Query 047640
Match_columns 111
No_of_seqs 127 out of 1102
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qkc_B Geranyl diphosphate syn 99.9 8.8E-27 3E-31 174.1 12.5 109 1-109 111-222 (273)
2 4f62_A Geranyltranstransferase 99.9 1.3E-26 4.5E-31 176.4 12.3 105 1-108 114-223 (317)
3 3p8l_A Geranyltranstransferase 99.9 1.5E-26 5.1E-31 175.1 12.3 104 1-108 120-227 (302)
4 3kra_B Geranyl diphosphate syn 99.9 1.5E-26 5.1E-31 173.0 12.1 110 1-110 108-222 (274)
5 3ts7_A Geranyltranstransferase 99.9 1.8E-26 6.3E-31 176.0 12.3 107 1-108 119-230 (324)
6 3pde_A Farnesyl-diphosphate sy 99.9 1.3E-26 4.5E-31 175.9 11.1 104 1-108 119-226 (309)
7 3npk_A Geranyltranstransferase 99.9 2.3E-26 7.8E-31 173.3 12.3 104 1-108 109-216 (291)
8 3lsn_A Geranyltranstransferase 99.9 2.9E-26 9.8E-31 173.6 12.7 107 1-108 113-224 (304)
9 1rtr_A Geranyltranstransferase 99.9 2.8E-26 9.4E-31 173.4 11.9 105 1-108 111-219 (301)
10 3llw_A Geranyltranstransferase 99.9 2.4E-26 8.2E-31 174.6 11.0 104 1-108 123-231 (311)
11 2h8o_A Geranyltranstransferase 99.9 4E-26 1.4E-30 174.8 11.2 106 1-108 154-263 (335)
12 3uca_A Geranyltranstransferase 99.9 2.1E-26 7E-31 175.8 9.0 104 1-108 143-252 (324)
13 1rqj_A Geranyltranstransferase 99.9 6.7E-26 2.3E-30 171.1 10.5 107 1-108 113-224 (299)
14 3p8r_A Geranyltranstransferase 99.9 3.6E-26 1.2E-30 172.9 7.4 107 1-108 119-230 (302)
15 3lom_A Geranyltranstransferase 99.9 2E-25 6.7E-30 169.6 10.8 105 1-108 119-231 (313)
16 2j1p_A Geranylgeranyl pyrophos 99.9 1.7E-25 5.9E-30 168.5 10.3 107 1-108 121-234 (293)
17 1wy0_A Geranylgeranyl pyrophos 99.9 7.2E-25 2.5E-29 167.8 11.8 102 1-108 113-219 (342)
18 3m0g_A Farnesyl diphosphate sy 99.9 4.1E-25 1.4E-29 166.9 9.4 103 1-109 110-218 (297)
19 3ipi_A Geranyltranstransferase 99.9 1E-24 3.6E-29 164.5 9.8 96 1-108 109-208 (295)
20 3nf2_A Putative polyprenyl syn 99.9 2.5E-24 8.4E-29 165.8 11.9 100 1-108 121-225 (352)
21 3oyr_A Trans-isoprenyl diphosp 99.9 3E-24 1E-28 164.9 11.9 97 1-108 132-233 (345)
22 3lk5_A Geranylgeranyl pyrophos 99.9 3.9E-24 1.3E-28 166.1 11.5 102 1-108 151-258 (380)
23 3mzv_A Decaprenyl diphosphate 99.9 5.6E-24 1.9E-28 163.2 11.5 97 1-108 120-221 (341)
24 3aqb_B Component B of hexapren 99.9 5.8E-24 2E-28 161.9 11.2 97 1-108 111-212 (325)
25 3rmg_A Octaprenyl-diphosphate 99.9 8E-24 2.8E-28 161.9 11.9 97 1-108 114-215 (334)
26 3apz_A Geranyl diphosphate syn 99.9 7.8E-24 2.7E-28 162.4 11.8 97 1-108 134-235 (348)
27 3lmd_A Geranylgeranyl pyrophos 99.9 8.9E-24 3.1E-28 163.1 10.3 96 1-108 142-241 (360)
28 4dhd_A Polyprenyl synthetase; 99.9 1.9E-23 6.4E-28 161.1 11.6 98 1-108 112-226 (358)
29 3pko_A Geranylgeranyl pyrophos 99.9 2.5E-23 8.5E-28 159.1 11.3 98 1-108 123-225 (334)
30 2ftz_A Geranyltranstransferase 99.9 1.8E-23 6.1E-28 157.0 9.6 94 1-108 115-214 (284)
31 1v4e_A Octoprenyl-diphosphate 99.9 2E-23 6.8E-28 157.6 9.2 94 1-108 108-205 (299)
32 2e8v_A Geranylgeranyl pyrophos 99.9 6.2E-23 2.1E-27 157.2 10.2 101 1-108 107-215 (340)
33 3tc1_A Octaprenyl pyrophosphat 99.9 9.1E-23 3.1E-27 155.1 10.7 93 1-108 104-201 (315)
34 1yhl_A Farnesyl pyrophosphate 99.9 3.6E-23 1.2E-27 159.4 8.1 102 1-108 127-251 (362)
35 2azj_A Geranylgeranyl pyrophos 99.9 4.7E-23 1.6E-27 155.0 7.3 92 1-108 116-209 (289)
36 1wmw_A Geranylgeranyl diphosph 99.9 1E-22 3.4E-27 155.4 9.1 100 1-108 106-213 (330)
37 2qis_A Farnesyl pyrophosphate 99.9 5.7E-22 2E-26 153.6 9.3 102 1-108 152-265 (374)
38 4fp4_A Polyprenyl synthetase; 99.9 4.9E-22 1.7E-26 149.3 8.1 90 1-108 115-205 (285)
39 1uby_A FPS, farnesyl diphospha 99.9 1.1E-21 3.7E-26 151.7 9.5 101 2-108 146-258 (367)
40 2q80_A Geranylgeranyl pyrophos 99.8 1.5E-21 5E-26 147.5 8.2 93 1-108 92-190 (301)
41 3dyh_A Farnesyl pyrophosphate 99.8 2.7E-21 9.2E-26 150.5 8.8 102 1-108 153-279 (390)
42 2her_A Fragment, farnesyl pyro 99.8 8E-22 2.7E-26 152.6 5.6 101 1-108 142-255 (368)
43 2ihi_A Pyrophosphate synthase; 99.8 2.6E-21 8.9E-26 150.9 8.3 102 1-108 154-287 (395)
44 2q58_A Fragment, farnesyl pyro 99.8 1.1E-21 3.6E-26 151.7 5.3 104 1-108 142-255 (368)
45 3mav_A Farnesyl pyrophosphate 99.8 9.3E-21 3.2E-25 147.5 8.2 102 1-108 152-287 (395)
46 3vj8_A Squalene synthase; farn 64.1 42 0.0014 25.0 9.1 65 41-106 121-187 (343)
47 4hd1_A Squalene synthase HPNC; 50.4 68 0.0023 23.1 8.4 60 41-106 107-168 (294)
48 3acx_A Dehydrosqualene synthas 32.3 1.4E+02 0.0047 21.3 8.5 60 41-106 111-173 (293)
49 3aqb_A Component A of hexapren 27.1 49 0.0017 22.0 2.8 29 1-38 75-103 (147)
No 1
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=99.94 E-value=8.8e-27 Score=174.10 Aligned_cols=109 Identities=49% Similarity=0.816 Sum_probs=96.4
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc--CCHHHHHHHHHhhhHHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS--QYVEMTYETYKKNEGGLHTCGAAC 78 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~--~~~~~~~~i~~~KTa~L~~~~~~~ 78 (111)
+||+|+++||+++++..++...++.+.++++..+++++|..+|+.||++|+.++ .+++++..|+++|||+||++||++
T Consensus 111 aGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~l 190 (273)
T 3qkc_B 111 TGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAAC 190 (273)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 599999999999998643112345677899999999999999999999999874 567788889999999999999999
Q ss_pred HHHhCCCCHHHHHHHH-HhHHhhHhhhhhcCC
Q 047640 79 GAILGGGSVEEIEKKF-RGLIIKITKMMIRNS 109 (111)
Q Consensus 79 Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~~ 109 (111)
||+++|+++++++.++ ||.++|++|||+||-
T Consensus 191 Gailaga~~~~~~~l~~~G~~lGlaFQI~DD~ 222 (273)
T 3qkc_B 191 GAILGGCDEDKIEKLRRFGLYVGTVQGLLGKN 222 (273)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 999999999999984
No 2
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=99.94 E-value=1.3e-26 Score=176.39 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=96.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.+ ++++...+++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 114 aGD~Ll~~Af~~l~~~~---~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~ 190 (317)
T 4f62_A 114 AGDALQTFAFELLSNPT---SAQPELAIKLIQELVVASGRNGMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVR 190 (317)
T ss_dssp HHHHHHHHHHHHHTCTT---CCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHH
Confidence 59999999999999863 3456678899999999999889999999999874 78999999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++| +++++++.++ ||.++|++|||+||
T Consensus 191 ~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 223 (317)
T 4f62_A 191 MGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDD 223 (317)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 8999999999 99999999999997
No 3
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=99.94 E-value=1.5e-26 Score=175.08 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=96.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.. +++...+++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 120 aGD~Ll~~A~~~l~~~~----~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~ 195 (302)
T 3p8l_A 120 AGDGLLTGAFQLLSLSQ----LGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALI 195 (302)
T ss_dssp HHHHHHHHHHHHHHTSS----CCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHH
Confidence 59999999999999862 356677899999999999899999999999874 78999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++++.+.++ ||.++|++|||+||
T Consensus 196 ~ga~laga~~~~~~~l~~~g~~lGlaFQI~DD 227 (302)
T 3p8l_A 196 AGGVLANQTEEVIGLLTQFAHHYGLAFQIRDD 227 (302)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 4
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=99.94 E-value=1.5e-26 Score=172.97 Aligned_cols=110 Identities=41% Similarity=0.664 Sum_probs=97.6
