BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047640
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39108|GGR_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase small subunit,
chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2
Length = 326
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ P + + S P ILR++ E+ R +GS G+ GQY +L+ + +++
Sbjct: 158 DALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLEGGPF-PLSFV 216
Query: 63 TYKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
KK G + C A CG +LGG + +E++ R
Sbjct: 217 QEKKF-GAMGECSAVCGGLLGGATEDELQSLRR 248
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D++L F E + +S AG RI+ + E+ +++G++G+V GQ +++C+ ++
Sbjct: 187 GDSLLAFAFEHIVNST--AGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSL 244
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
ET + L GAILGGG+ E+EK R
Sbjct: 245 ETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRR 282
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ ++ E+
Sbjct: 188 GDALLAFAFEHIAVST--LNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDL 245
Query: 62 ETYK----KNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAILGGG+ EE+EK
Sbjct: 246 EKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 280
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++
Sbjct: 185 GDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAG--------QVVDISS 236
Query: 62 ETYKKNEGGLH--------------TCGAACGAILGGGSVEEIEK 92
E N+ GL A GAI+GGGS +EIE+
Sbjct: 237 EGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIER 281
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
DA++ F E LA+S + R++R + E+ +A+GS+G+V G Q V++T
Sbjct: 164 GDALISFAFEHLATS---TAVSPARVVRAIGELAKAIGSKGLVAG--------QVVDLTS 212
Query: 62 ETYKKNEGGLHT--------------CGAACGAILGGGSVEEIEKKFR 95
+N+ GL GAI+GGGS EE+EK R
Sbjct: 213 GGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGSDEEVEKLRR 260
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY----- 56
DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ ++
Sbjct: 181 GDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNV 239
Query: 57 -VEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+E + L A G I+GGGS EEIE+
Sbjct: 240 GLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIER 276
>sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic
OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2
Length = 361
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 24 SGRILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAA 77
S R++R +VE+ RA+G++G+V GQ +L + +E + L A
Sbjct: 197 SERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLEAAAV 256
Query: 78 CGAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 257 IGAIMGGGTEEEIEK 271
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYV---- 57
DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V GQ ++ CS+ +
Sbjct: 175 GDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQVVDV-CSEGIADVG 231
Query: 58 -EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + L GAI+GG + E+I K
Sbjct: 232 LEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISK 267
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana
GN=GGPP4 PE=2 SV=1
Length = 372
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL------QCSQYV 57
A+L E L +D +S +++R + E+ +++G++G+V GQ +L Q +
Sbjct: 192 ALLALAFEHLTEADV----SSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGL 247
Query: 58 EMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEK 92
E + G L A GA++GGG+ +EIEK
Sbjct: 248 EDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 282
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthase 6, mitochondrial
OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2
Length = 336
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 21 GNNSGRILRVMVEMTRAMGSQGVVEGQ-----------YNELQCSQYVEMTYETYKKNEG 69
