Query 047642
Match_columns 718
No_of_seqs 553 out of 3860
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 13:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.2E-83 7E-88 729.4 41.3 683 3-711 2-731 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.8E-52 8.2E-57 501.0 37.5 453 157-662 180-713 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-41 5.4E-46 350.0 15.5 264 166-437 1-282 (287)
4 KOG0617 Ras suppressor protein 99.6 6.2E-18 1.3E-22 149.1 -3.3 156 530-696 32-195 (264)
5 KOG0444 Cytoskeletal regulator 99.6 1.2E-17 2.7E-22 173.9 -3.0 176 530-711 193-376 (1255)
6 PLN00113 leucine-rich repeat r 99.6 6.3E-16 1.4E-20 187.1 11.0 174 530-712 163-347 (968)
7 KOG0444 Cytoskeletal regulator 99.6 2.4E-17 5.2E-22 171.8 -1.8 195 508-711 54-259 (1255)
8 KOG0617 Ras suppressor protein 99.6 1.4E-17 3E-22 146.9 -5.1 150 555-710 29-186 (264)
9 PLN00113 leucine-rich repeat r 99.6 1.6E-15 3.5E-20 183.6 10.7 198 507-713 162-372 (968)
10 KOG0472 Leucine-rich repeat pr 99.3 2.4E-14 5.2E-19 142.8 -5.6 170 530-711 113-289 (565)
11 PRK00411 cdc6 cell division co 99.3 6.1E-10 1.3E-14 120.7 24.5 309 158-477 27-374 (394)
12 KOG0472 Leucine-rich repeat pr 99.3 9.6E-14 2.1E-18 138.5 -6.3 188 512-711 71-266 (565)
13 PRK04841 transcriptional regul 99.2 1E-09 2.2E-14 132.3 25.3 289 161-489 14-333 (903)
14 PLN03210 Resistant to P. syrin 99.2 4E-11 8.6E-16 146.0 11.8 121 508-641 588-711 (1153)
15 KOG4194 Membrane glycoprotein 99.2 5.7E-12 1.2E-16 131.6 3.2 190 510-709 150-353 (873)
16 KOG4194 Membrane glycoprotein 99.2 4.7E-12 1E-16 132.2 2.3 195 507-711 171-379 (873)
17 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 136.7 -2.4 152 550-709 89-246 (722)
18 PRK15370 E3 ubiquitin-protein 99.2 4.8E-11 1.1E-15 135.9 9.4 178 507-710 197-380 (754)
19 TIGR02928 orc1/cdc6 family rep 99.2 5.2E-09 1.1E-13 112.2 23.7 295 160-465 14-351 (365)
20 COG2909 MalT ATP-dependent tra 99.1 2.9E-09 6.2E-14 117.4 19.7 283 171-490 25-340 (894)
21 PRK15387 E3 ubiquitin-protein 99.1 1.6E-10 3.4E-15 131.1 8.5 58 653-713 402-461 (788)
22 KOG0618 Serine/threonine phosp 99.0 3.3E-11 7.2E-16 132.6 0.1 154 548-709 299-488 (1081)
23 PF05729 NACHT: NACHT domain 99.0 2.5E-09 5.5E-14 100.6 12.2 141 185-337 1-162 (166)
24 PRK15370 E3 ubiquitin-protein 99.0 1.1E-09 2.4E-14 124.9 9.3 173 512-710 181-359 (754)
25 cd00116 LRR_RI Leucine-rich re 98.9 1.7E-09 3.6E-14 113.8 6.6 179 530-710 80-291 (319)
26 KOG0618 Serine/threonine phosp 98.9 5.2E-10 1.1E-14 123.4 1.8 194 508-712 218-467 (1081)
27 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.4E-14 100.1 5.3 78 556-641 16-95 (175)
28 KOG0532 Leucine-rich repeat (L 98.9 1.2E-10 2.6E-15 121.7 -3.9 165 530-707 97-270 (722)
29 TIGR00635 ruvB Holliday juncti 98.9 6.9E-08 1.5E-12 100.7 16.7 271 161-464 4-289 (305)
30 COG4886 Leucine-rich repeat (L 98.8 1.8E-09 3.8E-14 117.1 3.7 170 530-711 115-291 (394)
31 PRK00080 ruvB Holliday junctio 98.8 8.1E-08 1.7E-12 100.9 16.0 272 160-464 24-310 (328)
32 cd00116 LRR_RI Leucine-rich re 98.8 3.4E-09 7.4E-14 111.4 5.7 200 508-708 80-318 (319)
33 PRK06893 DNA replication initi 98.8 8.2E-08 1.8E-12 95.1 13.8 154 184-380 39-207 (229)
34 PF01637 Arch_ATPase: Archaeal 98.8 1.2E-08 2.7E-13 101.8 7.1 170 163-338 1-204 (234)
35 TIGR03015 pepcterm_ATPase puta 98.7 1.1E-06 2.4E-11 89.9 20.6 188 169-367 27-230 (269)
36 PRK15387 E3 ubiquitin-protein 98.7 2.7E-08 5.8E-13 113.2 9.3 160 508-695 301-467 (788)
37 KOG4237 Extracellular matrix p 98.7 1.2E-09 2.7E-14 109.5 -1.3 103 528-639 64-169 (498)
38 PF13173 AAA_14: AAA domain 98.7 9.1E-08 2E-12 85.5 9.0 120 184-329 2-126 (128)
39 COG2256 MGS1 ATPase related to 98.7 1.5E-07 3.3E-12 95.7 11.0 142 158-336 27-174 (436)
40 KOG1259 Nischarin, modulator o 98.6 6.5E-09 1.4E-13 100.6 0.5 124 587-711 283-413 (490)
41 COG4886 Leucine-rich repeat (L 98.6 2E-08 4.3E-13 108.9 2.9 151 555-711 112-269 (394)
42 KOG4237 Extracellular matrix p 98.6 5E-09 1.1E-13 105.2 -2.0 124 507-640 65-194 (498)
43 KOG4658 Apoptotic ATPase [Sign 98.6 4.1E-08 8.8E-13 114.1 4.1 144 530-685 522-678 (889)
44 PF13401 AAA_22: AAA domain; P 98.5 2.2E-07 4.8E-12 83.5 8.0 115 184-306 4-125 (131)
45 cd01128 rho_factor Transcripti 98.5 2.5E-07 5.4E-12 91.8 8.5 95 184-280 16-114 (249)
46 PTZ00112 origin recognition co 98.5 3.4E-06 7.4E-11 94.3 16.9 176 158-340 752-951 (1164)
47 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.3E-11 80.6 11.1 123 164-308 1-131 (151)
48 PRK09376 rho transcription ter 98.5 2.3E-07 4.9E-12 95.8 7.0 107 172-280 158-267 (416)
49 PF14580 LRR_9: Leucine-rich r 98.5 2E-07 4.2E-12 86.9 5.8 77 558-641 41-120 (175)
50 PRK13342 recombination factor 98.5 1E-06 2.2E-11 95.5 11.4 143 161-338 12-164 (413)
51 KOG1259 Nischarin, modulator o 98.4 2.4E-08 5.1E-13 96.8 -1.7 122 530-664 283-410 (490)
52 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.3E-12 70.2 3.9 59 559-623 1-61 (61)
53 PF13191 AAA_16: AAA ATPase do 98.4 9.2E-07 2E-11 84.8 8.0 50 162-211 1-51 (185)
54 KOG3207 Beta-tubulin folding c 98.4 9.7E-08 2.1E-12 97.5 0.8 170 530-707 145-336 (505)
55 PLN03150 hypothetical protein; 98.4 5.1E-07 1.1E-11 102.8 6.5 99 560-663 419-525 (623)
56 KOG3207 Beta-tubulin folding c 98.3 9.7E-08 2.1E-12 97.5 -0.1 174 530-709 120-313 (505)
57 KOG2028 ATPase related to the 98.3 3.2E-06 6.9E-11 84.5 9.7 126 183-336 161-292 (554)
58 PTZ00202 tuzin; Provisional 98.3 7.2E-06 1.6E-10 85.2 12.6 164 156-336 257-432 (550)
59 PLN03150 hypothetical protein; 98.3 8E-07 1.7E-11 101.2 6.3 100 533-641 420-522 (623)
60 TIGR01242 26Sp45 26S proteasom 98.3 3E-06 6.5E-11 90.4 10.3 157 158-341 119-309 (364)
61 PRK07003 DNA polymerase III su 98.3 3.4E-05 7.4E-10 86.2 18.0 192 160-368 15-213 (830)
62 PRK12402 replication factor C 98.3 6.5E-06 1.4E-10 87.2 12.2 169 161-339 15-198 (337)
63 PF12799 LRR_4: Leucine Rich r 98.3 9.5E-07 2.1E-11 61.8 3.5 41 588-628 1-41 (44)
64 PRK05564 DNA polymerase III su 98.2 1.5E-05 3.3E-10 83.1 14.2 152 162-337 5-164 (313)
65 TIGR00767 rho transcription te 98.2 3.7E-06 8E-11 87.5 8.7 96 184-281 168-267 (415)
66 TIGR02903 spore_lon_C ATP-depe 98.2 9.1E-06 2E-10 91.9 12.4 176 161-339 154-367 (615)
67 PRK14961 DNA polymerase III su 98.2 2.1E-05 4.6E-10 83.6 14.4 169 161-339 16-192 (363)
68 COG1474 CDC6 Cdc6-related prot 98.2 6.7E-05 1.5E-09 79.0 17.5 171 161-339 17-204 (366)
69 PRK13341 recombination factor 98.2 8.7E-06 1.9E-10 92.9 11.4 143 161-338 28-181 (725)
70 TIGR03420 DnaA_homol_Hda DnaA 98.2 7.4E-06 1.6E-10 81.4 9.5 136 167-338 23-172 (226)
71 PRK08727 hypothetical protein; 98.2 1.4E-05 3E-10 79.4 11.2 141 184-366 41-195 (233)
72 PRK08084 DNA replication initi 98.2 3.8E-05 8.2E-10 76.4 14.2 154 184-380 45-213 (235)
73 PF13855 LRR_8: Leucine rich r 98.2 1.9E-06 4E-11 65.7 3.7 54 588-641 1-56 (61)
74 PRK04195 replication factor C 98.2 2.5E-05 5.4E-10 86.5 14.1 170 161-366 14-193 (482)
75 PRK14957 DNA polymerase III su 98.1 2.4E-05 5.3E-10 86.1 13.2 153 161-338 16-191 (546)
76 PRK14960 DNA polymerase III su 98.1 4.4E-05 9.6E-10 84.3 14.7 171 160-339 14-191 (702)
77 COG3899 Predicted ATPase [Gene 98.1 0.00012 2.7E-09 85.7 19.2 302 163-487 2-385 (849)
78 PRK14949 DNA polymerase III su 98.1 3.1E-05 6.8E-10 88.1 13.5 168 161-338 16-191 (944)
79 PLN03025 replication factor C 98.1 2.6E-05 5.6E-10 81.6 11.9 176 161-367 13-192 (319)
80 KOG2543 Origin recognition com 98.1 6.5E-05 1.4E-09 76.2 13.7 172 160-336 5-191 (438)
81 PRK05642 DNA replication initi 98.1 6.2E-05 1.3E-09 74.8 13.7 153 185-380 46-212 (234)
82 PRK08691 DNA polymerase III su 98.1 0.00016 3.4E-09 80.8 18.0 191 160-367 15-212 (709)
83 PRK14963 DNA polymerase III su 98.1 4.3E-05 9.3E-10 84.1 13.5 169 161-340 14-190 (504)
84 TIGR02880 cbbX_cfxQ probable R 98.1 5.2E-05 1.1E-09 77.5 13.2 156 162-339 23-209 (284)
85 PRK14962 DNA polymerase III su 98.0 6.2E-05 1.3E-09 82.1 14.2 150 161-339 14-190 (472)
86 PRK06645 DNA polymerase III su 98.0 6.7E-05 1.4E-09 82.2 14.4 174 161-340 21-202 (507)
87 CHL00181 cbbX CbbX; Provisiona 98.0 0.00018 3.8E-09 73.6 16.5 157 162-340 24-211 (287)
88 PRK03992 proteasome-activating 98.0 8.2E-05 1.8E-09 79.8 14.3 155 159-340 129-317 (389)
89 PRK00440 rfc replication facto 98.0 7.6E-05 1.6E-09 78.4 13.5 155 161-340 17-176 (319)
90 TIGR02881 spore_V_K stage V sp 98.0 9.1E-05 2E-09 75.1 13.3 156 162-339 7-192 (261)
91 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.2E-11 95.8 -1.2 167 530-709 94-267 (414)
92 PRK12323 DNA polymerase III su 98.0 5.8E-05 1.3E-09 83.2 12.2 176 160-339 15-197 (700)
93 PRK09087 hypothetical protein; 97.9 8.7E-05 1.9E-09 73.1 12.0 132 184-366 44-186 (226)
94 PRK14956 DNA polymerase III su 97.9 8.6E-05 1.9E-09 79.8 12.7 191 160-367 17-214 (484)
95 PHA02544 44 clamp loader, smal 97.9 6.6E-05 1.4E-09 78.7 11.9 147 160-335 20-170 (316)
96 PF00308 Bac_DnaA: Bacterial d 97.9 0.00018 3.9E-09 70.6 13.8 178 171-380 20-212 (219)
97 KOG1909 Ran GTPase-activating 97.9 5.7E-06 1.2E-10 82.6 2.8 155 553-709 86-282 (382)
98 PRK14951 DNA polymerase III su 97.9 0.00012 2.6E-09 81.9 13.4 174 160-339 15-197 (618)
99 PF05496 RuvB_N: Holliday junc 97.9 7.6E-05 1.7E-09 71.3 10.1 176 160-378 23-223 (233)
100 TIGR00678 holB DNA polymerase 97.9 0.00031 6.6E-09 67.5 14.6 70 268-337 95-167 (188)
101 PRK14964 DNA polymerase III su 97.9 0.00017 3.6E-09 78.5 13.8 176 160-367 12-209 (491)
102 TIGR02397 dnaX_nterm DNA polym 97.9 0.00022 4.8E-09 76.1 14.8 173 161-367 14-210 (355)
103 KOG2227 Pre-initiation complex 97.9 0.00021 4.5E-09 74.5 13.6 177 158-340 147-340 (529)
104 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 56.6 2.8 41 559-605 1-41 (44)
105 PRK07994 DNA polymerase III su 97.9 0.00011 2.4E-09 82.3 12.4 170 160-338 15-191 (647)
106 PRK07940 DNA polymerase III su 97.9 0.0002 4.3E-09 76.3 13.7 165 162-336 6-187 (394)
107 PRK11331 5-methylcytosine-spec 97.8 4.8E-05 1E-09 80.7 8.5 69 161-233 175-243 (459)
108 PRK14958 DNA polymerase III su 97.8 0.00021 4.4E-09 79.0 13.8 170 160-338 15-191 (509)
109 PRK07764 DNA polymerase III su 97.8 0.0016 3.5E-08 75.7 21.5 169 161-338 15-192 (824)
110 KOG1859 Leucine-rich repeat pr 97.8 7.9E-07 1.7E-11 96.1 -5.4 118 590-708 166-290 (1096)
111 PRK14955 DNA polymerase III su 97.8 0.00013 2.9E-09 78.5 11.5 175 161-338 16-199 (397)
112 PRK14970 DNA polymerase III su 97.8 0.00023 5.1E-09 76.1 13.3 155 161-340 17-182 (367)
113 PRK05896 DNA polymerase III su 97.8 0.00016 3.6E-09 79.8 11.7 171 160-339 15-192 (605)
114 PRK14969 DNA polymerase III su 97.8 0.00029 6.4E-09 78.3 13.9 150 161-338 16-191 (527)
115 TIGR03689 pup_AAA proteasome A 97.8 0.00026 5.7E-09 77.2 12.9 161 160-338 181-378 (512)
116 KOG0531 Protein phosphatase 1, 97.8 3.8E-06 8.2E-11 91.4 -1.4 150 553-710 89-245 (414)
117 KOG1909 Ran GTPase-activating 97.7 4.4E-06 9.5E-11 83.4 -1.1 180 530-709 91-310 (382)
118 PRK14952 DNA polymerase III su 97.7 0.00037 8E-09 77.7 13.7 171 161-339 13-191 (584)
119 PRK07471 DNA polymerase III su 97.7 0.0005 1.1E-08 72.6 14.1 173 160-338 18-213 (365)
120 PRK14087 dnaA chromosomal repl 97.7 0.00065 1.4E-08 74.1 15.3 169 184-380 141-323 (450)
121 PRK08116 hypothetical protein; 97.7 0.0002 4.4E-09 72.4 10.0 102 185-307 115-221 (268)
122 PTZ00454 26S protease regulato 97.7 0.00044 9.6E-09 73.8 12.4 155 159-339 143-330 (398)
123 PRK08903 DnaA regulatory inact 97.7 0.00025 5.3E-09 70.4 9.9 136 164-337 22-169 (227)
124 PF05621 TniB: Bacterial TniB 97.7 0.0034 7.3E-08 63.1 17.7 197 160-367 33-253 (302)
125 TIGR02639 ClpA ATP-dependent C 97.6 0.00033 7.1E-09 81.6 12.2 154 161-338 182-358 (731)
126 PRK09111 DNA polymerase III su 97.6 0.00055 1.2E-08 76.8 13.4 173 160-339 23-205 (598)
127 PRK14954 DNA polymerase III su 97.6 0.0006 1.3E-08 76.6 13.7 177 160-338 15-199 (620)
128 PRK10536 hypothetical protein; 97.6 0.0004 8.6E-09 68.3 10.7 132 161-307 55-213 (262)
129 KOG3665 ZYG-1-like serine/thre 97.6 1.4E-05 3E-10 91.0 0.6 122 559-685 122-260 (699)
130 TIGR00362 DnaA chromosomal rep 97.6 0.001 2.2E-08 72.2 15.1 132 184-340 136-283 (405)
131 PRK15386 type III secretion pr 97.6 7.5E-05 1.6E-09 78.4 6.0 78 530-629 51-133 (426)
132 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.3E-10 69.9 -0.4 79 557-641 51-130 (177)
133 PRK14950 DNA polymerase III su 97.6 0.0015 3.2E-08 74.0 16.5 190 161-367 16-213 (585)
134 PRK14088 dnaA chromosomal repl 97.6 0.0015 3.3E-08 71.2 15.9 133 184-340 130-278 (440)
135 PRK09112 DNA polymerase III su 97.6 0.00098 2.1E-08 70.0 14.0 173 159-337 21-212 (351)
136 PRK06620 hypothetical protein; 97.6 0.00033 7.2E-09 68.3 9.6 128 185-366 45-180 (214)
137 PRK14959 DNA polymerase III su 97.6 0.0011 2.4E-08 73.8 14.3 170 161-340 16-193 (624)
138 PTZ00361 26 proteosome regulat 97.6 0.00047 1E-08 74.2 11.1 154 161-340 183-369 (438)
139 PRK14971 DNA polymerase III su 97.6 0.0017 3.7E-08 73.4 16.1 150 161-339 17-194 (614)
140 smart00382 AAA ATPases associa 97.6 0.00035 7.7E-09 63.1 8.9 89 185-283 3-92 (148)
141 PF00004 AAA: ATPase family as 97.6 0.00029 6.3E-09 63.1 8.1 21 187-207 1-21 (132)
142 PRK14086 dnaA chromosomal repl 97.6 0.0015 3.3E-08 72.4 15.0 162 185-380 315-492 (617)
143 PRK07133 DNA polymerase III su 97.5 0.001 2.3E-08 75.2 13.5 161 161-338 18-190 (725)
144 PRK12422 chromosomal replicati 97.5 0.00045 9.7E-09 75.1 10.1 132 184-340 141-286 (445)
145 KOG4579 Leucine-rich repeat (L 97.5 1.5E-05 3.3E-10 68.8 -1.1 88 532-629 54-141 (177)
146 PRK14953 DNA polymerase III su 97.5 0.0019 4.1E-08 71.0 14.7 153 161-338 16-191 (486)
147 PRK00149 dnaA chromosomal repl 97.5 0.0013 2.8E-08 72.4 13.1 132 184-340 148-295 (450)
148 CHL00176 ftsH cell division pr 97.5 0.002 4.3E-08 73.0 14.7 155 160-340 182-368 (638)
149 PRK06305 DNA polymerase III su 97.5 0.0011 2.5E-08 72.2 12.4 153 160-338 16-193 (451)
150 PRK08118 topology modulation p 97.4 5.8E-05 1.2E-09 70.6 2.0 34 186-219 3-37 (167)
151 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00072 1.6E-08 79.5 11.3 152 161-337 187-362 (852)
152 COG3903 Predicted ATPase [Gene 97.4 0.00019 4.1E-09 74.1 5.3 279 183-490 13-316 (414)
153 TIGR01241 FtsH_fam ATP-depende 97.4 0.0032 6.8E-08 70.2 15.4 156 159-340 53-240 (495)
154 TIGR00763 lon ATP-dependent pr 97.4 0.0078 1.7E-07 70.7 19.3 47 161-207 320-370 (775)
155 PRK10787 DNA-binding ATP-depen 97.4 0.0021 4.6E-08 74.7 14.0 47 160-206 321-371 (784)
156 CHL00095 clpC Clp protease ATP 97.4 0.00087 1.9E-08 79.1 10.8 153 161-336 179-352 (821)
157 KOG2120 SCF ubiquitin ligase, 97.3 1.5E-05 3.2E-10 77.8 -3.4 165 511-685 187-373 (419)
158 PRK14965 DNA polymerase III su 97.3 0.002 4.4E-08 72.6 13.0 169 160-338 15-191 (576)
159 PRK08451 DNA polymerase III su 97.3 0.0037 8E-08 68.8 14.6 170 161-339 14-190 (535)
160 KOG3665 ZYG-1-like serine/thre 97.3 8.4E-05 1.8E-09 84.7 1.9 126 586-711 120-264 (699)
161 KOG1859 Leucine-rich repeat pr 97.3 8.5E-06 1.8E-10 88.4 -5.9 106 550-664 178-290 (1096)
162 PF02562 PhoH: PhoH-like prote 97.3 0.00058 1.3E-08 65.3 6.8 53 165-221 4-56 (205)
163 PRK12377 putative replication 97.3 0.00074 1.6E-08 67.1 7.7 37 184-222 101-137 (248)
164 PF04665 Pox_A32: Poxvirus A32 97.3 0.0012 2.6E-08 64.7 8.9 37 184-222 13-49 (241)
165 KOG2982 Uncharacterized conser 97.3 0.00012 2.5E-09 71.7 1.8 43 670-712 219-264 (418)
166 PRK14948 DNA polymerase III su 97.2 0.0045 9.8E-08 70.0 14.4 172 161-339 16-194 (620)
167 PRK06647 DNA polymerase III su 97.2 0.0054 1.2E-07 68.6 14.7 170 161-339 16-192 (563)
168 KOG0989 Replication factor C, 97.2 0.0014 3.1E-08 64.9 8.8 181 160-367 35-222 (346)
169 COG1222 RPT1 ATP-dependent 26S 97.2 0.0061 1.3E-07 61.8 13.2 155 160-341 150-338 (406)
170 PRK10865 protein disaggregatio 97.2 0.0018 3.9E-08 76.4 11.1 45 161-207 178-222 (857)
171 COG1373 Predicted ATPase (AAA+ 97.2 0.0042 9.1E-08 66.7 13.1 118 186-332 39-161 (398)
172 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0015 3.3E-08 77.4 10.5 45 161-207 173-217 (852)
173 PF05673 DUF815: Protein of un 97.2 0.0026 5.5E-08 61.9 9.9 121 158-310 24-154 (249)
174 PRK06921 hypothetical protein; 97.2 0.00058 1.3E-08 69.0 5.6 37 184-222 117-154 (266)
175 PRK11034 clpA ATP-dependent Cl 97.1 0.00075 1.6E-08 77.8 7.0 154 161-338 186-362 (758)
176 PRK12608 transcription termina 97.1 0.0023 5.1E-08 66.5 9.8 108 169-280 119-231 (380)
177 TIGR02639 ClpA ATP-dependent C 97.1 0.0019 4E-08 75.4 10.3 47 161-207 454-507 (731)
178 PRK08181 transposase; Validate 97.1 0.001 2.2E-08 67.0 6.8 35 185-221 107-141 (269)
179 KOG2120 SCF ubiquitin ligase, 97.1 5.4E-05 1.2E-09 74.0 -2.2 173 530-710 184-376 (419)
180 PHA00729 NTP-binding motif con 97.1 0.0045 9.7E-08 60.0 10.4 34 172-207 7-40 (226)
181 COG0593 DnaA ATPase involved i 97.1 0.01 2.2E-07 62.7 13.9 136 183-342 112-261 (408)
182 PF13177 DNA_pol3_delta2: DNA 97.1 0.0059 1.3E-07 56.8 10.9 134 167-326 3-162 (162)
183 KOG2982 Uncharacterized conser 97.1 0.00022 4.7E-09 69.9 1.3 169 530-705 70-287 (418)
184 PRK05563 DNA polymerase III su 97.0 0.01 2.2E-07 66.7 14.6 170 160-339 15-192 (559)
185 PRK06526 transposase; Provisio 97.0 0.0009 1.9E-08 67.0 5.6 23 185-207 99-121 (254)
186 KOG0744 AAA+-type ATPase [Post 97.0 0.0025 5.5E-08 63.4 8.3 82 184-281 177-262 (423)
187 KOG1644 U2-associated snRNP A' 97.0 0.00049 1.1E-08 63.9 3.1 102 560-685 43-150 (233)
188 PRK08058 DNA polymerase III su 97.0 0.0094 2E-07 62.5 13.1 165 163-336 7-180 (329)
189 PRK07952 DNA replication prote 97.0 0.003 6.5E-08 62.6 8.8 101 184-306 99-204 (244)
190 PRK06835 DNA replication prote 97.0 0.0012 2.5E-08 68.7 6.1 36 185-222 184-219 (329)
191 PRK15386 type III secretion pr 97.0 0.0015 3.3E-08 68.8 6.8 109 511-641 54-184 (426)
192 PRK05707 DNA polymerase III su 97.0 0.013 2.9E-07 61.0 13.8 69 269-337 106-177 (328)
193 KOG0730 AAA+-type ATPase [Post 97.0 0.024 5.1E-07 62.2 15.8 180 156-366 429-646 (693)
194 COG0470 HolB ATPase involved i 97.0 0.0096 2.1E-07 62.6 12.9 142 162-325 2-168 (325)
195 KOG0741 AAA+-type ATPase [Post 97.0 0.014 3E-07 62.0 13.5 145 182-365 536-704 (744)
196 TIGR02640 gas_vesic_GvpN gas v 96.9 0.034 7.4E-07 56.3 16.2 54 171-233 12-65 (262)
197 PRK09183 transposase/IS protei 96.9 0.002 4.4E-08 64.9 7.3 23 185-207 103-125 (259)
198 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0028 6E-08 63.4 7.8 94 185-280 70-174 (274)
199 PF01695 IstB_IS21: IstB-like 96.9 0.0007 1.5E-08 64.0 3.4 36 184-221 47-82 (178)
200 PRK07399 DNA polymerase III su 96.9 0.01 2.2E-07 61.5 12.1 172 161-338 4-195 (314)
201 TIGR01243 CDC48 AAA family ATP 96.9 0.014 3.1E-07 68.3 14.6 153 161-339 453-636 (733)
202 PF07728 AAA_5: AAA domain (dy 96.9 0.00061 1.3E-08 61.8 2.5 43 187-234 2-44 (139)
203 PF13207 AAA_17: AAA domain; P 96.9 0.00075 1.6E-08 59.5 3.0 22 186-207 1-22 (121)
204 PRK07261 topology modulation p 96.9 0.0019 4.1E-08 60.7 5.9 66 186-280 2-68 (171)
205 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00082 1.8E-08 69.6 3.6 47 162-208 52-102 (361)
206 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 69.5 13.1 153 160-338 177-359 (733)
207 PF13671 AAA_33: AAA domain; P 96.8 0.0016 3.4E-08 59.3 5.1 21 186-206 1-21 (143)
208 KOG0734 AAA+-type ATPase conta 96.8 0.0064 1.4E-07 64.5 9.9 48 160-207 303-360 (752)
209 TIGR00602 rad24 checkpoint pro 96.8 0.0053 1.1E-07 69.1 10.0 49 159-207 82-133 (637)
210 cd03214 ABC_Iron-Siderophores_ 96.8 0.0069 1.5E-07 57.6 9.5 123 185-312 26-163 (180)
211 COG1484 DnaC DNA replication p 96.8 0.0029 6.2E-08 63.5 6.9 50 183-240 104-153 (254)
212 COG0466 Lon ATP-dependent Lon 96.8 0.016 3.5E-07 64.1 12.9 162 160-339 322-509 (782)
213 CHL00195 ycf46 Ycf46; Provisio 96.8 0.0083 1.8E-07 65.8 10.9 154 161-340 228-407 (489)
214 PRK08939 primosomal protein Dn 96.8 0.0034 7.4E-08 64.7 7.5 117 165-305 135-259 (306)
215 cd01120 RecA-like_NTPases RecA 96.8 0.0052 1.1E-07 57.1 8.1 40 186-227 1-40 (165)
216 PF14516 AAA_35: AAA-like doma 96.8 0.038 8.3E-07 58.0 15.4 176 158-338 8-214 (331)
217 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0053 1.2E-07 61.2 8.3 56 183-239 18-77 (235)
218 PRK05541 adenylylsulfate kinas 96.7 0.0032 7E-08 59.6 6.1 36 183-220 6-41 (176)
219 PRK09361 radB DNA repair and r 96.7 0.0058 1.3E-07 60.5 8.2 46 183-231 22-67 (225)
220 PRK04296 thymidine kinase; Pro 96.7 0.0031 6.8E-08 60.4 6.0 113 185-308 3-117 (190)
221 KOG2228 Origin recognition com 96.7 0.015 3.3E-07 58.5 10.7 175 161-339 24-220 (408)
222 KOG0733 Nuclear AAA ATPase (VC 96.7 0.029 6.3E-07 60.8 13.5 95 160-280 189-293 (802)
223 PRK06696 uridine kinase; Valid 96.7 0.0018 3.9E-08 63.9 4.4 42 166-207 3-45 (223)
224 PRK07667 uridine kinase; Provi 96.6 0.0025 5.4E-08 61.3 5.0 39 169-207 2-40 (193)
225 PRK10865 protein disaggregatio 96.6 0.0098 2.1E-07 70.3 11.0 46 161-206 568-620 (857)
226 CHL00095 clpC Clp protease ATP 96.6 0.0052 1.1E-07 72.6 8.5 46 161-206 509-561 (821)
227 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0047 1E-07 72.7 8.1 47 161-207 566-619 (852)
228 COG4608 AppF ABC-type oligopep 96.6 0.0094 2E-07 58.7 8.8 130 184-316 39-179 (268)
229 COG2884 FtsE Predicted ATPase 96.6 0.017 3.6E-07 53.5 9.7 55 261-315 147-205 (223)
230 PF00448 SRP54: SRP54-type pro 96.6 0.0039 8.6E-08 59.8 6.0 56 184-241 1-57 (196)
231 cd01393 recA_like RecA is a b 96.6 0.015 3.2E-07 57.6 10.3 94 183-279 18-124 (226)
232 KOG1514 Origin recognition com 96.6 0.017 3.7E-07 63.6 11.3 166 161-338 396-589 (767)
233 TIGR02858 spore_III_AA stage I 96.6 0.026 5.6E-07 57.0 11.9 132 169-312 97-234 (270)
