RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047640
(111 letters)
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics,
protein structure initiative, NEW YORK structural
genomix research consortium; 2.20A {Antirrhinum majus}
Length = 273
Score = 88.1 bits (219), Expect = 8e-23
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D ++PFGLEL+A S +P NN RILR ++E+TR MGS+G+VEGQY+EL +Q ++
Sbjct: 113 DGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQLNDLELI 172
Query: 63 TY--KKNEGGLHTCGAACGAILGGGSVEEIEK 92
Y KK EG LH CGAACGAILGG ++IEK
Sbjct: 173 EYVCKKKEGTLHACGAACGAILGGCDEDKIEK 204
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase,
isoprene biosynthesis, isoprenyl pyrophosphate synthase,
transferase; 1.90A {Mentha x piperita} PDB: 3krc_B*
3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Length = 274
Score = 79.6 bits (197), Expect = 1e-19
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 6/95 (6%)
Query: 3 DAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTY 61
D ++PFG ELLA S +PA ++ RILRV++E++RA G +G++ G + E + +
Sbjct: 110 DGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIVD-GNTSL 168
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ KK G +H CGAACGAILGG + EEI+K
Sbjct: 169 DFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQK 203
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid
diphosphate synthase; 2.00A {Clostridium perfringens}
Length = 324
Score = 49.6 bits (119), Expect = 2e-08
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L +++L + + L+ + A GS G++ GQ ++ E++ +
Sbjct: 145 DALLNEAMKILV---DYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEISLK 201
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ K G L GA+L S +I+K
Sbjct: 202 ELDYMHLKKTGELIKASIMSGAVLAEASEGDIKK 235
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene
biosynthesis, multifunctional enzyme, carotenoid
biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A
3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Length = 293
Score = 48.7 bits (117), Expect = 3e-08
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 23/104 (22%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L F E LAS+ + + R++R + E+ +A+G++G+V G Q V+++ E
Sbjct: 123 DALLSFAFEHLASATSS-EVSPARVVRAVGELAKAIGTEGLVAG--------QVVDISSE 173
Query: 63 TYKKNEGGLHT--------------CGAACGAILGGGSVEEIEK 92
N GL A G I+GGGS EEIE+
Sbjct: 174 GLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIER 217
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics,
PSI, protein structure initiative, nysgrc; 2.30A
{Legionella pneumophila subsp}
Length = 313
Score = 46.8 bits (112), Expect = 2e-07
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D M +E+L +P + +++ + + A G G+V GQ +L +T E
Sbjct: 121 DGMQALAIEVLLMRLSP-LLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKSSVTEE 179
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ G L E+I+ R
Sbjct: 180 QLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSALR 216
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium
tumefaciens, structural GEN PSI-2, protein structure
initiative; 1.60A {Agrobacterium tumefaciens}
Length = 335
Score = 46.5 bits (111), Expect = 2e-07
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D++L +++AS DNP + R +++ + RA G G+ GQ +L ++ +
Sbjct: 156 DSLLTLAFDIIASDDNPL--AAERKAALVISLARAAGIGGMAGGQALDLA-AEKKAPDED 212
Query: 63 T-----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
K G L GAI+ G + E ++
Sbjct: 213 GIITLQAMKT-GALLRFACEAGAIIAGSNQAERQR 246
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 44.5 bits (106), Expect = 1e-06
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+L EL++ + ++V+ ++ A G G+V GQ ++Q S+ + E
Sbjct: 113 DALLTKAFELIS---SDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLE 168
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
T +K G L T A + E
Sbjct: 169 TLEMIHKTKTGALLTFAVMSAADIANVDDTTKEH 202
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 44.1 bits (105), Expect = 1e-06
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-SQYVEMTY 61
DA+ EL +P ++ + ++ + +A G++G+V GQ ++ + V +T
Sbjct: 112 DALQTLAFELCT---DPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPLTL 168
Query: 62 ET----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ G L + A GAIL G +
Sbjct: 169 DEIIRLQAGKTGALISFAAQAGAILAGADRGPLTA 203