G S R+LR + EM RA+G++G+V GQ NE +Y+E+ + +K
Sbjct: 167 GVTSERVLRAVQEMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMH-VHKTAVL 225
Query: 70 GLHTCGAACGAILGGGSVEEIEK 92
A GAI+GGGS EEIE+
Sbjct: 226 V--EAAAVVGAIMGGGSDEEIER 246
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1
Length = 360
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
R++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 198 RMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ EEIEK
Sbjct: 258 VIMGGGTEEEIEK 270
>sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2
OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2
Length = 376
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 31/117 (26%)
Query: 4 AMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYET 63
A+L E + +++ +S R++ + E+ R++G++G+V GQ ++++ E
Sbjct: 196 ALLSLAFEHMTTAEI----SSERMVWAVRELARSIGTRGLVAGQA--------MDISSEG 243
Query: 64 YKKNEGGLH--------------TCGAACGAILGGGSVEEIE--KKFR---GLIIKI 101
NE GL A GAI+GGGS EEIE +KF GL+ ++
Sbjct: 244 LDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQV 300
>sp|Q9LIA0|GGPPB_ARATH Geranylgeranyl pyrophosphate synthase 11, chloroplastic
OS=Arabidopsis thaliana GN=At3g29430 PE=2 SV=1
Length = 357
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEG-GLHTC------GAAC 78
R++R ++E+ +A+G++G+V GQ +L CSQ + ++ E LH A
Sbjct: 195 RMIRAVMELAKAIGTKGLVAGQVTDL-CSQGLNPDDVGLERLEFIHLHKTAALLEAAAVL 253
Query: 79 GAILGGGSVEEIEK 92
GAI+GGG+ EEIEK
Sbjct: 254 GAIMGGGTEEEIEK 267
>sp|Q9LJY2|GGPPA_ARATH Geranylgeranyl pyrophosphate synthase 10, mitochondrial
OS=Arabidopsis thaliana GN=At3g20160 PE=2 SV=1
Length = 344
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNEL-------QCSQYVEMTYETYKKNEGGLHTCGAAC 78
RIL+ + EM +A+ +G+V GQ +L +E + L A
Sbjct: 183 RILKTVQEMVKAV--EGLVAGQQADLAGEGMRFDSDTGLEHLEFIHIHKTAALLEAAAVM 240
Query: 79 GAILGGGSVEEIEK 92
GAI+GGGS EEIE+
Sbjct: 241 GAIMGGGSDEEIER 254
>sp|Q9LUE1|GGPP9_ARATH Geranylgeranyl pyrophosphate synthase 9, chloroplastic
OS=Arabidopsis thaliana GN=GGPPS9 PE=1 SV=1
Length = 360
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQY------VEMTYETYKKNEGGLHTCGAACG 79
+++R +VE+ RA+G+ G+V GQ +L + +E + L A G
Sbjct: 198 KMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLG 257
Query: 80 AILGGGSVEEIEK 92
I+GGG+ +EIEK
Sbjct: 258 VIMGGGTEQEIEK 270
>sp|Q9LHR4|GGPPC_ARATH Geranylgeranyl pyrophosphate synthase 12, chloroplastic
OS=Arabidopsis thaliana GN=At3g32040 PE=2 SV=1
Length = 360
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 26 RILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLH--------TCGAA 77
R++R + E+ +A+G++G+V GQ ++L CSQ + Y+ + +H A
Sbjct: 198 RMIRSVTELAKAIGTKGLVAGQVSDL-CSQGLN-PYDVGLERLEFIHLHKTAALLEAAAV 255
Query: 78 CGAILGGGSVEEIEK 92
GAI+GGG+ EEI+K
Sbjct: 256 LGAIIGGGTEEEIQK 270
>sp|O66952|ISPA_AQUAE Farnesyl diphosphate synthase OS=Aquifex aeolicus (strain VF5)
GN=ispA PE=3 SV=1
Length = 262
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L + E+L+ +N + IL + + + GS G+V GQ L Y ++ YE
Sbjct: 110 DALLTYTFEVLSQRENYKTLSCEEILEINKIIAQKAGSNGMVGGQV--LDIKGYEDL-YE 166
Query: 63 TYKKNEGGLHTCGAACGAILG 83
K G L CGA++
Sbjct: 167 VSVKKTGALFEACFMCGAVVA 187
>sp|Q6FEC7|HIS8_ACIAD Histidinol-phosphate aminotransferase OS=Acinetobacter sp. (strain
ADP1) GN=hisC PE=3 SV=1
Length = 361
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 30 VMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNE 68
V +E+ +A+ QG++ +N+ + +QY+ +T T ++N+
Sbjct: 312 VAIELAKALREQGIIVRHFNKPRINQYLRITVGTDEQNQ 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,954,243
Number of Sequences: 539616
Number of extensions: 1463143
Number of successful extensions: 3612
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3585
Number of HSP's gapped (non-prelim): 25
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)