234 TIGR03346 chaperone_ClpB ATP-d 96.6 0.014 3.1E-07 69.3 11.6 47 161-207 565-618 (852)
235 cd01131 PilT Pilus retraction 96.6 0.0055 1.2E-07 59.2 6.8 111 185-311 2-113 (198)
236 COG0542 clpA ATP-binding subun 96.5 0.093 2E-06 59.9 17.1 117 161-294 491-620 (786)
237 TIGR02237 recomb_radB DNA repa 96.5 0.0075 1.6E-07 58.9 7.7 48 183-233 11-58 (209)
238 KOG2739 Leucine-rich acidic nu 96.5 0.001 2.2E-08 64.5 1.5 62 557-625 41-105 (260)
239 PF07693 KAP_NTPase: KAP famil 96.5 0.073 1.6E-06 55.9 15.8 73 168-240 3-81 (325)
240 COG1223 Predicted ATPase (AAA+ 96.5 0.037 8.1E-07 53.6 11.6 151 159-339 119-298 (368)
241 cd03247 ABCC_cytochrome_bd The 96.5 0.016 3.5E-07 54.9 9.3 122 185-312 29-162 (178)
242 cd01394 radB RadB. The archaea 96.5 0.01 2.2E-07 58.4 8.2 43 183-227 18-60 (218)
243 cd03238 ABC_UvrA The excision 96.4 0.014 3.1E-07 54.9 8.6 118 185-312 22-154 (176)
244 TIGR02902 spore_lonB ATP-depen 96.4 0.012 2.5E-07 65.9 9.4 44 161-206 65-108 (531)
245 PRK11889 flhF flagellar biosyn 96.4 0.035 7.6E-07 58.2 11.9 25 183-207 240-264 (436)
246 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.018 3.9E-07 52.8 8.7 122 185-309 3-140 (159)
247 PRK11034 clpA ATP-dependent Cl 96.4 0.0062 1.3E-07 70.4 7.0 47 161-207 458-511 (758)
248 KOG2123 Uncharacterized conser 96.4 0.00047 1E-08 67.0 -1.8 99 530-641 18-124 (388)
249 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.034 7.4E-07 50.6 10.5 102 185-312 27-132 (144)
250 PRK15455 PrkA family serine pr 96.4 0.0029 6.3E-08 69.0 3.8 45 162-206 77-125 (644)
251 PF00560 LRR_1: Leucine Rich R 96.4 0.0018 3.9E-08 37.7 1.2 19 613-631 2-20 (22)
252 KOG0733 Nuclear AAA ATPase (VC 96.3 0.047 1E-06 59.3 12.4 148 184-360 545-711 (802)
253 COG1136 SalX ABC-type antimicr 96.3 0.065 1.4E-06 52.0 12.4 54 261-314 152-210 (226)
254 COG0572 Udk Uridine kinase [Nu 96.3 0.0061 1.3E-07 58.4 5.3 79 183-270 7-85 (218)
255 cd03228 ABCC_MRP_Like The MRP 96.3 0.021 4.6E-07 53.7 9.0 121 185-312 29-160 (171)
256 PF14532 Sigma54_activ_2: Sigm 96.3 0.0038 8.2E-08 56.4 3.7 44 164-207 1-44 (138)
257 COG5238 RNA1 Ran GTPase-activa 96.3 0.0035 7.7E-08 60.9 3.5 153 552-709 85-284 (388)
258 PRK11608 pspF phage shock prot 96.3 0.016 3.5E-07 60.7 8.8 46 161-206 6-51 (326)
259 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.031 6.6E-07 55.1 9.9 125 185-312 31-204 (254)
260 cd03216 ABC_Carb_Monos_I This 96.2 0.024 5.3E-07 52.8 8.9 113 185-311 27-146 (163)
261 COG2255 RuvB Holliday junction 96.2 0.0035 7.5E-08 61.5 3.1 48 160-207 25-75 (332)
262 cd03223 ABCD_peroxisomal_ALDP 96.2 0.057 1.2E-06 50.5 11.2 112 185-311 28-152 (166)
263 cd03222 ABC_RNaseL_inhibitor T 96.2 0.042 9E-07 51.8 10.1 100 185-312 26-137 (177)
264 KOG0735 AAA+-type ATPase [Post 96.2 0.017 3.7E-07 63.6 8.3 98 161-280 408-505 (952)
265 PRK10733 hflB ATP-dependent me 96.2 0.039 8.6E-07 63.3 11.9 153 162-340 153-337 (644)
266 PRK13695 putative NTPase; Prov 96.2 0.0042 9.2E-08 58.7 3.4 22 186-207 2-23 (174)
267 PF00485 PRK: Phosphoribulokin 96.2 0.02 4.3E-07 55.1 8.2 82 186-272 1-86 (194)
268 cd03269 ABC_putative_ATPase Th 96.1 0.052 1.1E-06 53.0 11.2 23 185-207 27-49 (210)
269 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.5E-08 37.0 1.1 21 589-609 1-21 (22)
270 KOG0731 AAA+-type ATPase conta 96.1 0.12 2.6E-06 58.5 15.1 156 160-342 310-499 (774)
271 PRK13540 cytochrome c biogenes 96.1 0.038 8.3E-07 53.5 10.1 23 185-207 28-50 (200)
272 COG1618 Predicted nucleotide k 96.1 0.0046 1E-07 55.5 3.1 24 184-207 5-28 (179)
273 KOG0728 26S proteasome regulat 96.1 0.15 3.4E-06 49.1 13.4 147 162-338 147-331 (404)
274 TIGR02238 recomb_DMC1 meiotic 96.1 0.031 6.7E-07 57.8 9.7 58 183-241 95-156 (313)
275 cd03263 ABC_subfamily_A The AB 96.1 0.054 1.2E-06 53.3 11.2 23 185-207 29-51 (220)
276 TIGR02239 recomb_RAD51 DNA rep 96.1 0.029 6.2E-07 58.3 9.5 69 172-241 84-156 (316)
277 PLN03187 meiotic recombination 96.1 0.032 6.9E-07 58.2 9.8 58 183-241 125-186 (344)
278 TIGR03499 FlhF flagellar biosy 96.1 0.021 4.5E-07 58.4 8.3 25 183-207 193-217 (282)
279 cd03230 ABC_DR_subfamily_A Thi 96.1 0.023 5E-07 53.5 8.0 122 185-312 27-160 (173)
280 COG1875 NYN ribonuclease and A 96.1 0.011 2.5E-07 60.0 6.0 131 165-306 228-387 (436)
281 TIGR03740 galliderm_ABC gallid 96.1 0.066 1.4E-06 52.8 11.6 23 185-207 27-49 (223)
282 PRK04301 radA DNA repair and r 96.1 0.035 7.5E-07 58.0 10.0 58 182-240 100-161 (317)
283 cd00983 recA RecA is a bacter 96.0 0.012 2.5E-07 60.8 6.1 89 183-279 54-143 (325)
284 PRK06871 DNA polymerase III su 96.0 0.16 3.4E-06 52.8 14.4 153 170-338 11-179 (325)
285 PLN00020 ribulose bisphosphate 96.0 0.011 2.3E-07 61.1 5.6 25 183-207 147-171 (413)
286 cd03235 ABC_Metallic_Cations A 96.0 0.049 1.1E-06 53.3 10.3 23 185-207 26-48 (213)
287 PRK06067 flagellar accessory p 96.0 0.034 7.4E-07 55.3 9.2 93 182-279 23-130 (234)
288 cd03259 ABC_Carb_Solutes_like 96.0 0.059 1.3E-06 52.7 10.8 23 185-207 27-49 (213)
289 cd03246 ABCC_Protease_Secretio 96.0 0.035 7.7E-07 52.3 8.8 125 185-312 29-161 (173)
290 KOG1644 U2-associated snRNP A' 96.0 0.012 2.6E-07 54.9 5.3 100 530-641 41-147 (233)
291 PRK11248 tauB taurine transpor 95.9 0.064 1.4E-06 54.1 11.1 23 185-207 28-50 (255)
292 KOG2739 Leucine-rich acidic nu 95.9 0.0037 8E-08 60.8 1.9 83 555-641 61-150 (260)
293 TIGR02974 phageshock_pspF psp 95.9 0.025 5.4E-07 59.2 8.3 45 163-207 1-45 (329)
294 TIGR00959 ffh signal recogniti 95.9 0.061 1.3E-06 58.0 11.3 25 183-207 98-122 (428)
295 cd03266 ABC_NatA_sodium_export 95.9 0.092 2E-06 51.6 11.9 23 185-207 32-54 (218)
296 PRK13539 cytochrome c biogenes 95.9 0.068 1.5E-06 52.0 10.8 24 184-207 28-51 (207)
297 PF13238 AAA_18: AAA domain; P 95.9 0.0053 1.2E-07 54.5 2.8 21 187-207 1-21 (129)
298 PF13604 AAA_30: AAA domain; P 95.9 0.04 8.6E-07 53.1 9.0 114 171-304 7-128 (196)
299 PRK09270 nucleoside triphospha 95.9 0.0081 1.8E-07 59.5 4.3 27 181-207 30-56 (229)
300 cd03265 ABC_DrrA DrrA is the A 95.9 0.082 1.8E-06 52.0 11.4 23 185-207 27-49 (220)
301 PRK04040 adenylate kinase; Pro 95.9 0.027 5.8E-07 53.8 7.6 24 184-207 2-25 (188)
302 PRK04132 replication factor C 95.9 0.6 1.3E-05 54.6 19.7 146 192-367 574-723 (846)
303 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.066 1.4E-06 53.6 10.7 23 185-207 26-48 (246)
304 PF10443 RNA12: RNA12 protein; 95.9 0.076 1.6E-06 56.1 11.4 162 166-340 1-231 (431)
305 TIGR02012 tigrfam_recA protein 95.9 0.013 2.9E-07 60.3 5.8 90 182-279 53-143 (321)
306 PF08423 Rad51: Rad51; InterP 95.9 0.052 1.1E-06 54.6 9.9 95 184-279 38-143 (256)
307 KOG1969 DNA replication checkp 95.9 0.02 4.4E-07 63.3 7.3 73 183-281 325-399 (877)
308 cd03115 SRP The signal recogni 95.9 0.049 1.1E-06 51.3 9.2 22 186-207 2-23 (173)
309 TIGR01817 nifA Nif-specific re 95.9 0.037 8E-07 62.4 9.8 49 159-207 194-242 (534)
310 KOG2123 Uncharacterized conser 95.9 0.00061 1.3E-08 66.2 -3.8 78 556-641 16-95 (388)
311 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.036 7.8E-07 51.3 8.2 114 185-313 26-146 (157)
312 cd03268 ABC_BcrA_bacitracin_re 95.8 0.087 1.9E-06 51.3 11.2 24 184-207 26-49 (208)
313 PTZ00301 uridine kinase; Provi 95.8 0.0086 1.9E-07 58.1 4.0 23 184-206 3-25 (210)
314 cd03229 ABC_Class3 This class 95.8 0.02 4.4E-07 54.2 6.4 22 185-206 27-48 (178)
315 PRK09354 recA recombinase A; P 95.8 0.025 5.4E-07 58.8 7.5 90 182-279 58-148 (349)
316 cd03264 ABC_drug_resistance_li 95.8 0.076 1.6E-06 51.9 10.6 22 186-207 27-48 (211)
317 PLN03186 DNA repair protein RA 95.8 0.046 1E-06 57.1 9.4 68 173-241 112-183 (342)
318 PRK14974 cell division protein 95.8 0.051 1.1E-06 56.6 9.7 24 183-206 139-162 (336)
319 PRK10867 signal recognition pa 95.8 0.04 8.7E-07 59.4 9.2 24 183-206 99-122 (433)
320 PRK08769 DNA polymerase III su 95.8 0.18 4E-06 52.1 13.7 69 268-336 112-183 (319)
321 PRK05480 uridine/cytidine kina 95.8 0.0076 1.7E-07 58.8 3.4 25 183-207 5-29 (209)
322 PRK06002 fliI flagellum-specif 95.7 0.037 8E-07 59.4 8.6 92 184-280 165-265 (450)
323 PRK08233 hypothetical protein; 95.7 0.008 1.7E-07 57.2 3.3 24 184-207 3-26 (182)
324 KOG1532 GTPase XAB1, interacts 95.7 0.045 9.7E-07 53.5 8.1 109 182-298 17-137 (366)
325 cd03226 ABC_cobalt_CbiO_domain 95.7 0.12 2.6E-06 50.1 11.6 23 185-207 27-49 (205)
326 PRK06964 DNA polymerase III su 95.7 0.24 5.3E-06 51.7 14.3 70 268-337 131-203 (342)
327 cd03301 ABC_MalK_N The N-termi 95.7 0.081 1.8E-06 51.7 10.4 23 185-207 27-49 (213)
328 PRK08699 DNA polymerase III su 95.7 0.099 2.1E-06 54.5 11.4 69 269-337 113-184 (325)
329 KOG0991 Replication factor C, 95.7 0.019 4.2E-07 54.6 5.5 44 161-206 27-70 (333)
330 cd01135 V_A-ATPase_B V/A-type 95.7 0.049 1.1E-06 54.5 8.6 97 185-281 70-178 (276)
331 PRK06547 hypothetical protein; 95.7 0.014 3E-07 54.7 4.6 26 182-207 13-38 (172)
332 PRK00771 signal recognition pa 95.7 0.048 1E-06 58.9 9.3 56 183-241 94-151 (437)
333 PRK15429 formate hydrogenlyase 95.7 0.032 6.9E-07 64.9 8.6 47 161-207 376-422 (686)
334 PRK12723 flagellar biosynthesi 95.7 0.11 2.5E-06 55.2 11.9 101 183-292 173-281 (388)
335 TIGR03522 GldA_ABC_ATP gliding 95.7 0.1 2.2E-06 54.1 11.4 24 184-207 28-51 (301)
336 cd02019 NK Nucleoside/nucleoti 95.7 0.0077 1.7E-07 46.9 2.4 22 186-207 1-22 (69)
337 cd03215 ABC_Carb_Monos_II This 95.7 0.11 2.5E-06 49.3 10.9 23 185-207 27-49 (182)
338 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.6 0.084 1.8E-06 52.1 10.3 23 185-207 49-71 (224)
339 TIGR00235 udk uridine kinase. 95.6 0.009 1.9E-07 58.2 3.3 25 183-207 5-29 (207)
340 PRK06762 hypothetical protein; 95.6 0.0086 1.9E-07 56.1 3.1 24 184-207 2-25 (166)
341 COG0488 Uup ATPase components 95.6 0.1 2.2E-06 57.9 11.7 128 187-324 351-511 (530)
342 PRK13531 regulatory ATPase Rav 95.6 0.011 2.3E-07 63.9 3.9 43 161-207 20-62 (498)
343 KOG2004 Mitochondrial ATP-depe 95.6 0.0094 2E-07 65.6 3.5 53 160-214 410-466 (906)
344 TIGR02236 recomb_radA DNA repa 95.6 0.095 2.1E-06 54.6 11.0 58 182-240 93-154 (310)
345 cd03267 ABC_NatA_like Similar 95.6 0.13 2.9E-06 51.1 11.7 23 185-207 48-70 (236)
346 PRK09544 znuC high-affinity zi 95.6 0.088 1.9E-06 52.9 10.3 24 184-207 30-53 (251)
347 TIGR01277 thiQ thiamine ABC tr 95.6 0.096 2.1E-06 51.2 10.4 23 185-207 25-47 (213)
348 PRK13543 cytochrome c biogenes 95.6 0.14 2.9E-06 50.2 11.4 23 185-207 38-60 (214)
349 PRK11247 ssuB aliphatic sulfon 95.6 0.14 3.1E-06 51.5 11.9 23 185-207 39-61 (257)
350 COG1120 FepC ABC-type cobalami 95.5 0.067 1.5E-06 53.0 8.8 23 184-206 28-50 (258)
351 PTZ00185 ATPase alpha subunit; 95.5 0.076 1.6E-06 57.4 9.8 94 185-280 190-300 (574)
352 COG2607 Predicted ATPase (AAA+ 95.5 0.1 2.2E-06 50.3 9.6 100 161-292 60-165 (287)
353 PRK14722 flhF flagellar biosyn 95.5 0.097 2.1E-06 55.2 10.5 89 184-280 137-226 (374)
354 PTZ00035 Rad51 protein; Provis 95.5 0.11 2.4E-06 54.4 11.0 66 175-241 109-178 (337)
355 PRK13541 cytochrome c biogenes 95.5 0.12 2.6E-06 49.8 10.4 23 185-207 27-49 (195)
356 PRK05703 flhF flagellar biosyn 95.5 0.11 2.3E-06 56.4 11.0 39 184-222 221-259 (424)
357 TIGR00390 hslU ATP-dependent p 95.5 0.025 5.5E-07 59.7 6.0 76 161-238 12-103 (441)
358 TIGR01188 drrA daunorubicin re 95.4 0.16 3.5E-06 52.6 12.1 23 185-207 20-42 (302)
359 PRK05973 replicative DNA helic 95.4 0.15 3.3E-06 50.2 11.1 153 184-343 64-229 (237)
360 PRK06090 DNA polymerase III su 95.4 0.37 8.1E-06 49.8 14.4 152 170-336 12-178 (319)
361 KOG0924 mRNA splicing factor A 95.4 0.086 1.9E-06 57.8 9.8 134 170-311 361-514 (1042)
362 PF12061 DUF3542: Protein of u 95.4 0.027 5.9E-07 55.8 5.6 77 4-80 296-373 (402)
363 PRK12724 flagellar biosynthesi 95.4 0.077 1.7E-06 56.4 9.3 24 184-207 223-246 (432)
364 PF00006 ATP-synt_ab: ATP synt 95.4 0.062 1.4E-06 52.2 8.1 90 185-280 16-116 (215)
365 cd02025 PanK Pantothenate kina 95.4 0.055 1.2E-06 53.1 7.9 22 186-207 1-22 (220)
366 PRK13538 cytochrome c biogenes 95.4 0.097 2.1E-06 50.8 9.6 23 185-207 28-50 (204)
367 TIGR00064 ftsY signal recognit 95.4 0.076 1.7E-06 53.9 9.0 55 183-240 71-127 (272)
368 cd03231 ABC_CcmA_heme_exporter 95.4 0.12 2.6E-06 50.0 10.1 23 185-207 27-49 (201)
369 cd03298 ABC_ThiQ_thiamine_tran 95.4 0.13 2.8E-06 50.2 10.4 23 185-207 25-47 (211)
370 COG1126 GlnQ ABC-type polar am 95.4 0.19 4.1E-06 47.8 10.7 54 261-314 146-203 (240)
371 COG0464 SpoVK ATPases of the A 95.3 0.063 1.4E-06 60.0 9.2 153 162-340 243-425 (494)
372 PF00158 Sigma54_activat: Sigm 95.3 0.036 7.7E-07 51.8 6.0 45 163-207 1-45 (168)
373 PRK05439 pantothenate kinase; 95.3 0.085 1.8E-06 54.2 9.1 26 181-206 83-108 (311)
374 cd01122 GP4d_helicase GP4d_hel 95.3 0.13 2.9E-06 52.4 10.7 53 185-240 31-83 (271)
375 KOG0729 26S proteasome regulat 95.3 0.12 2.5E-06 50.3 9.3 46 161-206 177-233 (435)
376 PRK05022 anaerobic nitric oxid 95.3 0.077 1.7E-06 59.3 9.5 48 160-207 186-233 (509)
377 PRK03839 putative kinase; Prov 95.3 0.013 2.8E-07 55.7 2.8 22 186-207 2-23 (180)
378 cd03236 ABC_RNaseL_inhibitor_d 95.2 0.14 3E-06 51.6 10.4 23 185-207 27-49 (255)
379 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.082 1.8E-06 51.1 8.5 23 185-207 27-49 (200)
380 PRK13650 cbiO cobalt transport 95.2 0.087 1.9E-06 53.9 9.1 23 185-207 34-56 (279)
381 PRK08533 flagellar accessory p 95.2 0.14 2.9E-06 50.7 10.1 52 184-240 24-75 (230)
382 PRK13647 cbiO cobalt transport 95.2 0.12 2.5E-06 52.8 10.0 23 185-207 32-54 (274)
383 COG2812 DnaX DNA polymerase II 95.2 0.13 2.8E-06 56.3 10.6 171 161-340 16-193 (515)
384 PF07726 AAA_3: ATPase family 95.2 0.011 2.3E-07 51.5 1.9 27 187-215 2-28 (131)
385 cd03283 ABC_MutS-like MutS-lik 95.2 0.11 2.5E-06 50.0 9.3 22 185-206 26-47 (199)
386 PRK12727 flagellar biosynthesi 95.2 0.12 2.6E-06 56.5 10.2 24 184-207 350-373 (559)
387 PRK12678 transcription termina 95.2 0.042 9.2E-07 60.0 6.7 103 172-280 405-514 (672)
388 PRK12597 F0F1 ATP synthase sub 95.2 0.058 1.2E-06 58.4 7.8 95 185-280 144-248 (461)
389 TIGR03771 anch_rpt_ABC anchore 95.2 0.14 3.1E-06 50.4 10.2 23 185-207 7-29 (223)
390 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.3E-06 48.3 8.5 122 185-309 6-142 (173)
391 TIGR03411 urea_trans_UrtD urea 95.2 0.2 4.2E-06 50.1 11.2 23 185-207 29-51 (242)
392 TIGR00968 3a0106s01 sulfate AB 95.1 0.13 2.7E-06 51.3 9.8 23 185-207 27-49 (237)
393 PRK11153 metN DL-methionine tr 95.1 0.19 4.1E-06 53.1 11.5 23 185-207 32-54 (343)
394 TIGR00150 HI0065_YjeE ATPase, 95.1 0.024 5.1E-07 50.3 3.9 38 170-207 8-45 (133)
395 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.02 4.3E-07 55.9 3.8 23 184-206 29-51 (213)
396 PRK08927 fliI flagellum-specif 95.1 0.083 1.8E-06 56.7 8.6 91 184-280 158-259 (442)
397 cd03300 ABC_PotA_N PotA is an 95.1 0.15 3.2E-06 50.6 10.1 23 185-207 27-49 (232)
398 PF13481 AAA_25: AAA domain; P 95.1 0.099 2.2E-06 50.2 8.6 41 185-225 33-81 (193)
399 TIGR02868 CydC thiol reductant 95.1 0.12 2.5E-06 58.4 10.4 23 184-206 361-383 (529)
400 PRK00625 shikimate kinase; Pro 95.1 0.015 3.3E-07 54.6 2.6 22 186-207 2-23 (173)
401 TIGR01360 aden_kin_iso1 adenyl 95.1 0.017 3.7E-07 55.2 3.1 23 184-206 3-25 (188)
402 PRK08972 fliI flagellum-specif 95.0 0.076 1.6E-06 56.8 8.1 90 185-280 163-263 (444)
403 cd03244 ABCC_MRP_domain2 Domai 95.0 0.16 3.4E-06 50.1 10.0 23 185-207 31-53 (221)
404 PRK07993 DNA polymerase III su 95.0 0.43 9.4E-06 49.9 13.7 154 169-337 10-179 (334)
405 PRK13537 nodulation ABC transp 95.0 0.26 5.6E-06 51.2 12.0 23 185-207 34-56 (306)
406 cd03278 ABC_SMC_barmotin Barmo 95.0 0.29 6.2E-06 47.2 11.5 20 186-205 24-43 (197)
407 PRK13975 thymidylate kinase; P 95.0 0.079 1.7E-06 51.0 7.7 23 185-207 3-25 (196)
408 COG0542 clpA ATP-binding subun 95.0 0.061 1.3E-06 61.3 7.6 153 161-337 170-345 (786)
409 cd01121 Sms Sms (bacterial rad 95.0 0.075 1.6E-06 56.3 8.0 52 171-224 69-120 (372)
410 PRK05342 clpX ATP-dependent pr 95.0 0.048 1E-06 58.6 6.6 46 161-206 71-130 (412)
411 PRK13545 tagH teichoic acids e 95.0 0.18 3.9E-06 55.4 10.9 23 185-207 51-73 (549)
412 cd01136 ATPase_flagellum-secre 95.0 0.12 2.7E-06 53.4 9.2 90 185-280 70-170 (326)
413 cd02023 UMPK Uridine monophosp 95.0 0.015 3.2E-07 56.3 2.4 21 186-206 1-21 (198)
414 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.031 6.7E-07 54.1 4.6 122 184-315 29-159 (204)
415 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.15 3.1E-06 50.9 9.5 49 182-234 19-67 (237)
416 PRK05201 hslU ATP-dependent pr 94.9 0.04 8.6E-07 58.4 5.6 77 161-239 15-107 (443)
417 PRK08149 ATP synthase SpaL; Va 94.9 0.12 2.5E-06 55.5 9.2 91 184-280 151-252 (428)
418 KOG2035 Replication factor C, 94.9 0.37 8E-06 47.5 11.5 212 163-402 15-282 (351)
419 PF12775 AAA_7: P-loop contain 94.9 0.02 4.3E-07 58.1 3.2 34 171-207 23-56 (272)
420 cd02024 NRK1 Nicotinamide ribo 94.9 0.016 3.4E-07 55.0 2.3 22 186-207 1-22 (187)
421 PRK07721 fliI flagellum-specif 94.9 0.15 3.4E-06 55.1 10.0 24 184-207 158-181 (438)
422 cd03254 ABCC_Glucan_exporter_l 94.9 0.22 4.8E-06 49.3 10.6 23 185-207 30-52 (229)
423 COG0396 sufC Cysteine desulfur 94.9 0.32 6.9E-06 46.8 10.8 56 261-316 154-213 (251)
424 PRK14738 gmk guanylate kinase; 94.8 0.023 4.9E-07 55.3 3.4 31 177-207 6-36 (206)
425 PF03308 ArgK: ArgK protein; 94.8 0.038 8.3E-07 54.2 4.8 41 169-209 14-54 (266)
426 PF01583 APS_kinase: Adenylyls 94.8 0.027 5.9E-07 51.4 3.6 35 184-220 2-36 (156)
427 PRK10463 hydrogenase nickel in 94.8 0.076 1.6E-06 53.7 7.1 91 183-280 103-195 (290)
428 PRK00131 aroK shikimate kinase 94.8 0.021 4.5E-07 53.8 2.9 24 184-207 4-27 (175)
429 COG3267 ExeA Type II secretory 94.8 1.6 3.4E-05 42.9 15.5 164 170-341 36-216 (269)
430 COG5238 RNA1 Ran GTPase-activa 94.8 0.051 1.1E-06 53.1 5.4 178 530-710 91-316 (388)
431 cd03213 ABCG_EPDR ABCG transpo 94.8 0.19 4.2E-06 48.3 9.6 24 184-207 35-58 (194)
432 cd01125 repA Hexameric Replica 94.8 0.17 3.7E-06 50.5 9.6 22 186-207 3-24 (239)
433 COG1428 Deoxynucleoside kinase 94.8 0.02 4.4E-07 54.1 2.6 24 184-207 4-27 (216)
434 KOG0473 Leucine-rich repeat pr 94.8 0.0019 4.1E-08 61.3 -4.2 81 555-641 38-118 (326)
435 PRK11000 maltose/maltodextrin 94.8 0.24 5.2E-06 52.8 11.2 23 185-207 30-52 (369)
436 TIGR03375 type_I_sec_LssB type 94.8 0.21 4.6E-06 58.4 11.8 22 185-206 492-513 (694)
437 TIGR02322 phosphon_PhnN phosph 94.8 0.021 4.6E-07 54.1 2.9 23 185-207 2-24 (179)
438 PRK10820 DNA-binding transcrip 94.8 0.1 2.2E-06 58.4 8.7 47 161-207 204-250 (520)
439 TIGR01425 SRP54_euk signal rec 94.8 0.076 1.7E-06 56.9 7.2 24 183-206 99-122 (429)
440 PLN02318 phosphoribulokinase/u 94.8 0.035 7.6E-07 61.1 4.7 34 174-207 55-88 (656)
441 PRK09280 F0F1 ATP synthase sub 94.7 0.09 2E-06 56.7 7.8 95 185-280 145-249 (463)
442 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.018 3.9E-07 54.8 2.3 22 186-207 1-22 (183)
443 PRK01184 hypothetical protein; 94.7 0.38 8.2E-06 45.7 11.5 21 185-206 2-22 (184)
444 PRK13657 cyclic beta-1,2-gluca 94.7 0.23 5E-06 56.9 11.7 23 184-206 361-383 (588)
445 KOG0726 26S proteasome regulat 94.7 0.37 8E-06 47.7 11.1 47 161-207 185-242 (440)
446 TIGR03305 alt_F1F0_F1_bet alte 94.7 0.073 1.6E-06 57.3 7.0 95 185-280 139-243 (449)
447 KOG3347 Predicted nucleotide k 94.7 0.036 7.8E-07 49.1 3.8 22 185-206 8-29 (176)
448 KOG2170 ATPase of the AAA+ sup 94.7 0.12 2.7E-06 51.4 7.9 113 162-292 83-203 (344)
449 cd01129 PulE-GspE PulE/GspE Th 94.7 0.13 2.8E-06 52.0 8.5 122 164-306 62-183 (264)
450 PRK15064 ABC transporter ATP-b 94.7 0.34 7.4E-06 54.7 12.8 23 185-207 28-50 (530)
451 PRK12726 flagellar biosynthesi 94.7 0.32 6.9E-06 51.0 11.3 90 183-280 205-296 (407)
452 TIGR00554 panK_bact pantothena 94.7 0.041 9E-07 56.0 4.8 25 182-206 60-84 (290)
453 PF00910 RNA_helicase: RNA hel 94.6 0.018 3.8E-07 49.4 1.8 21 187-207 1-21 (107)
454 TIGR02314 ABC_MetN D-methionin 94.6 0.2 4.3E-06 52.7 9.9 23 185-207 32-54 (343)
455 cd02028 UMPK_like Uridine mono 94.6 0.021 4.6E-07 54.1 2.4 22 186-207 1-22 (179)
456 PRK13947 shikimate kinase; Pro 94.6 0.022 4.8E-07 53.5 2.6 21 186-206 3-23 (171)
457 COG4618 ArpD ABC-type protease 94.6 0.13 2.8E-06 55.0 8.3 22 185-206 363-384 (580)
458 PRK15439 autoinducer 2 ABC tra 94.6 0.33 7.2E-06 54.4 12.3 23 185-207 38-60 (510)
459 PF08433 KTI12: Chromatin asso 94.6 0.056 1.2E-06 54.6 5.5 23 185-207 2-24 (270)
460 cd03243 ABC_MutS_homologs The 94.6 0.017 3.7E-07 56.0 1.7 22 185-206 30-51 (202)
461 PRK04328 hypothetical protein; 94.6 0.12 2.7E-06 51.8 8.0 41 183-225 22-62 (249)
462 PRK00889 adenylylsulfate kinas 94.6 0.03 6.5E-07 52.9 3.3 24 184-207 4-27 (175)
463 COG0465 HflB ATP-dependent Zn 94.6 0.36 7.8E-06 53.7 12.0 52 158-209 147-208 (596)
464 TIGR01420 pilT_fam pilus retra 94.5 0.073 1.6E-06 56.2 6.5 112 184-310 122-233 (343)
465 PRK06217 hypothetical protein; 94.5 0.024 5.2E-07 54.0 2.6 22 186-207 3-24 (183)
466 PF00625 Guanylate_kin: Guanyl 94.5 0.035 7.7E-07 52.8 3.8 36 184-221 2-37 (183)
467 TIGR03263 guanyl_kin guanylate 94.5 0.027 5.8E-07 53.5 2.9 23 185-207 2-24 (180)
468 TIGR03575 selen_PSTK_euk L-ser 94.5 0.17 3.6E-06 52.8 8.9 21 187-207 2-22 (340)
469 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.25 5.4E-06 48.9 10.0 41 183-225 19-59 (229)
470 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.17 3.7E-06 51.0 8.9 40 183-224 35-74 (259)
471 cd02021 GntK Gluconate kinase 94.5 0.024 5.1E-07 52.0 2.4 22 186-207 1-22 (150)
472 PRK13409 putative ATPase RIL; 94.5 0.21 4.7E-06 56.7 10.5 23 185-207 366-388 (590)
473 PF13504 LRR_7: Leucine rich r 94.5 0.025 5.4E-07 30.4 1.5 16 612-627 2-17 (17)
474 TIGR02142 modC_ABC molybdenum 94.5 0.32 6.9E-06 51.6 11.3 23 185-207 24-46 (354)
475 PRK05922 type III secretion sy 94.5 0.17 3.7E-06 54.3 9.1 92 185-280 158-258 (434)
