BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047641
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG 61
+N + VK++L + +++G TPLH A E VV++ + + A K+ +G
Sbjct: 13 ENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG--ADPNAKDSDG 70
Query: 62 RV------ETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFM 115
+ E VV++L + D P + ++ GK PL++A E G E+V +LLS
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
Query: 116 SHGSPSGKTALHAA 129
+ G+T L A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 30/114 (26%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG 61
+N + VK +LS +++G TPLH A E NG
Sbjct: 79 ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE------------------------NG 114
Query: 62 RVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFM 115
E VV++L + D P ++++ G+ PL +A E G E+V +L ++
Sbjct: 115 HKE-----VVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG 61
+N + VK++L +++G TPLH A E +V++ + +K A K+ +G
Sbjct: 13 ENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL--SKGADPNAKDSDG 70
Query: 62 RV------ETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFM 115
R E +V++L K D P + ++ G+ PL+ A E G E+V +LLS
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129
Query: 116 SHGSPSGKTALHAA 129
+ G+T L A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
P ++++ G+ PL+ A E G E+V +LLS + G+T LH AA
Sbjct: 30 PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 78
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG 61
+N + VK+++ + +++G TPLH A E VV++ I +K A K+ +G
Sbjct: 13 ENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKDSDG 70
Query: 62 RV------ETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFM 115
R E VV++L K D + ++ G+ PL+ A E G E+V +L+S +
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Query: 116 SHGSPSGKTAL 126
+ G+T L
Sbjct: 130 NTSDSDGRTPL 140
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++++ G+ PL+ A E G E+V +L+S ++ G+T LH AA
Sbjct: 32 ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRV------ETAIIHVVEILSRKDP 79
G TPLH A VV++ ++ A K+ NGR + VV++L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 80 DYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
D N G+ PL++A G LE+V +LL ++ +G+T LH AAR
Sbjct: 60 DVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 21 QVNAEGD---TPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAIIH----VVEI 73
VNAE D TPLH A +V V +K DK + + A ++ +VE+
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 74 LSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
L + D + + YG PL++A + G LE+V+VLL ++ GKTA
Sbjct: 99 LLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++ GK PL++A KG LE+V+VLL ++ G T LH AA
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D +A+ G PL++A G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLH 118
Query: 128 AAA 130
AA
Sbjct: 119 LAA 121
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 21 QVNA---EGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKE---------PNGRVETAII 68
VNA +G TPLH A +V V +K D + NG +E
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLE---- 94
Query: 69 HVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+VE+L + D + + YG PL++A ++G LE+V+VLL ++ GKTA
Sbjct: 95 -IVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 70 VVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAA 129
+VE+L + D + + G PL++A + G LE+V+VLL ++ G T LH A
Sbjct: 62 IVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Query: 130 A 130
A
Sbjct: 121 A 121
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++ G PL++A G E+V+VLL ++ G T LH AA
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH A F +V V +K D + A + +VE+L + D
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV 106
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
S +++G PL++A ++G LE+V+VLL ++ GKTA
Sbjct: 107 NAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + ++ G PL++A +G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKNGADV-NAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLH 118
Query: 128 AAAR 131
AA+
Sbjct: 119 LAAK 122
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
G PL++A G LE+V+VLL ++ G T LH AAR
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAAR 89
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 64 ETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGK 123
+T + +VE+L + D + +NYG PL++A + G LE+V+VLL ++ G
Sbjct: 56 KTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGF 114
Query: 124 TALHAAARE 132
T LH AA +
Sbjct: 115 TPLHLAAYD 123
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDK---------EPNGRVETAIIHVVEILSR 76
G TPLH A + +V V +K D NG +E +VE+L +
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLE-----IVEVLLK 101
Query: 77 KDPDYPYSANNY-GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
D +A +Y G PL++A G LE+V+VLL ++ GKTA
Sbjct: 102 HGADV--NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
G PL++A + G LE+V+VLL ++ G T LH AA
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 21 QVNAE---GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEI 73
VNAE GDTPLH A +V V +K D + + A + +VE+
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 74 LSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
L + D + + G PL++A + G LE+V+VLL ++ GKTA
Sbjct: 99 LLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
+ YG PL++A G LE+V+VLL ++ SG T LH AA+
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + + G PL++A +G LE+V+VLL ++ G T LH