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative,
nysgrc; 2.20A {Streptomyces coelicolor}
Length = 352
Score = 44.2 bits (105), Expect = 1e-06
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ E+L +GR R + + +R +++GQ ++ ++ E
Sbjct: 123 DALFALANEVLLELGTVE---AGRATRRLTKASR-----SLIDGQAQDISYEHRDRVSVE 174
Query: 63 TY-----KKNEGGLHTCGAACGAILGGGSVEEIE 91
K G L C ++ GA+LGG +
Sbjct: 175 ECLEMEGNKT-GALLACASSIGAVLGGADERTAD 207
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 43.8 bits (104), Expect = 2e-06
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L + L ++D PA ++ + A G G+V GQ ++Q S++V +
Sbjct: 121 DGLLTLAFQWLTATDLPAT----MQAALVQALATAAGPSGMVAGQAKDIQ-SEHVNLPLS 175
Query: 63 T-----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+K G L G ILG +
Sbjct: 176 QLRVLHKEKT-GALLHYAVQAGLILGQAPEAQWPA 209
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET:
IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB:
1rqi_A* 2for_A*
Length = 299
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ +L+ +D P + + ++ E+ A G G+ GQ +L ++ + +
Sbjct: 115 DALQTLAFSILSDADMP-EVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLD 172
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
++ G L GA+ G
Sbjct: 173 ALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLD 209
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 43.4 bits (103), Expect = 3e-06
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ + ELL+++ + I+ ++ ++ G +G++ GQ + + + E
Sbjct: 125 DALNTYSFELLSNALLESH----IIVELIKILSANGGIKGMILGQALDCY-FENTPLNLE 179
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
++ L + G + G EE+ K +
Sbjct: 180 QLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQ 216
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.00A
{Enterococcus faecalis}
Length = 302
Score = 43.4 bits (103), Expect = 3e-06
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D +L +LL+ S + +M ++ +A G+QG+V GQ +++ + V +T E
Sbjct: 122 DGLLTGAFQLLSLSQLGLS----EKVLLMQQLAKAAGNQGMVSGQMGDIE-GEKVSLTLE 176
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
++K G L G +L + E I
Sbjct: 177 ELAAVHEKKTGALIEFALIAGGVLANQTEEVIGL 210
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics,
PSI, protein struct initiative, nysgrc; 2.50A {Vibrio
cholerae}
Length = 302
Score = 43.0 bits (102), Expect = 4e-06
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ +LA D A + + + ++ + A G+QG+ GQ +L ++ ++ E
Sbjct: 121 DALQTLAFTILAEGDLSAAGET-QRVAMLQALAEASGAQGMCLGQALDLA-AENRLISLE 178
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
++ G L C GA+ G +
Sbjct: 179 ELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLD 215
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 42.6 bits (101), Expect = 5e-06
Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 9/94 (9%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ +L+ + ++++ + G G+V GQ + + ++
Sbjct: 111 DALNTEAFLVLSHAHLKDE----IKIKLIKTLAFNAGLNGMVIGQAIDCF-FEDKRLSLN 165
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEK 92
+ L G + + EE +
Sbjct: 166 ELEFLHTHKTARLIAAALKMGCEICELNNEESNQ 199
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 42.6 bits (101), Expect = 5e-06
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D + +LA + + + ++ + +A G G+V GQ +L S ++
Sbjct: 121 DGLQALAFHVLAQDPSI-AVPAENRIAMIETLAKASGPAGMVGGQAIDLA-SVGKKLDLP 178
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ + G L + G E +
Sbjct: 179 GLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLD 215
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 41.8 bits (99), Expect = 8e-06
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D + L ++ LR++ + +A G G+V GQ +L S +++ +
Sbjct: 115 DGLQSLAFSALLDPALS-DASAEIRLRMVTTLAQAAGPAGMVGGQAIDLG-SVGLKLDQQ 172
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEE 89
++ G L GA+ G + +
Sbjct: 173 ALEYMHRHKTGALIEASVILGALASGRAEKG 203
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 41.4 bits (98), Expect = 1e-05
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
DA+ F ELL+ NP ++++ E+ A G G++ GQ +L S+ ++
Sbjct: 116 DALQTFAFELLS---NPTSAQPELAIKLIQELVVASGRNGMITGQMIDLS-SENKNISLA 171
Query: 63 T----YKKNEGGLHTCGAACGAILGGGSVEEIEKKFR 95
+ G L GA+ G E K
Sbjct: 172 ELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLD 208
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein
structure initiative, geranylge pyrophosphate synthase;
1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Length = 380
Score = 40.9 bits (96), Expect = 2e-05
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D L + ++L S A + R M V+ GQ ++ + + E
Sbjct: 153 DMALVWAEDMLQDSGLSAEALA-RTRDAWRGMRTE-----VIGGQLLDIYLESHANESVE 206
Query: 63 TY------KKNEGGLHTCGAAC--GAILGGGSVEEIE 91
K +T GA + GGS + I+
Sbjct: 207 LADSVNRFKT---AAYTIARPLHLGASIAGGSPQLID 240
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus
horikoshii}
Length = 342
Score = 40.4 bits (95), Expect = 3e-05
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYE 62
D + E +A ++ P RV+ + +A S + EGQ +L+ + +T E
Sbjct: 115 DLLFSKAFEAVARAEIPPEKK----ARVLEVIVKA--SNELCEGQARDLEFEKKSTVTIE 168
Query: 63 TY----KKNEGGLHTCGAACGAILGGGSVEEIE 91
Y G L A G I+G + E I+
Sbjct: 169 EYMEMISGKTGALFEASAKVGGIIGTDNEEYIK 201
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate
synthase, structural genom riken structural
genomics/proteomics initiative; 1.55A {Thermus
thermophilus}
Length = 330
Score = 36.1 bits (84), Expect = 8e-04
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 19/97 (19%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL--QCSQYVEMT 60
DAM LLA +L E+ R GQ+ +L ++
Sbjct: 108 DAMHAEMWGLLAEGLARGLFPP-EVLLEFHEVVRR-----TAYGQHLDLLWTLGGTFDLR 161
Query: 61 YETY------KKNEGGLHTCGAAC--GAILGGGSVEE 89
E Y K +T A GA+L G +
Sbjct: 162 PEDYFRMVAHKA---AYYTAVAPLRLGALLAGKTPPA 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.006
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 39 GSQGVVEGQYNELQCSQYVEMTYETYK 65
G QG + + EL+ Y+TY
Sbjct: 161 GGQGNTDDYFEELR------DLYQTYH 181
Score = 30.8 bits (69), Expect = 0.077
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 45/119 (37%)
Query: 5 MLPFGLELLASS----------DNPAGNNSG-RILRVM----VEMTRAMGSQGVVEGQY- 48
M G++L +S DN + G IL ++ V +T G + G+
Sbjct: 1631 M---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRI 1684
Query: 49 NELQCSQYVEMTYETYKKNEGGLHTCGAACGAILGGGSVEEIEKKFRGLIIKITKMMIR 107
E Y M +ET + + EK F+ + T R
Sbjct: 1685 REN----YSAMIFETIVDGK-------------------LKTEKIFKEINEHSTSYTFR 1720
Score = 27.7 bits (61), Expect = 0.76
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 52 QCSQYVEMTYETYKKNE 68
Q SQ M + YK ++
Sbjct: 1624 QGSQEQGMGMDLYKTSK 1640
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 33.1 bits (76), Expect = 0.011
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 28/106 (26%)
Query: 3 DAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL----------- 51
E + + P + + E+ +A+ EG+ ++
Sbjct: 114 IWYREAIEEAVLDTPKPT-----LFAKEVAEVIKAI-----DEGERLDILFEAAGRSDPY 163
Query: 52 -QCSQYVEMTYETY-----KKNEGGLHTCGAACGAILGGGSVEEIE 91
+++ E+T + Y K G L A G + E
Sbjct: 164 FVQARWREVTLDDYIKMVSLKT-GALIAAAAKWGVLSVSDDRGLAE 208
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
fold, chroloplast, TRAN isoprenoid biosynthetic process;
2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Length = 348
Score = 29.3 bits (66), Expect = 0.23
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 15/91 (16%)
Query: 9 GLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQYVEMTYETY-KKN 67
LA+ N ++ ++ + V G+ E+ S + + Y +K
Sbjct: 142 ACGALAALKNT------EVVALLATAVEHL-----VTGETMEITSSTEQRYSMDYYMQKT 190
Query: 68 EG---GLHTCGAACGAILGGGSVEEIEKKFR 95
L + A+L G + E F
Sbjct: 191 YYKTASLISNSCKAVAVLTGQTAEVAVLAFE 221
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 25.3 bits (55), Expect = 5.3
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 3 DAMLPFGLELLASS----DNPAGNNSGR-----ILRVMVEMTRAMGSQGVVEGQYNE 50
D +L L LL + N + S R + RV M QGV+ G+++
Sbjct: 187 DGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDN 243
>2bas_A YKUI protein; EAL domain, structural genom protein structure
initiative, midwest center for structural genomics,
MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP:
c.1.33.1 d.110.6.2 PDB: 2w27_A*
Length = 431
Score = 24.7 bits (54), Expect = 9.2
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 16 SDNPAGNNSGRILRVMVEMTRAMGSQGVVEG 46
+ + +L + + R +G+ + E
Sbjct: 204 KVSQPSPSYEHVLYSISLLARKIGAALLYED 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,694,540
Number of extensions: 89901
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 34
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)