476 PRK11144 modC molybdate transp 94.5 0.3 6.6E-06 51.7 11.1 23 185-207 25-47 (352)
477 PRK07594 type III secretion sy 94.5 0.14 3.1E-06 54.9 8.4 91 184-280 155-256 (433)
478 PF06745 KaiC: KaiC; InterPro 94.4 0.072 1.6E-06 52.7 5.9 93 183-279 18-125 (226)
479 cd00227 CPT Chloramphenicol (C 94.4 0.027 5.9E-07 53.2 2.7 23 185-207 3-25 (175)
480 TIGR01040 V-ATPase_V1_B V-type 94.4 0.12 2.5E-06 55.6 7.6 96 185-280 142-258 (466)
481 PRK03846 adenylylsulfate kinas 94.4 0.034 7.3E-07 53.7 3.3 25 182-206 22-46 (198)
482 PF03205 MobB: Molybdopterin g 94.4 0.033 7.2E-07 50.3 3.0 39 185-224 1-39 (140)
483 PHA02774 E1; Provisional 94.4 0.12 2.6E-06 56.8 7.8 40 179-222 429-468 (613)
484 PRK10751 molybdopterin-guanine 94.4 0.036 7.8E-07 51.7 3.3 25 183-207 5-29 (173)
485 TIGR03498 FliI_clade3 flagella 94.4 0.11 2.4E-06 55.6 7.5 23 185-207 141-163 (418)
486 COG1936 Predicted nucleotide k 94.4 0.03 6.4E-07 51.2 2.7 20 186-205 2-21 (180)
487 COG1124 DppF ABC-type dipeptid 94.4 0.031 6.7E-07 54.0 2.9 22 185-206 34-55 (252)
488 COG1703 ArgK Putative periplas 94.4 0.039 8.5E-07 54.9 3.7 65 170-234 37-101 (323)
489 cd02020 CMPK Cytidine monophos 94.4 0.026 5.6E-07 51.5 2.3 22 186-207 1-22 (147)
490 COG1102 Cmk Cytidylate kinase 94.4 0.026 5.5E-07 50.8 2.2 44 186-242 2-45 (179)
491 PF00154 RecA: recA bacterial 94.3 0.14 3E-06 52.8 7.7 91 183-281 52-143 (322)
492 PRK13546 teichoic acids export 94.3 0.22 4.9E-06 50.4 9.3 23 185-207 51-73 (264)
493 PRK05986 cob(I)alamin adenolsy 94.3 0.26 5.6E-06 46.6 8.9 124 184-309 22-160 (191)
494 PRK11388 DNA-binding transcrip 94.3 0.13 2.9E-06 59.4 8.5 47 161-207 325-371 (638)
495 PRK14723 flhF flagellar biosyn 94.3 0.2 4.3E-06 57.5 9.5 24 184-207 185-208 (767)
496 PRK13949 shikimate kinase; Pro 94.3 0.03 6.5E-07 52.4 2.6 22 186-207 3-24 (169)
497 COG0194 Gmk Guanylate kinase [ 94.3 0.05 1.1E-06 50.5 3.9 24 184-207 4-27 (191)
498 cd01132 F1_ATPase_alpha F1 ATP 94.3 0.18 3.8E-06 50.6 8.1 98 185-288 70-181 (274)
499 COG0468 RecA RecA/RadA recombi 94.3 0.24 5.2E-06 49.9 9.1 91 182-280 58-152 (279)
500 TIGR00041 DTMP_kinase thymidyl 94.3 0.15 3.3E-06 49.0 7.6 23 185-207 4-26 (195)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-83 Score=729.40 Aligned_cols=683 Identities=31% Similarity=0.478 Sum_probs=543.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHHHHHHHHHhhhhhhhHhhhhhcc
Q 047642 3 EAAVLYAVQRLSDLLTQEAVFLQGVRGEVLWLQRELTRMQGFLKDTDQQQDTDDGVRRWVSEVRNAAYDAEDIVDTFMVQ 82 (718)
Q Consensus 3 ~~~v~~~~~kl~~~l~~e~~~~~~~~~~i~~l~~~L~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~~ 82 (718)
++.++..++|+..++.+++....++++.+..|++.|..++++++||++++.....+..|.+.+++++|++||+++.|...
T Consensus 2 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~ 81 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVE 81 (889)
T ss_pred CeEEEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778899999999999999999999999999999999999999999988999999999999999999999999887
Q ss_pred cccC--CCccc---cchhhhccccccccccchhHHHHHHHHHHHHHHHHhhhhCccccccCCCCCcchhhhhcccccCCC
Q 047642 83 PADG--GGFWA---SLKKYACILNRGVNHYGVGKDIEELKGRIIDISRGAEAYGIRTISCTERNRSLTERFRHIRRTSSN 157 (718)
Q Consensus 83 ~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~i~~rl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (718)
.... .+..+ ...+..++. ..++..+..+..+.+|+-.+.+..+.|+........ ... ......+.+.|.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~c~~---~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~-~~~--~~~~~~~e~~~~ 155 (889)
T KOG4658|consen 82 EIERKANDLLSTRSVERQRLCLC---GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVV-GES--LDPREKVETRPI 155 (889)
T ss_pred HHHHHHhHHhhhhHHHHHHHhhh---hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecc-ccc--ccchhhcccCCC
Confidence 6532 11111 111112211 566788888888999999999999988866522211 110 011222344455
Q ss_pred CCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc-ccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD-VKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
.+... ||.+..++++.+.|..++. .+++|+||||+||||||+.++|+.. ++++|+.++||+||+.|+...++.+|+
T Consensus 156 ~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il 232 (889)
T KOG4658|consen 156 QSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTIL 232 (889)
T ss_pred Ccccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHH
Confidence 55555 9999999999999998864 8999999999999999999999987 999999999999999999999999999
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDEK 316 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~ 316 (718)
..++..... ....+.++++..+.+.|.+|||+|||||||+..+|+.+..++|...+||||++|||++.|+....+.
T Consensus 233 ~~l~~~~~~----~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 233 ERLGLLDEE----WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHhccCCcc----cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 999874432 2233347889999999999999999999999999999999999988999999999999999994444
Q ss_pred CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc---------------cCChhHHHHHHHHhh
Q 047642 317 NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR---------------EEIPHEWHTVKNHLW 381 (718)
Q Consensus 317 ~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~---------------~~~~~~w~~~~~~~~ 381 (718)
...++++.|+.+|||+||++++|..... ..+.++++|++|+++|+ +.+..+|+.+.+.+.
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~~-----~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTLG-----SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred CccccccccCccccHHHHHHhhcccccc-----ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 5899999999999999999999987543 34559999999999998 556779999999987
Q ss_pred ccccC----CCCchHhHHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCc-C-CCCCCHHHHHHHHHHHH
Q 047642 382 WHLTQ----DSDHVSPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFI-P-EEEQDMENVAEEYLKEL 455 (718)
Q Consensus 382 ~~~~~----~~~~i~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i-~-~~~~~~e~~~~~~l~~L 455 (718)
+.... ..+.+.++|++|||.||+++|.||+|||+||+|+.|+++.|+..|+||||+ + ..+.+++++|..|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 76332 356899999999999999999999999999999999999999999999999 4 55788999999999999
Q ss_pred hhccccchhhccCCcEeEEEeCHHHHHHHHHhhh-----hcCcEeeec-Ccc-ccccCCCCceeEEEeecCCcccccccc
Q 047642 456 IDRSMIQIAERYLDKVKTCRIHDLIRELAIKKAR-----ALEFLDVYD-GKV-NLSYSSTSLTRRQVIPSGNMKYVSLVH 528 (718)
Q Consensus 456 ~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~-----~e~~~~~~~-~~~-~~~~~~~~~~r~l~l~~~~~~~~~~~~ 528 (718)
++++|++..... ++...|+|||+|||+|.++++ +++++...+ +.. ..........|++++..+.........
T Consensus 464 V~~~Ll~~~~~~-~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~ 542 (889)
T KOG4658|consen 464 VRASLLIEERDE-GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS 542 (889)
T ss_pred HHHHHHhhcccc-cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC
Confidence 999999987643 456899999999999999999 666443222 101 111224456899999966655533333
Q ss_pred ccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccccc
Q 047642 529 FYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIG 608 (718)
Q Consensus 529 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~ 608 (718)
..++|++|.+.++.. . .......+|..++.|++|||++|. ++.++|++|+.|.+||||+++++.++.||.++.
T Consensus 543 ~~~~L~tLll~~n~~-~-l~~is~~ff~~m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-W-LLEISGEFFRSLPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLG 615 (889)
T ss_pred CCCccceEEEeecch-h-hhhcCHHHHhhCcceEEEECCCCC-----ccCcCChHHhhhhhhhcccccCCCccccchHHH
Confidence 378999999998863 0 133445678999999999999876 223399999999999999999999999999999
Q ss_pred ccCCCcEEEecCcc-ccccChhhccccccceeee-cccCcc---cCCCccccccccceecc---ccchHHhcccCCCC--
Q 047642 609 NLQCLKTMVASGNS-CWKLPSQISKLHQLRHLIA-RPLGHL---QVSTLTNLQTLKYVNFQ---QWDAVDARNLINLQ-- 678 (718)
Q Consensus 609 ~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l-~~~~p~---~~~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~-- 678 (718)
+|..|.+||+..+. +..+|..+..|++|++|.+ ...... .++.+.+|++|....+. ......+..++.|.
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSL 695 (889)
T ss_pred HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHH
Confidence 99999999999884 4455555667999999998 222222 23444555555554444 22234455555555
Q ss_pred --eEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 679 --ELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 679 --~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.+.+.++ ....+.++..+.+|++|.+.+|+..+
T Consensus 696 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 696 LQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 3333333 56677788999999999999998754
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-52 Score=500.98 Aligned_cols=453 Identities=22% Similarity=0.307 Sum_probs=315.1
Q ss_pred CCCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe---cCC--------
Q 047642 157 NAGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV---TQE-------- 225 (718)
Q Consensus 157 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-------- 225 (718)
..+...+|||++.++++..+|....+++++|+||||||+||||||+++|+ ++..+|+..+|+.. ...
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccc
Confidence 34556799999999999999876666799999999999999999999999 57889999888742 111
Q ss_pred ---CC-HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEE
Q 047642 226 ---YT-TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIV 301 (718)
Q Consensus 226 ---~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsrii 301 (718)
++ ...+...++.++...... .... ...+++.|++||+||||||||+.++|+.+.....++++||+||
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~-----~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDI-----KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCc-----ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 01 122344444444332211 0001 1356788999999999999999999999998888889999999
Q ss_pred EEecchhhhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc--------------c
Q 047642 302 ITTRNEPVAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR--------------E 367 (718)
Q Consensus 302 vTTR~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~--------------~ 367 (718)
||||+++++..++.. ++|+++.|+.++||+||+++||+... .+.++++++++|+++|+ +
T Consensus 329 iTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF~~~Af~~~~------~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~ 401 (1153)
T PLN03210 329 VITKDKHFLRAHGID-HIYEVCLPSNELALEMFCRSAFKKNS------PPDGFMELASEVALRAGNLPLGLNVLGSYLRG 401 (1153)
T ss_pred EEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHHHHHhcCCCC------CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC
Confidence 999999998876544 78999999999999999999998643 45678999999999998 3
Q ss_pred CChhHHHHHHHHhhccccCCCCchHhHHHhcccCCCh-hhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHH
Q 047642 368 EIPHEWHTVKNHLWWHLTQDSDHVSPILALSYDELPY-QLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMEN 446 (718)
Q Consensus 368 ~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~ 446 (718)
....+|+.+++++.+.. ...|..+|++||++|++ ..|.||++||+||.+..++ .+..|++.+...
T Consensus 402 k~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-------- 467 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-------- 467 (1153)
T ss_pred CCHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC--------
Confidence 45789999999987643 34799999999999987 5999999999999987554 467788876541
Q ss_pred HHHHHHHHHhhccccchhhccCCcEeEEEeCHHHHHHHHHhhhhcCc-------EeeecCcc--ccccCCCCceeEEEee
Q 047642 447 VAEEYLKELIDRSMIQIAERYLDKVKTCRIHDLIRELAIKKARALEF-------LDVYDGKV--NLSYSSTSLTRRQVIP 517 (718)
Q Consensus 447 ~~~~~l~~L~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~-------~~~~~~~~--~~~~~~~~~~r~l~l~ 517 (718)
++..++.|+++|||+... ..++|||++|++|+++++++.. .....+.. .........++.+++.
T Consensus 468 -~~~~l~~L~~ksLi~~~~------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~ 540 (1153)
T PLN03210 468 -VNIGLKNLVDKSLIHVRE------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLD 540 (1153)
T ss_pred -chhChHHHHhcCCEEEcC------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEec
Confidence 233489999999998753 3699999999999999987631 10000000 0000122334444444
Q ss_pred cCCcccccc--ccc--cccCcEeeee-------------------------------cCCccchhhhhhhhhccCCceEE
Q 047642 518 SGNMKYVSL--VHF--YPRLRSLLFF-------------------------------NPDRESINIKHLQTLCSSLRFLR 562 (718)
Q Consensus 518 ~~~~~~~~~--~~~--~~~l~~L~~~-------------------------------~~~~~~~~~~~~~~~~~~l~~L~ 562 (718)
......... ..+ +++|+.|.+. ++.. ..+|..| .+.+|+
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-----~~lP~~f-~~~~L~ 614 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-----RCMPSNF-RPENLV 614 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-----CCCCCcC-CccCCc
Confidence 322221111 111 4444444443 3221 1222222 346677
Q ss_pred EEEecCCcccccccccccchhhhhcccccEEeeccC-CcccccccccccCCCcEEEecCc-cccccChhhccccccceee
Q 047642 563 VLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCN-SLVEFPRSIGNLQCLKTMVASGN-SCWKLPSQISKLHQLRHLI 640 (718)
Q Consensus 563 ~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~ 640 (718)
.|++.+|.+. . +|..+..+++|++|+|+++ .+..+| .++.+++|++|+|++| .+..+|..|++|++|++|+
T Consensus 615 ~L~L~~s~l~---~---L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 615 KLQMQGSKLE---K---LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred EEECcCcccc---c---cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 7777777766 5 6777777777888888753 456666 4677777777777776 4667777777777777777
Q ss_pred ec-----ccCcccCCCcccccccccee
Q 047642 641 AR-----PLGHLQVSTLTNLQTLKYVN 662 (718)
Q Consensus 641 l~-----~~~p~~~~~l~~L~~L~~~~ 662 (718)
++ ..+|..+ ++++|+.|.+.+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 62 2344433 344444444433
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-41 Score=350.00 Aligned_cols=264 Identities=38% Similarity=0.636 Sum_probs=215.8
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCccc
Q 047642 166 FEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIE 245 (718)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~ 245 (718)
||.++++|.+.|....++.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999999667899999999999999999999999777999999999999999999999999999999876331
Q ss_pred chHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCCCceeeccCC
Q 047642 246 DLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDEKNFVYKLRFL 325 (718)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~~~~~~l~~L 325 (718)
. ....+.+++...+.+.|.++++||||||||+...|+.+...++.+..||+||||||+..++..+......|++++|
T Consensus 81 ~---~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 I---SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp S---SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred c---ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 1344677889999999999999999999999999999998888888899999999999998877653478999999
Q ss_pred CHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc---------------cCChhHHHHHHHHhhccccC---C
Q 047642 326 NQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR---------------EEIPHEWHTVKNHLWWHLTQ---D 387 (718)
Q Consensus 326 ~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~---------------~~~~~~w~~~~~~~~~~~~~---~ 387 (718)
+.+||++||++.++..... .++.+++.+++|+++|+ +....+|..+++.+.+.... .
T Consensus 158 ~~~ea~~L~~~~~~~~~~~-----~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESE-----SPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp -HHHHHHHHHHHHTSHS---------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999876511 23455678899999998 23567899999887766532 3
Q ss_pred CCchHhHHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCc
Q 047642 388 SDHVSPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFI 437 (718)
Q Consensus 388 ~~~i~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i 437 (718)
...+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+++|||
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 56799999999999999999999999999999999999999999999999
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6.2e-18 Score=149.10 Aligned_cols=156 Identities=24% Similarity=0.265 Sum_probs=99.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
++++..|.++.+.. ..+|+-+..+.+|++|++.+|+++ . +|.+|+.|+.|+.|++.-|++..+|..++.
T Consensus 32 ~s~ITrLtLSHNKl-----~~vppnia~l~nlevln~~nnqie---~---lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL-----TVVPPNIAELKNLEVLNLSNNQIE---E---LPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhhhhhhhcccCce-----eecCCcHHHhhhhhhhhcccchhh---h---cChhhhhchhhhheecchhhhhcCccccCC
Confidence 55556666665553 234445556666677777766666 4 666677777777777766666666766766
Q ss_pred cCCCcEEEecCcccc--ccChhhccccccceeee----cccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEE
Q 047642 610 LQCLKTMVASGNSCW--KLPSQISKLHQLRHLIA----RPLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEI 682 (718)
Q Consensus 610 l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l----~~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l 682 (718)
++-|+.||+++|++. .+|..|..|..|+.|++ ...+|+.+++|++||.|.+.+++ ...|.+++.|+.|++|.|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhc
Confidence 777777777666554 56666666666666666 24556666666666666666666 566666666666666666
Q ss_pred eec-cccHHHHhhcc
Q 047642 683 REI-PYTNMNFILQV 696 (718)
Q Consensus 683 ~~~-~~~~~~~l~~l 696 (718)
.+| ..-+|+.++++
T Consensus 181 qgnrl~vlppel~~l 195 (264)
T KOG0617|consen 181 QGNRLTVLPPELANL 195 (264)
T ss_pred ccceeeecChhhhhh
Confidence 666 45555555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=1.2e-17 Score=173.92 Aligned_cols=176 Identities=22% Similarity=0.259 Sum_probs=154.2
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+|.+++|.+...+...-....+|..+..+.+|+.+||+.|++. . +|+.+.++.+|+-|+||+|.|++|--.++.
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---~---vPecly~l~~LrrLNLS~N~iteL~~~~~~ 266 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---I---VPECLYKLRNLRRLNLSGNKITELNMTEGE 266 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC---c---chHHHhhhhhhheeccCcCceeeeeccHHH
Confidence 4444544444333333335567788899999999999999988 6 999999999999999999999999988889
Q ss_pred cCCCcEEEecCccccccChhhccccccceeee------cccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEE
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIA------RPLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEI 682 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l------~~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l 682 (718)
..+|++|++|.|+++.+|..+++|++|+.|++ ...+|.+||+|.+|+.+...+|. .-.|+.+..+..|+.|.+
T Consensus 267 W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcc
Confidence 99999999999999999999999999999988 25689999999999999998888 789999999999999999
Q ss_pred eec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 683 REI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 683 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+.| ..++|+.|.-|+.|+.|++..|..+.
T Consensus 347 ~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 347 DHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cccceeechhhhhhcCCcceeeccCCcCcc
Confidence 999 89999999999999999999987654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.63 E-value=6.3e-16 Score=187.13 Aligned_cols=174 Identities=18% Similarity=0.182 Sum_probs=90.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcc-ccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLV-EFPRSIG 608 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~ 608 (718)
+++|+.|.+.++... ..+|..+.++++|++|+|++|.+.+ . +|..++.+++|++|+|++|.+. .+|..++
T Consensus 163 l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~--~---~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 163 FSSLKVLDLGGNVLV----GKIPNSLTNLTSLEFLTLASNQLVG--Q---IPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred CCCCCEEECccCccc----ccCChhhhhCcCCCeeeccCCCCcC--c---CChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 444444444444331 1233344455555555555555443 3 4555555555555555555544 4455555
Q ss_pred ccCCCcEEEecCcccc-ccChhhccccccceeee-----cccCcccCCCccccccccceecc--ccchHHhcccCCCCeE
Q 047642 609 NLQCLKTMVASGNSCW-KLPSQISKLHQLRHLIA-----RPLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQEL 680 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l-----~~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L 680 (718)
++++|++|++++|.+. .+|..++++++|++|++ ...+|..+.++++|+.|++.+|. +..|..+.++++|+.|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 5555555555555444 44555555555555554 12344455555555555555544 3455555566666666
Q ss_pred EEeec--cccHHHHhhccCCCCeEEEeeCCCCCc
Q 047642 681 EIREI--PYTNMNFILQVNSLRSLTLQTDTAFNT 712 (718)
Q Consensus 681 ~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~ 712 (718)
++++| ....|..+..+++|+.|+|++|+..+.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 66555 344555566666666666666655443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.62 E-value=2.4e-17 Score=171.81 Aligned_cols=195 Identities=21% Similarity=0.227 Sum_probs=151.4
Q ss_pred CCceeEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
..+..||++.+|++..+.-.-. ++.||++.+..|.... +.+|.-+..+..|.+|||++|+++ . .|..+..