Sbjct: 48 LEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 128 AAARE 132
AARE
Sbjct: 107 LAARE 111
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
G PL++A +G LE+V+VLL ++ G T LH AARE
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKD 78
+ +G TPLH A +V V +K DK+ + A + +VE+L +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 79 PDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKT 124
D + + G PL++A +G LE+V+VLL ++ GKT
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + + G PL++A +G LE+V+VLL ++ G T LH
Sbjct: 48 LEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 128 AAARE 132
AARE
Sbjct: 107 LAARE 111
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKD 78
+ +G TPLH A +V V +K DK+ + A + +VE+L +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 79 PDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
D + + G PL++A +G LE+V+VLL ++ GKT A RE
Sbjct: 92 ADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIRE 144
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + + G PL++A +G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 118
Query: 128 AAARE 132
AARE
Sbjct: 119 LAARE 123
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
G PL++A +G LE+V+VLL ++ G T LH AARE
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKD 78
+ +G TPLH A +V V +K DK+ + A + +VE+L +
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 79 PDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
D + + G PL++A +G LE+V+VLL ++ GKTA
Sbjct: 104 ADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG 61
+N + VK+++ + +++G TPLH A + +V++ I +K A K+ +G
Sbjct: 13 ENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKDSDG 70
Query: 62 RV------ETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFM 115
R + +V++L K D + ++ G+ PL+ A ++G E+V +L+S +
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV 129
Query: 116 SHGSPSGKTALHAA 129
+ G+T L A
Sbjct: 130 NTSDSDGRTPLDLA 143
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
++++ G+ PL+ A ++G E+V +L+S ++ G+T LH AA+E
Sbjct: 32 ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 80
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAII---HVVEILSRKDPDYP 82
G TPLH AV ++V++ + R NG I + VE+ +R Y
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPH--SPAWNGYTPLHIAAKQNQVEV-ARSLLQYG 235
Query: 83 YSANN---YGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
SAN G PL++A ++G EMV +LLS + G+ SG T LH A+E
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE 288
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 8 FVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIK-RAKV-AQHGDKEPNGRVET 65
VK +L S N + +TPLH A + V + ++ +AKV A+ D +
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 66 AIIH--VVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGK 123
I H +V++L + + P A G PL++A +G +E V LL + + G
Sbjct: 89 RIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF 147
Query: 124 TALHAAAR 131
T LH AA+
Sbjct: 148 TPLHVAAK 155
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 90 KMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
+ PL+ A G MV +LL + + +G T LH AARE
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 85 ANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
N G PL++ ++G + + DVL+ + + G T LH A+
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D +A+ YG PL++A G LE+V+VLL ++ +G T LH
Sbjct: 60 LEIVEVLLKHGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLH 118
Query: 128 AAARE 132
AA E
Sbjct: 119 LAADE 123
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 65 TAIIHVVEILSRKDPDYPYSANNY---GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPS 121
T + +VE+L + Y N + G PL++A ++G LE+V+VLL ++
Sbjct: 90 TGHLEIVEVLLK----YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 122 GKTAL 126
GKTA
Sbjct: 146 GKTAF 150
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+ +N G PL++A G LE+V+VLL + G T LH AA
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH V ++ V +K A DK + A + +VE+L + D
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 82 PYSANNY-GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+A +Y G PL++A E G LE+V+VLL ++ GKTA
Sbjct: 107 --NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 84 SANNY-GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+AN++ G PL++ V G LE+++VLL ++ SG T LH AA
Sbjct: 41 NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 63 VETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSG 122
V + ++E+L + D S + G PL++A +G LE+V+VLL ++ G
Sbjct: 55 VNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQG 113
Query: 123 KTALHAAARE 132
T LH AA +
Sbjct: 114 YTPLHLAAED 123
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 60 NGRVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGS 119
NG +E VV++L D N G+ PL++A G LE+V +LL ++
Sbjct: 12 NGHLE-----VVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 120 PSGKTALHAAAR 131
+G+T LH AAR
Sbjct: 66 KNGRTPLHLAAR 77
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
G+ PL++A G LE+V +LL ++ +G+T LH AAR
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + ++ G PL++A ++G LE+V+VLL ++ +G T LH
Sbjct: 60 LEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Query: 128 AAAR 131
AA
Sbjct: 119 LAAN 122
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH A F +V V +K D + A + VVE+L + D
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +N G PL++A G LE+V+VLL ++ GKTA
Sbjct: 107 NANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 71 VEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