Q ss_pred ChhhHHHHHHHHHHcCCCCC-CCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..++. ..++.+.++++..+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||
T Consensus 108 aGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~ 187 (274)
T 3kra_B 108 TGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGA 187 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999875310 1234567889999999999999999999999874 7889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcCCC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRNSF 110 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~~~ 110 (111)
++|++++|+++++++.++ ||.++|++|||+||-+
T Consensus 188 ~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~ 222 (274)
T 3kra_B 188 ACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKN 222 (274)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 9999999999999853
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=99.94 E-value=1.8e-26 Score=176.02 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=97.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++... .+.++...+++++.+++++|+.+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 119 aGD~L~~~Af~~l~~~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~ 197 (324)
T 3ts7_A 119 AGDGLQALAFHVLAQDPS-IAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVR 197 (324)
T ss_dssp HHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 599999999999998731 13456668899999999999899999999999874 78999999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++| +++++.+.++ ||.++|+||||+||
T Consensus 198 ~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 198 LACLARPGLPAEQFDRLDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999 99999999999997
No 6
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=99.94 E-value=1.3e-26 Score=175.89 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=96.3
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.. .++...+++++.+++++|+.+|+.||++|+.++ +++++|.+|+++|||+||++||+
T Consensus 119 aGD~Ll~~Af~~l~~~~----~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~ 194 (309)
T 3pde_A 119 AGDGLLTLAFQWLTATD----LPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQ 194 (309)
T ss_dssp HHHHHHHHHHHHHTSSS----CCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHH
Confidence 59999999999999863 356677899999999999899999999999874 78999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++++.+.++ ||.++|++|||+||
T Consensus 195 ~ga~laga~~~~~~~l~~~g~~lGlaFQI~DD 226 (309)
T 3pde_A 195 AGLILGQAPEAQWPAYLQFADAFGLAFQIYDD 226 (309)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 7
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=99.94 E-value=2.3e-26 Score=173.32 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=95.4
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.. +++....++++.++++.|+.+|+.||.+|+.++ .++++|.+|+++|||+||++||+
T Consensus 109 aGD~Ll~~A~~~l~~~~----~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~ 184 (291)
T 3npk_A 109 VGDALNTEAFLVLSHAH----LKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALK 184 (291)
T ss_dssp HHHHHHHHHHHHHHTSS----SCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHH
Confidence 59999999999998752 356667889999999978899999999999863 78999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+||+++|+++++.+.++ ||.++|++|||+||
T Consensus 185 ~ga~laga~~~~~~~l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 185 MGCEICELNNEESNQIYKLGLKLGLIFQINDD 216 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 8
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=99.94 E-value=2.9e-26 Score=173.63 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++... +++++...+++++.+++++|..+|+.||++|+.++ .++++|++|+++|||+||++||+
T Consensus 113 aGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~ 191 (304)
T 3lsn_A 113 AGDGLQSLAFSALLDPAL-SDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVI 191 (304)
T ss_dssp HHHHHHHHHHHHHHCTTS-CCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-cCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 599999999999998632 13456678899999999998889999999999874 78999999999999999999999
Q ss_pred HHHHhCCC-CHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGG-SVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~-~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+ +++..+.++ ||.++|++|||+||
T Consensus 192 ~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DD 224 (304)
T 3lsn_A 192 LGALASGRAEKGELKALQTYAQAIGLAFQVQDD 224 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 898999999 99999999999997
No 9
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=99.94 E-value=2.8e-26 Score=173.43 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=96.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.. .++++...++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 111 aGD~Ll~~A~~~l~~~~---~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~ 187 (301)
T 1rtr_A 111 AGDALLTKAFELISSDD---RLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVM 187 (301)
T ss_dssp HHHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHH
Confidence 59999999999999862 2355677889999999999999999999999873 78999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++++.+.++ ||.++|++|||+||
T Consensus 188 ~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 188 SAADIANVDDTTKEHLESYSYHLGMMFQIKDD 219 (301)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 10
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=99.94 E-value=2.4e-26 Score=174.55 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++. .+++...+++++.+++++|+.+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 123 aGD~Ll~~Af~~l~~~----~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~ 198 (311)
T 3llw_A 123 IGDALNTYSFELLSNA----LLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLI 198 (311)
T ss_dssp HHHHHHHHHHHHHHHS----CSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 5999999999999984 2356667899999999988899999999999873 78999999999999999999999
Q ss_pred HHHHhCCCCHHHH-HHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEI-EKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~-~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|++++++ +.++ ||.++|++|||+||
T Consensus 199 lga~laga~~~~~~~~l~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 199 MGLVASGIKDEELFKWLQAFGLKMGLCFQVLDD 231 (311)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 9999 99999999999997
No 11
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=99.93 E-value=4e-26 Score=174.81 Aligned_cols=106 Identities=22% Similarity=0.319 Sum_probs=97.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++... +++++...++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 154 aGD~Ll~~A~~~l~~~~~--~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~ 231 (335)
T 2h8o_A 154 AGDSLLTLAFDIIASDDN--PLAAERKAALVISLARAAGIGGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACE 231 (335)
T ss_dssp HHHHHHHHHHHHHHSTTS--CSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHH
Confidence 599999999999998621 3456677889999999999999999999999873 78999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++++++.++ ||.++|++|||+||
T Consensus 232 ~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 232 AGAIIAGSNQAERQRLRLFGEKIGLSFQLADD 263 (335)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=99.93 E-value=2.1e-26 Score=175.76 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHH-HHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRI-LRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~ 75 (111)
+||+|+++||+++++.. +++... +++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++|
T Consensus 143 aGD~Ll~~A~~~l~~~~----~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a 218 (324)
