.1| farnesyl-diphosphate synthase [Acetohalobium arabaticum DSM 5501]
Length = 295
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL----QCSQYVE 58
DA+L + ELL + + +IL+V E+ + G +G+V GQ ++ + + ++
Sbjct: 116 DALLTYAFELLTKLEGD--FTAEQILKVSKEVAQGAGFRGMVGGQAADMLAEGKAVEDID 173
Query: 59 MTYETYKKNEGGLHTCGAACGAILGGGSVEEI 90
+ + ++ G L GAILGG EE+
Sbjct: 174 LEF-IHRYKTGALLQAAVRTGAILGGADKEEL 204
>gi|125569734|gb|EAZ11249.1| hypothetical protein OsJ_01102 [Oryza sativa Japonica Group]
Length = 219
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY---VEM 59
DA+ E +A G + R LR + E+ A G+ GV GQ + + + M
Sbjct: 37 DALHALAFEHVARGCGDHGVPADRTLRAVAELGSASGTGGVAAGQVADKESEGLPVSLAM 96
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
+ L A GAI+GGG+ E+E+ R GL+ ++ ++
Sbjct: 97 LEYIHVHKTARLLEAAAVSGAIVGGGADAEVERVRRYARCVGLLFQVVDDVL 148
>gi|253701624|ref|YP_003022813.1| polyprenyl synthetase [Geobacter sp. M21]
gi|251776474|gb|ACT19055.1| Polyprenyl synthetase [Geobacter sp. M21]
Length = 295
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC--SQYVEMT 60
DA+L LL S N G + LRV+ E+ A GS+G+V GQ +++ ++M
Sbjct: 115 DALLTEAFILL--SGNGEGVDPAARLRVIHEIAHASGSRGMVGGQMVDMESEGKHDIDMA 172
Query: 61 YETY--KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+Y G L GAILGG E + R
Sbjct: 173 TLSYIHTHKTGALIRASVRAGAILGGADEEAFDALTR 209
>gi|125525184|gb|EAY73298.1| hypothetical protein OsI_01173 [Oryza sativa Indica Group]
Length = 314
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC---SQYVEM 59
DA+ E +A G + R LR + E+ A G+ GV GQ + + + M
Sbjct: 132 DALHALAFEHVARGCGDHGVPADRTLRAVAELGSASGTGGVAAGQVADKESEGLPVSLAM 191
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR-----GLIIKITKMMI 106
+ L A GAI+GGG+ E+E+ R GL+ ++ ++
Sbjct: 192 LEYIHVHKTARLLEAAAVSGAIVGGGADAEVERVRRYARCVGLLFQVVDDVL 243
>gi|197117645|ref|YP_002138072.1| trans-isoprenyl diphosphate synthase [Geobacter bemidjiensis Bem]
gi|197087005|gb|ACH38276.1| trans-isoprenyl diphosphate synthase [Geobacter bemidjiensis Bem]
Length = 295
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC--SQYVEMT 60
DA+L LL S N G G LRV+ E+ A GS+G+V GQ +++ ++M
Sbjct: 115 DALLTEAFILL--SCNGEGMEPGARLRVIHEIAHASGSRGMVGGQMVDMESEGKHDIDMA 172
Query: 61 YETY--KKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+Y G L GAILGG + E + R
Sbjct: 173 TLSYIHTHKTGALIRASVRAGAILGGANEETFDALTR 209
>gi|429770498|ref|ZP_19302559.1| replication initiator protein DnaA [Brevundimonas diminuta 470-4]
gi|429184430|gb|EKY25447.1| replication initiator protein DnaA [Brevundimonas diminuta 470-4]
Length = 488
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 26 RILRVMVEMTR--AMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTCGAACGAILG 83
R L+V V +R A+G GVV G+ V+ T + ++ EG ++T A G+ L
Sbjct: 313 RDLKVAVAQSRLNALGKLGVVSGEARADVLEHLVDRTPGSMRELEGAVNTLAAVAGSRLS 372
Query: 84 GGSVEEIE 91
+VEE++
Sbjct: 373 ALTVEEVQ 380
>gi|425469791|ref|ZP_18848698.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9701]
gi|389880334|emb|CCI38905.1| Geranylgeranyl pyrophosphate synthase homolog [Microcystis
aeruginosa PCC 9701]
Length = 326
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET----YKKNEGGLHTCGAACGAI 81
++L V+ + R +G+ G+V GQ +L+ +++ ET + + G L GA+
Sbjct: 167 QVLEVIARLGRTVGAAGLVGGQVLDLESEGKPDISAETLGFIHTQKTGALLETSVVSGAV 226
Query: 82 LGGGSVEEIEKKFR 95
L G E+I K R
Sbjct: 227 LAGAKGEDIAKLAR 240
>gi|15228704|ref|NP_189589.1| geranylgeranyl diphosphate synthase 11 [Arabidopsis thaliana]
gi|75335025|sp|Q9LIA0.1|GGPPB_ARATH RecName: Full=Geranylgeranyl pyrophosphate synthase 11,
chloroplastic; Short=GGPP synthase 11; Short=GGPS11;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 11;
AltName: Full=Dimethylallyltranstransferase 11; AltName:
Full=Farnesyl diphosphate synthase 11; AltName:
Full=Farnesyltranstransferase 11; AltName:
Full=Geranyltranstransferase 11; Flags: Precursor
