BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047642
(718 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 24/158 (15%)
Query: 579 RLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRH 638
+ D +L HL++ L E P + L+T+ + N LP+ I+ L++LR
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRE 154
Query: 639 LIAR----------PLGHLQVS----TLTNLQTLKYVNFQQWDAVDA-----RNLINLQE 679
L R PL S L NLQ+L+ +W + + NL NL+
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL----EWTGIRSLPASIANLQNLKS 210
Query: 680 LEIREIPYTNMN-FILQVNSLRSLTLQTDTAFNTLLPL 716
L+IR P + + I + L L L+ TA P+
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 4 AAVLYAVQRLSDLLTQEAVFLQGVRGEVLWLQRELTRMQGFLKXXXXXXXXXXGV--RRW 61
AA+ + +L +LLT+E +GV+ + L +EL L + W
Sbjct: 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLW 60
Query: 62 VSEVRNAAYDAEDIVDTFMVQ 82
EVR +Y ED+VD F+VQ
Sbjct: 61 ADEVRELSYVIEDVVDKFLVQ 81
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 130/297 (43%), Gaps = 44/297 (14%)
Query: 187 ISILGMGGLGKTTLARKLV-NSTDVKGGFDCRA-WVCVTQEYTTRDL--LQKTIKSFQKP 242
++I GM G GK+ LA + V + + ++G F WV V ++ + L LQ +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVI 302
+ L + E L + + R L+++DD+W +W + +AF + +I++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSW--VLKAF---DSQCQILL 262
Query: 303 TTRNEPVA-MITDEKNFVYKLRFLNQEESWKLFC-----KKA-FPDTADGQATVC--SPG 353
TTR++ V + K V L +E+ ++ KKA P+ A C SP
Sbjct: 263 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP- 321
Query: 354 LEKLGREMVEKCREEIPHEWH----TVKNHLWWHLTQDSDH----VSPILALSYDELPYQ 405
L ++ + P+ W ++N + + + S + + +++S + L
Sbjct: 322 ---LVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378
Query: 406 LKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMEN-VAEEYLKELIDRSMI 461
+K + LS+ +D + T+ L LW DME E+ L+E +++S++
Sbjct: 379 IKDYYTDLSILQKDVKVPTKVLCILW-----------DMETEEVEDILQEFVNKSLL 424
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 187 ISILGMGGLGKTTLARKLV-NSTDVKGGFDCRA-WVCVTQEYTTRDL--LQKTIKSFQKP 242
++I GM G GK+ LA + V + + ++G F WV + ++ + L LQ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVI 302
+ L + E L + + R L+++DD+W W + +AF N +I++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPW--VLKAFD---NQCQILL 262
Query: 303 TTRNEPVA-MITDEKNFVYKLRFLNQEESWKLFC------KKAFPDTADGQATVC--SPG 353
TTR++ V + K+ V L +E+ ++ K+ P A C SP
Sbjct: 263 TTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP- 321
Query: 354 LEKLGREMVEKCREEIPHEW----HTVKNHLWWHLTQDSDH----VSPILALSYDELPYQ 405
L ++ + P+ W ++N + + + S + + +++S + L
Sbjct: 322 ---LVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378
Query: 406 LKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELIDRSMI 461
+K + LS+ +D + T+ L LW E EE +D+ L+E +++S++
Sbjct: 379 IKDYYTDLSILQKDVKVPTKVLCVLWDLE---TEEVEDI-------LQEFVNKSLL 424
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 557 SLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTM 616
+L LRVLDL R+ L +G L+YF F N + P GNL L+ +
Sbjct: 268 NLSNLRVLDLSHNRLT------SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Query: 617 VASGNSCWK 625
GN K
Sbjct: 322 GVEGNPLEK 330
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 576 KVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQ 635
++ ++ +I K L NSL E P I NL L+ + S N LP+++ Q
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 636 LRHL 639
L++
Sbjct: 295 LKYF 298
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 129/297 (43%), Gaps = 44/297 (14%)
Query: 187 ISILGMGGLGKTTLARKLV-NSTDVKGGFDCRA-WVCVTQEYTTRDL--LQKTIKSFQKP 242
++I GM G GK+ LA + V + + ++G F WV V ++ + L LQ +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVI 302
+ L + E L + + R L+++DD+W +W + +AF +I++
Sbjct: 216 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSW--VLKAFDSQ---CQILL 268