T 3uca_A 143 AGDALLNEAMKILVDYS----LEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKAS 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC----CChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHH
Confidence 59999999999999852 123334 789999999998899999999999873 789999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 76 AACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 76 ~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|++|++++|+++++.+.++ ||.++|++|||+||
T Consensus 219 ~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 219 IMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDD 252 (324)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999997
No 13
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=99.93 E-value=6.7e-26 Score=171.09 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=96.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++... .++++....++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++||+
T Consensus 113 ~GD~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~ 191 (299)
T 1rqj_A 113 AGDALQTLAFSILSDADM-PEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVR 191 (299)
T ss_dssp HHHHHHHHHHHHHHHSCC-TTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-ccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 599999999999998521 13456678899999999998899999999999874 78999999999999999999999
Q ss_pred HHHHh-CCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAIL-GGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~-~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|+++ +|+++++.+.++ ||.++|++|||+||
T Consensus 192 ~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 192 LGALSAGDKGRRALPVLDKYAESIGLAFQVQDD 224 (299)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 998899999999 99999999999997
No 14
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=99.93 E-value=3.6e-26 Score=172.93 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=94.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++... .++++...+++++.+++++|+.+|+.||++|+.+. .++++|.+|+++|||+||++||+
T Consensus 119 aGD~L~~~a~~~l~~~~~-~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~ 197 (302)
T 3p8r_A 119 TGDALQTLAFTILAEGDL-SAAGETQRVAMLQALAEASGAQGMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIR 197 (302)
T ss_dssp HHHHHHHHHHHHHHHSCC-CHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHH
Confidence 599999999999998731 01123346788999999998899999999999873 78999999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++| +++++.+.++ ||.++|++|||+||
T Consensus 198 ~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 198 LGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp HHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 8888899999 99999999999997
No 15
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=99.92 E-value=2e-25 Score=169.64 Aligned_cols=105 Identities=18% Similarity=0.107 Sum_probs=94.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCCh-HHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNS-GRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~ 75 (111)
+||+|+++||+++++... +.++ ...+++++.+++++|+.+|+.||++|+.++ .++++|.+|+++|||+||++|
T Consensus 119 aGD~Ll~~a~~~l~~~~~--~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a 196 (313)
T 3lom_A 119 VGDGMQALAIEVLLMRLS--PLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILAC 196 (313)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHH
Confidence 599999999999998621 2334 567899999999999899999999999873 789999999999999999999
Q ss_pred HHHHHHhCC--CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 76 AACGAILGG--GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 76 ~~~Gai~~g--~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|++ |+++| +++++++.++ ||.++|++|||+||
T Consensus 197 ~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DD 231 (313)
T 3lom_A 197 FEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDD 231 (313)
T ss_dssp HHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999 8999999999 99999999999997
No 16
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=99.92 E-value=1.7e-25 Score=168.46 Aligned_cols=107 Identities=29% Similarity=0.422 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc------CCHHHHHHHHHhhhHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS------QYVEMTYETYKKNEGGLHTC 74 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~------~~~~~~~~i~~~KTa~L~~~ 74 (111)
+||+|+++||+++++..+ ..+++...++++..+++++|+.+|+.||++|+.++ .++++|..|+++|||+||++
T Consensus 121 aGD~Ll~~A~~~l~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~ 199 (293)
T 2j1p_A 121 AGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA 199 (293)
T ss_dssp HHHHHHHHHHHHHHHHSC-TTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHH
Confidence 599999999999998631 11346678889999999988889999999999763 45688999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 75 GAACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 75 ~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
||++|++++|+++++.+.++ ||.++|++|||+||
T Consensus 200 a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 234 (293)
T 2j1p_A 200 SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDD 234 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999997
No 17
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=99.92 E-value=7.2e-25 Score=167.83 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=93.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++.. .+++...++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 113 ~GD~L~~~a~~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~ 186 (342)
T 1wy0_A 113 AGDLLFSKAFEAVARAE----IPPEKKARVLEVIVKAS--NELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASA 186 (342)
T ss_dssp HHHHHHHHHHHHHHTCC----SCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc----cCcccHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHH
Confidence 59999999999999873 34556778999999998 99999999999863 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 187 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 219 (342)
T 1wy0_A 187 KVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDD 219 (342)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 18
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=99.92 E-value=4.1e-25 Score=166.86 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=92.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc-----CCHHHHHHHHHhhhHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-----QYVEMTYETYKKNEGGLHTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~-----~~~~~~~~i~~~KTa~L~~~~ 75 (111)
+||+|+++||+++++... .++...+++++.+++++|..+|+.||++|+.++ .++++|.+|+++|||+||++|
T Consensus 110 aGD~Ll~~a~~~l~~~~~---~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~ 186 (297)
T 3m0g_A 110 AGDALQTLAFELCTDPVL---GSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA 186 (297)
T ss_dssp HHHHHHHHHHHHTTCGGG---CCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH
Confidence 599999999999998631 135567889999999999999999999999763 789999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcCC
Q 047640 76 AACGAILGGGSVEEIEKKF-RGLIIKITKMMIRNS 109 (111)
Q Consensus 76 ~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~~ 109 (111)
|++|++++|++++ .++ ||.++|++|||+||=
T Consensus 187 ~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 187 AQAGAILAGADRG---PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp HHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 788 999999999999983
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=99.91 E-value=1e-24 Score=164.49 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.. + ++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||+