V IL D S ++ G PL++A G LE+V+VLL ++ G T LH AA
Sbjct: 30 VRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA 88
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAII----HVVEILSRKD 78
+A G TPLH A + +V V +K D + + A + +VE+L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 79 PDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
D + + +G PL++A G LE+V+VLL ++ GKTA
Sbjct: 104 ADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + + G PL++A G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLH 118
Query: 128 AAA 130
AA
Sbjct: 119 LAA 121
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH A + +V V +K D + + A + +VE+L + D
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV 106
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+N G PL++A +G LE+V+VLL ++ GKTA
Sbjct: 107 NAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + + G PL++A G LE+V+VLL ++ +G T LH
Sbjct: 60 LEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLH 118
Query: 128 AAAR 131
AA
Sbjct: 119 LAAN 122
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+A+ G PL++A G LE+V+VLL ++ G T LH AA
Sbjct: 42 AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA 88
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAII----HVVEILSRKD 78
+A G TPLH A + +V V +K D + + A + +VE+L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 79 PDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
D + + +G PL++A G LE+V+VLL ++ GKTA
Sbjct: 104 ADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++YG+ PL+MA G LE+V+VLL ++ +G T LH AA
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA 76
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L R D N G PL++A G LE+V+VLL ++ +G T L+
Sbjct: 48 LEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLY 106
Query: 128 AAA 130
AA
Sbjct: 107 LAA 109
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH A +V V ++ D + A + +VE+L + D
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ + G PLY+A G LE+V+VLL ++ GKTA
Sbjct: 95 N-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 71 VEILSRKDPDYPYSANNY-GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAA 129
V IL+ D +AN+Y G PL++A G LE+V+VLL ++ +G+T LH A
Sbjct: 30 VRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 130 A 130
A
Sbjct: 88 A 88
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + N G+ PL++A LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D S + +G PL++A G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLH 118
Query: 128 AAAR 131
AA+
Sbjct: 119 LAAK 122
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+A+N G PL++A G LE+V+VLL + G T LH AA
Sbjct: 42 AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEILSRKDPDY 81
G TPLH A +V V +K D + A + +VE+L + D
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ ++ G PL++A + G LE+V+VLL ++ GKTA
Sbjct: 107 N-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D S +++G+ PL++A G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++ G PL++A ++G LE+V+VLL ++ G+T LH AA
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + +N+G PL++A +G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
G PL++A + G LE+V+VLL ++ G T LH AA
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 60 NGRVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGS 119
NG++E +VE+L + D S ++ G PL++A G LE+V+VLL ++
Sbjct: 49 NGQLE-----IVEVLLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 120 PSGKTALHAAA 130
+G T LH AA
Sbjct: 103 RAGWTPLHLAA 113
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 71 VEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
V IL D + +N G PL++A G LE+V+VLL ++ +G T LH AA
Sbjct: 22 VRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAA 80
Query: 131 RE 132
+
Sbjct: 81 YD 82
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 22 VNAEGD---TPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAI----IHVVEIL 74
VNA D TPLH A +V V +K D + A + +VE+L
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 75 SRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLL 109
+ D + + G PL++A G LE+V+VLL
Sbjct: 92 LKHGADVN-AYDRAGWTPLHLAALSGQLEIVEVLL 125
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 21 QVNAE---GDTPLHAAVEFCLSNVVRVHIKRA---KVAQHGDKEPNGRVETAIIH--VVE 72
VNAE G TPLH A +V V +K H P R+ H +VE
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL-RLAALFGHLEIVE 97
Query: 73 ILSRKDPDYPYSANNY-GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+L + D +AN+ G PL++A G LE+V+VLL ++ GKTA
Sbjct: 98 VLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ +VE+L + D + ++ G PL +A G LE+V+VLL ++ G T LH
Sbjct: 60 LEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Query: 128 AAA 130
AA
Sbjct: 119 LAA 121
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
G PL++A G LE+V+VLL ++ +G T L AA
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 21 QVNA---EGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEP----NGRVETAIIHVVEI 73
VNA +G TPLH A +V V +K D + T + +VE+
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 74 LSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
L + D + +N G PL++A + G LE+V+VLL ++ GKTA
Sbjct: 99 LLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAF 150
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 60 NGRVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGS 119
NG +E +VE+L + D S + G PL++A G LE+V+VLL ++
Sbjct: 57 NGHLE-----IVEVLLKNGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYD 110
Query: 120 PSGKTALHAAAR 131