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn---sGiP~diF~l~dLt~lDLShNqL~---E---vP~~LE~ 124 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKN---SGIPTDIFRLKDLTILDLSHNQLR---E---VPTNLEY 124 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccccc---CCCCchhcccccceeeecchhhhh---h---cchhhhh
Confidence 3456777777776665332222 8888998888877643 345566678899999999999988 6 8888888
Q ss_pred cccccEEeeccCCcccccccc-cccCCCcEEEecCccccccChhhccccccceeeecccC-----cccCCCccccccccc
Q 047642 587 LIHLRYFGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIARPLG-----HLQVSTLTNLQTLKY 660 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~-----p~~~~~l~~L~~L~~ 660 (718)
-+++-.|+||+|+|..+|.++ -+|+.|-.||||+|.+..+|+.+..|..|+.|.++... ...++.+++|++|.+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 899999999999999999885 57888889999999999999999999999988883221 234567777777777
Q ss_pred eecc---ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 661 VNFQ---QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 661 ~~~~---~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
++.. ..+|.++..|.||+.++++.| ...+|+.+.++.+|+.|+||+|...+
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence 7665 567888888888888888888 77788888888888888888876543
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-17 Score=146.87 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=137.9
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
+..+.+++.|-|++|.++ . +|+.|..|.+|+.|++++|+|+++|.+|+.|+.|+.|+++-|.+..+|.+|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~---~---vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT---V---VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCcee---e---cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 345777888999999998 6 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeee------cccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEee
Q 047642 635 QLRHLIA------RPLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQT 706 (718)
Q Consensus 635 ~L~~L~l------~~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~ 706 (718)
.|+.|++ ...+|..+..++.|+.|.+.++. ...|.++++|++|+.|.++.| ...+|..++.+..|+.|.+.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 9999988 26688889999999999999998 889999999999999999999 888999999999999999999
Q ss_pred CCCC
Q 047642 707 DTAF 710 (718)
Q Consensus 707 ~~~~ 710 (718)
|.+.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 8763
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=1.6e-15 Score=183.58 Aligned_cols=198 Identities=20% Similarity=0.145 Sum_probs=157.4
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
...+.+.+.+..+.+....+..+ +++|+.|.+.+|... ..+|..+.++++|+.|+|++|.+.+ . +|..+
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~--~---~p~~l 232 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNLSG--E---IPYEI 232 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc----CcCChHHcCcCCccEEECcCCccCC--c---CChhH
Confidence 34567888888666554444444 788888888887653 2456777888899999999988875 5 88888
Q ss_pred hhcccccEEeeccCCcc-cccccccccCCCcEEEecCcccc-ccChhhccccccceeee-----cccCcccCCCcccccc
Q 047642 585 GKLIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCW-KLPSQISKLHQLRHLIA-----RPLGHLQVSTLTNLQT 657 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l-----~~~~p~~~~~l~~L~~ 657 (718)
+.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|++ ...+|..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 99999999999988887 67888888999999999988876 67888888999999888 2456777888888888
Q ss_pred ccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCcc
Q 047642 658 LKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTL 713 (718)
Q Consensus 658 L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 713 (718)
|++..+. +..|..++.+++|+.|++++| ...+|..++++++|+.|+|++|+..+.+
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 8888776 567788888999999999888 5577888888899999999888775543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=2.4e-14 Score=142.78 Aligned_cols=170 Identities=21% Similarity=0.191 Sum_probs=134.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
..+++.+.++.+... .+++.++.+-.|..|+..+|+++ + +|..++++..|..|++.+|+++++|+..-+
T Consensus 113 ~~~l~~l~~s~n~~~-----el~~~i~~~~~l~dl~~~~N~i~---s---lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-----ELPDSIGRLLDLEDLDATNNQIS---S---LPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred hhhhhhhhcccccee-----ecCchHHHHhhhhhhhccccccc---c---CchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 566677777666642 34455667777788888888877 6 888888888888888888888888887767
Q ss_pred cCCCcEEEecCccccccChhhccccccceeee-c---ccCcccCCCccccccccceecc-ccchHHhc-ccCCCCeEEEe
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIA-R---PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDAR-NLINLQELEIR 683 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l-~---~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~-~l~~L~~L~l~ 683 (718)
++.|+.||..+|-+..+|+.++.|.+|..|++ . ..+| +|+.++.|..|+...+. ...|.+.. ++++|..|+++
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 88888888888888888888888888888888 2 3344 78888888888877777 55666655 89999999999
Q ss_pred ec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 684 EI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 684 ~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.| ....|..++.+.+|++|++++|...+
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCCcccc
Confidence 99 88899999999999999999988754
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=6.1e-10 Score=120.66 Aligned_cols=309 Identities=15% Similarity=0.094 Sum_probs=171.3
Q ss_pred CCCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 235 (718)
..+..++||++++++|...|... +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 34567999999999999998543 2334567899999999999999999853322222335666666667788899999
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCChh------hhhHHHhhCCCCCCCcE--EEEEec
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHKS------AWESLRRAFPDNGNGSR--IVITTR 305 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gsr--iivTTR 305 (718)
+.++...... ....+.+++...+.+.+. ++..+||||+++... .+..+...+... .+++ +|.++.
T Consensus 107 ~~~l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 107 ARQLFGHPPP----SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 9998752110 112244566667777774 456899999998642 233443333222 2334 566666
Q ss_pred chhhhhhcCC------CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHH
Q 047642 306 NEPVAMITDE------KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNH 379 (718)
Q Consensus 306 ~~~v~~~~~~------~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~ 379 (718)
...+...... ....+.+++++.++..+++..++-..-.. ....+..++.+++......| +....-.++..
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~--~~~~~~~l~~i~~~~~~~~G--d~r~a~~ll~~ 257 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP--GVVDDEVLDLIADLTAREHG--DARVAIDLLRR 257 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc--CCCCHhHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 5544332211 11467899999999999998775221100 01022333334333322222 11111111110
Q ss_pred -----hhccccC-CCCchH--------hHHHhcccCCChhhHHHHhhccCC-CC-CCeecHHHHHHH--HHHcCCcCCCC
Q 047642 380 -----LWWHLTQ-DSDHVS--------PILALSYDELPYQLKSCFLYLSLF-PE-DSLIDTEKLIRL--WIAEGFIPEEE 441 (718)
Q Consensus 380 -----~~~~~~~-~~~~i~--------~~l~~sy~~L~~~~k~cfl~la~F-p~-~~~i~~~~li~~--W~a~g~i~~~~ 441 (718)
....... ..+.+. ....-.+..||.+.|..+..++.. .. ...+....+... .+++.+- ...
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~-~~~ 336 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG-YEP 336 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC-CCc
Confidence 0000000 111111 233456889999988877766532 21 133555554432 2332211 111
Q ss_pred CCHHHHHHHHHHHHhhccccchhhcc---CCcEeEEEeC
Q 047642 442 QDMENVAEEYLKELIDRSMIQIAERY---LDKVKTCRIH 477 (718)
Q Consensus 442 ~~~e~~~~~~l~~L~~rsll~~~~~~---~~~~~~~~mH 477 (718)
.+ ......|+++|.+.++|...... .|+...++++
T Consensus 337 ~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 337 RT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred Cc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 12 23356699999999999865321 2555555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=9.6e-14 Score=138.53 Aligned_cols=188 Identities=22% Similarity=0.211 Sum_probs=159.0
Q ss_pred eEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccc
Q 047642 512 RRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHL 590 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L 590 (718)
..+.++.+.....++... ...+.++.++.+.. ..+|....++..|+.|+.++|.+. . +|++|+.+..|
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-----s~lp~~i~s~~~l~~l~~s~n~~~---e---l~~~i~~~~~l 139 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-----SELPEQIGSLISLVKLDCSSNELK---E---LPDSIGRLLDL 139 (565)
T ss_pred eEEEeccchhhhCCHHHHHHHHHHHhhcccchH-----hhccHHHhhhhhhhhhhcccccee---e---cCchHHHHhhh
Confidence 345556566665444333 67777787777653 456777788899999999999988 6 99999999999
Q ss_pred cEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc-c
Q 047642 591 RYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-Q 665 (718)
Q Consensus 591 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~ 665 (718)
..|+..+|+++.+|++++++..|..|++.+|+++.+|+..-+++.|++|+++ ..+|+.++.+.+|..|++..+. .
T Consensus 140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence 9999999999999999999999999999999999999998789999999982 6789999999999999999998 5
Q ss_pred cchHHhcccCCCCeEEEeec-cccHHHHhh-ccCCCCeEEEeeCCCCC
Q 047642 666 WDAVDARNLINLQELEIREI-PYTNMNFIL-QVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 666 ~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~-~l~~L~~L~l~~~~~~~ 711 (718)
..| +|+.+..|.+|.+..| ...+|+... ++.+|..|+|++|+.-+
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc
Confidence 555 9999999999999999 777787766 89999999999987643
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=1e-09 Score=132.35 Aligned_cols=289 Identities=15% Similarity=0.195 Sum_probs=166.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC-CCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE-YTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~i~~~l 239 (718)
..+|-|+ +|.+.|... ...+++.|+|++|.||||++..+..+ ++.++|+++... -++..++..++..+
T Consensus 14 ~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 3455555 444444433 35789999999999999999998862 235899999754 46677778888877
Q ss_pred cCCcccchHH----hhh---cCHHHHHHHHHHHhc--CceEEEEEecCCChh--h-hhHHHhhCCCCCCCcEEEEEecch
Q 047642 240 QKPKIEDLEL----MER---MTEEDLELHLYEFLE--GRRYLVVVDDIWHKS--A-WESLRRAFPDNGNGSRIVITTRNE 307 (718)
Q Consensus 240 ~~~~~~~~~~----~~~---~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~~--~-~~~l~~~l~~~~~gsriivTTR~~ 307 (718)
........+. ... .+...+...+...+. +.+++|||||+...+ . .+.+...++....+.++|||||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 5321110000 001 122333333444443 678999999997542 2 223333344445677899999984
Q ss_pred hhhhh--cCCCCceeecc----CCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhh
Q 047642 308 PVAMI--TDEKNFVYKLR----FLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLW 381 (718)
Q Consensus 308 ~v~~~--~~~~~~~~~l~----~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~ 381 (718)
.-... ........++. +|+.+|+.++|.......- -.+....|.+.|++ .+..-.-+.....
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----------~~~~~~~l~~~t~G-wp~~l~l~~~~~~ 230 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----------EAAESSRLCDDVEG-WATALQLIALSAR 230 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----------CHHHHHHHHHHhCC-hHHHHHHHHHHHh
Confidence 32111 11111344555 8999999999986543211 12234556666642 1111111111110
Q ss_pred c----------cccC-CCCchHhHHH-hcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHH
Q 047642 382 W----------HLTQ-DSDHVSPILA-LSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAE 449 (718)
Q Consensus 382 ~----------~~~~-~~~~i~~~l~-~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~ 449 (718)
. .... ....+...+. -.++.||++.+..++..|+++. ++.+.+- .+.. .+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~------~l~~------~~~~~ 295 (903)
T PRK04841 231 QNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIV------RVTG------EENGQ 295 (903)
T ss_pred hCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHH------HHcC------CCcHH
Confidence 0 0000 1123444433 3488999999999999999973 3322221 1111 11257
Q ss_pred HHHHHHhhccccchhhccCCcEeEEEeCHHHHHHHHHhhh
Q 047642 450 EYLKELIDRSMIQIAERYLDKVKTCRIHDLIRELAIKKAR 489 (718)
Q Consensus 450 ~~l~~L~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~ 489 (718)
..+++|.+.+++..... +...+|+.|++++++.+....
T Consensus 296 ~~L~~l~~~~l~~~~~~--~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 296 MRLEELERQGLFIQRMD--DSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred HHHHHHHHCCCeeEeec--CCCCEEehhHHHHHHHHHHHH
Confidence 88999999999754221 122478999999999988764
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=4e-11 Score=146.00 Aligned_cols=121 Identities=23% Similarity=0.207 Sum_probs=63.1
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-ccccccccccchhhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRLTDSIGK 586 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~p~~i~~ 586 (718)
+...|.+.+..+....++......+|+.|.+.++... .++..+..+++|+.|+|+++. +. . +| .++.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~~~l~~Lk~L~Ls~~~~l~---~---ip-~ls~ 655 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGVHSLTGLRNIDLRGSKNLK---E---IP-DLSM 655 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-----ccccccccCCCCCEEECCCCCCcC---c---CC-cccc
Confidence 3456777776554444322222566777766665432 233334556666666666543 22 2 44 2555
Q ss_pred cccccEEeecc-CCcccccccccccCCCcEEEecCc-cccccChhhccccccceeee
Q 047642 587 LIHLRYFGFKC-NSLVEFPRSIGNLQCLKTMVASGN-SCWKLPSQISKLHQLRHLIA 641 (718)
Q Consensus 587 l~~L~~L~l~~-~~l~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l 641 (718)
+++|++|+|++ +.+..+|.++++|++|+.|++++| .+..+|..+ ++++|++|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 55566666553 334555555555555666665554 445555544 4445555444
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.21 E-value=5.7e-12 Score=131.58 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=113.6
Q ss_pred ceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhh
Q 047642 510 LTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGK 586 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~ 586 (718)
..|.+.++.|.+.++....+ -.+++.|.+.+|.... .-.+.|.++.+|.+|.|+.|.++ . +| ..|.+
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~----l~~~~F~~lnsL~tlkLsrNrit---t---Lp~r~Fk~ 219 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT----LETGHFDSLNSLLTLKLSRNRIT---T---LPQRSFKR 219 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc----cccccccccchheeeecccCccc---c---cCHHHhhh
Confidence 34445555444444333333 3455566665555432 11244555556666666666665 4 55 34445
Q ss_pred cccccEEeeccCCcccc-cccccccCCCcEEEecCccccccChh-hccccccceeeec-c---c-CcccCCCcccccccc
Q 047642 587 LIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-P---L-GHLQVSTLTNLQTLK 659 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-~---~-~p~~~~~l~~L~~L~ 659 (718)
|++|+.|+|..|.|... --.+..|.+|+.|.|..|.|..+-++ |..|.++++|++. . . --.++..|+.|+.|+
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence 66666666666666544 22345566666666666666666554 5667777777761 1 1 123466778888888
Q ss_pred ceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCC
Q 047642 660 YVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 660 ~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
++.|. ...+......++|+.|+++.| ..-.+.++..|+.|+.|+|+.|+.
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 77776 455666777778888888887 444456777888888888888754
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=4.7e-12 Score=132.17 Aligned_cols=195 Identities=17% Similarity=0.143 Sum_probs=159.7
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccccccccc-chh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRL-TDS 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~-p~~ 583 (718)
...++.+|.+.+|.+..+....| +.+|.+|.+..|.... .++..|+++++|+.|+|..|.|. . . --.
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~ir---i---ve~lt 240 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIR---I---VEGLT 240 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccc----cCHHHhhhcchhhhhhcccccee---e---ehhhh
Confidence 34568899999888877666666 7789999999888643 55678889999999999999987 2 2 246
Q ss_pred hhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeec-----ccCcccCCCccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
|..|.+|+.|.|..|.|.+|-.. +..|.++++|+|+.|+++.+-.+ +.+|.+|++|+++ ...+.+....++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 88999999999999999999876 56799999999999999988654 7899999999993 33456677888999
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec-cccH-HHHhhccCCCCeEEEeeCCCCC
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTN-MNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.|+++.|. ...++.|..|..|++|+++.| ...+ -..|..+++|+.|+|++|.+..
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 99999988 667888999999999999999 2222 3357789999999999987643
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.1e-12 Score=136.73 Aligned_cols=152 Identities=22% Similarity=0.222 Sum_probs=121.8
Q ss_pred hhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChh
Q 047642 550 HLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQ 629 (718)
Q Consensus 550 ~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~ 629 (718)
.+|..+..|-.|..+.|..|.+. . +|..+++|..|.||+|+.|+++.+|..+|.|+ |+.|.+++|+++.+|..
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r---~---ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIR---T---IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE 161 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccce---e---cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc
Confidence 34555566667777788888777 6 88888888888888888888888888888876 88888888888888888
Q ss_pred hccccccceeeec----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEE
Q 047642 630 ISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLT 703 (718)
Q Consensus 630 i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~ 703 (718)
|+.+.+|.+|+.+ ..+|..++.|.+|+.|.+..+. ...|.++..|+ |..|++++| ...+|-.|.+|++|++|-
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeee
Confidence 8877888888772 4567788888888888877777 67788888665 888888888 778888888888888888
Q ss_pred EeeCCC
Q 047642 704 LQTDTA 709 (718)
Q Consensus 704 l~~~~~ 709 (718)
|.+|-+
T Consensus 241 LenNPL 246 (722)
T KOG0532|consen 241 LENNPL 246 (722)
T ss_pred eccCCC
Confidence 888765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=4.8e-11 Score=135.94 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=120.1
Q ss_pred CCCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
.+..++.+.+..|.+..+ +..+.++|+.|.+.+|.... +|..+ ..+|+.|+|++|.+. . +|..+.
T Consensus 197 Ip~~L~~L~Ls~N~LtsL-P~~l~~nL~~L~Ls~N~Lts-----LP~~l--~~~L~~L~Ls~N~L~---~---LP~~l~- 261 (754)
T PRK15370 197 IPEQITTLILDNNELKSL-PENLQGNIKTLYANSNQLTS-----IPATL--PDTIQEMELSINRIT---E---LPERLP- 261 (754)
T ss_pred cccCCcEEEecCCCCCcC-ChhhccCCCEEECCCCcccc-----CChhh--hccccEEECcCCccC---c---CChhHh-
Confidence 345678888887776653 34446789999998887532 33322 246899999999988 6 887765
Q ss_pred cccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCcccccccccee
Q 047642 587 LIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVN 662 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~ 662 (718)
.+|++|++++|+|+.+|..+. .+|++|++++|+++.+|..+. ++|++|++. ..+|..+. ++|+.|.+.+
T Consensus 262 -s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~ 334 (754)
T PRK15370 262 -SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGE 334 (754)
T ss_pred -CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccC
Confidence 579999999999999998765 489999999999988887553 356666662 22333322 4666676666
Q ss_pred cc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 663 FQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 663 ~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
|. ...|..+. ++|+.|++++| ...+|..+. ++|+.|+|++|++.
T Consensus 335 N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 335 NALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC
Confidence 65 34444442 56777777776 334454442 46777777766553
No 19
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=5.2e-09 Score=112.18 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=161.1
Q ss_pred CCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccc-CCC---ceEEEEEecCCCCHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVK-GGF---DCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~l~ 233 (718)
+..++||++++++|..+|... +.....+.|+|++|+|||++++.++++..-. ... -..+|++.....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 447999999999999998652 2334578999999999999999999852111 111 1356777777677888999
Q ss_pred HHHHHhcC---CcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCChh-----hhhHHHhhCCC-CC--CCcEE
Q 047642 234 KTIKSFQK---PKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHKS-----AWESLRRAFPD-NG--NGSRI 300 (718)
Q Consensus 234 ~i~~~l~~---~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~~-----~~~~l~~~l~~-~~--~gsri 300 (718)
.++.++.. ... ....+..++...+.+.+. +++++||||+++... .+..+...... .. ..-.+
T Consensus 94 ~i~~~l~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~l 168 (365)
T TIGR02928 94 ELANQLRGSGEEVP-----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGV 168 (365)
T ss_pred HHHHHHhhcCCCCC-----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEE
Confidence 99999842 111 011233445555556553 568899999998651 12233222111 11 22344
Q ss_pred EEEecchhhhhhcC----C--CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHH
Q 047642 301 VITTRNEPVAMITD----E--KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWH 374 (718)
Q Consensus 301 ivTTR~~~v~~~~~----~--~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~ 374 (718)
|.+|.......... . ....+.+++.+.++-.+++..++-....+ ...+++..+...+++....+..... .
T Consensus 169 I~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~---~~~~~~~l~~i~~~~~~~~Gd~R~a-l 244 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYD---GVLDDGVIPLCAALAAQEHGDARKA-I 244 (365)
T ss_pred EEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccC---CCCChhHHHHHHHHHHHhcCCHHHH-H
Confidence 55555443322111 1 11467899999999999998876311110 0022232233333333332111111 1
Q ss_pred HHHHHhh----c-cccC-CCCchH--------hHHHhcccCCChhhHHHHhhccCCC--CCCeecHHHHHHHH--HHcCC
Q 047642 375 TVKNHLW----W-HLTQ-DSDHVS--------PILALSYDELPYQLKSCFLYLSLFP--EDSLIDTEKLIRLW--IAEGF 436 (718)
Q Consensus 375 ~~~~~~~----~-~~~~-~~~~i~--------~~l~~sy~~L~~~~k~cfl~la~Fp--~~~~i~~~~li~~W--~a~g~ 436 (718)
.++.... . .... ..+.+. ....-+...||.+.|..+..++..- .+..+....+...+ +++.
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~- 323 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCED- 323 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHh-
Confidence 1111100 0 0000 111111 2334456789998887766655211 33445666666533 1221
Q ss_pred cCCCCCCHHHHHHHHHHHHhhccccchhh
Q 047642 437 IPEEEQDMENVAEEYLKELIDRSMIQIAE 465 (718)
Q Consensus 437 i~~~~~~~e~~~~~~l~~L~~rsll~~~~ 465 (718)
+. .....+.....+++.|...|+|....
T Consensus 324 ~~-~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 324 IG-VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred cC-CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 11222456788999999999998754
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.13 E-value=2.9e-09 Score=117.35 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC-CCHHHHHHHHHHHhcCCcccchHH
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE-YTTRDLLQKTIKSFQKPKIEDLEL 249 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~i~~~l~~~~~~~~~~ 249 (718)
.++.+.|... .+.+++.|..++|.|||||+.+... +. ..-..++|.++... -++..++..++..++.-.+...+.
T Consensus 25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 4555556554 3589999999999999999999975 11 22345899998775 467888888998887522211111
Q ss_pred h-------hhcCHHHHHHHHHHHhc--CceEEEEEecCC---ChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCC-
Q 047642 250 M-------ERMTEEDLELHLYEFLE--GRRYLVVVDDIW---HKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDEK- 316 (718)
Q Consensus 250 ~-------~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~---~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~- 316 (718)
. ...+...+...+..-+. .++..+||||-. +..--..+...+.....+-.+|||||+..-.....-.
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 1 12234445555555553 468999999975 3333344444455566788999999988644332211
Q ss_pred -Cceeecc----CCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhccccC-----
Q 047642 317 -NFVYKLR----FLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWWHLTQ----- 386 (718)
Q Consensus 317 -~~~~~l~----~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~~~~~----- 386 (718)
....++. .++.+|+-++|.......-. +.-.+.+.+ ..+.|-..++-..-...+
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----------~~~~~~L~~-----~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----------AADLKALYD-----RTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----------hHHHHHHHh-----hcccHHHHHHHHHHHccCCCcHH
Confidence 1233333 48999999999876532111 111222222 245666665433211111
Q ss_pred ----CCC----chHh-HHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHHhh
Q 047642 387 ----DSD----HVSP-ILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELID 457 (718)
Q Consensus 387 ----~~~----~i~~-~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~~L~~ 457 (718)
..+ .+.. ...--++.||+++|..++-+|+++.-. +.|+..-. -++.+...+++|..
T Consensus 245 q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~----~eL~~~Lt-----------g~~ng~amLe~L~~ 309 (894)
T COG2909 245 QSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFN----DELCNALT-----------GEENGQAMLEELER 309 (894)
T ss_pred HHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhh----HHHHHHHh-----------cCCcHHHHHHHHHh
Confidence 011 1111 234457899999999999999986532 22222211 13347889999999
Q ss_pred ccccchhhccCCcEeEEEeCHHHHHHHHHhhhh
Q 047642 458 RSMIQIAERYLDKVKTCRIHDLIRELAIKKARA 490 (718)
Q Consensus 458 rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~ 490 (718)
++|+-..-+ +...+|+.|.++.||.+...+.
T Consensus 310 ~gLFl~~Ld--d~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 310 RGLFLQRLD--DEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCCceeeec--CCCceeehhHHHHHHHHhhhcc
Confidence 999875443 3346999999999999877664
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=1.6e-10 Score=131.05 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=41.9
Q ss_pred cccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCCcc
Q 047642 653 TNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFNTL 713 (718)
Q Consensus 653 ~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 713 (718)
++|+.|++.+|. ...|.. ..+|+.|++++| ...+|.++.++++|+.|+|++|.+.+..
T Consensus 402 s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 402 SELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred cCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 456666666665 333332 235777888888 6678899999999999999999887653
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.04 E-value=3.3e-11 Score=132.62 Aligned_cols=154 Identities=24% Similarity=0.257 Sum_probs=111.1
Q ss_pred hhhhhhhccCCceEEEEEecCCcccccccccccchhhh-hccc-ccEEeeccCCccccc---------------------
Q 047642 548 IKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG-KLIH-LRYFGFKCNSLVEFP--------------------- 604 (718)
Q Consensus 548 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~-~l~~-L~~L~l~~~~l~~lp--------------------- 604 (718)
++.+|.....++.|++|+|..|++. . +|+.+- .+.. |+.|+.++|++..+|
T Consensus 299 l~yip~~le~~~sL~tLdL~~N~L~---~---lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSNNLP---S---LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhCCCcccccceeeeeeehhcccc---c---cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 3456666777888999999888887 5 665332 1111 344444444433333
Q ss_pred ----ccccccCCCcEEEecCccccccChh-hccccccceeeec----ccCcccCCCccccccccceecc-ccchHHhccc
Q 047642 605 ----RSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNL 674 (718)
Q Consensus 605 ----~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l 674 (718)
+-+.+..+|+.|+|++|++.++|.. +.+|..|++|+++ ..+|..+.++..|++|....|. ...| ++.++
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l 451 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQL 451 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhc
Confidence 2455678899999999999999976 6788889999883 4577788888999999888777 6677 89999
Q ss_pred CCCCeEEEeec---cccHHHHhhccCCCCeEEEeeCCC
Q 047642 675 INLQELEIREI---PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 675 ~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+.|+.+|++.| ...+|..... ++|++|+++||..
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 99999999988 4444544433 7999999999874
No 23
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.5e-09 Score=100.60 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=86.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCC----CceEEEEEecCCCCHH---HHHHHHHHHhcCCcccchHHhhhcCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGG----FDCRAWVCVTQEYTTR---DLLQKTIKSFQKPKIEDLELMERMTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~l~~i~~~l~~~~~~~~~~~~~~~~~~ 257 (718)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...+..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---------~~~~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---------PIEE 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---------hhHH
Confidence 57899999999999999999986433332 4456677665544332 233333333322111 0011
Q ss_pred HHHHHHHHh-cCceEEEEEecCCChhh---------hhH-HHhhCCC-CCCCcEEEEEecchhhhhh--cCCCCceeecc
Q 047642 258 LELHLYEFL-EGRRYLVVVDDIWHKSA---------WES-LRRAFPD-NGNGSRIVITTRNEPVAMI--TDEKNFVYKLR 323 (718)
Q Consensus 258 l~~~l~~~L-~~k~~LlVLDdv~~~~~---------~~~-l~~~l~~-~~~gsriivTTR~~~v~~~--~~~~~~~~~l~ 323 (718)
.+...+ ..++++||||++++... +.. +...++. ..++.++|||||....... .-.....++++
T Consensus 72 ---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 72 ---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred ---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 122222 56899999999975432 222 2233332 3568999999998876322 11222579999
Q ss_pred CCCHHhHHHHHHhh
Q 047642 324 FLNQEESWKLFCKK 337 (718)
Q Consensus 324 ~L~~~es~~Lf~~~ 337 (718)
+|++++..+++.++
T Consensus 149 ~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 149 PFSEEDIKQYLRKY 162 (166)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988754
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.98 E-value=1.1e-09 Score=124.91 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=128.4
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLR 591 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~ 591 (718)
..+.+....+.. .+..+.++++.|.+.+|.... +|..+ +++|+.|++++|.++ . +|..+. .+|+
T Consensus 181 ~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~Lts-----LP~~l--~~nL~~L~Ls~N~Lt---s---LP~~l~--~~L~ 244 (754)
T PRK15370 181 TELRLKILGLTT-IPACIPEQITTLILDNNELKS-----LPENL--QGNIKTLYANSNQLT---S---IPATLP--DTIQ 244 (754)
T ss_pred eEEEeCCCCcCc-CCcccccCCcEEEecCCCCCc-----CChhh--ccCCCEEECCCCccc---c---CChhhh--cccc
Confidence 445565444444 233346789999999887643 33322 257999999999998 6 887664 4799
Q ss_pred EEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc-cc
Q 047642 592 YFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QW 666 (718)
Q Consensus 592 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~ 666 (718)
.|+|++|.+..+|..+. .+|+.|++++|+++.+|..+. .+|++|+++ ..+|..+. ++|+.|++.+|. ..
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc
Confidence 99999999999998875 589999999999999998765 589999983 23444333 468888888877 44
Q ss_pred chHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 667 DAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 667 ~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.|..+ .++|+.|++++| ...+|..+. ++|+.|+|++|++.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCC
Confidence 44433 368999999999 555676664 79999999998764
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.7e-09 Score=113.77 Aligned_cols=179 Identities=17% Similarity=0.090 Sum_probs=107.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc-ccccEEeeccCCcc-----cc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL-IHLRYFGFKCNSLV-----EF 603 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l-~~L~~L~l~~~~l~-----~l 603 (718)
+++|+.|.+.++.........+...... ++|+.|++++|.+.+ .....+...+..+ ++|+.|++++|.++ .+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGD-RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccch-HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 5577777777766532111122222233 458888888877652 0111133455566 77888888887776 34
Q ss_pred cccccccCCCcEEEecCcccc-----ccChhhccccccceeeec-c--------cCcccCCCccccccccceecc--ccc
Q 047642 604 PRSIGNLQCLKTMVASGNSCW-----KLPSQISKLHQLRHLIAR-P--------LGHLQVSTLTNLQTLKYVNFQ--QWD 667 (718)
Q Consensus 604 p~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~-~--------~~p~~~~~l~~L~~L~~~~~~--~~~ 667 (718)
+..+..+.+|++|++++|.++ .++..+..+++|++|+++ . .++..+..+++|+.|++.++. ...
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 445566677888888888766 344455566688888772 1 123345566778877777765 212
Q ss_pred hHHhc-----ccCCCCeEEEeec-c-----ccHHHHhhccCCCCeEEEeeCCCC
Q 047642 668 AVDAR-----NLINLQELEIREI-P-----YTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 668 ~~~l~-----~l~~L~~L~l~~~-~-----~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+..+. ..++|+.|++++| . ..+...+..+++|++|++++|+..
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 22222 2367888888877 1 234556666778888888887764
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.88 E-value=5.2e-10 Score=123.41 Aligned_cols=194 Identities=18% Similarity=0.164 Sum_probs=136.2
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
....+++....|.+..........++..+.++.+.. ..+|+++..+.+|+.++..+|.+. . +|..+..+
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l-----~~lp~wi~~~~nle~l~~n~N~l~---~---lp~ri~~~ 286 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL-----SNLPEWIGACANLEALNANHNRLV---A---LPLRISRI 286 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhh-----hcchHHHHhcccceEecccchhHH---h---hHHHHhhh
Confidence 445667777766555322222266788888877664 345688899999999999999997 6 99999999
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhc-ccc-ccceeee------------------------
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQIS-KLH-QLRHLIA------------------------ 641 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~-~L~-~L~~L~l------------------------ 641 (718)
..|++|++..|.++.+|+....+++|++|+|..|++..+|..+- .+. +|+.|+.