T Consensus 109 aGD~Ll~~a~~ll~~~~------~----~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~ 176 (295)
T 3ipi_A 109 CGDYLIAKSIAFISPYG------E----KVIQDFGKAG--MDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISAS 176 (295)
T ss_dssp HHHHHHHHHHHHHGGGC------H----HHHHHHHHHH--HHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHch------H----HHHHHHHHHH--HHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 59999999999998762 2 5667778887 88999999999874 67789999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++++++.++ ||+++|++|||+||
T Consensus 177 ~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DD 208 (295)
T 3ipi_A 177 IGAYTGGAEEELAERFSHFGNALGTAYQIVDD 208 (295)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 20
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=99.91 E-value=2.5e-24 Score=165.77 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=90.9
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++.++ + ...++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 121 ~GD~L~~~a~~~l~~~~~-----~-~~~~~~~~~~~~~--~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~ 192 (352)
T 3nf2_A 121 VGDALFALANEVLLELGT-----V-EAGRATRRLTKAS--RSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACAS 192 (352)
T ss_dssp HHHHHHHHHHHHHHTTCS-----H-HHHHHHHHHHHHH--HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-----c-hHHHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHH
Confidence 599999999999998742 2 2457788889988 99999999999863 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
.+|++++|++++..+.++ ||+++|++|||+||
T Consensus 193 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 225 (352)
T 3nf2_A 193 SIGAVLGGADERTADTLEKYGYHLGLAFQAVDD 225 (352)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=99.91 E-value=3e-24 Score=164.92 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 132 ~GD~Ll~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~ 200 (345)
T 3oyr_A 132 VGDFLFARAFELMVETNS---------MKALEILARAS--RVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAAS 200 (345)
T ss_dssp HHHHHHHHHHHHHHTTTC---------HHHHHHHHHHH--HHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc---------HHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHH
Confidence 599999999999998742 36677788888 89999999999873 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 201 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 233 (345)
T 3oyr_A 201 EAGAVSAGVDVAKSEALRDYGLNLGLAFQLADD 233 (345)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 22
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=99.91 E-value=3.9e-24 Score=166.09 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=91.9
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHH-HHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGL-HTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L-~~~~ 75 (111)
+||+|+++||+++++.. +++....++++.++.+. .+|+.||++|+.++ .+++.|.+|+++|||+| |++|
T Consensus 151 ~GD~Ll~~A~~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~ 224 (380)
T 3lk5_A 151 AGDMALVWAEDMLQDSG----LSAEALARTRDAWRGMR--TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARP 224 (380)
T ss_dssp HHHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHH
Confidence 59999999999999863 35566677788888776 89999999999873 68999999999999999 8999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 76 AACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 76 ~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|.+|++++|++++.++.++ ||+++|+||||+||
T Consensus 225 ~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DD 258 (380)
T 3lk5_A 225 LHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDD 258 (380)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999997
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=99.91 E-value=5.6e-24 Score=163.18 Aligned_cols=97 Identities=19% Similarity=0.389 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 120 ~GD~L~~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~ 188 (341)
T 3mzv_A 120 VGDYLFARSFQLMTDTGN---------MRVMEILANAS--AVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAAT 188 (341)
T ss_dssp HHHHHHHHHHHHHGGGCC---------HHHHHHHHHHH--HHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc---------HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHH
Confidence 599999999999998741 35667788888 89999999999863 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 189 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 221 (341)
T 3mzv_A 189 EVGGIIGGAPEDQVQALFDYGDALGIAFQIVDD 221 (341)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 24
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=99.91 E-value=5.8e-24 Score=161.94 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=88.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 111 ~GD~L~~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~ 179 (325)
T 3aqb_B 111 TGHFLLARALQNIATINN---------SKFHQIFSKTI--LEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASC 179 (325)
T ss_dssp HHHHHHHHHHHHTTTCCC---------HHHHHHHHHHH--HHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCh---------HHHHHHHHHHH--HHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHH
Confidence 599999999999998631 35677788888 89999999999863 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 180 ~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 212 (325)
T 3aqb_B 180 HLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDD 212 (325)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 25
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=8e-24 Score=161.87 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 114 ~GD~L~~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~ 182 (334)
T 3rmg_A 114 AGDYLLATSLVHAEQTNN---------YEIIRLVSSLG--QKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACA 182 (334)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHH--HHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc---------HHHHHHHHHHH--HHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHH
Confidence 599999999999998631 25667778888 99999999999873 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 183 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 215 (334)
T 3rmg_A 183 EAAALSVQVGEEEVAFARLLGEYIGICFQIKDD 215 (334)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 26
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=99.91 E-value=7.8e-24 Score=162.44 Aligned_cols=97 Identities=20% Similarity=0.219 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 134 ~GD~L~~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~ 202 (348)
T 3apz_A 134 AGDFLLSRACGALAALKN---------TEVVALLATAV--EHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSC 202 (348)
T ss_dssp HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHH--HHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC---------HHHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHH
Confidence 599999999999998631 25667788888 99999999999873 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 203 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 235 (348)
T 3apz_A 203 KAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDD 235 (348)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 27
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=99.90 E-value=8.9e-24 Score=163.11 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++.+ + ++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||+
T Consensus 142 aGD~Ll~~A~~~l~~~~------~----~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~ 209 (360)
T 3lmd_A 142 AGDILLAHASGLMSQLG------T----DTVAHFAETF--GELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGY 209 (360)