Query: 303 TTRNEPVA-MITDEKNFVYKLRFLNQEESWKLFC-----KKA-FPDTADGQATVC--SPG 353
TTR++ V + K V L +E+ ++ KKA P+ A C SP
Sbjct: 269 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP- 327
Query: 354 LEKLGREMVEKCREEIPHEWH----TVKNHLWWHLTQDSDH----VSPILALSYDELPYQ 405
L ++ + P+ W ++N + + + S + + +++S + L
Sbjct: 328 ---LVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 384
Query: 406 LKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMEN-VAEEYLKELIDRSMI 461
+K + LS+ +D + T+ L LW DME E+ L+E +++S++
Sbjct: 385 IKDYYTDLSILQKDVKVPTKVLCILW-----------DMETEEVEDILQEFVNKSLL 430
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 649 VSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREIPYTNMNFILQVNSLRSLTLQTDT 708
+ L NL L+ + Q D +NL + ELE+ P N++ I + S+++L L T T
Sbjct: 65 IQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL-TST 123
Query: 709 AFNTLLPLS 717
+ PL+
Sbjct: 124 QITDVTPLA 132
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 17/107 (15%)
Query: 606 SIGNLQCLK---TMVASGNSCWKLPSQISKLHQLRHLIARPLGHLQVSTL----TNLQTL 658
S+G+L+ L ++S +S W P +S L L +L+ P L V++L TNLQTL
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYL-NLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 659 KYVN---FQQWDAVDARNLINLQELEIREIPYTNMNFILQVNSLRSL 702
+ N F + +D L +L ELEI+ + N Q SL+S+
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----QSQSLKSI 171
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 166 FEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG 213
F E L +Q E+Q F + G+ G GK+TLAR L GG
Sbjct: 351 FPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 17/107 (15%)
Query: 606 SIGNLQCLK---TMVASGNSCWKLPSQISKLHQLRHLIARPLGHLQVSTL----TNLQTL 658
S+G+L+ L ++S +S W P +S L L +L+ P L V++L TNLQTL
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGP--LSSLKYL-NLMGNPYQTLGVTSLFPNLTNLQTL 154
Query: 659 KYVN---FQQWDAVDARNLINLQELEIREIPYTNMNFILQVNSLRSL 702
+ N F + +D L +L ELEI+ + N Q SL+S+
Sbjct: 155 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY----QSQSLKSI 197
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 128/296 (43%), Gaps = 42/296 (14%)
Query: 187 ISILGMGGLGKTTLARKLV-NSTDVKGGFDCRA-WVCVTQEYTTRDL--LQKTIKSFQKP 242
++I GM G GK+ LA + V + + ++G F WV + ++ + L LQ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVI 302
+ L + E L + + R L+++DD+W W + +AF N +I++
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPW--VLKAFD---NQCQILL 269
Query: 303 TTRNEPVA-MITDEKNFVYKLRFLNQEESWKLFC------KKAFPDTADGQATVC--SPG 353
TT ++ V + K+ V L +E+ ++ K+ P A C SP
Sbjct: 270 TTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP- 328
Query: 354 LEKLGREMVEKCREEIPHEW----HTVKNHLWWHLTQDSDH----VSPILALSYDELPYQ 405
L ++ + P+ W ++N + + + S + + +++S + L
Sbjct: 329 ---LVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 385
Query: 406 LKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELIDRSMI 461
+K + LS+ +D + T+ L LW E EE +D+ L+E +++S++
Sbjct: 386 IKDYYTDLSILQKDVKVPTKVLCVLWDLE---TEEVEDI-------LQEFVNKSLL 431
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
Cerevisiae
pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
From S. Cerevisiae
Length = 655
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 138 TERNRSLTERFRHIRRTSSNAGNEQVVGFEENTK 171
+E ++ ER R+ +R +EQVV F EN+K
Sbjct: 102 SEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSK 135
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 189 ILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLE 248
+LG G G+ L + + + C + + R + QKT K + + +++
Sbjct: 39 VLGKGSFGEVILCKDKITGQE-----------CAVKVISKRQVKQKTDK---ESLLREVQ 84
Query: 249 LMERMTEEDLELHLYEFLEGRRYLVVVDDIW 279
L++++ ++ + LYEF E + Y +V +++
Sbjct: 85 LLKQLDHPNI-MKLYEFFEDKGYFYLVGEVY 114