G T LH AA+
Sbjct: 111 NDGHTPLHLAAK 122
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 84 SANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+ +N G PL++A G LE+V+VLL ++ +G T LH AA
Sbjct: 42 ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D S + +G+ PL++A G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++ G PL++A ++G LE+V+VLL ++ G+T LH AA
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
+ YG PLY+A G LE+V+VLL ++ G T LH AA
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + + G PL++A G LE+ +VLL ++ GKTA
Sbjct: 60 LEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
++ G PL++A ++G LE+V+VLL ++ G+T LH AA
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + + +G+ PL++A G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 63 VETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSG 122
V T V++L + D G+ PL AVE L MV +LL ++ SG
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 123 KTALHAAA 130
+ALH+A+
Sbjct: 184 SSALHSAS 191
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 26 GDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRV------ETAIIHVVEILSRKDP 79
G TPLHAAV V ++ + R + + +G AI +VE L D
Sbjct: 84 GRTPLHAAVAADAMGVFQI-LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 80 DYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
D +A+N GK L+ A E V++LL + +T L AARE
Sbjct: 143 DI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 194
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + +N G PL++A G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
G PL++A + LE+V+VLL ++ G T LH AA
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAA 88
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 5 STKFVKEIL-SICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRA---KVAQHGDKEP- 59
TK VKEIL + +V+ EG+TPL+ AV + + I R + P
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 60 -----NGRVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLL 109
GR E + +L PD N YG L A EKG ++ V +LL
Sbjct: 77 LYAGAQGRTEI----LAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLL 126
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 23 NAEGDTPLHAAVEFCLSNVVRVHIKRAKV----AQHGDKEPN-GRVETAIIHVVEILSRK 77
+AEG T LH A + VV+ + ++ G P E + +V++L K
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 78 DPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
D +N + L+ A GC+++ ++LL+ + + G + LH AARE
Sbjct: 134 GSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 20 LQVNAEGD---TPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETA----IIHVVE 72
+ VN + D TP+ A E+ ++V++ + + D E N + A + + E
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161
Query: 73 ILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
IL D ++ N +G PL++A + + V + LS + ++ + G+T L A+
Sbjct: 162 ILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
G PL++A +G LE+V+VLL ++ GKTA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAF 72
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLST------YTFMSHGSPSGKTALHAAA 130
G PL++A E+GCL V VL + ++ + + +G T LH A+
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLST------YTFMSHGSPSGKTALHAAA 130
G PL++A E+GCL V VL + ++ + + +G T LH A+
Sbjct: 75 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
G PL+ A + G E V LLS ++ S G T LH AA+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 2 KNASTKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRV 44
KN + VK++LS + + +G+TPLH A + + +V++
Sbjct: 18 KNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAAR 131
G PL++A + G E+V +LL+ ++ S G T H A +
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 6 TKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAK----VAQHGDKEPNG 61
T+ V+ +L + + + + G +PLH A +V+ + + V Q+G P
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG-CTPLH 111
Query: 62 RVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPS 121
+ H + ++ + P + ++Y ++ A KG L+MV +LL +
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 122 GKTALHAAARE 132
G T LH A E
Sbjct: 172 GNTPLHLACDE 182
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
P++ + G PL++A + G +VLL + +T LH AA E
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 6 TKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAK----VAQHGDKEPNG 61
T+ V+ +L + + + + G +PLH A +V+ + + V Q+G P
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG-CTPLH 111
Query: 62 RVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPS 121
+ H + ++ + P + ++Y ++ A KG L+MV +LL +
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
Query: 122 GKTALHAAARE 132
G T LH A E
Sbjct: 172 GNTPLHLACDE 182
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 68 IHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
+ +VE+L + D + + G+ PL++ G LE+V+VLL ++ GKTA
Sbjct: 60 LEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
G PL++A LE+V+VLL ++ G+T LH A
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 6 TKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG---- 61
T+ V+ +L + + + + G +PLH A +V+ + K AQ NG
Sbjct: 54 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPL 111
Query: 62 -RVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSP 120
+ H + ++ + P + ++Y ++ A KG L+M+ +LL +
Sbjct: 112 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 171
Query: 121 SGKTALHAAARE 132
G T LH A E
Sbjct: 172 EGNTPLHLACDE 183
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Query: 6 TKFVKEILSICLSLLQVNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNG---- 61
T+ V+ +L + + + + G +PLH A +V+ + K AQ NG