T ss_dssp HHHHHHHHHHHHHHHHC------H----HHHHHHHHHH--HHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC------H----HHHHHHHHHH--HHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHH
Confidence 59999999999999862 2 5677788888 89999999999874 67899999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|++++..+.++ ||.++|++|||+||
T Consensus 210 lga~laga~~~~~~~l~~~g~~lG~aFQI~DD 241 (360)
T 3lmd_A 210 LGAMHAGAAPEHIDALKNFGAAVGMIFQIVDD 241 (360)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999997
No 28
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=99.90 E-value=1.9e-23 Score=161.13 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----------------CCHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----------------QYVEMTYETY 64 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----------------~~~~~~~~i~ 64 (111)
+||+|+++||+++++.+ ...++++.+++++ ..|+.||++|+.+. .++++|.+|+
T Consensus 112 ~GD~L~~~a~~~l~~~~--------~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i 181 (358)
T 4dhd_A 112 VGIWYREAIEEAVLDTP--------KPTLFAKEVAEVI--KAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMV 181 (358)
T ss_dssp HHHHHHHHHHHHHHTSS--------SHHHHHHHHHHHH--HHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHH
Confidence 59999999999997552 2357778888988 89999999999753 4789999999
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 65 KKNEGGLHTCGAACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 65 ~~KTa~L~~~~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|||+||++||++|++++|++++..+.++ ||.++|++|||+||
T Consensus 182 ~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD 226 (358)
T 4dhd_A 182 SLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDD 226 (358)
T ss_dssp HHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999997
No 29
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=99.90 E-value=2.5e-23 Score=159.14 Aligned_cols=98 Identities=15% Similarity=0.258 Sum_probs=87.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++..+ ++ ++++.+++++ .+|+.||++|+... .++++|.+|+++|||+||++||
T Consensus 123 ~GD~L~~~a~~~l~~~~~----~~----~~~~~~~~~~--~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~ 192 (334)
T 3pko_A 123 AGDFMFTVYFDQVLKSTT----DR----SLIQNHIDAM--HRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSC 192 (334)
T ss_dssp HHHHHHHHHHHHHHHHCC----CH----HHHHHHHHHH--HHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC----CH----HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHH
Confidence 599999999999998742 22 4566678887 99999999999863 7889999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++++..+.++ ||.++|++|||+||
T Consensus 193 ~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD 225 (334)
T 3pko_A 193 YQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDD 225 (334)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999997
No 30
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=99.89 E-value=1.8e-23 Score=157.02 Aligned_cols=94 Identities=13% Similarity=0.185 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc-----cCCHHHHHHHHHhhhHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-----SQYVEMTYETYKKNEGGLHTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~-----~~~~~~~~~i~~~KTa~L~~~~ 75 (111)
+||+|+++||+++++.+ +. ++++.+++++ .+|+.||++|+.+ ..++++|.+|+++|||+||++|
T Consensus 115 ~GD~Ll~~a~~~l~~~~------~~---~~~~~l~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~ 183 (284)
T 2ftz_A 115 AGDGLFFLAFSQISXIG------NS---XIFEEFSETA--YXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFC 183 (284)
T ss_dssp HHHHHHHHHHHHHHTTC------CH---HHHHHHHHHH--HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC------hH---HHHHHHHHHH--HHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHH
Confidence 59999999999999873 22 6777888888 9999999999976 3688999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 76 AACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 76 ~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|++|++++|++++ .++ ||.++|++|||+||
T Consensus 184 ~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD 214 (284)
T 2ftz_A 184 FSAPFILXGXDHT---XMXLLGEXFGVAFQIYDD 214 (284)
T ss_dssp HHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChh---HHHHHHHHHHHHHHHHHh
Confidence 9999999998876 888 99999999999997
No 31
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=99.89 E-value=2e-23 Score=157.65 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---CCHHHHHHHHHhhhHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---QYVEMTYETYKKNEGGLHTCGAA 77 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---~~~~~~~~i~~~KTa~L~~~~~~ 77 (111)
+||+|+++||+++++..+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||+
T Consensus 108 ~GD~L~~~a~~~l~~~~~---------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~ 176 (299)
T 1v4e_A 108 AGDLVLVSAFHTVEEIGN---------NKLRRAFLNVI--GKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQ 176 (299)
T ss_dssp HHHHHHHHHHHHHHHHCC---------HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCh---------HHHHHHHHHHH--HHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHH
Confidence 599999999999998731 36677788888 99999999999864 68999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 78 CGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 78 ~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|++++|+++ +.++ ||.++|++|||+||
T Consensus 177 ~ga~lag~~~---~~l~~~g~~lG~aFQi~DD 205 (299)
T 1v4e_A 177 LPALLEGELG---EDLYNLGVTIGTIYQMFDD 205 (299)
T ss_dssp HHHHHHTCCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999877 8888 99999999999997
No 32
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=99.89 E-value=6.2e-23 Score=157.18 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc-------cCCHHHHHHHHHhhhHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-------SQYVEMTYETYKKNEGGLHT 73 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~-------~~~~~~~~~i~~~KTa~L~~ 73 (111)
+||+|+++||+++++..+ +.....++++.+++++ ..|+.||++|+.+ ..+++.|.+|+++|||+||+
T Consensus 107 ~GD~L~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~ 180 (340)
T 2e8v_A 107 TANYMYFRAMQLVSQLTT----KEPLYHNLITIFNEEL--INLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFR 180 (340)
T ss_dssp HHHHHHHHHHHHGGGGCC----CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----chhhHHHHHHHHHHHH--HHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHH
Confidence 599999999999998742 3445667888889988 9999999999974 24889999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 74 CGAACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 74 ~~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+||.+|++++|+++ +.+.++ ||.++|++|||+||
T Consensus 181 ~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD 215 (340)
T 2e8v_A 181 LTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDD 215 (340)
T ss_dssp HHHHHHHHHCCC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 578889 99999999999997
No 33
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=99.88 E-value=9.1e-23 Score=155.05 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc----CCHHHHHHHHHhhhHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS----QYVEMTYETYKKNEGGLHTCGA 76 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~----~~~~~~~~i~~~KTa~L~~~~~ 76 (111)
+||+|+++||+++++.+ .++++.+++++ .+|+.||++|+.+. .++++|.+|+++|||+||++||
T Consensus 104 ~GD~L~~~a~~~l~~~~----------~~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~ 171 (315)
T 3tc1_A 104 LGDVFYSKAFFELSKMG----------ELIAQALSNAV--LRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASL 171 (315)
T ss_dssp HHHHHHHHHHHHHTTSC----------HHHHHHHHHHH--HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCc----------HHHHHHHHHHH--HHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHH
Confidence 59999999999998762 25667788888 99999999999863 7899999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 77 ACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 77 ~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++|++++|++ .+.++ ||.++|++|||+||
T Consensus 172 ~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD 201 (315)
T 3tc1_A 172 KSMAILLNKD---AKIYADFGLNFGMAFQIIDD 201 (315)
T ss_dssp HHHHHHTTSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 67889 99999999999997
No 34
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=99.88 E-value=3.6e-23 Score=159.44 Aligned_cols=102 Identities=6% Similarity=-0.093 Sum_probs=89.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc--------------------CCHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS--------------------QYVEMT 60 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~--------------------~~~~~~ 60 (111)
+||+|+++||+++++... ++....++++.+++++ ..|+.||++|+.+. .++++|
T Consensus 127 ~Gd~L~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 200 (362)
T 1yhl_A 127 DGIILKSWTQIMAWHYFA----DRPFLKDLLCLFQKVD--YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIY 200 (362)
T ss_dssp HHHHHHHHHHHHHHHHST----TCTTHHHHHHHHHHHH--HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHH--HHHHHHHHHHHHccccccccccccccccccccccCCHHHH
Confidence 499999999999998631 1223457788888888 99999999999754 478999
Q ss_pred HHHHHhhhHHH-HHHHHHHHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 61 YETYKKNEGGL-HTCGAACGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 61 ~~i~~~KTa~L-~~~~~~~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
.+|+++|||+| |++||++|++++| ++++..+.++ ||.++|++|||+||
T Consensus 201 ~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD 251 (362)
T 1yhl_A 201 KRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDD 251 (362)
T ss_dssp HHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999 8888899999 99999999999997
No 35
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=99.88 E-value=4.7e-23 Score=155.04 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHH-HcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcccCCHHHHHHHHHhhhHHHHHHHHHHH
Q 047640 1 MADAMLPFGLELL-ASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTCGAACG 79 (111)
Q Consensus 1 aGD~Ll~~A~~~l-~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~~~~~~~~~i~~~KTa~L~~~~~~~G 79 (111)
+||+|+++||+++ ++.+ + ++++.+++++ .+|+.||++|+.. +++|.+|+++|||+||++||++|
T Consensus 116 aGD~Ll~~a~~~l~~~~~------~----~~~~~~~~~~--~~~~~GQ~~dl~~---~~~y~~~i~~KTa~L~~~a~~~g 180 (289)
T 2azj_A 116 ITNYLIPTALRIIQTSYG------D----DALNTSIELW--KDTSVGALRDMYD---NSDYIRTIELKTGSLFKLSTVLS 180 (289)
T ss_dssp HHHHHHHHHHHHHHHHHC------H----HHHHHHHHHH--HHHHHHHHHTTTT---TSCHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc------H----HHHHHHHHHH--HHHHHHHHHHHhh---HHHHHHHHHcchHHHHHHHHHHH
Confidence 5999999999999 8762 2 4667788888 9999999999975 67789999999999999999999
Q ss_pred HHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 80 AILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 80 ai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
++++ ++++..+.++ ||.++|++|||+||
T Consensus 181 a~la-~~~~~~~~l~~~g~~lG~aFQi~DD 209 (289)
T 2azj_A 181 AYAS-KHYNTKQQMLDVGKYLGIIYQVIDD 209 (289)
T ss_dssp HHHT-TCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999 99999999999997
No 36
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=99.88 E-value=1e-22 Score=155.37 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=86.3
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc------cCCHHHHHHHHHhhhHHH-HH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC------SQYVEMTYETYKKNEGGL-HT 73 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~------~~~~~~~~~i~~~KTa~L-~~ 73 (111)
+||+|+++||+++++..+ .++++. ++++.+++++ .+|+.||++|+.+ ..++++|.+|+++|||+| |+
T Consensus 106 ~GD~L~~~a~~~l~~~~~-~~~~~~---~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~ 179 (330)
T 1wmw_A 106 AGDAMHAEMWGLLAEGLA-RGLFPP---EVLLEFHEVV--RRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAV 179 (330)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSSCH---HHHHHHHHHH--HHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-ccccHH---HHHHHHHHHH--HHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHH
Confidence 599999999999998521 012222 6677788888 9999999999976 368999999999999999 99
Q ss_pred HHHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 74 CGAACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 74 ~~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+||++|++++|+++++. ++ ||.++|++|||+||
T Consensus 180 ~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD 213 (330)
T 1wmw_A 180 APLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDD 213 (330)
T ss_dssp HHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHc
Confidence 99999999999988776 88 99999999999997
No 37
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=99.86 E-value=5.7e-22 Score=153.55 Aligned_cols=102 Identities=12% Similarity=-0.062 Sum_probs=88.2
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc---------CCHHHHHHHHHhhhHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS---------QYVEMTYETYKKNEGGL 71 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~---------~~~~~~~~i~~~KTa~L 71 (111)
+||+|++.+|+++++... ++....++++.+++++ ..++.||++|+.+. .+++.|.+|+++|||+|
T Consensus 152 ~g~~l~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~L 225 (374)
T 2qis_A 152 DANLLEACIYRLLKLYCR----EQPYYLNLIELFLQSS--YQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHHHT----TSTTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhhc----ccccHHHHHHHHHHHH--HHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHH
Confidence 489999999999987521 1112346777788888 99999999999752 57899999999999999
Q ss_pred -HHHHHHHHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 72 -HTCGAACGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 72 -~~~~~~~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|++||.+|++++| +++++.+.++ ||.++|++|||+||
T Consensus 226 sf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DD 265 (374)
T 2qis_A 226 SFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDD 265 (374)
T ss_dssp HTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999 99999999999997
No 38
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=99.86 E-value=4.9e-22 Score=149.32 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcccCCHHHHHHHHHhhhHHHHHHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTCGAACGA 80 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~~~~~~~~~i~~~KTa~L~~~~~~~Ga 80 (111)
+||+|+++||+++++.+ + ++++.+++++ .+|+.||++|+.+..+. |+++|||+||++||++|+
T Consensus 115 aGD~Ll~~A~~~l~~~~------~----~~~~~ls~~~--~~~~~GQ~lDl~~~~~~-----~i~~KTg~Lf~~a~~lGa 177 (285)
T 4fp4_A 115 ASDWLIAESIKMAVNLG------A----DVVTYLADVA--QRLSVGQALDLEGERDK-----AAEFKTAPLIEAALVMPL 177 (285)
T ss_dssp HHHHHHHHHHHHHHTTC------H----HHHHHHHHHH--HHHHHHHHHHHTTCHHH-----HHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh------H----HHHHHHHHHH--HHHHHhHHHHHhccccc-----hhhcCcHHHHHHHHHHHH
Confidence 59999999999999862 2 6677788888 89999999999875221 899999999999999999
Q ss_pred HhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 81 ILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 81 i~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+++|++ ++.+.++ ||.++|++|||+||
T Consensus 178 ~lag~~-~~~~~l~~~G~~lGlAFQI~DD 205 (285)
T 4fp4_A 178 VILGRR-ELIETAKKLGTKLGILYQYSDD 205 (285)
T ss_dssp HHHTCG-GGHHHHHHHHHHHHHHTTCC--
T ss_pred HHcCCh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8889999 99999999999998
No 39