T Consensus 287 ~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 99999999999999999988899999999999999988887532 111 1332222
Q ss_pred -c----ccCcccCCCccccccccceecc-c-cchHHhcccCCCCeEEEeec-cccHHH----------------------
Q 047642 642 -R----PLGHLQVSTLTNLQTLKYVNFQ-Q-WDAVDARNLINLQELEIREI-PYTNMN---------------------- 691 (718)
Q Consensus 642 -~----~~~p~~~~~l~~L~~L~~~~~~-~-~~~~~l~~l~~L~~L~l~~~-~~~~~~---------------------- 691 (718)
+ ...-+-+.++.+|+.|++.+|. . .....+.++..|++|++++| ...+|.
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP 446 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP 446 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence 0 1122234566778888888776 3 34445677788888888887 333333
Q ss_pred HhhccCCCCeEEEeeCCCCCc
Q 047642 692 FILQVNSLRSLTLQTDTAFNT 712 (718)
Q Consensus 692 ~l~~l~~L~~L~l~~~~~~~~ 712 (718)
.+.+++.|+.++|++|++...
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hhhhcCcceEEecccchhhhh
Confidence 556677777778877776543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2e-09 Score=100.13 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=23.5
Q ss_pred cCCceEEEEEecCCcccccccccccchhhh-hcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhh-ccc
Q 047642 556 SSLRFLRVLDLEDTRIEHSGKVLRLTDSIG-KLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQI-SKL 633 (718)
Q Consensus 556 ~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~L 633 (718)
.+...++.|+|++|.|+ . + +.++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|.|++++..+ ..+
T Consensus 16 ~n~~~~~~L~L~~n~I~---~---I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS---T---I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccc---c---c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhC
Confidence 34446788888888877 4 3 3455 5678888888888888776 5777888888888888888876655 357
Q ss_pred cccceeee
Q 047642 634 HQLRHLIA 641 (718)
Q Consensus 634 ~~L~~L~l 641 (718)
++|++|++
T Consensus 88 p~L~~L~L 95 (175)
T PF14580_consen 88 PNLQELYL 95 (175)
T ss_dssp TT--EEE-
T ss_pred CcCCEEEC
Confidence 77777776
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.2e-10 Score=121.73 Aligned_cols=165 Identities=26% Similarity=0.335 Sum_probs=140.7
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+-.|.++.+..|.+ ..++..+.++..|++|||+.|+++ . +|..++.|+ |+.|-+++|+++.+|+.|+.
T Consensus 97 f~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS---~---lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 97 FVSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLS---H---LPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred HHHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhh---c---CChhhhcCc-ceeEEEecCccccCCccccc
Confidence 66677777776664 355677889999999999999998 6 999998886 89999999999999999999
Q ss_pred cCCCcEEEecCccccccChhhccccccceeee-c---ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEee
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIA-R---PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIRE 684 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l-~---~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~ 684 (718)
+..|..||.+.|.+..+|+.+++|.+|+.|.+ + ..+|..++.|+ |..|+++.|+ ..+|-.|.+|+.|+.|-|.+
T Consensus 165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeecc
Confidence 99999999999999999999999999999988 2 56788888554 7789988888 88999999999999999999
Q ss_pred c-cccHHHHhhc---cCCCCeEEEeeC
Q 047642 685 I-PYTNMNFILQ---VNSLRSLTLQTD 707 (718)
Q Consensus 685 ~-~~~~~~~l~~---l~~L~~L~l~~~ 707 (718)
| ....|..|+. .+=.++|++..|
T Consensus 244 NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 244 NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCCCCChHHHHhccceeeeeeecchhc
Confidence 9 5556666654 345678888888
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.86 E-value=6.9e-08 Score=100.69 Aligned_cols=271 Identities=14% Similarity=0.119 Sum_probs=146.5
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
.+|||+++.++++..++... ......+.++|++|+|||+||+.+.+. ....| ..+..+..... ..+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHHH
Confidence 36899999999998888632 223556889999999999999999984 33222 11211111111 22223333
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCC-C
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDE-K 316 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~-~ 316 (718)
.+.....--.++++.... ...+.+...+.+.+..+|+++..+...|.. .+ .+.+-|..||+...+...... .
T Consensus 78 ~~~~~~vl~iDEi~~l~~-~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSP-AVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCH-HHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 333222111111222221 223445566666666677777655544321 11 234556667776544332111 1
Q ss_pred CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhcc---cc-C--CC--
Q 047642 317 NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWWH---LT-Q--DS-- 388 (718)
Q Consensus 317 ~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~~---~~-~--~~-- 388 (718)
...+++++++.++..+++.+.+...... .+ .+....|++.|++.-. .-..+++..... .. . ..
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~-----~~---~~al~~ia~~~~G~pR-~~~~ll~~~~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVE-----IE---PEAALEIARRSRGTPR-IANRLLRRVRDFAQVRGQKIINRDI 221 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCC-----cC---HHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 1468999999999999999877532221 11 3455678888864321 112233222111 00 0 11
Q ss_pred -CchHhHHHhcccCCChhhHHHHh-hccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHH-HHhhccccchh
Q 047642 389 -DHVSPILALSYDELPYQLKSCFL-YLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLK-ELIDRSMIQIA 464 (718)
Q Consensus 389 -~~i~~~l~~sy~~L~~~~k~cfl-~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~-~L~~rsll~~~ 464 (718)
......+...|..|+++.+..+. .++.++.+ .+..+.+-... ..+ ...++..++ .|++.+||+..
T Consensus 222 v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~~----~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 222 ALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GED----ADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CCC----cchHHHhhhHHHHHcCCcccC
Confidence 12233356678889888777666 44666543 34433332221 111 223666778 69999999744
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=1.8e-09 Score=117.15 Aligned_cols=170 Identities=28% Similarity=0.331 Sum_probs=136.1
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCc-eEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLR-FLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIG 608 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~ 608 (718)
.+.+..|.+.++... .++.....+. +|+.|++++|.+. . +|..++.+++|+.|+++.|++..+|...+
T Consensus 115 ~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~---~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 183 (394)
T COG4886 115 LTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIE---S---LPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183 (394)
T ss_pred ccceeEEecCCcccc-----cCccccccchhhcccccccccchh---h---hhhhhhccccccccccCCchhhhhhhhhh
Confidence 456777877777653 3445555564 8999999999988 6 87889999999999999999999998888
Q ss_pred ccCCCcEEEecCccccccChhhccccccceeee-c---ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEe
Q 047642 609 NLQCLKTMVASGNSCWKLPSQISKLHQLRHLIA-R---PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIR 683 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l-~---~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~ 683 (718)
.+.+|+.|++++|.+..+|..+..+..|..|.+ . ...+..+.++.++..|.+..+. ...+..++.+++|+.|+++
T Consensus 184 ~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 899999999999999999988877778988888 2 3456667788888888755555 4447888999999999999
Q ss_pred ec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 684 EI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 684 ~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+| ...++. ++.+.+|+.|+++++....
T Consensus 264 ~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 264 NNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccccc-ccccCccCEEeccCccccc
Confidence 99 444443 8999999999999977654
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.83 E-value=8.1e-08 Score=100.89 Aligned_cols=272 Identities=17% Similarity=0.145 Sum_probs=145.4
Q ss_pred CCceeeccccHHHHHHHHhc---CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLK---DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
-.+|+|+++.++.+..++.. .......+.|+|++|+||||||+.+.+. ....+ .++..+ .......+..++
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cccChHHHHHHH
Confidence 45699999999998887754 2334567889999999999999999994 33222 112111 112222233333
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDEK 316 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~ 316 (718)
..+......-.++++..+. ...+.+...+.+.+..+|+|+..+...+. ..+ .+.+-|..||+...+.......
T Consensus 98 ~~l~~~~vl~IDEi~~l~~-~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSP-VVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcch-HHHHHHHHHHHhcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHHHHh
Confidence 3332211110111111111 12223344444555555555544332211 011 1245566677755443221111
Q ss_pred -CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhc-cc----cC----
Q 047642 317 -NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWW-HL----TQ---- 386 (718)
Q Consensus 317 -~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~-~~----~~---- 386 (718)
...+++++++.++..+++.+.+...... .+ .+....|++.|++ .+.....+++.... .. ..
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~-----~~---~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVE-----ID---EEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCC-----cC---HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 1468999999999999999887543321 12 3467788888864 22333333332211 00 00
Q ss_pred CCCchHhHHHhcccCCChhhHHHHh-hccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHH-HHhhccccchh
Q 047642 387 DSDHVSPILALSYDELPYQLKSCFL-YLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLK-ELIDRSMIQIA 464 (718)
Q Consensus 387 ~~~~i~~~l~~sy~~L~~~~k~cfl-~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~-~L~~rsll~~~ 464 (718)
........+...|..|++..+..+. .+..|+.+ .+..+.+-. .+..+..+ +++.++ .|++.+||+..
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~------~lg~~~~~----~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAA------ALGEERDT----IEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHH------HHCCCcch----HHHHhhHHHHHcCCcccC
Confidence 1112334456778889888877775 66677766 345444422 22222233 555566 89999999743
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=3.4e-09 Score=111.39 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=135.9
Q ss_pred CCceeEEEeecCCccccccccc--cc---cCcEeeeecCCccchhhhhhhhhccCC-ceEEEEEecCCcccccccccccc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YP---RLRSLLFFNPDRESINIKHLQTLCSSL-RFLRVLDLEDTRIEHSGKVLRLT 581 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~---~l~~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~l~~~p 581 (718)
..+.+++.+..+.........+ +. +|+.|.+.++.........+...+..+ ++|+.|++++|.+++. ....++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA-SCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch-HHHHHH
Confidence 4467888888665543222222 33 499999998876432233344456667 8999999999998730 111144
Q ss_pred hhhhhcccccEEeeccCCcc-----cccccccccCCCcEEEecCcccc-----ccChhhccccccceeeeccc-Ccc---
Q 047642 582 DSIGKLIHLRYFGFKCNSLV-----EFPRSIGNLQCLKTMVASGNSCW-----KLPSQISKLHQLRHLIARPL-GHL--- 647 (718)
Q Consensus 582 ~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~-~p~--- 647 (718)
..+..+.+|++|++++|.++ .++..+..+++|+.|++++|.+. .++..+..+++|++|+++.. +..
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 56677789999999999887 35555666789999999999775 34556778899999998322 111
Q ss_pred -cCC-----Cccccccccceecc------ccchHHhcccCCCCeEEEeec--c----ccHHHHhhcc-CCCCeEEEeeCC
Q 047642 648 -QVS-----TLTNLQTLKYVNFQ------QWDAVDARNLINLQELEIREI--P----YTNMNFILQV-NSLRSLTLQTDT 708 (718)
Q Consensus 648 -~~~-----~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~--~----~~~~~~l~~l-~~L~~L~l~~~~ 708 (718)
.+. ..+.|+.|++..+. ......+..+++|+.|++++| . ..+...+... ++|++|++..+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 111 24688888887776 134556777889999999999 2 2344555555 789999988754
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=8.2e-08 Score=95.06 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=91.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...+.|+|++|+|||+||+++++. ...+.....|+++.... ... . .+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~-----------------------~----~~~ 86 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS-----------------------P----AVL 86 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh-----------------------H----HHH
Confidence 357899999999999999999995 32233345676653110 000 0 011
Q ss_pred HHhcCceEEEEEecCCCh---hhhhH-HHhhCCCC-CCCcEEEEE-ecc---------hhhhhhcCCCCceeeccCCCHH
Q 047642 264 EFLEGRRYLVVVDDIWHK---SAWES-LRRAFPDN-GNGSRIVIT-TRN---------EPVAMITDEKNFVYKLRFLNQE 328 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~~-~~gsriivT-TR~---------~~v~~~~~~~~~~~~l~~L~~~ 328 (718)
+.+. +.-+|||||+|.. ..|+. +...+... ..|+.+||+ ++. +.+...+..+ ..+++++++.+
T Consensus 87 ~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e 164 (229)
T PRK06893 87 ENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDE 164 (229)
T ss_pred hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHH
Confidence 1121 2348999999863 45653 33333321 245666554 443 3555555544 68899999999
Q ss_pred hHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 329 ESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 329 es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
+.++++.++++..... .+ +++..-|++++.+ +...-..+++.+
T Consensus 165 ~~~~iL~~~a~~~~l~-----l~---~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 165 QKIIVLQRNAYQRGIE-----LS---DEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHHHHcCCC-----CC---HHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 9999999998754321 22 3456667777743 333333444433
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.76 E-value=1.2e-08 Score=101.80 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=83.3
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH------
Q 047642 163 VVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI------ 236 (718)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~------ 236 (718)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+. .+..-...+|+...+.... ..+..++
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence 6899999999999987753 468899999999999999999994 3222123445444344322 2222221
Q ss_pred ----HHhc----CCcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCChh----h----hhHHHhhC---CCCC
Q 047642 237 ----KSFQ----KPKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHKS----A----WESLRRAF---PDNG 295 (718)
Q Consensus 237 ----~~l~----~~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~~----~----~~~l~~~l---~~~~ 295 (718)
..+. .....................+.+.+. +++++||+||+.... . ...+...+ ....
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1111 100000000000111122223333332 345999999987554 1 12233222 2233
Q ss_pred CCcEEEEEecchhhhhh-------cCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 296 NGSRIVITTRNEPVAMI-------TDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 296 ~gsriivTTR~~~v~~~-------~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+.+.|+++|. ..+... .......+.+++|+.+++++++...+
T Consensus 156 ~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 156 NVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp TEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred CceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence 4444444444 433322 11112459999999999999999864
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.74 E-value=1.1e-06 Score=89.91 Aligned_cols=188 Identities=23% Similarity=0.162 Sum_probs=103.7
Q ss_pred cHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccch
Q 047642 169 NTKMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDL 247 (718)
Q Consensus 169 ~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~ 247 (718)
..+++...+... ..+..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..+...++.+....
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~- 102 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR- 102 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-
Confidence 334455544332 223458999999999999999999985331 121 12233 3345677888888888886542210
Q ss_pred HHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCChh--hhhHHHhhCCC---CCCCcEEEEEecchhhhhhcCC------
Q 047642 248 ELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHKS--AWESLRRAFPD---NGNGSRIVITTRNEPVAMITDE------ 315 (718)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~~--~~~~l~~~l~~---~~~gsriivTTR~~~v~~~~~~------ 315 (718)
+. ......+...+.... .+++.+||+||++... .++.+...... ......|++|.... .......
T Consensus 103 ~~--~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l 179 (269)
T TIGR03015 103 DK--AALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQL 179 (269)
T ss_pred CH--HHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHH
Confidence 00 000122233333322 6788999999998753 45555432221 12223445555432 2211110
Q ss_pred ---CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 316 ---KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 316 ---~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
....+++++++.+|..+++...+....... ...-..+....|++.|++
T Consensus 180 ~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~----~~~~~~~~~~~i~~~s~G 230 (269)
T TIGR03015 180 RQRIIASCHLGPLDREETREYIEHRLERAGNRD----APVFSEGAFDAIHRFSRG 230 (269)
T ss_pred HhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCC----CCCcCHHHHHHHHHHcCC
Confidence 124578999999999998887654322110 111123566777777753
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=2.7e-08 Score=113.18 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=110.0
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
+...+.|.+..|.+..++ ...++|+.|.+.+|.... +|.. ..+|+.|+|++|.|+ . +|.. .
T Consensus 301 p~~L~~LdLS~N~L~~Lp--~lp~~L~~L~Ls~N~L~~-----LP~l---p~~Lq~LdLS~N~Ls---~---LP~l---p 361 (788)
T PRK15387 301 PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTS-----LPTL---PSGLQELSVSDNQLA---S---LPTL---P 361 (788)
T ss_pred ccccceeECCCCccccCC--CCcccccccccccCcccc-----cccc---ccccceEecCCCccC---C---CCCC---C
Confidence 345667777655554421 134456666666655421 2221 246888888888888 5 6643 2
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceec
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
.+|+.|++++|.|..+|... .+|+.|++++|.++.+|... ++|+.|+++ ..+|.. ..+|+.|++.+|
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML---PSGLLSLSVYRN 432 (788)
T ss_pred cccceehhhccccccCcccc---cccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcc---hhhhhhhhhccC
Confidence 46777888888888888643 57899999999999988643 578888883 223432 346788888888
Q ss_pred c-ccchHHhcccCCCCeEEEeec--cccHHHHhhc
Q 047642 664 Q-QWDAVDARNLINLQELEIREI--PYTNMNFILQ 695 (718)
Q Consensus 664 ~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~ 695 (718)
. ...|..++++++|+.|++++| .+..+..+..
T Consensus 433 qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 7 778999999999999999999 5555666643
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=1.2e-09 Score=109.52 Aligned_cols=103 Identities=19% Similarity=0.259 Sum_probs=55.7
Q ss_pred cccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeecc-CCccccccc
Q 047642 528 HFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKC-NSLVEFPRS 606 (718)
Q Consensus 528 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~-~~l~~lp~~ 606 (718)
...+....+.+..|... ..++..|+.+++||.|||++|+|+ .+ -|..|..|..|..|-+-+ |+|+.+|..
T Consensus 64 ~LP~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is---~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNIS---FI--APDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred cCCCcceEEEeccCCcc----cCChhhccchhhhceecccccchh---hc--ChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 33445555556555542 244566666666666666666666 32 456666666665555544 666666654
Q ss_pred -ccccCCCcEEEecCccccccCh-hhcccccccee
Q 047642 607 -IGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHL 639 (718)
Q Consensus 607 -i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L 639 (718)
+++|..|+.|.+.-|.+.-++. .+..|++|..|
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 3555555555555554443322 23444444333
No 38
>PF13173 AAA_14: AAA domain
Probab=98.67 E-value=9.1e-08 Score=85.55 Aligned_cols=120 Identities=21% Similarity=0.278 Sum_probs=80.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
.+++.|.|+-|+|||||+++++.+.. ....+++++......... ...+ ....+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~----------------------~~~~-~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL----------------------ADPD-LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH----------------------hhhh-hHHHHH
Confidence 36899999999999999999998522 234456665443321100 0000 223333
Q ss_pred HHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhh-----cCCCCceeeccCCCHHh
Q 047642 264 EFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMI-----TDEKNFVYKLRFLNQEE 329 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~-----~~~~~~~~~l~~L~~~e 329 (718)
+....++.+|+||++.....|......+.+..+..+|++|+.+...... ..+....+++.||+-.|
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 3344477889999999988888887777766667899999998776533 12223568899998776
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.5e-07 Score=95.70 Aligned_cols=142 Identities=26% Similarity=0.378 Sum_probs=89.8
Q ss_pred CCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
....+++|-+..+.++++ .+.+.-..+||++|+||||||+.+.. .....|. .++..++-.+-++.+++
T Consensus 27 vGQ~HLlg~~~~lrr~v~-----~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE-----AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREIIE 94 (436)
T ss_pred cChHhhhCCCchHHHHHh-----cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHHH
Confidence 444556666666666553 33466778999999999999999998 3555543 33333322222222222
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEE--Eecchhh--hh
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVI--TTRNEPV--AM 311 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriiv--TTR~~~v--~~ 311 (718)
.. -+....+++.+|++|.|.. ..+-+.+ ||.-.+|.-|+| ||-++.- -.
T Consensus 95 ~a----------------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 95 EA----------------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HH----------------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecH
Confidence 21 1223358999999999974 4454544 555567777777 6666532 11
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
..-....++++++|+.+|-.+++.+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHH
Confidence 2222337899999999999999887
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=6.5e-09 Score=100.59 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=79.0
Q ss_pred cccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeecccCccc----CCCcccccccccee
Q 047642 587 LIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIARPLGHLQ----VSTLTNLQTLKYVN 662 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~p~~----~~~l~~L~~L~~~~ 662 (718)
...|..||||+|.|+.+.+++.-++.++.|++|+|.|..+-. +..|++|++|+++...... -.+|.+.++|.+..
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 445666777777777777666666677777777776666554 6666677777663222111 23455566666666
Q ss_pred ccccchHHhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 663 FQQWDAVDARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 663 ~~~~~~~~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
|.....+.++.|-+|..|++++| ...-..+|++|+.|+.|.|.+|-..+
T Consensus 362 N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 362 NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 65555666777777777788777 23334567788888888887776533
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.59 E-value=2e-08 Score=108.92 Aligned_cols=151 Identities=25% Similarity=0.247 Sum_probs=131.7
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcc-cccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI-HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKL 633 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L 633 (718)
+..++.+..|++.++.++ + +|+.++.+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.++|...+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i~---~---i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT---D---IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCCcccc---c---CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 445588999999999999 7 888888885 999999999999999988999999999999999999999988899
Q ss_pred cccceeeec----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeC
Q 047642 634 HQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 634 ~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~ 707 (718)
++|+.|+++ ..+|..+..+..|++|.+..+. ...+..+++++++..|.+.+| ...++..++.+++|+.|++++|
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 999999993 4556666677779999999885 778888999999999998888 5555888999999999999997
Q ss_pred CCCC
Q 047642 708 TAFN 711 (718)
Q Consensus 708 ~~~~ 711 (718)
....
T Consensus 266 ~i~~ 269 (394)
T COG4886 266 QISS 269 (394)
T ss_pred cccc
Confidence 6543
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.58 E-value=5e-09 Score=105.22 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=76.9
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecC-Ccccccccccccc-h
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLED-TRIEHSGKVLRLT-D 582 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~l~~~p-~ 582 (718)
.|...-.+.+..|.+..++...| +++||.|.++.|.... .-|+.|.+++.|..|-+-+ |.|+ . +| .
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~----I~p~AF~GL~~l~~Lvlyg~NkI~---~---l~k~ 134 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF----IAPDAFKGLASLLSLVLYGNNKIT---D---LPKG 134 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhh----cChHhhhhhHhhhHHHhhcCCchh---h---hhhh
Confidence 56667777788777777666666 7788888888777532 3356777777766665444 7777 5 66 3
Q ss_pred hhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccCh-hhccccccceee
Q 047642 583 SIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLI 640 (718)
Q Consensus 583 ~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~ 640 (718)
.|++|..|+-|.+.-|++..++.. +..|++|..|.+-.|.+..++. .+..+..++++.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 466666666666666666544433 4555556555555555555554 344444444443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=4.1e-08 Score=114.09 Aligned_cols=144 Identities=24% Similarity=0.248 Sum_probs=109.8
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc--ccccccccccch-hhhhcccccEEeecc-CCcccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR--IEHSGKVLRLTD-SIGKLIHLRYFGFKC-NSLVEFPR 605 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~~~~l~~~p~-~i~~l~~L~~L~l~~-~~l~~lp~ 605 (718)
....|...+.++.... .+.. ...+.|++|-+.+|. +. . ++. .|..++.|++|||++ ..+.+||.
T Consensus 522 ~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~---~---is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLL---E---ISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred hhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhh---h---cCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 5567777777766422 2222 233468888888875 44 3 554 478899999999995 56889999
Q ss_pred cccccCCCcEEEecCccccccChhhccccccceeeec-----ccCcccCCCccccccccceecc----ccchHHhcccCC
Q 047642 606 SIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ----QWDAVDARNLIN 676 (718)
Q Consensus 606 ~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~----~~~~~~l~~l~~ 676 (718)
+|++|.+|++|+++++.++.+|.++++|.+|.||++. ..+|..+..|++|++|.+.... .....++.+|.+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 9999999999999999999999999999999999982 2334445559999999887664 456677778888
Q ss_pred CCeEEEeec
Q 047642 677 LQELEIREI 685 (718)
Q Consensus 677 L~~L~l~~~ 685 (718)
|+.|.+...
T Consensus 670 L~~ls~~~~ 678 (889)
T KOG4658|consen 670 LENLSITIS 678 (889)
T ss_pred hhhheeecc
Confidence 888877655
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=2.2e-07 Score=83.52 Aligned_cols=115 Identities=25% Similarity=0.345 Sum_probs=78.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc---CCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVK---GGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLEL 260 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 260 (718)
.+++.|+|.+|+|||++++.+.++.... ..-...+|+.+....+...+...++.+++..... ..+.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------RQTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS------TS-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc------cCCHHHHHH
Confidence 4689999999999999999999852110 0134467999988889999999999999875442 234566777
Q ss_pred HHHHHhcCc-eEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecc
Q 047642 261 HLYEFLEGR-RYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRN 306 (718)
Q Consensus 261 ~l~~~L~~k-~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~ 306 (718)
.+.+.+... ..+||+||++.. +.++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777777654 459999999765 23455544443 667778877664
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=2.5e-07 Score=91.81 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=62.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC--CCHHHHHHHHHHHhcCCcccchHHhhhc-CHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE--YTTRDLLQKTIKSFQKPKIEDLELMERM-TEEDLEL 260 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~l~~i~~~l~~~~~~~~~~~~~~-~~~~l~~ 260 (718)
-..++|+|++|+|||||++++|++.... +|+..+|+.++.+ ++..++++.+...+-...... +..... -......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHHHHHH
Confidence 3478999999999999999999975444 8999999998887 789999998833222111100 001110 1112222
Q ss_pred HHHHH-hcCceEEEEEecCCC
Q 047642 261 HLYEF-LEGRRYLVVVDDIWH 280 (718)
Q Consensus 261 ~l~~~-L~~k~~LlVLDdv~~ 280 (718)
..... -.++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 258999999999964
No 46
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.50 E-value=3.4e-06 Score=94.34 Aligned_cols=176 Identities=13% Similarity=0.013 Sum_probs=107.0
Q ss_pred CCCCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCccc---cCCCc--eEEEEEecCCCCHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNSTDV---KGGFD--CRAWVCVTQEYTTR 229 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~ 229 (718)
..+..+.||++++++|...|... .....++-|+|++|+|||+.++.|.+.... +...+ ..++|+...-.+..
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 33467999999999999888652 223357889999999999999999874211 11222 25667666667788
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhc---CceEEEEEecCCChh--hhhHHHhhCCC-CCCCcEEEE-
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLE---GRRYLVVVDDIWHKS--AWESLRRAFPD-NGNGSRIVI- 302 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~---~k~~LlVLDdv~~~~--~~~~l~~~l~~-~~~gsriiv- 302 (718)
.++..|..++...... ......+....+...+. +...+||||+|+... .-+.|...+.+ ...+++|+|
T Consensus 832 sIYqvI~qqL~g~~P~-----~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPP-----NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred HHHHHHHHHHcCCCCC-----ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 8899999888543221 11222333444444442 234589999997532 11222222221 124566654
Q ss_pred -Eecchhh--------hhhcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 303 -TTRNEPV--------AMITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 303 -TTR~~~v--------~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
+|.+.+. ...+.. ..+..++.+.++-.+++..++-.
T Consensus 907 GISNdlDLperLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred EecCchhcchhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHHh
Confidence 3332222 122221 23667999999999999988753
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.1e-06 Score=80.56 Aligned_cols=123 Identities=19% Similarity=0.085 Sum_probs=70.6
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCc
Q 047642 164 VGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPK 243 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~ 243 (718)
+|++..++.+...+.... ...+.|+|.+|+||||+|+.+++... ..-...+++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 367888888888876543 45888999999999999999999532 222335565544433222111100000
Q ss_pred ccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hh---hhHHHhhCCCC---CCCcEEEEEecchh
Q 047642 244 IEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SA---WESLRRAFPDN---GNGSRIVITTRNEP 308 (718)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~---~~~l~~~l~~~---~~gsriivTTR~~~ 308 (718)
............++.+||+||++.. .. +..+...+... ..+.+||+||....
T Consensus 72 -------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999853 22 22222333221 35788888887554
No 48
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.48 E-value=2.3e-07 Score=95.81 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=65.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC--CHHHHHHHHHHHhcCCcccchHH
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY--TTRDLLQKTIKSFQKPKIEDLEL 249 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~l~~i~~~l~~~~~~~~~~ 249 (718)
++++.+..-. .-+..+|+|++|+||||||++||++.... +|+.++||.+++.. ...++++.+...+-.......+.