gi|11994525|dbj|BAB02589.1| geranylgeranyl pyrophosphate synthase [Arabidopsis thaliana]
gi|67633672|gb|AAY78760.1| putative geranylgeranyl pyrophosphate synthase [Arabidopsis
thaliana]
gi|332644062|gb|AEE77583.1| geranylgeranyl diphosphate synthase 11 [Arabidopsis thaliana]
Length = 357
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEG-GLHTC------GAAC 78
R++R ++E+ +A+G++G+V GQ +L CSQ + ++ E LH A
Sbjct: 195 RMIRAVMELAKAIGTKGLVAGQVTDL-CSQGLNPDDVGLERLEFIHLHKTAALLEAAAVL 253
Query: 79 GAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 254 GAIMGGGTEEEIEK 267
>gi|294084635|ref|YP_003551393.1| dimethylallyltransferase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664208|gb|ADE39309.1| dimethylallyltransferase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 302
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ E+LA D+ + + ++ + RA G G+ GQ +LQ E
Sbjct: 123 DALQTLAFEILA--DDATHPDPAVRVALVTTLARASGLAGMAGGQMLDLQAETRTLTLAE 180
Query: 63 TYKKN---EGGLHTCGAACGAILGGGS 86
T + G L C A+CGA++G S
Sbjct: 181 TEQMQMMKTGALIVCAASCGALVGEAS 207
>gi|26450928|dbj|BAC42571.1| putative geranylgeranyl pyrophosphate synthase GGPS3 [Arabidopsis
thaliana]
Length = 360
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ R +G+ G+V GQ +L + +E + L A G
Sbjct: 198 RMIRAVVELARTIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 258 VIMGGGTEEEIEK 270
>gi|119489387|ref|ZP_01622167.1| Polyprenyl synthetase [Lyngbya sp. PCC 8106]
gi|119454660|gb|EAW35806.1| Polyprenyl synthetase [Lyngbya sp. PCC 8106]
Length = 287
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + E +A+ ++L V+ + RA+G+ G+V GQ +++ ++T E
Sbjct: 107 DGLLSYAFEFVATQTTNVPPQ--QVLDVIGHLGRAVGAAGLVGGQVVDVESEGKTDITEE 164
Query: 63 ----TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ G L GAIL G S E E+ R
Sbjct: 165 QLTFIHTHKTGALLEACVVSGAILAGTSTENRERLSR 201
>gi|153853044|ref|ZP_01994453.1| hypothetical protein DORLON_00438 [Dorea longicatena DSM 13814]
gi|149753830|gb|EDM63761.1| polyprenyl synthetase [Dorea longicatena DSM 13814]
Length = 300
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---EM 59
DA+L + E + A S +I R + + R G G++ GQ +++ + + ++
Sbjct: 119 DALLNYAFETAFRAFETAPQESLKIGRALSVLGRKAGVYGMIGGQVIDVKETGHAVPKDV 178
Query: 60 TYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
Y+ G L C GAILGG E++ K
Sbjct: 179 LDTIYELKTGALIECAMMIGAILGGAEEEDVRK 211
>gi|421508686|ref|ZP_15955598.1| aldo/keto reductase [Bacillus anthracis str. UR-1]
gi|401821309|gb|EJT20467.1| aldo/keto reductase [Bacillus anthracis str. UR-1]
Length = 336
Score = 34.3 bits (77), Expect = 9.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTCGAACGA 80
G N G + +M+++ A + ++ G+Y+ L + +E KN + G
Sbjct: 179 GVNKGEAIELMLDLEEAKPNVSLLAGRYSLLDHERALERVMPAAVKNNMDIVVGGPYSSG 238
Query: 81 ILGGGSVEEIEKKFRGLIIKITKM 104
+L GG+ E +K +I K+ KM
Sbjct: 239 VLAGGTHFEYQKASPEIIAKVNKM 262
>gi|344940493|ref|ZP_08779781.1| Geranyltranstransferase [Methylobacter tundripaludum SV96]
gi|344261685|gb|EGW21956.1| Geranyltranstransferase [Methylobacter tundripaludum SV96]
Length = 298
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ 52
DA+ E+LA+ + GR L++++ +T+A GSQG+V GQ +L+
Sbjct: 117 DALQALAFEILANDPSITATAEGR-LKMIIALTKASGSQGMVGGQAIDLE 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,647,953,500
Number of Sequences: 23463169
Number of extensions: 59063467
Number of successful extensions: 134829
Number of sequences better than 100.0: 435
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 397
Number of HSP's that attempted gapping in prelim test: 134536
Number of HSP's gapped (non-prelim): 436
length of query: 111
length of database: 8,064,228,071
effective HSP length: 79
effective length of query: 32
effective length of database: 6,210,637,720
effective search space: 198740407040
effective search space used: 198740407040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)