Sbjct: 53 TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPL 110
Query: 62 -RVETAIIHVVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSP 120
+ H + ++ + P + ++Y ++ A KG L+M+ +LL +
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 170
Query: 121 SGKTALHAAARE 132
G T LH A E
Sbjct: 171 EGNTPLHLACDE 182
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 71 VEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
V IL D N G PL++A G LE+V +LL ++ GKTA
Sbjct: 22 VRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAF 76
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In
Complex With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In
Complex With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex
With O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 17 LSLLQVNAEGDTPLH-----AAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAIIHVV 71
LSL +V+ + PLH AAV+ + +K + D +G++ T ++
Sbjct: 12 LSLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDP 71
Query: 72 EILSRKDPDY 81
+ SRKDP Y
Sbjct: 72 DAPSRKDPKY 81
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 22 VNAEGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAIIHVVEILSRKDPDY 81
VN+EGDTPL A E + +++ + R V +E A I+ R +
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGV----------DIEAARKEEERIMLRDARQW 184
Query: 82 PYSAN-------NYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
S + G L++A KG E++ +L+ ++ G T LHAAA
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLST-YTFMSHGSPSGKTAL 126
GK PL +AVEK L +V LL + ++ GKTAL
Sbjct: 239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 GKMPLYMAVEKGCLEMVDVLLST-YTFMSHGSPSGKTAL 126
GK PL +AVEK L +V LL + ++ GKTAL
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 71 VEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTAL 126
V IL D N G PL++A G LE+V +LL + GKTA
Sbjct: 40 VRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF 94
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 6 TKFVKEILSICLSLLQVNA 24
TKF+ +I S CL+LLQV A
Sbjct: 770 TKFLSQIESDCLALLQVRA 788
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 82 PYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAARE 132
P + G PL A G E+V +LL ++ + G TALH A E
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE 195
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 70 VVEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAA 129
V E+L RK + ++ PL++A E+ ++++VL M+ G+TALH A
Sbjct: 229 VAELLLRKGANVNEKNKDF-MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287
Query: 130 A 130
A
Sbjct: 288 A 288
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 97 VEKGCLEMVDVLLSTYTFMSHGSPSGK---TALHAAAR 131
VE G M+D+ TY F++ SPS T L A R
Sbjct: 237 VEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPR 274
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 71 VEILSRKDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALHAAA 130
VE L + D P ++ G PL+ A G L++V++LL ++ + LH AA
Sbjct: 26 VEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84
Query: 131 R 131
+
Sbjct: 85 K 85
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTY 112
NN + PL++A +G E VLL +
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHF 181
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 21 QVNAEGDTPLHAAVEFCLSNVVRVHIK---RAKVAQHGDKEP-NGRVETAIIHVVEILSR 76
Q + G+T LH A + S+ + ++ A + + + P + V V +IL R
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79
Query: 77 KDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ + G PL +A M++ L++++ ++ GK+ALH
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 21 QVNAEGDTPLHAAVEFCLSNVVRVHIK---RAKVAQHGDKEP-NGRVETAIIHVVEILSR 76
Q + G+T LH A + S+ + ++ A + + + P + V V +IL R
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 77 KDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ + G PL +A M++ L++++ ++ GK+ALH
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTY 112
NN + PL++A +G E VLL +
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 21 QVNAEGDTPLHAAVEFCLSNVVRVHIK---RAKVAQHGDKEP-NGRVETAIIHVVEILSR 76
Q + G+T LH A + S+ + ++ A + + + P + V V +IL R
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 112
Query: 77 KDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ + G PL +A M++ L++++ ++ GK+ALH
Sbjct: 113 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTY 112
NN + PL++A +G E VLL +
Sbjct: 188 NNREETPLFLAAREGSYETAKVLLDHF 214
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 86 NNYGKMPLYMAVEKGCLEMVDVLLSTY 112
NN + PL++A +G E VLL +
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 21 QVNAEGDTPLHAAVEFCLSNVVRVHIK---RAKVAQHGDKEP-NGRVETAIIHVVEILSR 76
Q + G+T LH A + S+ + ++ A + + + P + V V +IL R
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLR 76
Query: 77 KDPDYPYSANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
+ + G PL +A M++ L++++ ++ GK+ALH
Sbjct: 77 NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 25 EGDTPLHAAVEFCLSNVVRVHIKRAKVAQHGDKEPNGRVETAIIHVVEILSRKDPDYPYS 84
EG T LH AV N+VR + R + R ++ H P++
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASV-------SARATGSVFHY----------RPHN 116
Query: 85 ANNYGKMPLYMAVEKGCLEMVDVLLSTYTFMSHGSPSGKTALH 127
YG+ PL A G E+V +L+ + G T LH
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,778,299
Number of Sequences: 62578
Number of extensions: 134869
Number of successful extensions: 464
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 167
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)