T Consensus 158 rvID~l~PIG-kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIG-KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccc-cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3444444322 23467899999999999999999975444 89999999999997 66777777753221111111011
Q ss_pred hhhcCHHHHHHHHHHH-hcCceEEEEEecCCC
Q 047642 250 MERMTEEDLELHLYEF-LEGRRYLVVVDDIWH 280 (718)
Q Consensus 250 ~~~~~~~~l~~~l~~~-L~~k~~LlVLDdv~~ 280 (718)
....-.......-... -.+++++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1100011111111111 367999999999964
No 49
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.48 E-value=2e-07 Score=86.94 Aligned_cols=77 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccc-cccCCCcEEEecCccccccCh--hhcccc
Q 047642 558 LRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLPS--QISKLH 634 (718)
Q Consensus 558 l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp~--~i~~L~ 634 (718)
+.+|++|+|++|.++ . ++ .+..+++|+.|++++|+|+.+++.+ ..+++|+.|++++|+|.++-. .+..++
T Consensus 41 l~~L~~L~Ls~N~I~---~---l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~ 113 (175)
T PF14580_consen 41 LDKLEVLDLSNNQIT---K---LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP 113 (175)
T ss_dssp -TT--EEE-TTS--S--------T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred hcCCCEEECCCCCCc---c---cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence 344555555555554 3 22 2444555555555555555554333 234555555555554443321 234444
Q ss_pred ccceeee
Q 047642 635 QLRHLIA 641 (718)
Q Consensus 635 ~L~~L~l 641 (718)
+|+.|++
T Consensus 114 ~L~~L~L 120 (175)
T PF14580_consen 114 KLRVLSL 120 (175)
T ss_dssp T--EEE-
T ss_pred Ccceeec
Confidence 5555544
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.45 E-value=1e-06 Score=95.48 Aligned_cols=143 Identities=23% Similarity=0.288 Sum_probs=84.8
Q ss_pred CceeeccccHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENTKM---LIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
.++||.+..+.. +..++.... ...+.|+|++|+||||||+.+++. .... |+.++.......-++.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHHHHHH
Confidence 357887776555 666665443 557888999999999999999984 3333 3333322111111112111
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHH-hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEE--Eecchh--hh
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEF-LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVI--TTRNEP--VA 310 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriiv--TTR~~~--v~ 310 (718)
..... ..+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.. +.
T Consensus 83 -----------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 83 -----------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVN 136 (413)
T ss_pred -----------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhcc
Confidence 11111 2457889999999864 45556655554 2455555 344332 11
Q ss_pred hhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 311 MITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.........+.+.+++.++.++++.+.+
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 1111222678999999999999998754
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=2.4e-08 Score=96.75 Aligned_cols=122 Identities=21% Similarity=0.181 Sum_probs=81.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+..|..+.++.|.. ..+.....-.+.+++|++++|.+. . + .++..|.+|..||||+|.++++-..-.+
T Consensus 283 Wq~LtelDLS~N~I-----~~iDESvKL~Pkir~L~lS~N~i~---~---v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLI-----TQIDESVKLAPKLRRLILSQNRIR---T---V-QNLAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred Hhhhhhccccccch-----hhhhhhhhhccceeEEecccccee---e---e-hhhhhcccceEeecccchhHhhhhhHhh
Confidence 55666677766654 234455556677777777777776 3 2 3467777777777777777777665566
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeec-cc-----CcccCCCccccccccceecc
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-PL-----GHLQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-~~-----~p~~~~~l~~L~~L~~~~~~ 664 (718)
|.|.++|.|++|.|.++. ++++|.+|.+|+++ .. -..+||+|+.|++|.+.+|.
T Consensus 351 LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777777777777776664 46777777777772 11 13457777777777777665
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.9e-07 Score=70.21 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=43.9
Q ss_pred ceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSC 623 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i 623 (718)
++|++|++++|.++ . +| ..+..+++|++|++++|.++.+|+ .+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~---~---i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT---E---IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES---E---ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC---c---cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35777888888777 5 55 466778888888888888887765 457788888888887754
No 53
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=9.2e-07 Score=84.76 Aligned_cols=50 Identities=30% Similarity=0.337 Sum_probs=33.7
Q ss_pred ceeeccccHHHHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHhcCcccc
Q 047642 162 QVVGFEENTKMLIKQLLK-DEQQRFVISILGMGGLGKTTLARKLVNSTDVK 211 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 211 (718)
.||||+++++++...|.. .....+.+.|+|.+|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 389999999999999942 23457899999999999999999999854333
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=9.7e-08 Score=97.48 Aligned_cols=170 Identities=17% Similarity=0.197 Sum_probs=83.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch--hhhhcccccEEeeccCCcc--cccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD--SIGKLIHLRYFGFKCNSLV--EFPR 605 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~--~i~~l~~L~~L~l~~~~l~--~lp~ 605 (718)
+++++.|.++.|-+.. |..+-.+...|++|+.|+|+.|.+. . .-+ .-..+++|+.|.|+.|.++ .+-.
T Consensus 145 ~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~Nrl~---~---~~~s~~~~~l~~lK~L~l~~CGls~k~V~~ 216 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSNRLS---N---FISSNTTLLLSHLKQLVLNSCGLSWKDVQW 216 (505)
T ss_pred CCcceeecchhhhHHh--HHHHHHHHHhcccchhccccccccc---C---CccccchhhhhhhheEEeccCCCCHHHHHH
Confidence 6667777766665432 4444555666777777777777654 1 111 1235566666666666665 2222
Q ss_pred cccccCCCcEEEecCcc-ccccChhhccccccceeeec-c---cCc--ccCCCccccccccceecc---ccchH-----H
Q 047642 606 SIGNLQCLKTMVASGNS-CWKLPSQISKLHQLRHLIAR-P---LGH--LQVSTLTNLQTLKYVNFQ---QWDAV-----D 670 (718)
Q Consensus 606 ~i~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~-~---~~p--~~~~~l~~L~~L~~~~~~---~~~~~-----~ 670 (718)
-...+++|+.|+|.+|. +..--.....++.|+.|+++ . ..+ .-++.|+.|..|.+..++ ...|. -
T Consensus 217 ~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k 296 (505)
T KOG3207|consen 217 ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDK 296 (505)
T ss_pred HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhh
Confidence 22334556666665552 22112223334455555551 1 111 224555555555555544 11111 1
Q ss_pred hcccCCCCeEEEeec-c--ccHHHHhhccCCCCeEEEeeC
Q 047642 671 ARNLINLQELEIREI-P--YTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 671 l~~l~~L~~L~l~~~-~--~~~~~~l~~l~~L~~L~l~~~ 707 (718)
...+++|+.|++..| . -.....+..+++|+.|.+.+|
T Consensus 297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 344556666666666 1 122233444455555555444
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=5.1e-07 Score=102.79 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=68.5
Q ss_pred eEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcc-cccccccccCCCcEEEecCcccc-ccChhhccccccc
Q 047642 560 FLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCW-KLPSQISKLHQLR 637 (718)
Q Consensus 560 ~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~ 637 (718)
.++.|+|++|.+.+ . +|..++.|++|++|+|++|.+. .+|..++++++|+.|+|++|.++ .+|..+++|++|+
T Consensus 419 ~v~~L~L~~n~L~g--~---ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG--F---IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc--c---CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 36777777777775 5 7777778888888888877776 67777777888888888877776 6777777777777
Q ss_pred eeee-----cccCcccCCCc-cccccccceec
Q 047642 638 HLIA-----RPLGHLQVSTL-TNLQTLKYVNF 663 (718)
Q Consensus 638 ~L~l-----~~~~p~~~~~l-~~L~~L~~~~~ 663 (718)
+|++ .+.+|..++.+ .++..+.+.+|
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCC
Confidence 7776 24555555432 23444444444
No 56
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=9.7e-08 Score=97.50 Aligned_cols=174 Identities=18% Similarity=0.142 Sum_probs=121.1
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccc--
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSI-- 607 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-- 607 (718)
+++|+.+.+.+...... ........|++++.|||+.|-+. +...+-+-+..|++|+.|+|+.|++...-.+.
T Consensus 120 ~kkL~~IsLdn~~V~~~---~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDA---GIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHhhhheeecCcccccc---chhhhhhhCCcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 45556555555443221 11135677999999999999887 32123355678999999999999987554442
Q ss_pred cccCCCcEEEecCcccc--ccChhhccccccceeee--c-ccCcc--cCCCccccccccceecc-ccc--hHHhcccCCC
Q 047642 608 GNLQCLKTMVASGNSCW--KLPSQISKLHQLRHLIA--R-PLGHL--QVSTLTNLQTLKYVNFQ-QWD--AVDARNLINL 677 (718)
Q Consensus 608 ~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l--~-~~~p~--~~~~l~~L~~L~~~~~~-~~~--~~~l~~l~~L 677 (718)
..+.+|+.|.|++|.++ ++-......++|..|++ + ..... ....++.|++|++.++. ... ..-.+.++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 45789999999999887 33333456788998988 2 11111 23457788999998887 222 3567889999
Q ss_pred CeEEEeec---cccHHHH-----hhccCCCCeEEEeeCCC
Q 047642 678 QELEIREI---PYTNMNF-----ILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 678 ~~L~l~~~---~~~~~~~-----l~~l~~L~~L~l~~~~~ 709 (718)
+.|+++.+ ....|+. ...+++|++|++..|+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 99999988 3333333 45678999999999876
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.30 E-value=3.2e-06 Score=84.47 Aligned_cols=126 Identities=22% Similarity=0.276 Sum_probs=83.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
...-+.+||++|+||||||+.+.+.. +.+- ..||..|....-..-.+.|+++...
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~ts--k~~S--yrfvelSAt~a~t~dvR~ife~aq~--------------------- 215 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTS--KKHS--YRFVELSATNAKTNDVRDIFEQAQN--------------------- 215 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhc--CCCc--eEEEEEeccccchHHHHHHHHHHHH---------------------
Confidence 46677899999999999999999853 3321 5577777655444444555444321
Q ss_pred HHHhcCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEE--Eecchhhh--hhcCCCCceeeccCCCHHhHHHHHHh
Q 047642 263 YEFLEGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVI--TTRNEPVA--MITDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriiv--TTR~~~v~--~~~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
...+.++|.+|.+|.|.. ..+-+. +||.-.+|+-++| ||-+...- ...-....++.++.|+.++-..++.+
T Consensus 216 ~~~l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 216 EKSLTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHhhhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 123467899999999964 333333 4676677887776 66665421 11111226889999999998888776
No 58
>PTZ00202 tuzin; Provisional
Probab=98.30 E-value=7.2e-06 Score=85.24 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=99.9
Q ss_pred CCCCCCceeeccccHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHH
Q 047642 156 SNAGNEQVVGFEENTKMLIKQLLKDE-QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 234 (718)
.+.+...|+||+.++..+...|...+ ..++++.|+|++|+|||||++.+... .. + .+++.... +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEECCC--CHHHHHHH
Confidence 34556789999999999999997543 24569999999999999999999973 22 2 23333333 67999999
Q ss_pred HHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-----c-CceEEEEEecCC--Chh-hhhHHHhhCCCCCCCcEEEEEec
Q 047642 235 TIKSFQKPKIEDLELMERMTEEDLELHLYEFL-----E-GRRYLVVVDDIW--HKS-AWESLRRAFPDNGNGSRIVITTR 305 (718)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~k~~LlVLDdv~--~~~-~~~~l~~~l~~~~~gsriivTTR 305 (718)
++.+|+.+... ...++...+.+.+ . +++.+||+-==. +.. .+.+. -.|.....=|.|++---
T Consensus 329 LL~ALGV~p~~--------~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evp 399 (550)
T PTZ00202 329 VVKALGVPNVE--------ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVP 399 (550)
T ss_pred HHHHcCCCCcc--------cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeeh
Confidence 99999963221 1123333333332 3 677777774221 111 12221 12233334566776543
Q ss_pred chhhhhh--cCCCCceeeccCCCHHhHHHHHHh
Q 047642 306 NEPVAMI--TDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 306 ~~~v~~~--~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
-+.+... .-..-..|.++.++.++|.+.-.+
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 3332111 111225788999999998876554
No 59
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=8e-07 Score=101.20 Aligned_cols=100 Identities=22% Similarity=0.347 Sum_probs=85.0
Q ss_pred CcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcc-cccccccccC
Q 047642 533 LRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLV-EFPRSIGNLQ 611 (718)
Q Consensus 533 l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~ 611 (718)
+..|.+.++.... .+|..+..+++|+.|+|++|.+.+ . +|..++.+++|++|+|++|+++ .+|..+++|+
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g--~---iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRG--N---IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccC--c---CChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 5677777766532 456778899999999999999987 7 9999999999999999999998 7899999999
Q ss_pred CCcEEEecCcccc-ccChhhccc-cccceeee
Q 047642 612 CLKTMVASGNSCW-KLPSQISKL-HQLRHLIA 641 (718)
Q Consensus 612 ~L~~L~l~~~~i~-~lp~~i~~L-~~L~~L~l 641 (718)
+|+.|+|++|.++ .+|..++.+ .++..+++
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 9999999999888 899988764 45666665
No 60
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=3e-06 Score=90.36 Aligned_cols=157 Identities=14% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCCCceeeccccHHHHHHHHhcC--C---------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKD--E---------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
....++.|+++.+++|.+.+... . ..++-+.++|++|+|||++|+++++. ....| +.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~--- 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV--- 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc---
Confidence 33457899999999998877432 1 12456899999999999999999994 44343 2221
Q ss_pred CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh-------------h---hhhHHHh
Q 047642 227 TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK-------------S---AWESLRR 289 (718)
Q Consensus 227 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~-------------~---~~~~l~~ 289 (718)
...+. ....+. .......+.+.. ...+.+|+|||++.. . .+..+..
T Consensus 189 -~~~l~----~~~~g~------------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 189 -GSELV----RKYIGE------------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred -hHHHH----HHhhhH------------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH
Confidence 11111 110000 011111122222 345689999998743 1 1223333
Q ss_pred hCCC--CCCCcEEEEEecchhhhhh-c---CCCCceeeccCCCHHhHHHHHHhhhCCC
Q 047642 290 AFPD--NGNGSRIVITTRNEPVAMI-T---DEKNFVYKLRFLNQEESWKLFCKKAFPD 341 (718)
Q Consensus 290 ~l~~--~~~gsriivTTR~~~v~~~-~---~~~~~~~~l~~L~~~es~~Lf~~~af~~ 341 (718)
.+.. ...+.+||.||........ . +.....+++...+.++..++|..++...
T Consensus 252 ~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 252 ELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM 309 (364)
T ss_pred HhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC
Confidence 3321 1346778888875532211 1 1112578999999999999999887554
No 61
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=3.4e-05 Score=86.16 Aligned_cols=192 Identities=11% Similarity=0.154 Sum_probs=104.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.......+.. ..+..=...+.|...-
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHhcCC
Confidence 3468999999999999887653 3456779999999999999988874221111100 0000000111111000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~ 312 (718)
......++.......+++...+... ..++.-++|||+++.. ..++.|+..+..-....++|+||++.+ +..-
T Consensus 87 -h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 87 -FVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred -CceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 0000000000011122222222221 1244558889999865 458888877765556778777777654 3222
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREE 368 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~ 368 (718)
+......+.++.++.++..+.+.+.+-..... . -.+....|++.+++.
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-----i---d~eAL~lIA~~A~Gs 213 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIA-----F---EPQALRLLARAAQGS 213 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-----C---CHHHHHHHHHHcCCC
Confidence 22222679999999999998888765432211 1 123445566666543
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.27 E-value=6.5e-06 Score=87.23 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=90.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-CCc-eEEEEEecCCCCHHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-GFD-CRAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
..++|++..++.+..++..+. ...+.++|++|+||||+|+.+.+. +.. .+. ..+.++++.-. ......
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~~~------~~~~~~ 84 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVADFF------DQGKKY 84 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhhhh------hcchhh
Confidence 468899999999988886543 345789999999999999999884 322 222 12344333211 000000
Q ss_pred hcC-Ccccc-h-H--HhhhcCHHHHHHHHHH---Hh--cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc
Q 047642 239 FQK-PKIED-L-E--LMERMTEEDLELHLYE---FL--EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN 306 (718)
Q Consensus 239 l~~-~~~~~-~-~--~~~~~~~~~l~~~l~~---~L--~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~ 306 (718)
+.. +.... . . .......+.....+.. .. .+.+-+||+||+... ...+.+...+......+++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 000 00000 0 0 0000001111111111 11 234458999999754 2344555555444455778877754
Q ss_pred h-hhhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 307 E-PVAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 307 ~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
. .+..........+++.+++.++..+.+...+-
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~ 198 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAE 198 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 3 22222222235688899999998888877654
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=9.5e-07 Score=61.77 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=30.9
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccCh
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS 628 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~ 628 (718)
++|++|++++|+|+.+|+.+++|++|++|++++|.++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888888888778888888888888888776653
No 64
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.5e-05 Score=83.11 Aligned_cols=152 Identities=18% Similarity=0.287 Sum_probs=97.5
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc----cccCCCceEEEEEe-cCCCCHHHHHHHHH
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNST----DVKGGFDCRAWVCV-TQEYTTRDLLQKTI 236 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~l~~i~ 236 (718)
+++|-+.-++.+..++..+. -.+...++|+.|+||||+|+.++... ....|.|...|... +.....+. .+++.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 57888888888888886553 35688999999999999999988731 12345665556442 22222222 22233
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCC--ChhhhhHHHhhCCCCCCCcEEEEEecchhhh-hhc
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIW--HKSAWESLRRAFPDNGNGSRIVITTRNEPVA-MIT 313 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gsriivTTR~~~v~-~~~ 313 (718)
+.+... -..+++-++|+|+++ +.+.++.+...+..-..++.+|++|.+.+.. ...
T Consensus 83 ~~~~~~----------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 83 EEVNKK----------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHhcC----------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 322211 012344455566654 5667999999998777889998888765422 111
Q ss_pred CCCCceeeccCCCHHhHHHHHHhh
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
......+++.+++.++....+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHH
Confidence 222367899999999987776544
No 65
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.22 E-value=3.7e-06 Score=87.49 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=63.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC--CCHHHHHHHHHHHhcCCcccchHHhhhcC-HHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE--YTTRDLLQKTIKSFQKPKIEDLELMERMT-EEDLEL 260 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~l~~i~~~l~~~~~~~~~~~~~~~-~~~l~~ 260 (718)
-..++|+|++|+|||||++.+++... .++|+..+||.+.++ .++.++++.+...+-.......+. .... .+....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~-~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAS-RHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChH-HHHHHHHHHHH
Confidence 35789999999999999999999633 337999999999876 788888888854433222111011 1101 111222
Q ss_pred HHHHH-hcCceEEEEEecCCCh
Q 047642 261 HLYEF-LEGRRYLVVVDDIWHK 281 (718)
Q Consensus 261 ~l~~~-L~~k~~LlVLDdv~~~ 281 (718)
..... -.+++++|++|++...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 22222 3689999999999643
No 66
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.21 E-value=9.1e-06 Score=91.88 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=105.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ceEEEEEecCC---CCHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DCRAWVCVTQE---YTTRDLLQK 234 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~l~~ 234 (718)
+.++|.+..++.+.+.+.... ...+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 468999999999888775433 4579999999999999999998854333333 12346655432 122222111
Q ss_pred H---------------HHHhcCCc------------ccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhh
Q 047642 235 T---------------IKSFQKPK------------IEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWE 285 (718)
Q Consensus 235 i---------------~~~l~~~~------------~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~ 285 (718)
+ +...+... .--+++...++ ...+..+.+.+.++++.++.|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 11111000 00001122222 23567788888889999997777654 4588
Q ss_pred HHHhhCCCCCCCcEEEE--Eecchhh-hhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 286 SLRRAFPDNGNGSRIVI--TTRNEPV-AMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 286 ~l~~~l~~~~~gsriiv--TTR~~~v-~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.+...+....+...|+| ||++... ..........+.+.+++.+|.++++.+.+-
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 88777766665555655 5664432 111111224678889999999999987653
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.1e-05 Score=83.62 Aligned_cols=169 Identities=15% Similarity=0.283 Sum_probs=93.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.......... .....-..-.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcCCC
Confidence 468999999999988887653 3567899999999999999999884211111100 00000000011100000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCChh--hhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHKS--AWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
.... ..........++.. .+.+.+ .+++-++|+|+++... .++.+...+.......++|++|.+. .+...
T Consensus 88 ~d~~-~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLI-EIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceE-EecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 0000 00000001112211 111221 2455699999998654 5777777777655667777766543 33322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.......+++.+++.++..+.+...+-
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~ 192 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILI 192 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 222236789999999998887776553
No 68
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.7e-05 Score=79.02 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=111.4
Q ss_pred CceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc--eEEEEEecCCCCHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD--CRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~l~~i~ 236 (718)
..+.+|+++++++...|... +..+.-+.|+|.+|+|||+.++.+... ++.... ..++|+.-...+...++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34899999999999888653 222334899999999999999999995 333321 268888888999999999999
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHh--cCceEEEEEecCCChhhh--hHHHhhCCCCC-CCcEEEE--Eecchhh
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFL--EGRRYLVVVDDIWHKSAW--ESLRRAFPDNG-NGSRIVI--TTRNEPV 309 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVLDdv~~~~~~--~~l~~~l~~~~-~gsriiv--TTR~~~v 309 (718)
.+++.... ......+....+.+.+ .++.++||||+++....- +.+-..+.... ..++|+| .+-+...
T Consensus 95 ~~~~~~p~------~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 95 NKLGKVPL------TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHcCCCCC------CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 99973211 2233455556666666 458899999999854221 22222222222 2455533 3443333
Q ss_pred hhhcCCC------CceeeccCCCHHhHHHHHHhhhC
Q 047642 310 AMITDEK------NFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 310 ~~~~~~~------~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+... ...+..++-+.+|-.+.+..++-
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 3332211 13367788888888888887653
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=8.7e-06 Score=92.94 Aligned_cols=143 Identities=23% Similarity=0.326 Sum_probs=82.6
Q ss_pred CceeeccccHH---HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENTK---MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
.+++|.+..+. .+.+.+..+ ....+.++|++|+||||||+.+++. ...+|. .++..... ..+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~~---i~d--- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLAG---VKD--- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhhh---hHH---
Confidence 45889888774 344555443 3556789999999999999999984 444441 11110000 000
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHh--cCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEE--ecchh--h
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFL--EGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVIT--TRNEP--V 309 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivT--TR~~~--v 309 (718)
..+........+ .+++.+|||||++. ..+++.+...+. .|+.++|+ |.+.. +
T Consensus 93 -----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 -----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred -----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 011111111111 24677999999974 445666665443 35555553 34331 2
Q ss_pred hhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 310 AMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..........+.+++|+.++...++.+.+
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 11111122578999999999999888755
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.17 E-value=7.4e-06 Score=81.35 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=78.2
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccc
Q 047642 167 EENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIED 246 (718)
Q Consensus 167 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~ 246 (718)
+..++.+..++.. .....|.|+|++|+|||+||+.+++. ........++++++.-.+ ..
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------hH-----------
Confidence 3355566665543 23568899999999999999999984 222233344554332110 00
Q ss_pred hHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh---hh-hHHHhhCCC-CCCCcEEEEEecchh---------hhhh
Q 047642 247 LELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS---AW-ESLRRAFPD-NGNGSRIVITTRNEP---------VAMI 312 (718)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~---~~-~~l~~~l~~-~~~gsriivTTR~~~---------v~~~ 312 (718)
. .+...+.+ .-+|||||++... .| +.+...+.. ...+.++|+||+... +...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 2389999998543 33 334443332 123457899888532 1122
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+.. ...+++.+++.++...++...+
T Consensus 148 ~~~-~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 148 LAW-GLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred Hhc-CeeEecCCCCHHHHHHHHHHHH
Confidence 221 2578999999999888887654
No 71
>PRK08727 hypothetical protein; Validated
Probab=98.17 E-value=1.4e-05 Score=79.38 Aligned_cols=141 Identities=19% Similarity=0.136 Sum_probs=82.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...+.|+|..|+|||+|++++++. ...+.....|+++.+ ....+. +. +
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~--------------------~~---~- 88 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR--------------------DA---L- 88 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH--------------------HH---H-
Confidence 346999999999999999999884 333333456665322 111000 00 1
Q ss_pred HHhcCceEEEEEecCCCh---hhhhH-HHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceeeccCCCHHh
Q 047642 264 EFLEGRRYLVVVDDIWHK---SAWES-LRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKNFVYKLRFLNQEE 329 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~~~~~l~~L~~~e 329 (718)
+.+ .+.-+|||||+... ..|.. +...+.. ...|..||+||+... +...+... ..+++++++.++
T Consensus 89 ~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~ 166 (233)
T PRK08727 89 EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVA 166 (233)
T ss_pred HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHH
Confidence 111 12348999999743 23432 2222221 124667999998532 22222222 578999999999
Q ss_pred HHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 330 SWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 330 s~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
-.+++.+++....-. .+ ++....|+++++
T Consensus 167 ~~~iL~~~a~~~~l~-----l~---~e~~~~La~~~~ 195 (233)
T PRK08727 167 RAAVLRERAQRRGLA-----LD---EAAIDWLLTHGE 195 (233)
T ss_pred HHHHHHHHHHHcCCC-----CC---HHHHHHHHHhCC
Confidence 999999877543221 12 335556666664
No 72
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.16 E-value=3.8e-05 Score=76.38 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=87.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...+.|+|+.|+|||+|++.+++. .......+.++++..... ...+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------------~~~~~~---- 92 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------------FVPEVL---- 92 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------------hhHHHH----
Confidence 457899999999999999999984 322233455665532100 000111
Q ss_pred HHhcCceEEEEEecCCCh---hhhhHH-HhhCCC-CCCC-cEEEEEecchh---------hhhhcCCCCceeeccCCCHH
Q 047642 264 EFLEGRRYLVVVDDIWHK---SAWESL-RRAFPD-NGNG-SRIVITTRNEP---------VAMITDEKNFVYKLRFLNQE 328 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~---~~~~~l-~~~l~~-~~~g-sriivTTR~~~---------v~~~~~~~~~~~~l~~L~~~ 328 (718)
+.+.. --+|++||+... ..|+.. ...+.. ...| .++|+||+... +...+... .++++++++.+
T Consensus 93 ~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~ 170 (235)
T PRK08084 93 EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDE 170 (235)
T ss_pred HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHH
Confidence 11111 238899999753 345432 222221 1123 47999998553 23333333 68999999999
Q ss_pred hHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 329 ESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 329 es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
+-.+++.+++...... . -+++..-|++++.+ +...-..+++.+
T Consensus 171 ~~~~~l~~~a~~~~~~-----l---~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 171 EKLQALQLRARLRGFE-----L---PEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHHHHHHcCCC-----C---CHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 9999988766432211 1 24566667777743 333334444443
No 73
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.9e-06 Score=65.74 Aligned_cols=54 Identities=33% Similarity=0.400 Sum_probs=48.8
Q ss_pred ccccEEeeccCCcccccc-cccccCCCcEEEecCccccccCh-hhccccccceeee
Q 047642 588 IHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIA 641 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 641 (718)
++|++|++++|+++.+|+ .+.++++|++|++++|.++.+|+ .|.++++|++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeC
Confidence 478999999999999996 46889999999999999999976 5899999999987
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=98.15 E-value=2.5e-05 Score=86.45 Aligned_cols=170 Identities=16% Similarity=0.259 Sum_probs=99.2
Q ss_pred CceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
.+++|.++.++++.+|+..- +...+.+.|+|++|+||||+|+.++++. .|+ .+-++.+...+ ...+..++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~-~~~i~~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRT-ADVIERVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEccccccc-HHHHHHHHHH
Confidence 46899999999999998653 2226789999999999999999999952 132 22233333221 2222332222
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh------hhhHHHhhCCCCCCCcEEEEEecchh-hhh
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS------AWESLRRAFPDNGNGSRIVITTRNEP-VAM 311 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gsriivTTR~~~-v~~ 311 (718)
..... .....++-+||+|+++... .+..+...+. ..+..||+|+.+.. ...
T Consensus 88 ~~~~~--------------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 88 AATSG--------------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred hhccC--------------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 21100 0011367799999998642 2555555554 22345666664432 211
Q ss_pred -hcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 312 -ITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 312 -~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
........+++.+++.++....+...+...... .+ .+....|++.++
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-----i~---~eaL~~Ia~~s~ 193 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-----CD---DEALKEIAERSG 193 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-----CC---HHHHHHHHHHcC
Confidence 112223678899999999888877766433221 22 234566666665
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.4e-05 Score=86.14 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-------------------CCCceEEEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK-------------------GGFDCRAWVC 221 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv~ 221 (718)
.+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-. +.|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999998886643 34568899999999999999998731110 0111122221
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH-hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCc
Q 047642 222 VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF-LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGS 298 (718)
Q Consensus 222 vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs 298 (718)
.......+ +..++...+... ..+++-++|+|+++.. ..++.|...+......+
T Consensus 95 aas~~gvd------------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 95 AASRTGVE------------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred cccccCHH------------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 11111111 011222222211 2356679999999853 56778888777655566
Q ss_pred EEEEEe-cchhhhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 299 RIVITT-RNEPVAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 299 riivTT-R~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+|++| ....+..........+++.+++.++-.+.+.+.+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHH
Confidence 666544 4333332222223689999999999877766543
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.4e-05 Score=84.34 Aligned_cols=171 Identities=17% Similarity=0.200 Sum_probs=94.5
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+...... |+... .+..=..-+.+...-
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHHHhcCC
Confidence 3468999999999999887653 346889999999999999999987421111 11000 000000000110000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHH----HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYE----FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~ 312 (718)
. ..............+++...+.. -..++.-++|+|+++.. ...+.+...+..-..+.++|++|.+.. +...
