RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047640
         (111 letters)



>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone
           demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 449

 Score = 26.0 bits (55), Expect = 1.3
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 10/69 (14%)

Query: 38  MGSQGVVEGQYNELQCSQYVEMTYETYKKNEGGLHTCGAAC---------GAILGG-GSV 87
           M + G     Y+ +        +     +    L   G            GA+L G    
Sbjct: 381 MVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 440

Query: 88  EEIEKKFRG 96
             I  +F G
Sbjct: 441 GRIADQFLG 449


>d3duea1 d.98.2.1 (A:20-145) Putative periplasmic protein BVU2987
           {Bacteroides vulgatus [TaxId: 821]}
          Length = 126

 Score = 23.6 bits (51), Expect = 5.7
 Identities = 3/22 (13%), Positives = 9/22 (40%)

Query: 84  GGSVEEIEKKFRGLIIKITKMM 105
              + +IE+      +K++   
Sbjct: 90  DAKMLKIERDKHDYEVKLSNGW 111


>d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 308

 Score = 23.2 bits (48), Expect = 9.5
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 1   MADAMLPFGLELLASSDNPAGNNSGRILRVM 31
              A    G+E+   +D+ A   +  +   +
Sbjct: 246 DWPAFAAAGVEVALGTDSVASGETLNVREEV 276


>d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable
           catalytic domain {Thermotoga maritima [TaxId: 2336]}
          Length = 281

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 1   MADAMLPFGLELLASSDNPAGNNSGRILRVM 31
               M+  G+++   +D  A NNS  +   M
Sbjct: 214 PVQRMIEHGMKVTLGTDGAASNNSLNLFFEM 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 403,255
Number of extensions: 16388
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 7
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)