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=99.86 E-value=1.1e-21 Score=151.68 Aligned_cols=101 Identities=13% Similarity=-0.064 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc---------cCCHHHHHHHHHhhhHHH-
Q 047640 2 ADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC---------SQYVEMTYETYKKNEGGL- 71 (111)
Q Consensus 2 GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~---------~~~~~~~~~i~~~KTa~L- 71 (111)
||+++++||+++++... ++....++++.+++++ ..|+.||++|+.+ ..+++.|.+|+++|||+|
T Consensus 146 g~~l~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Ls 219 (367)
T 1uby_A 146 SFLLESSVYRVLKKYCR----QRPYYVHLLELFLQTA--YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYS 219 (367)
T ss_dssp HHHHHHHHHHHHHHHHT----TSTTHHHHHHHHHHHH--HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccccHHHHHHHHHHHH--HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHH
Confidence 45556889999998521 1112356777788888 8999999999975 257899999999999999
Q ss_pred HHHHHHHHHHhCC-CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 72 HTCGAACGAILGG-GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 72 ~~~~~~~Gai~~g-~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|++||.+|++++| ++++..+.++ ||.++|++|||+||
T Consensus 220 f~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD 258 (367)
T 1uby_A 220 FYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDD 258 (367)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 8999999999 99999999999997
No 40
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=99.85 E-value=1.5e-21 Score=147.49 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc-----cCCHHHHHHHHHhhhHHHHHHH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-----SQYVEMTYETYKKNEGGLHTCG 75 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~-----~~~~~~~~~i~~~KTa~L~~~~ 75 (111)
+||+|+++||+++++.++ + ++++.+++++ ..|+.||++|+.+ ..++++|.+|+++|||+||++|
T Consensus 92 ~GD~l~~~a~~~l~~~~~-----~----~~~~~~~~~~--~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~ 160 (301)
T 2q80_A 92 SANYVYFLGLEKVLTLDH-----P----DAVKLFTRQL--LELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLA 160 (301)
T ss_dssp HHHHHHHHHHHHHHTTCC-----T----THHHHHHHHH--HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-----H----HHHHHHHHHH--HHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHH
Confidence 599999999999998742 2 2344567777 8999999999975 2679999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 76 AACGAILGGGSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 76 ~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
|.+|+++++.++ .++ ||.++|++|||+||
T Consensus 161 ~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD 190 (301)
T 2q80_A 161 VGLMQLFSDYKE----DLKPLLNTLGLFFQIRDD 190 (301)
T ss_dssp HHHHHHTCCCCS----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChH----HHHHHHHHHHHHHHHHHH
Confidence 999999999873 478 99999999999997
No 41
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=99.85 E-value=2.7e-21 Score=150.53 Aligned_cols=102 Identities=8% Similarity=-0.003 Sum_probs=84.7
Q ss_pred ChhhHHH--HHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc--------------------cCCHH
Q 047640 1 MADAMLP--FGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC--------------------SQYVE 58 (111)
Q Consensus 1 aGD~Ll~--~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~--------------------~~~~~ 58 (111)
+||+|++ ++|+++++... . ++ ...++++.+++++ ..++.||++|+.+ ..+++
T Consensus 153 ~gD~ll~~a~a~~ll~~~~~--~-~~-~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~ 226 (390)
T 3dyh_A 153 INDGLLLKSWTHMMAMHFFA--D-RP-FLQDLLCRFNRVD--YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLS 226 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-CT-THHHHHHHHHHHH--HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--C-ch-hHHHHHHHHHHHH--HHHHHHHHHHHhhcccccccccccccccccccCCCCHH
Confidence 4899986 55788887421 0 12 2346677778887 8999999999975 26789
Q ss_pred HHHHHHHhhhHHH-HHHHHHHHHHhCCCCHHH-HHHHH-HhHHhhHhhhhhcC
Q 047640 59 MTYETYKKNEGGL-HTCGAACGAILGGGSVEE-IEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 59 ~~~~i~~~KTa~L-~~~~~~~Gai~~g~~~e~-~~~l~-~G~~~GiafQi~D~ 108 (111)
+|.+|+++|||+| |++||++|++++|+++++ .+.++ ||+++|++|||+||
T Consensus 227 ~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DD 279 (390)
T 3dyh_A 227 NYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDD 279 (390)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999998875 78899 99999999999997
No 42
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=99.84 E-value=8e-22 Score=152.58 Aligned_cols=101 Identities=10% Similarity=-0.074 Sum_probs=88.0
Q ss_pred ChhhHH---HHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc-----CCH-HHHHHHHHhhhHHH
Q 047640 1 MADAML---PFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS-----QYV-EMTYETYKKNEGGL 71 (111)
Q Consensus 1 aGD~Ll---~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~-----~~~-~~~~~i~~~KTa~L 71 (111)
+||+|+ +++|+++++.. +.....++++.+++++ .+|+.||++|+.+. .+. +.|.+|+++|||+|
T Consensus 142 ~GD~L~~~a~~a~~ll~~~~-----~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~L 214 (368)
T 2her_A 142 DIFFLKMLSLSLIFELSSVF-----GNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRY 214 (368)
T ss_dssp HHHHHHHHHHHHHTTTHHHH-----CHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----CcChHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHH
Confidence 599999 89999988741 1122568888899998 99999999999863 345 88999999999999
Q ss_pred -HHHHHHHHHHhCCCCHHH--HHHHH-HhHHhhHhhhhhcC
Q 047640 72 -HTCGAACGAILGGGSVEE--IEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 72 -~~~~~~~Gai~~g~~~e~--~~~l~-~G~~~GiafQi~D~ 108 (111)
|++||++|++++|+++++ .+.++ ||+++|++|||+||
T Consensus 215 sf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2her_A 215 TFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888 89999 99999999999997
No 43
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.84 E-value=2.6e-21 Score=150.85 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhc-----------------------c----
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ-----------------------C---- 53 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~-----------------------~---- 53 (111)
+||+|++.+|+++++... ++....++++.+++++ .+|+.||.+|+. .
T Consensus 154 ~gd~L~~~a~~ll~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl 227 (395)
T 2ihi_A 154 DVLLLYNSIYKLIEIYLR----NESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDI 227 (395)
T ss_dssp HHHHHHHHHHHHHHHHHT----TSTTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCG
T ss_pred HHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHH--HHHHHhHHHHHHhhhhcccccccccccccccccccccccc
Confidence 489999999999987421 1123457778888888 999999999991 1
Q ss_pred -cCCHHHHHHHHHhhhHHH-HHHHHHHHHHhCCCCHHH--HHHHH-HhHHhhHhhhhhcC
Q 047640 54 -SQYVEMTYETYKKNEGGL-HTCGAACGAILGGGSVEE--IEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 54 -~~~~~~~~~i~~~KTa~L-~~~~~~~Gai~~g~~~e~--~~~l~-~G~~~GiafQi~D~ 108 (111)
..+++.|.+|+++|||+| |.+|+.+|++++|+++++ .+.++ ||.++|++|||+||
T Consensus 228 ~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD 287 (395)
T 2ihi_A 228 NMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDD 287 (395)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999 999999999999999888 89999 99999999999997
No 44
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=99.84 E-value=1.1e-21 Score=151.74 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhccc------CCHHHHHHHHHhhhHHH-HH
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS------QYVEMTYETYKKNEGGL-HT 73 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~~------~~~~~~~~i~~~KTa~L-~~ 73 (111)
+||+|+++||+++.+..+ ..+++...++++.+++++ ..++.||.+|+.+. .+++.|.+|++.|||.| |.