T Consensus 86 h-pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 86 F-IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred C-CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHH
Confidence 0 00000000001122222221111 12356668999999864 467777777765556677777776542 2211
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.-.....+++.+++.++..+.+.+.+-
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~ 191 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILE 191 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHH
Confidence 112226789999999998888776553
No 77
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=0.00012 Score=85.71 Aligned_cols=302 Identities=14% Similarity=0.133 Sum_probs=159.9
Q ss_pred eeeccccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEE---EEEecCCC---CHHHHHHHH
Q 047642 163 VVGFEENTKMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRA---WVCVTQEY---TTRDLLQKT 235 (718)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~vs~~~---~~~~~l~~i 235 (718)
++||+.+++.|...+..- .....++.+.|..|||||+|+++|... +.+.+...+ +-....+. .....++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 689999999999988764 334669999999999999999999983 433321111 11111111 122344444
Q ss_pred HHHhcCCcccc----------------------hHHhh-------------hcCHH-----HHHHHHHHHh-cCceEEEE
Q 047642 236 IKSFQKPKIED----------------------LELME-------------RMTEE-----DLELHLYEFL-EGRRYLVV 274 (718)
Q Consensus 236 ~~~l~~~~~~~----------------------~~~~~-------------~~~~~-----~l~~~l~~~L-~~k~~LlV 274 (718)
+.++....... .+... ..... .....+.... +.|+.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 44441111000 00000 00001 1122233333 45699999
Q ss_pred EecCC-C-hhhh---hHHHhhCCCCC-CCcEE--EEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCC
Q 047642 275 VDDIW-H-KSAW---ESLRRAFPDNG-NGSRI--VITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADG 345 (718)
Q Consensus 275 LDdv~-~-~~~~---~~l~~~l~~~~-~gsri--ivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~ 345 (718)
+||+. - ...+ +.+....+-+. ....| +.|.+.. ............+.+.||+..+.-.+.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 99994 2 2222 23332222000 01122 3333333 22222233347899999999999999887654322
Q ss_pred CcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhcc-------------cc----C---CCCchHhHHHhcccCCChh
Q 047642 346 QATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWWH-------------LT----Q---DSDHVSPILALSYDELPYQ 405 (718)
Q Consensus 346 ~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~~-------------~~----~---~~~~i~~~l~~sy~~L~~~ 405 (718)
....+....|.+|..+ .|-.-+.+++.+... .. + ..+.+...+..-.+.||..
T Consensus 237 ------~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 ------LLPAPLLELIFEKTKG-NPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ------cccchHHHHHHHHhcC-CCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 2334466667777654 433333333332211 11 0 1122344588889999999
Q ss_pred hHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHHhhccccchhhccC-C--cEeE-E-EeCHHH
Q 047642 406 LKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELIDRSMIQIAERYL-D--KVKT-C-RIHDLI 480 (718)
Q Consensus 406 ~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~-~--~~~~-~-~mHdlv 480 (718)
.+..+-..||+-..+ +.+.|-..|-. .....+...++.|....++-..+.+. + .... | -.||.+
T Consensus 310 t~~Vl~~AA~iG~~F--~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 310 TREVLKAAACIGNRF--DLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHHhCccC--CHHHHHHHHhh---------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999987555 55555554421 33455666666665555553222111 1 1111 2 458888
Q ss_pred HHHHHHh
Q 047642 481 RELAIKK 487 (718)
Q Consensus 481 ~d~a~~~ 487 (718)
++.|...
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8877643
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.1e-05 Score=88.14 Aligned_cols=168 Identities=17% Similarity=0.257 Sum_probs=92.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceE-EEEEecCCCCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCR-AWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++........... +-.| ..-..|....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--------~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--------SSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--------hHHHHHhcCC
Confidence 468999999999998887653 34566899999999999999999842111110000 0000 0000000000
Q ss_pred cCCcccchHHhhhcCHH---HHHHHHHH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 240 QKPKIEDLELMERMTEE---DLELHLYE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~---~l~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
. ..............+ ++...+.. ...+++-++|||++... +.++.|+..+..-....++|++|.+. .+...
T Consensus 87 ~-~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 87 F-VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred C-ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 0 000000000000111 11111111 12466779999999854 56778877776555566666655544 34322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+-.....|++.+|+.++..+.+.+.+
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 22223689999999999988887654
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=98.09 E-value=2.6e-05 Score=81.59 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=96.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCce-EEEEEecCCCCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDC-RAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.+++|.++.++.|..++..+. ...+.++|++|+||||+|+.+.+.. ....|.. .+-++.+..... +.+++++..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHHHHHH
Confidence 457898888888877766543 3457799999999999999998841 1122221 111122211111 1222222211
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCCC
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDEK 316 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~~ 316 (718)
..... ..-.++.-++|||+++.. ...+.+...+......+++|+++... .+.......
T Consensus 89 ~~~~~-------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 89 AQKKV-------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred Hhccc-------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 10000 000245669999999864 33445555554444567777766543 221111111
Q ss_pred CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 317 NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 317 ~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
...+++.+++.++-...+...+-..+.. .+ .+....|+..+++
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~-----i~---~~~l~~i~~~~~g 192 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVP-----YV---PEGLEAIIFTADG 192 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCC-----CC---HHHHHHHHHHcCC
Confidence 2578999999999888887766432221 11 3355667777754
No 80
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.07 E-value=6.5e-05 Score=76.18 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=107.9
Q ss_pred CCceeeccccHHHHHHHHhcCCC-CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQ-QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
++.+.+|+..+..+..++...+. -+..|-|.|..|.|||.+.+++++.. .. ..+|+++-+.|+...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHHH
Confidence 45678999999999998877654 35567899999999999999999953 22 36899999999999999999999
Q ss_pred hcC-CcccchHHhhhcCHHHHHHHHHH--Hhc--CceEEEEEecCCChhhhhH-----HHhhCCCCCCCcEEEEEecchh
Q 047642 239 FQK-PKIEDLELMERMTEEDLELHLYE--FLE--GRRYLVVVDDIWHKSAWES-----LRRAFPDNGNGSRIVITTRNEP 308 (718)
Q Consensus 239 l~~-~~~~~~~~~~~~~~~~l~~~l~~--~L~--~k~~LlVLDdv~~~~~~~~-----l~~~l~~~~~gsriivTTR~~~ 308 (718)
.+. ............+..+....+.+ ... ++.++||||+++...+.+. +.....-.....-+|+++--..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 952 22211011111122333444444 222 4689999999986543322 2111111122234555554443
Q ss_pred hhhhc---CCC-CceeeccCCCHHhHHHHHHh
Q 047642 309 VAMIT---DEK-NFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 309 v~~~~---~~~-~~~~~l~~L~~~es~~Lf~~ 336 (718)
..... +.. ..++..+.-+.+|-.+++.+
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 33222 211 13566677788888887764
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.07 E-value=6.2e-05 Score=74.76 Aligned_cols=153 Identities=18% Similarity=0.306 Sum_probs=87.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
..+.|+|..|+|||.|++.+++. ....-..++|++..+ +... ... +.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------------~~~----~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------------GPE----LLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------------hHH----HHH
Confidence 57899999999999999999884 222223456765321 1110 011 122
Q ss_pred HhcCceEEEEEecCCCh---hhhhH-HHhhCCC-CCCCcEEEEEecchhhh---------hhcCCCCceeeccCCCHHhH
Q 047642 265 FLEGRRYLVVVDDIWHK---SAWES-LRRAFPD-NGNGSRIVITTRNEPVA---------MITDEKNFVYKLRFLNQEES 330 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gsriivTTR~~~v~---------~~~~~~~~~~~l~~L~~~es 330 (718)
.+.+- =+||+||+... ..|+. +...+.. ...|..+|+|++...-. ..+... .++++++++.++-
T Consensus 94 ~~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g-l~~~l~~~~~e~~ 171 (234)
T PRK05642 94 NLEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA-LVFQMRGLSDEDK 171 (234)
T ss_pred hhhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC-eeeecCCCCHHHH
Confidence 22221 26889999632 34543 3333332 23467789988754321 122222 5789999999999
Q ss_pred HHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 331 WKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 331 ~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
.+.+..++...... .+ +++...|++++.+ +...-..+++.+
T Consensus 172 ~~il~~ka~~~~~~-----l~---~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 172 LRALQLRASRRGLH-----LT---DEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHcCCC-----CC---HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 99998776543211 22 4566777777643 333444444444
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00016 Score=80.85 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=99.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+.+..-...... +...... ..-+.+...-
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~~g~ 86 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQIDAGR 86 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHhccC
Confidence 3469999999999999987653 346789999999999999999887321111100 0000000 0000000000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHH----HhcCceEEEEEecCCChh--hhhHHHhhCCCCCCCcEEEEEecchh-hhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYE----FLEGRRYLVVVDDIWHKS--AWESLRRAFPDNGNGSRIVITTRNEP-VAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gsriivTTR~~~-v~~~ 312 (718)
. ..............+++...+.. -..+++-++|+|+++... ..+.|...+..-....++|++|.+.. +...
T Consensus 87 ~-~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 87 Y-VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred c-cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 0 00000000001112222222211 013456689999998643 45666666654444566776665442 2211
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
.......+.+..++.++-...+.+.+-..+.. . -.+....|++.+++
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-----i---d~eAL~~Ia~~A~G 212 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-----Y---EPPALQLLGRAAAG 212 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-----c---CHHHHHHHHHHhCC
Confidence 11112467888999999888877655332211 1 12345666777653
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=4.3e-05 Score=84.07 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=97.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+.. .+... .
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~-~ 83 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRG-A 83 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcC-C
Confidence 458998888888888877653 3467799999999999999999885332233333334332211 00000 0
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHH-----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEec-chhhhhh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEF-----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTR-NEPVAMI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR-~~~v~~~ 312 (718)
......+........+++. .+.+. ..+++-++|+|+++.. ..++.+...+........+|++|. ...+...
T Consensus 84 h~dv~el~~~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 0000000000011112211 12222 2345668999999854 457788877765555555555554 3344333
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
+......+++.+++.++..+.+.+.+-.
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3333367999999999999999887643
No 84
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.06 E-value=5.2e-05 Score=77.53 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=83.4
Q ss_pred ceeeccccHHHHHHHHh---cC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 162 QVVGFEENTKMLIKQLL---KD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.++|.++-+++|.++.. .. .....-+.++|++|+||||+|+.++....-.+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 46777776666554321 10 01123588999999999999977766311111111123554442
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-----------hhhhHHHhhCCCCCCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-----------SAWESLRRAFPDNGNG 297 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~g 297 (718)
.+ ++..+.+.. .......+.+. ..-+|+||++... +.++.+...+.....+
T Consensus 99 ~~----l~~~~~g~~-----------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~ 160 (284)
T TIGR02880 99 DD----LVGQYIGHT-----------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD 160 (284)
T ss_pred HH----HhHhhcccc-----------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 11 222221111 11111222221 2358899999632 2345666666655556
Q ss_pred cEEEEEecchhhhhhcCCC-------CceeeccCCCHHhHHHHHHhhhC
Q 047642 298 SRIVITTRNEPVAMITDEK-------NFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 298 sriivTTR~~~v~~~~~~~-------~~~~~l~~L~~~es~~Lf~~~af 339 (718)
-+||+++.....-...... ...+++++++.+|-.+++...+-
T Consensus 161 ~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 161 LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 6777776544332221111 24688999999998888887653
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.2e-05 Score=82.11 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=88.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC--C-----------------ceEEEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG--F-----------------DCRAWVC 221 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F-----------------~~~~wv~ 221 (718)
.++||.+...+.|...+..+. -...+.++|++|+||||+|+.+.+....... + .....+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 468998888777777766543 3456899999999999999999874211110 0 0011111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH-----hcCceEEEEEecCCCh--hhhhHHHhhCCCC
Q 047642 222 VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF-----LEGRRYLVVVDDIWHK--SAWESLRRAFPDN 294 (718)
Q Consensus 222 vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~ 294 (718)
.+... ..+++. .+.+. ..+++-++|+|+++.. +..+.+...+...
T Consensus 93 aa~~~---------------------------gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p 144 (472)
T PRK14962 93 AASNR---------------------------GIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP 144 (472)
T ss_pred CcccC---------------------------CHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC
Confidence 11111 111111 12221 2346679999999754 4566676666544
Q ss_pred CCCcEEEEEecc-hhhhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 295 GNGSRIVITTRN-EPVAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 295 ~~gsriivTTR~-~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.....+|++|.+ ..+..........+++.+++.++-...+...+.
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHH
Confidence 444554444433 344443333346889999999998888777664
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=6.7e-05 Score=82.20 Aligned_cols=174 Identities=19% Similarity=0.231 Sum_probs=97.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCce-EEEEEecCCCCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDC-RAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.++||-+.-++.+...+..+. -...+.++|+.|+||||+|+.+++..-....... ..+...... ..-..+...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~- 94 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNH- 94 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcC-
Confidence 468999998888887776543 3467889999999999999999884221111000 000000000 000111000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEE-Eecchhhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVI-TTRNEPVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriiv-TTR~~~v~~~ 312 (718)
................+++...+... +.+++-++|+|+++.. ..++.+...+......+.+|+ ||+...+...
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 00000000000111223332222221 2456778999999864 568888877776555666654 5555555443
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.......+++.+++.++..+.+...+-.
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 3333367899999999999998877754
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00018 Score=73.59 Aligned_cols=157 Identities=16% Similarity=0.150 Sum_probs=84.6
Q ss_pred ceeeccccHHHHHHHH---hcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 162 QVVGFEENTKMLIKQL---LKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L---~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.++|.++-+++|.++. .-. ......+.++|++|+||||+|+.+++.....+.-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH---
Confidence 4778777666554432 110 112335889999999999999999773111111111225554411
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-----------hhhhHHHhhCCCCCCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-----------SAWESLRRAFPDNGNG 297 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~g 297 (718)
++ +....+.. .......+.+. ..-+|+||++... +..+.|...+.....+
T Consensus 101 -~l----~~~~~g~~-----------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~ 161 (287)
T CHL00181 101 -DL----VGQYIGHT-----------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD 161 (287)
T ss_pred -HH----HHHHhccc-----------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 22 22221110 11111122221 2248999999642 2344555555555556
Q ss_pred cEEEEEecchhhhhhcC-------CCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 298 SRIVITTRNEPVAMITD-------EKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 298 sriivTTR~~~v~~~~~-------~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.+||.++....+..... -....+.+++++.+|-.+++...+-.
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 67777776444322111 11257899999999998888877643
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.02 E-value=8.2e-05 Score=79.78 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=89.5
Q ss_pred CCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 159 GNEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
...++.|+++.++++.+.+... -..++-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 3457899999999998876421 123567899999999999999999984 3322 333221
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh-------------hhhhHHHhhC--
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK-------------SAWESLRRAF-- 291 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l-- 291 (718)
..+. ....+. .......+.+.. ...+.+|+|||++.. +....+...+
T Consensus 199 -~~l~----~~~~g~------------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ 261 (389)
T PRK03992 199 -SELV----QKFIGE------------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE 261 (389)
T ss_pred -HHHh----Hhhccc------------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh
Confidence 1111 111000 011111222222 345789999999753 1112222222
Q ss_pred -CC--CCCCcEEEEEecchhhhhh-c---CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 292 -PD--NGNGSRIVITTRNEPVAMI-T---DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 292 -~~--~~~gsriivTTR~~~v~~~-~---~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.. ...+.+||.||...+.... . +-....++++..+.++..++|..+...
T Consensus 262 ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 262 MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 21 1235677878876543221 1 112257899999999999999987654
No 89
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.00 E-value=7.6e-05 Score=78.40 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=89.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEec--CCCCHHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVT--QEYTTRDLLQKTIKS 238 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~l~~i~~~ 238 (718)
.+++|+++.++.+..++..+. ...+.|+|.+|+||||+|+.+.+... ...+. ..++.+. ..... ....+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~-~~~~~~i~~ 91 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGI-DVIRNKIKE 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccch-HHHHHHHHH
Confidence 458899999999999886643 34579999999999999999988421 11121 1222221 11111 111111111
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCC
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDE 315 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~ 315 (718)
+..... .-...+-+||+|+++.. +..+.+...+......+++|+++... .+......
T Consensus 92 ~~~~~~--------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 92 FARTAP--------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHhcCC--------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 110000 00123568999998754 34556666666555567777776432 22111111
Q ss_pred CCceeeccCCCHHhHHHHHHhhhCC
Q 047642 316 KNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
....+++.+++.++....+...+-.
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHH
Confidence 2246889999999988888776643
No 90
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.99 E-value=9.1e-05 Score=75.11 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=80.8
Q ss_pred ceeeccccHHHHHHHHhc-------------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 162 QVVGFEENTKMLIKQLLK-------------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.++|.++.+++|.+.... ..+...-+.++|++|+||||+|+.+++...-.+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666543211 1224567889999999999999999873110011111123333221
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh----------hhhhHHHhhCCCCCCCc
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK----------SAWESLRRAFPDNGNGS 298 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~~gs 298 (718)
++.. ..-+. ........+... ..-+|++|+++.. +..+.+...+.......
T Consensus 84 -~l~~----~~~g~-----------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 84 -DLVG----EYIGH-----------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -Hhhh----hhccc-----------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 1111 10000 011111222221 1348899999742 23455555555444444
Q ss_pred EEEEEecchhhhh------hcCCC-CceeeccCCCHHhHHHHHHhhhC
Q 047642 299 RIVITTRNEPVAM------ITDEK-NFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 299 riivTTR~~~v~~------~~~~~-~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.+|+++....... ..... ...+++++++.++-.+++.+.+.
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5566654433211 00011 14578899999999988887664
No 91
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=1e-06 Score=95.78 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=98.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+.++..|.+.++.... +...+..+++|++|++++|.|+ . + ..+..++.|+.|++++|.|+.++ .+..
T Consensus 94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~---~---i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~ 160 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKIT---K---L-EGLSTLTLLKELNLSGNLISDIS-GLES 160 (414)
T ss_pred ccceeeeeccccchhh-----cccchhhhhcchheeccccccc---c---c-cchhhccchhhheeccCcchhcc-CCcc
Confidence 5566667776666422 2232567888888888888887 4 3 34667777888888888888776 3555
Q ss_pred cCCCcEEEecCccccccChh-hccccccceeeecccCcccCC---CccccccccceeccccchHHhcccCC--CCeEEEe
Q 047642 610 LQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIARPLGHLQVS---TLTNLQTLKYVNFQQWDAVDARNLIN--LQELEIR 683 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~p~~~~---~l~~L~~L~~~~~~~~~~~~l~~l~~--L~~L~l~ 683 (718)
+.+|+.+++++|.+..++.. ...+.+|+.+.+.......+. .+..+..+.+..+.......+..+.. |+.+++.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS 240 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence 78888888888888877654 466777777766322222222 22222222222222222222223332 5666666
Q ss_pred ec-cccHHHHhhccCCCCeEEEeeCCC
Q 047642 684 EI-PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 684 ~~-~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+| ....+..+..+..+..|++.+|..
T Consensus 241 ~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 241 GNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cCccccccccccccccccccchhhccc
Confidence 66 222225556666666666666544
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=5.8e-05 Score=83.22 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=94.3
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......-.... +. +..+..-...+.|...
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~-~~PCG~C~sC~~I~aG- 90 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT-AQPCGQCRACTEIDAG- 90 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC-CCCCcccHHHHHHHcC-
Confidence 3468999999999999887654 346778999999999999999887421100000000 00 0000000001111000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEE-Eecchhhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVI-TTRNEPVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriiv-TTR~~~v~~~ 312 (718)
.......+........+++.+.+... ..++.-++|+|+++.. ..++.|+..+..-..+.++|+ ||....+...
T Consensus 91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 00000000000111233333222221 1355668999999854 567788877765445555555 5444444322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
+......+.+..++.++..+.+.+.+-
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 222226789999999999888876553
No 93
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=8.7e-05 Score=73.06 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=76.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...+.|+|+.|+|||+|++.+++... ..+++.. .+..+++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~--------------------------- 83 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAA--------------------------- 83 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHH---------------------------
Confidence 35689999999999999999987421 1133211 0000010
Q ss_pred HHhcCceEEEEEecCCChh-hhhHHHhhCCC-CCCCcEEEEEecc---------hhhhhhcCCCCceeeccCCCHHhHHH
Q 047642 264 EFLEGRRYLVVVDDIWHKS-AWESLRRAFPD-NGNGSRIVITTRN---------EPVAMITDEKNFVYKLRFLNQEESWK 332 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~~-~~~~l~~~l~~-~~~gsriivTTR~---------~~v~~~~~~~~~~~~l~~L~~~es~~ 332 (718)
..+.+ -+|++||+.... .-+.+...+.. ...|..||+|++. +.+...+... .++++++++.++-.+
T Consensus 84 ~~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~ 160 (226)
T PRK09087 84 NAAAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQ 160 (226)
T ss_pred Hhhhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHH
Confidence 11111 278889996431 11223332321 1336779998873 3334444443 689999999999999
Q ss_pred HHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 333 LFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 333 Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
++.+++-...-. .+ +++..-|++++.
T Consensus 161 iL~~~~~~~~~~-----l~---~ev~~~La~~~~ 186 (226)
T PRK09087 161 VIFKLFADRQLY-----VD---PHVVYYLVSRME 186 (226)
T ss_pred HHHHHHHHcCCC-----CC---HHHHHHHHHHhh
Confidence 999887442211 12 345566666664
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=8.6e-05 Score=79.77 Aligned_cols=191 Identities=12% Similarity=0.072 Sum_probs=102.5
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+.......... ........- ..+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHccC
Confidence 3468999999998888887654 2356899999999999999999884211110000 000001111 1111111
Q ss_pred cCCcccchHHhhhcCHHH---HHHHHHHH-hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEE-EEecchhhhhh
Q 047642 240 QKPKIEDLELMERMTEED---LELHLYEF-LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIV-ITTRNEPVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~---l~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrii-vTTR~~~v~~~ 312 (718)
..... ..........++ +...+... ..++.-++|+|+++.. +.++.+...+..-......| .||....+...
T Consensus 89 ~~dvi-EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 89 SSDVL-EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred Cccce-eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 00000 000000111222 22222211 2356669999999854 56888877776444445544 45444444333
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
.......|.+.+++.++-.+.+.+.+-..+.. --.+....|++.+++
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--------~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--------YDQEGLFWIAKKGDG 214 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHcCC
Confidence 32223679999999998888877765432211 113355667777654
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.95 E-value=6.6e-05 Score=78.69 Aligned_cols=147 Identities=17% Similarity=0.200 Sum_probs=84.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.+++|.++..+.+..++..+. -..++.++|++|+||||+|+.+++. .... ...++.+. .. .+.+++.+...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l~~~ 91 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRLTRF 91 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHHHHH
Confidence 3568999999999999887543 4568888999999999999999984 2222 22333332 11 11111111111
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhcCC
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRNEP-VAMITDE 315 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~~~ 315 (718)
... ..+.+.+-+||+||++.. +..+.+...+.....++++|+||.... +......
T Consensus 92 ~~~---------------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 92 AST---------------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHh---------------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 000 001234557899999754 233344444544456778888886543 1111111
Q ss_pred CCceeeccCCCHHhHHHHHH
Q 047642 316 KNFVYKLRFLNQEESWKLFC 335 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~Lf~ 335 (718)
....+.++..+.++..+++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 11456676777777665544
No 96
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.93 E-value=0.00018 Score=70.58 Aligned_cols=178 Identities=18% Similarity=0.236 Sum_probs=95.8
Q ss_pred HHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH
Q 047642 171 KMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL 249 (718)
Q Consensus 171 ~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~ 249 (718)
-...+.+... +.....+.|+|..|+|||.|.+++++...-...-..+++++ ..++...+...+.....
T Consensus 20 ~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~~----- 88 (219)
T PF00308_consen 20 YAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDGEI----- 88 (219)
T ss_dssp HHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTTSH-----
T ss_pred HHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcccc-----
Confidence 3444444443 33345688999999999999999999422111112344543 44555666555543211
Q ss_pred hhhcCHHHHHHHHHHHhcCceEEEEEecCCCh---hhhhH-HHhhCCC-CCCCcEEEEEecchhh---------hhhcCC
Q 047642 250 MERMTEEDLELHLYEFLEGRRYLVVVDDIWHK---SAWES-LRRAFPD-NGNGSRIVITTRNEPV---------AMITDE 315 (718)
Q Consensus 250 ~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~-~~~gsriivTTR~~~v---------~~~~~~ 315 (718)
+ .+++.+. .-=+|++||++.. ..|++ +...+.. ...|.+||+|++.... ...+..
T Consensus 89 ------~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 89 ------E----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp ------H----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred ------h----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 1 1333333 3348899999754 22332 2222221 2357789999965432 122223
Q ss_pred CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 316 KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
. .++++++++.++-.+++.+++-...-. --+++..-|++++. .+..+...+++++
T Consensus 158 G-l~~~l~~pd~~~r~~il~~~a~~~~~~--------l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 158 G-LVVELQPPDDEDRRRILQKKAKERGIE--------LPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp S-EEEEE----HHHHHHHHHHHHHHTT----------S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred c-chhhcCCCCHHHHHHHHHHHHHHhCCC--------CcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 3 579999999999999999888543321 12445666666653 2334444444433
No 97
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.91 E-value=5.7e-06 Score=82.63 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=85.3
Q ss_pred hhccCCceEEEEEecCCccccccc-ccccchhhhhcccccEEeeccCCccccc--------------ccccccCCCcEEE
Q 047642 553 TLCSSLRFLRVLDLEDTRIEHSGK-VLRLTDSIGKLIHLRYFGFKCNSLVEFP--------------RSIGNLQCLKTMV 617 (718)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~l~~~~~-l~~~p~~i~~l~~L~~L~l~~~~l~~lp--------------~~i~~l~~L~~L~ 617 (718)
..+-.++.|++||||.|-|.. . ...+-.-|.++..|+.|.|.+|.+...- +-+.+-+.|+++.
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~--~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGP--KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI 163 (382)
T ss_pred HHHhcCCceeEeeccccccCc--cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence 344556677777777777652 2 0001123455677777777777664221 1223345677777
Q ss_pred ecCccccccCh-----hhccccccceeee--cccCccc-------CCCccccccccceecc------ccchHHhcccCCC
Q 047642 618 ASGNSCWKLPS-----QISKLHQLRHLIA--RPLGHLQ-------VSTLTNLQTLKYVNFQ------QWDAVDARNLINL 677 (718)
Q Consensus 618 l~~~~i~~lp~-----~i~~L~~L~~L~l--~~~~p~~-------~~~l~~L~~L~~~~~~------~~~~~~l~~l~~L 677 (718)
...|.+..-|. .+...+.|..+.+ ++.-|.+ +..+++|+.|++.+|. ......+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 77776654433 3444556666655 3333333 3556666666666665 2234456666667
Q ss_pred CeEEEeec------cccHHHHhhc-cCCCCeEEEeeCCC
Q 047642 678 QELEIREI------PYTNMNFILQ-VNSLRSLTLQTDTA 709 (718)
Q Consensus 678 ~~L~l~~~------~~~~~~~l~~-l~~L~~L~l~~~~~ 709 (718)
+.|++++| ..++...+.+ .++|+.|.+.+|..
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 77776666 2223333332 36677777666643
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00012 Score=81.89 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=92.1
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC--ceEEEEEecCCCCHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF--DCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
-.++||-+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+..-..+.. ...-. ..+..-..-+.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 3468998887888888877653 34678999999999999999986531111100 00000 00000011111100
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc-hhhh
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN-EPVA 310 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~-~~v~ 310 (718)
-................+++.+.+... ..++.-++|||+|+.. +.++.+...+..-....++|++|.+ ..+.
T Consensus 90 -g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 90 -GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred -CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 000000000000111222222222211 1234558899999854 5677888777655556666655543 3333
Q ss_pred hhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 311 MITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.........++++.++.++-.+.+.+.+-
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 22222236799999999998888876653
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.90 E-value=7.6e-05 Score=71.34 Aligned_cols=176 Identities=24% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCceeeccccHHHHHHHHh---cCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLL---KDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
-.+|||-++-++.+.-++. ..++...-+.+||++|+||||||..+.+. ....|. +++.. ...-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~k-------- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIEK-------- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C--S--------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhhh--------
Confidence 4579999988887655543 23445778999999999999999999994 444442 22211 1000
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCC--------CCC---------
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDN--------GNG--------- 297 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~--------~~g--------- 297 (718)
..++...+.. + +++.+|.+|++... .+-+.+..++.++ +++
T Consensus 89 ------------------~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 89 ------------------AGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------------------CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------------------HHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 0112221211 2 23457777888753 3334444333221 112
Q ss_pred --cEEEEEecchhhhhhcCCCC-ceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHH
Q 047642 298 --SRIVITTRNEPVAMITDEKN-FVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWH 374 (718)
Q Consensus 298 --sriivTTR~~~v~~~~~~~~-~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~ 374 (718)
+-|=-|||...+..-..... -+.+++..+.+|-.++..+.+-.-.. +--++.+.+|+++|+ .++.--.