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 558 LRFLRVLDLEDTRIEHSGKV-LRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTM 616
L L VLDL I + V L+D G+L HL G K + V+ R + NL+ L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-NLEFLD-- 206
Query: 617 VASGNSCWKLP--SQISKLHQLRHLIARPLGHLQ--VSTLTNLQTLKYVNFQQWDAVDAR 672
V+S N +P S L L + G +ST T L+ L + Q +
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 673 NLINLQELEIREIPYT 688
L +LQ L + E +T
Sbjct: 267 PLKSLQYLSLAENKFT 282
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 558 LRFLRVLDLEDTRIEHSGKVL-RLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTM 616
L L VLDL I + V L+D G+L HL G K + V+ R + NL+ L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-NLEFLD-- 203
Query: 617 VASGNSCWKLP--SQISKLHQLRHLIARPLGHLQ--VSTLTNLQTLKYVNFQQWDAVDAR 672
V+S N +P S L L + G +ST T L+ L + Q +
Sbjct: 204 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 673 NLINLQELEIREIPYT 688
L +LQ L + E +T
Sbjct: 264 PLKSLQYLSLAENKFT 279
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 186 VISILGMGGLGKTTLARKL-VNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKI 244
+I ++G GG+GKTT+A + V D+ GFD + + L ++ + Q +I
Sbjct: 329 LIMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSDPAAHLSMT-LNGSLNNLQVSRI 385
Query: 245 EDLELMERMTEEDLELHLYEFLE-GRRYL 272
+ E ER + LE E E G+R L
Sbjct: 386 DPHEETERYRQHVLETKGKELDEAGKRLL 414
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 189 ILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLE 248
+LG G G+ L + + + C + + R + QKT K + + +++
Sbjct: 56 VLGKGSFGEVILCKDKITGQE-----------CAVKVISKRQVKQKTDK---ESLLREVQ 101
Query: 249 LMERMTEEDLELHLYEFLEGRRYLVVVDDIW 279
L++++ ++ + LYEF E + Y +V +++
Sbjct: 102 LLKQLDHPNI-MKLYEFFEDKGYFYLVGEVY 131
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 189 ILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLE 248
+LG G G+ L + + + C + + R + QKT K + + +++
Sbjct: 33 VLGKGSFGEVILCKDKITGQE-----------CAVKVISKRQVKQKTDK---ESLLREVQ 78
Query: 249 LMERMTEEDLELHLYEFLEGRRYLVVVDDIW 279
L++++ ++ + LYEF E + Y +V +++
Sbjct: 79 LLKQLDHPNI-MKLYEFFEDKGYFYLVGEVY 108
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 189 ILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLE 248
+LG G G+ L + + + C + + R + QKT K + + +++
Sbjct: 57 VLGKGSFGEVILCKDKITGQE-----------CAVKVISKRQVKQKTDK---ESLLREVQ 102
Query: 249 LMERMTEEDLELHLYEFLEGRRYLVVVDDIW 279
L++++ ++ + LYEF E + Y +V +++
Sbjct: 103 LLKQLDHPNI-MKLYEFFEDKGYFYLVGEVY 132
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 557 SLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTM 616
SL L VLDL ++ + + +L+HL+ CN L E PR I L L +
Sbjct: 86 SLTQLTVLDLGTNQL-----TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHL 140
Query: 617 VASGNSCWKLP-SQISKLHQLRH 638
N +P +L L H
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 392 SPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKL-IRLWIAEG 435
S +L+LSY ELP Q + C LY+++F D+ ++ L + +WI G
Sbjct: 65 SDLLSLSYTELPRQSEDC-LYVNVFAPDT--PSQNLPVMVWIHGG 106
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 392 SPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKL-IRLWIAEG 435
S +L+LSY ELP Q + C LY+++F D+ ++ L + +WI G
Sbjct: 65 SDLLSLSYKELPRQSEDC-LYVNVFAPDT--PSQNLPVMVWIHGG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,682,777
Number of Sequences: 62578
Number of extensions: 857826
Number of successful extensions: 2664
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2635
Number of HSP's gapped (non-prelim): 50
length of query: 718
length of database: 14,973,337
effective HSP length: 106
effective length of query: 612
effective length of database: 8,340,069
effective search space: 5104122228
effective search space used: 5104122228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)