T Consensus 142 ~Gd~L~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~ 217 (368)
T 2q58_A 142 DIFFLKMLSLSLIFELSS--VFGNDIVMKIQKIYNESI--FFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFY 217 (368)
T ss_dssp HHHHHHHHHHHHHTTTHH--HHCHHHHHHHHHHHHHHH--HHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTH
T ss_pred HHHHHHHHHHHHHHHhcc--ccChHHHHHHHHHHHHHH--HHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccch
Confidence 599999999999987531 123455678888899988 89999999999752 45788999999999998 89
Q ss_pred HHHHHHHHhCC--CCHHHHHHHH-HhHHhhHhhhhhcC
Q 047640 74 CGAACGAILGG--GSVEEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 74 ~~~~~Gai~~g--~~~e~~~~l~-~G~~~GiafQi~D~ 108 (111)
+|+.+|++++| +++++++.++ ||.++|+||||+||
T Consensus 218 ~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 218 MPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 5677888999 99999999999998
No 45
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=99.83 E-value=9.3e-21 Score=147.52 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=84.4
Q ss_pred ChhhHH--HHHHHHHHcCCCCCCCChHHHHHHHHHHHHhhchhHHHHhhHHHhcc-------------------------
Q 047640 1 MADAML--PFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC------------------------- 53 (111)
Q Consensus 1 aGD~Ll--~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~G~~~m~~GQ~lDl~~------------------------- 53 (111)
+||+|+ +.+|+++..... ++....++++.+++++ ..||.||.+|+.+
T Consensus 152 ~GD~ll~~~~~~~ll~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~ 225 (395)
T 3mav_A 152 VNDVLLLYNSIYKLIEIYLR----NESCYVDVIATFRDAT--LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVI 225 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TSTTHHHHHHHHHHHH--HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCC
T ss_pred hhhHHHHHHHHHHHHHHhcc----ChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhccc
Confidence 599877 567888876421 2234567888889988 9999999999953
Q ss_pred ---cCCHHHHHHHHHhhhHHH-HHHHHHHHHHhCCCCH--HHHHHHH-HhHHhhHhhhhhcC
Q 047640 54 ---SQYVEMTYETYKKNEGGL-HTCGAACGAILGGGSV--EEIEKKF-RGLIIKITKMMIRN 108 (111)
Q Consensus 54 ---~~~~~~~~~i~~~KTa~L-~~~~~~~Gai~~g~~~--e~~~~l~-~G~~~GiafQi~D~ 108 (111)
.++++.|.+|+++|||+| |.+|+.+|++++|++. +.++.++ ||.++|+||||+||
T Consensus 226 ~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DD 287 (395)
T 3mav_A 226 DINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDD 287 (395)
T ss_dssp CGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 147899999999999999 9999999999999864 3578899 99999999999998
No 46
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=64.12 E-value=42 Score=24.99 Aligned_cols=65 Identities=6% Similarity=-0.207 Sum_probs=40.1
Q ss_pred hHHHHhhHHHhccc-CCHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhh
Q 047640 41 QGVVEGQYNELQCS-QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKF-RGLIIKITKMMI 106 (111)
Q Consensus 41 ~~m~~GQ~lDl~~~-~~~~~~~~i~~~KTa~L~~~~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~ 106 (111)
..|..|-..|+... .|.+++....+.=-|.....++.+-..-...++. ..... ...++|.|+|+.
T Consensus 121 ~~m~~gm~~dl~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 121 RRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 45677777788644 5788888776555556666666654433322332 23334 777888888875
No 47
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=50.35 E-value=68 Score=23.10 Aligned_cols=60 Identities=8% Similarity=-0.077 Sum_probs=36.6
Q ss_pred hHHHHhhHHHhccc--CCHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHHhhHhhhhh
Q 047640 41 QGVVEGQYNELQCS--QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFRGLIIKITKMMI 106 (111)
Q Consensus 41 ~~m~~GQ~lDl~~~--~~~~~~~~i~~~KTa~L~~~~~~~Gai~~g~~~e~~~~l~~G~~~GiafQi~ 106 (111)
..|+.|...|+... .|.+++..-..+=-|.....++. +++..+++.. .+..++|+|+|+.
T Consensus 107 ~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~~~---~~A~~lG~AlQlt 168 (294)
T 4hd1_A 107 LRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDERA---RLSDATCTALQVA 168 (294)
T ss_dssp HHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHHHH---HHHHHHHHHHHHH
Confidence 67899999999774 67888877654433344443433 4554444332 2566667777764
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=32.34 E-value=1.4e+02 Score=21.34 Aligned_cols=60 Identities=7% Similarity=0.086 Sum_probs=37.9
Q ss_pred hHHHHhhHHHhccc--CCHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH-HhHHhhHhhhhh
Q 047640 41 QGVVEGQYNELQCS--QYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKF-RGLIIKITKMMI 106 (111)
Q Consensus 41 ~~m~~GQ~lDl~~~--~~~~~~~~i~~~KTa~L~~~~~~~Gai~~g~~~e~~~~l~-~G~~~GiafQi~ 106 (111)
..|+.|...|+... .|.+++...++.=-|.+...++.+ ++..+.+ ... ...++|.|+|+.
T Consensus 111 ~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l---~g~~~~~---~~~~~A~~lG~AlQlt 173 (293)
T 3acx_A 111 YNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPI---LSDHETH---QTYDVARRLGESLQLI 173 (293)
T ss_dssp HHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHH---HCSSCCH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCcH---HHHHHHHHHHHHHHHH
Confidence 67899999999764 578888887655445555555543 3333312 234 777777777764
No 49
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=27.08 E-value=49 Score=22.01 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHhh
Q 047640 1 MADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 38 (111)
Q Consensus 1 aGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~i~~~~~~~ 38 (111)
+||++-++-+.+|++... ...++.+|+++
T Consensus 75 aGD~~Sa~fY~lLa~~~~---------~~~i~~lS~aI 103 (147)
T 3aqb_A 75 STDVLSALFYKYLSQPFY---------QHDFLVLTDCV 103 (147)
T ss_dssp HHHHHHHHHHHHTBTTBC---------HHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHcChhh---------HHHHHHHHHHH
Confidence 599999999999997642 35566677766
Done!