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--------~i~~~~~~~Ia~rsr-GtPRiAn 219 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--------EIDEDAAEEIARRSR-GTPRIAN 219 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---------EE-HHHHHHHHHCTT-TSHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--------CcCHHHHHHHHHhcC-CChHHHH
Confidence 22334888665544333321 34589999999999999877644322 223567888888884 3443333
Q ss_pred HHHH
Q 047642 375 TVKN 378 (718)
Q Consensus 375 ~~~~ 378 (718)
.++.
T Consensus 220 rll~ 223 (233)
T PF05496_consen 220 RLLR 223 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.90 E-value=0.00031 Score=67.45 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=48.3
Q ss_pred CceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 268 GRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 268 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
+.+-++|+||++.. +.++.+...+......+.+|++|++. .+..........+++.+++.++..+.+...
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 45668999999754 45777888877655567777777654 332222222368999999999988888765
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00017 Score=78.48 Aligned_cols=176 Identities=13% Similarity=0.163 Sum_probs=102.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-------------------CCCceEEEE
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK-------------------GGFDCRAWV 220 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~~wv 220 (718)
-.++||-+.-++.+...+..+. -.+.+.++|+.|+||||+|+.+....-.. +.+..++.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3568998888888877776543 34578999999999999999887621000 111112233
Q ss_pred EecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCc
Q 047642 221 CVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGS 298 (718)
Q Consensus 221 ~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs 298 (718)
..+......+ .+++++.... .-..++.-++|+|+++.. +..+.|...+..-...+
T Consensus 91 daas~~~vdd-IR~Iie~~~~----------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v 147 (491)
T PRK14964 91 DAASNTSVDD-IKVILENSCY----------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHV 147 (491)
T ss_pred ecccCCCHHH-HHHHHHHHHh----------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCe
Confidence 2222222111 1122211110 001245568999999754 45777877777655667
Q ss_pred EEEEEec-chhhhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 299 RIVITTR-NEPVAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 299 riivTTR-~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
++|++|. ...+..........+++.+++.++-.+.+.+.+...+.. . -.+....|++.+++
T Consensus 148 ~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-----i---~~eAL~lIa~~s~G 209 (491)
T PRK14964 148 KFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-----H---DEESLKLIAENSSG 209 (491)
T ss_pred EEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-----C---CHHHHHHHHHHcCC
Confidence 7666554 334443333333678999999999888888766443221 1 12344566776653
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.88 E-value=0.00022 Score=76.08 Aligned_cols=173 Identities=13% Similarity=0.176 Sum_probs=99.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc--------------------CCCceEEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK--------------------GGFDCRAWV 220 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv 220 (718)
.+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.....-. .+++. .++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 468999999999999886653 34578899999999999998887632110 02221 222
Q ss_pred EecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCC
Q 047642 221 CVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNG 297 (718)
Q Consensus 221 ~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 297 (718)
.-...... +.+++++. .+.. -..+++-++|+|+++.. ...+.+...+......
T Consensus 92 ~~~~~~~~-~~~~~l~~-----------------------~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 92 DAASNNGV-DDIREILD-----------------------NVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred eccccCCH-HHHHHHHH-----------------------HHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11111010 01111111 1111 12245558899998754 4567777777655556
Q ss_pred cEEEEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 298 SRIVITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 298 sriivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
+.+|++|.+.. +..........+++.+++.++..+.+...+-..+.. .+ .+....++..+++
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~-----i~---~~a~~~l~~~~~g 210 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK-----IE---DEALELIARAADG 210 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC-----CC---HHHHHHHHHHcCC
Confidence 77777765543 222222222568888999998888877765332211 11 2455566666654
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=0.00021 Score=74.51 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=110.8
Q ss_pred CCCCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 235 (718)
..+..++||+.++..+.+|+... .....-+-|.|.+|.|||.+...++.+..-...-.+++.++...-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 44567999999999999999765 3346688999999999999999999964332222345676665545677778888
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCc--eEEEEEecCCChh--hhhHHHhhCCCC-CCCcEEEEEecch---
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLEGR--RYLVVVDDIWHKS--AWESLRRAFPDN-GNGSRIVITTRNE--- 307 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--~~LlVLDdv~~~~--~~~~l~~~l~~~-~~gsriivTTR~~--- 307 (718)
...+...... .-..-+....+.....+. -+|+|||.++... .-..+...|.|- -++||+|+.---.
T Consensus 227 ~~~~~q~~~s------~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 227 FSSLLQDLVS------PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHhcC------CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 7777321110 011134555666666543 5899999987532 111222222221 2466665532111
Q ss_pred ------hhhhh-cCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 308 ------PVAMI-TDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 308 ------~v~~~-~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.-... .+-....+..++-+.++-.++|..+.-.
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 10111 1222367888999999999999988744
No 104
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1e-05 Score=56.55 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=35.3
Q ss_pred ceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPR 605 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~ 605 (718)
++|++|++++|+|+ . +|+.+++|++|++|++++|.|+.+|+
T Consensus 1 ~~L~~L~l~~N~i~---~---l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---D---LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S---S---HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc---c---cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999 6 88889999999999999999998774
No 105
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00011 Score=82.29 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=92.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||-+..++.|...+..+. -...+.++|..|+||||+|+.+.+..-....+. ...+..-...+.|...-
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCC
Confidence 3468999999998888887653 345678999999999999999987421111000 00000001111111000
Q ss_pred cCCcccchHHhhhcCHHHHH---HHHHH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLE---LHLYE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~---~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
. ..............+++. ..+.. -..+++-++|+|+++.. ...+.|...+..-....++|.+|.+. .+...
T Consensus 87 ~-~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 87 F-VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred C-CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0 000000000001122222 21111 12456679999999854 56777777776544555555555444 44322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.-.....|++.+++.++..+.+.+.+
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 22223689999999999988887654
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0002 Score=76.30 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred ceeeccccHHHHHHHHhcCCC--------CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHH
Q 047642 162 QVVGFEENTKMLIKQLLKDEQ--------QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 233 (718)
+++|-+.-++.|...+..+.. -.+-+.++|+.|+||||+|+.+.+..-....- +-+.... ..-+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHHH
Confidence 578988888889888876531 35678899999999999999987631111000 0000000 0000
Q ss_pred HHHHHhcCCcccc-hHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEec
Q 047642 234 KTIKSFQKPKIED-LELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTR 305 (718)
Q Consensus 234 ~i~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR 305 (718)
.+... ..+.... .++......+++. .+.+.+ .+++-++|+|+++.. ...+.+...+..-..+..+|++|.
T Consensus 78 ~~~~~-~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 78 TVLAG-THPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHhcC-CCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 00000 0000000 0000011122222 122221 244558888999854 445667666665455666666665
Q ss_pred ch-hhhhhcCCCCceeeccCCCHHhHHHHHHh
Q 047642 306 NE-PVAMITDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 306 ~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
+. .+..........+.+.+++.++..+.+..
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHH
Confidence 54 33322222236889999999999888864
No 107
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.84 E-value=4.8e-05 Score=80.68 Aligned_cols=69 Identities=25% Similarity=0.281 Sum_probs=56.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 233 (718)
.++++.++..+.+...|.... .|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 357888999999999887543 678899999999999999998644445778888999999988776654
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00021 Score=78.96 Aligned_cols=170 Identities=15% Similarity=0.211 Sum_probs=90.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+..--...+.. ..++.=...+.|...
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~g- 85 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-------NPCNDCENCREIDEG- 85 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-------ccCCCCHHHHHHhcC-
Confidence 3468999999999999997653 3456789999999999999998874211111100 000000000000000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHH----HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYE----FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~----~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
................++..+.+.. -..++.-++|+|+++.. +..+.+...+..-...+++|++|.+. .+...
T Consensus 86 ~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~t 165 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVT 165 (509)
T ss_pred CCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHH
Confidence 0000000000011122222221111 11345568999999853 56777777776555567776655443 33222
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.......+++++++.++-...+.+.+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 166 VLSRCLQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHH
Confidence 21222568889999888666555443
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0016 Score=75.66 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=92.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+.+........... .+..=..-+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~-------pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST-------PCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC-------CCcccHHHHHHHcCCC
Confidence 468999998899988887653 34568899999999999999998742211111000 0000000000000000
Q ss_pred CC-cccchHHhhhcCHHHHHHHHHHH-----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEec-chhhhh
Q 047642 241 KP-KIEDLELMERMTEEDLELHLYEF-----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTR-NEPVAM 311 (718)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~l~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR-~~~v~~ 311 (718)
.. .............+++.. +++. ..++.-++|||+++.. ..++.|+..+..-...+.+|++|. ...+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 000000000011222222 2211 2345557889999854 567778888876556666665554 334443
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+......|++..++.++-.+.+.+..
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 333333689999999998877776644
No 110
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=7.9e-07 Score=96.14 Aligned_cols=118 Identities=23% Similarity=0.182 Sum_probs=62.5
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceeccc
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQQ 665 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~~ 665 (718)
|..-+.++|.+..+..++.-++.|+.|||++|++++.- .+..|++|+||+++ ..+|.--..-..|+.|.+.+|.-
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 44445555666666656655666666666666665554 45566666666661 11221111112355555555544
Q ss_pred cchHHhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEeeCC
Q 047642 666 WDAVDARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQTDT 708 (718)
Q Consensus 666 ~~~~~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~~ 708 (718)
.....+.+|.+|+.|+++.| .-.-...+..|..|..|+|.+|-
T Consensus 245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 44455666666666666666 22222334455566666666653
No 111
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00013 Score=78.54 Aligned_cols=175 Identities=15% Similarity=0.210 Sum_probs=91.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE-ecCCCCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC-VTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~l~~i~~~l 239 (718)
.+++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+...-...+....|.. +......=..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 468898888888888886653 345688999999999999999887422111111111110 000000000111111000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT-RNEPVAM 311 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT-R~~~v~~ 311 (718)
.. .............+++.. +.+.+ .+++-++|+|+++.. ..++.+...+..-...+.+|++| +...+..
T Consensus 95 ~~-n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SL-NISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CC-CeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 00 000000000011223222 22222 345568899999854 46788888877655667766555 4334432
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
........+++.+++.++..+.+...+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 222122568888999888877766554
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00023 Score=76.14 Aligned_cols=155 Identities=14% Similarity=0.235 Sum_probs=88.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc------CCCceEEEEEecC--CCCHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK------GGFDCRAWVCVTQ--EYTTRDLL 232 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------~~F~~~~wv~vs~--~~~~~~~l 232 (718)
.+++|.+..++.+...+..+. -.+.+.++|++|+||||+|+.+.+..... ..|...+ +.+.. .... +..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV-DDI 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH-HHH
Confidence 458999999999999887653 35688899999999999999998742111 1121111 01110 0000 111
Q ss_pred HHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe-cchhh
Q 047642 233 QKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT-RNEPV 309 (718)
Q Consensus 233 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT-R~~~v 309 (718)
+++++.+.. .-..+++-+||+|+++.. ..++.+...+......+.+|++| ....+
T Consensus 94 ~~l~~~~~~----------------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 94 RNLIDQVRI----------------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHHHHHHhh----------------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 111111100 011244558999998754 34677766665444455555555 33333
Q ss_pred hhhcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 310 AMITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
..........+++.+++.++....+...+..
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHH
Confidence 3222222257889999999988888776643
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00016 Score=79.82 Aligned_cols=171 Identities=15% Similarity=0.209 Sum_probs=91.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+.+.....+ |.... .+..-...+.+....
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 3468999999999998886653 346788999999999999999987421111 21110 011111111111110
Q ss_pred cCCcccchHHhhhcCHHHHH---HHHHHH-hcCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEEe-cchhhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLE---LHLYEF-LEGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVITT-RNEPVAMI 312 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~---~~l~~~-L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivTT-R~~~v~~~ 312 (718)
. ..............+++. ..+... ..+++-++|+|+++. ...++.|...+..-.....+|++| ....+...
T Consensus 87 h-~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 87 S-VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred C-CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 0 000000000001112221 111110 123344699999975 356777777776544456565544 43334322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.......+++.+++.++....+...+-
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHH
Confidence 222225789999999998887776553
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00029 Score=78.26 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=89.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-------------------CCceEEEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-------------------GFDCRAWVC 221 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~ 221 (718)
.++||-+.-++.+..++..+. -...+.++|+.|+||||+|+.+.+..-... .|...+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 468999999999988887653 245678999999999999999987421111 011111111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCC
Q 047642 222 VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNG 295 (718)
Q Consensus 222 vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 295 (718)
.+. ....+++...+... ..+++-++|+|+++.. ...+.+...+..-.
T Consensus 95 ~~~---------------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp 147 (527)
T PRK14969 95 AAS---------------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (527)
T ss_pred ccc---------------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC
Confidence 111 11122222111111 1355668999999854 35777777776655
Q ss_pred CCcEEEEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 296 NGSRIVITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 296 ~gsriivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..+.+|++|.+. .+..........+++++++.++..+.+.+.+
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 566666665443 2221111112578889999988887776544
No 115
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.77 E-value=0.00026 Score=77.25 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=90.6
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCC-----CceEEEEEec
Q 047642 160 NEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGG-----FDCRAWVCVT 223 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs 223 (718)
-.++.|.+..+++|.+.+... -..++-+.++|++|+|||++|+++++. ...+ +....|+.+.
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEecc
Confidence 346788999999988876421 123456899999999999999999995 3322 1223344433
Q ss_pred CCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh---------hh-----hhHHH
Q 047642 224 QEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK---------SA-----WESLR 288 (718)
Q Consensus 224 ~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~---------~~-----~~~l~ 288 (718)
.. ++ +....+.. ......+....+... .+++.+|+||+++.. .+ ...+.
T Consensus 259 ~~----eL----l~kyvGet--------e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 259 GP----EL----LNKYVGET--------ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred ch----hh----cccccchH--------HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 21 11 11110000 000111222222222 357899999999742 11 23444
Q ss_pred hhCCCC--CCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 289 RAFPDN--GNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 289 ~~l~~~--~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..+... ..+..||.||...+..... +-....++++..+.++..++|..+.
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 444422 1344566666555432211 1112568999999999999999875
No 116
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=3.8e-06 Score=91.41 Aligned_cols=150 Identities=22% Similarity=0.258 Sum_probs=103.1
Q ss_pred hhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcc
Q 047642 553 TLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISK 632 (718)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 632 (718)
..+..+++|..|++.+|.|. . +...+..+++|++|++++|.|+.+. .+..+..|+.|++++|.|+.++. +..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~---~---i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~ 160 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIE---K---IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LES 160 (414)
T ss_pred cccccccceeeeeccccchh---h---cccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Ccc
Confidence 34677889999999999998 5 5544888999999999999999887 57788889999999999888863 556
Q ss_pred ccccceeeec----ccCccc-CCCccccccccceeccccchHHhcccCCCCeEEEeeccccHHHHhhccC--CCCeEEEe
Q 047642 633 LHQLRHLIAR----PLGHLQ-VSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREIPYTNMNFILQVN--SLRSLTLQ 705 (718)
Q Consensus 633 L~~L~~L~l~----~~~p~~-~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~--~L~~L~l~ 705 (718)
+.+|+.+++. ..+... ...+.+|+.+.+..+....+..+..+..+..+++..|.......+..+. +|+.|+++
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLS 240 (414)
T ss_pred chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcc
Confidence 7888888772 112211 3667777777777666444444444555555566655222222223333 37888888
Q ss_pred eCCCC
Q 047642 706 TDTAF 710 (718)
Q Consensus 706 ~~~~~ 710 (718)
+|...
T Consensus 241 ~n~i~ 245 (414)
T KOG0531|consen 241 GNRIS 245 (414)
T ss_pred cCccc
Confidence 87654
No 117
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.74 E-value=4.4e-06 Score=83.42 Aligned_cols=180 Identities=18% Similarity=0.134 Sum_probs=101.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccc--cccc----c--cchhhhhcccccEEeeccCCcc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHS--GKVL----R--LTDSIGKLIHLRYFGFKCNSLV 601 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~l~----~--~p~~i~~l~~L~~L~l~~~~l~ 601 (718)
+++|+.|.+++|.+.......+...++++..|+.|.|.+|.+... ..+. . ..+-+++-+.||.+....|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 456666666666655433444445556666666666666665410 0000 0 0011233455666666666665
Q ss_pred ccc-----ccccccCCCcEEEecCcccc-----ccChhhccccccceeeec---------ccCcccCCCcccccccccee
Q 047642 602 EFP-----RSIGNLQCLKTMVASGNSCW-----KLPSQISKLHQLRHLIAR---------PLGHLQVSTLTNLQTLKYVN 662 (718)
Q Consensus 602 ~lp-----~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~---------~~~p~~~~~l~~L~~L~~~~ 662 (718)
.-| ..+...+.|+.+.++.|.|. -+-..+..+++|+.|+++ ..+-..++.+++|+.|++.+
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 333 22334456666666666443 223345566666666661 12233456666777777777
Q ss_pred cc------ccchHHhc-ccCCCCeEEEeec------cccHHHHhhccCCCCeEEEeeCCC
Q 047642 663 FQ------QWDAVDAR-NLINLQELEIREI------PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 663 ~~------~~~~~~l~-~l~~L~~L~l~~~------~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
|. ......+. ..++|+.|.+.+| ...+..++..++.|..|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 75 12233333 3678899998888 344556677788999999999877
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00037 Score=77.72 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=91.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-....+ +-..... ..-+.|...-.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhcccC
Confidence 468999999999999887653 345678999999999999999987421111100 0000000 00011100000
Q ss_pred CC-cccchHHhhhcCHHH---HHHHHHHH-hcCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEEe-cchhhhhh
Q 047642 241 KP-KIEDLELMERMTEED---LELHLYEF-LEGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVITT-RNEPVAMI 312 (718)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~---l~~~l~~~-L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivTT-R~~~v~~~ 312 (718)
.. .............++ +...+... ..+++-++|+|++.. ....+.|...+..-.....+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00 000000000001122 22222111 134556889999974 456777877777655566655544 44444332
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.......+++..++.++..+.+.+.+-
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 222236799999999988877766543
No 119
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0005 Score=72.61 Aligned_cols=173 Identities=15% Similarity=0.153 Sum_probs=96.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEE------EEEecCCCCHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRA------WVCVTQEYTTRDLLQ 233 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~l~ 233 (718)
..+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|..+.+..--........ =..+.... ..-+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 4578999999999998887753 345789999999999999987776321111100000 00000000 0111
Q ss_pred HHHHHhcCCcccch-H---H-----hhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCC
Q 047642 234 KTIKSFQKPKIEDL-E---L-----MERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNG 297 (718)
Q Consensus 234 ~i~~~l~~~~~~~~-~---~-----~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 297 (718)
.+. .-..+..... + + ......++ ++.+.+.+ .+.+.++|+||++.. ...+.|...+..-..+
T Consensus 94 ~i~-~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 94 RIA-AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHH-ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111 1111100000 0 0 01122344 23333443 245678999999854 4566777776655556
Q ss_pred cEEEEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 298 SRIVITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 298 sriivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+.+|++|.+.. +..........+.+.+++.++..+++....
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 66777776653 332223333689999999999999988753
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00065 Score=74.07 Aligned_cols=169 Identities=12% Similarity=0.113 Sum_probs=93.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
..-+.|+|..|+|||+|++++.+.......-..+++++ ..+++..+...+.... .....++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------------~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------------KEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------------hHHHHHH
Confidence 34688999999999999999998321111112234443 3456666666554210 1112233
Q ss_pred HHhcCceEEEEEecCCCh---hhh-hHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceeeccCCCHHh
Q 047642 264 EFLEGRRYLVVVDDIWHK---SAW-ESLRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKNFVYKLRFLNQEE 329 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~~~~~l~~L~~~e 329 (718)
+.++ ..-+||+||+... +.+ +.+...+.. ...|..||+|+.... +...+..+ -+..+++++.++
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~ 279 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKT 279 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHH
Confidence 3333 3448899999643 222 334333331 234557888876432 22233333 578899999999
Q ss_pred HHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 330 SWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 330 s~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
-.+++.+++-..... ..--+++...|+..+. .+...-..+++++
T Consensus 280 r~~iL~~~~~~~gl~------~~l~~evl~~Ia~~~~-gd~R~L~gaL~~l 323 (450)
T PRK14087 280 ATAIIKKEIKNQNIK------QEVTEEAINFISNYYS-DDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHHhcCCC------CCCCHHHHHHHHHccC-CCHHHHHHHHHHH
Confidence 999999887432210 0111345566666664 2344444444433
No 121
>PRK08116 hypothetical protein; Validated
Probab=97.69 E-value=0.0002 Score=72.40 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=57.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
..+.++|.+|+|||.||.++++. +..+...+++++ ..+++..+......... .+..+ +.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~--------~~~~~----~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSGK--------EDENE----IIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcccc--------ccHHH----HHH
Confidence 45889999999999999999995 332333455654 33455555444332111 01112 223
Q ss_pred HhcCceEEEEEecCC--ChhhhhH--HHhhCCC-CCCCcEEEEEecch
Q 047642 265 FLEGRRYLVVVDDIW--HKSAWES--LRRAFPD-NGNGSRIVITTRNE 307 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~--~~~~~~~--l~~~l~~-~~~gsriivTTR~~ 307 (718)
.+.+-. ||||||+. ...+|.. +...+.. -..|..+||||...
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344333 89999994 3344432 3332221 23566799998743
No 122
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.66 E-value=0.00044 Score=73.85 Aligned_cols=155 Identities=10% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 159 GNEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
.-.++.|.+..+++|.+.+... -..++-|.++|++|+|||+||+++++. ....| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh---
Confidence 3456889999988888766421 123567899999999999999999984 33333 22211
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------------h----hhhHHHhhC
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------------S----AWESLRRAF 291 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------------~----~~~~l~~~l 291 (718)
..+ .....+. ....+...+.......+.+|++|+++.. . .+..+...+
T Consensus 213 -s~l----~~k~~ge-----------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 213 -SEF----VQKYLGE-----------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred -HHH----HHHhcch-----------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 111 1111100 0111222233333457889999998642 0 122333333
Q ss_pred CC--CCCCcEEEEEecchhhhhh--cC--CCCceeeccCCCHHhHHHHHHhhhC
Q 047642 292 PD--NGNGSRIVITTRNEPVAMI--TD--EKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 292 ~~--~~~gsriivTTR~~~v~~~--~~--~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.. ...+..||.||...+.... .. -....++++..+.++..++|..+.-
T Consensus 277 d~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 277 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred hccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 22 2245678888876654321 11 1225678888888888888876653
No 123
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.66 E-value=0.00025 Score=70.40 Aligned_cols=136 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCc
Q 047642 164 VGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPK 243 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~ 243 (718)
.|.++.....+..+.........+.|+|..|+|||+||+.+++... ...+ ...+++..... ..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~--------- 84 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA--------- 84 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH---------
Confidence 3554444443333333223346788999999999999999998421 2222 23344322210 00
Q ss_pred ccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh--hhhHHHhhCCC-CCCCc-EEEEEecchhhhh--------
Q 047642 244 IEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS--AWESLRRAFPD-NGNGS-RIVITTRNEPVAM-------- 311 (718)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~-~~~gs-riivTTR~~~v~~-------- 311 (718)
+ .. ....-+||+||+.... .-+.+...+.. ...|. .+|+|++......
T Consensus 85 ------------------~-~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 85 ------------------F-DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred ------------------H-hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 0 01 1223478999997543 22234333332 12344 3666666433221
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
.+... ..+++.++++++-..++.+.
T Consensus 145 r~~~~-~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 145 RLGWG-LVYELKPLSDADKIAALKAA 169 (227)
T ss_pred HHhcC-eEEEecCCCHHHHHHHHHHH
Confidence 22111 57889999988766666543
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.65 E-value=0.0034 Score=63.14 Aligned_cols=197 Identities=15% Similarity=0.172 Sum_probs=112.1
Q ss_pred CCceeeccc---cHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHhcCccccCC----CceEEEEEecCCCCHHHH
Q 047642 160 NEQVVGFEE---NTKMLIKQLLKDE-QQRFVISILGMGGLGKTTLARKLVNSTDVKGG----FDCRAWVCVTQEYTTRDL 231 (718)
Q Consensus 160 ~~~~vGr~~---~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~ 231 (718)
.+.+||... .++++.++|..+. ....-+.|||.+|.|||++++.+....-.... --.++.|.....++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 445777544 3445555555542 34567999999999999999999874211110 013666778888999999
Q ss_pred HHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcC-ceEEEEEecCCCh-----hhhhHHH---hhCCCCCCCcEEEE
Q 047642 232 LQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEG-RRYLVVVDDIWHK-----SAWESLR---RAFPDNGNGSRIVI 302 (718)
Q Consensus 232 l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~---~~l~~~~~gsriiv 302 (718)
...|+.+++.+... ..+...+.......|+. +--+||+|++.+. ..-..+. ..+.+.-.=+-|.|
T Consensus 113 Y~~IL~~lgaP~~~------~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 113 YSAILEALGAPYRP------RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HHHHHHHhCcccCC------CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 99999999986532 22334455555555644 3448899999763 1112222 23322223455666
Q ss_pred EecchhhhhhcC----CCCceeeccCCCHHh-HHHHHHhh--hCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 303 TTRNEPVAMITD----EKNFVYKLRFLNQEE-SWKLFCKK--AFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 303 TTR~~~v~~~~~----~~~~~~~l~~L~~~e-s~~Lf~~~--af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
-|+.-.-+-..+ ....++.++.-..++ ...|+... +.+-... ++-...+++..|...+++
T Consensus 187 Gt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-----S~l~~~~la~~i~~~s~G 253 (302)
T PF05621_consen 187 GTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKP-----SNLASPELARRIHERSEG 253 (302)
T ss_pred ccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCHHHHHHHHHHcCC
Confidence 666443332111 111345565544443 34444322 1221111 233456788888888864
No 125
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.65 E-value=0.00033 Score=81.60 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=84.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccCCC-ceEEEEEecCCCCHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD---VKGGF-DCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|.. +.. .++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~----~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMG----SLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHH----HHh
Confidence 368999999999999887653 22456999999999999999988421 11111 2344421 111 111
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh-----------hhhhHHHhhCCCCCCC-cEEEEE
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK-----------SAWESLRRAFPDNGNG-SRIVIT 303 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~g-sriivT 303 (718)
....... +.++....+.+.+ ..++.+|++|+++.. +.-+.+...+. .| -++|-+
T Consensus 251 a~~~~~g----------~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~Iga 317 (731)
T TIGR02639 251 AGTKYRG----------DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGS 317 (731)
T ss_pred hhccccc----------hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEe
Confidence 1000000 1122222222222 346789999998732 11223333333 23 344544
Q ss_pred ecchhhhhhc------CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 304 TRNEPVAMIT------DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 304 TR~~~v~~~~------~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
|...+..... ......+++++++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4432221111 1112568999999999999998654
No 126
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00055 Score=76.81 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=93.7
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc--eEEEEEecCCCCHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD--CRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
-.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+..-...... ...+-. +..-..-+.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~----cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL----CGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc----CcccHHHHHHhc
Confidence 4579999999999999887653 345788999999999999999988421111110 000000 000000111111
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe-cchhh
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT-RNEPV 309 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT-R~~~v 309 (718)
.... .............+++...+ +.+ .+++-++|+|+++.. ...+.|...+..-..++++|++| ....+
T Consensus 98 g~h~-Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 98 GRHV-DVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCCC-ceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 1000 00000000111223322211 111 234557899999754 45677777776555567666555 43343
Q ss_pred hhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 310 AMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+......+++..++.++....+.+.+-
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~ 205 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAA 205 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 322222236789999999998888877653
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0006 Score=76.60 Aligned_cols=177 Identities=13% Similarity=0.169 Sum_probs=91.5
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE-ecCCCCHHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC-VTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~l~~i~~~ 238 (718)
-.++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+..-....++...|-. +...+..=..-+.+...
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3468998888888888776543 345688999999999999998887422111111001110 00000000011111000
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT-RNEPVAM 311 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT-R~~~v~~ 311 (718)
-. ..............+++...+... ..+++-++|+|+++.. ...+.|...+..-...+.+|++| +...+..
T Consensus 94 ~~-~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 94 TS-LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CC-CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 000000000011123332222111 2344557899999764 45777877777555556655444 4444433
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
........+++.+++.++....+.+.+
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHH
Confidence 322233679999999998777666544
No 128
>PRK10536 hypothetical protein; Provisional
Probab=97.64 E-value=0.0004 Score=68.30 Aligned_cols=132 Identities=12% Similarity=0.246 Sum_probs=75.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE--e--cCC--C---CHHH-
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC--V--TQE--Y---TTRD- 230 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~--v--s~~--~---~~~~- 230 (718)
..+.++......++.++.+. .+|.+.|.+|+|||+||.++..+.-..+.|+..+-+. + .+. | +..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 44678888888888888653 3999999999999999999887532234454333221 1 110 0 1111
Q ss_pred ---HHHHHHHHhcCCcccchHHhhhcCHHHHHHHH-----------HHHhcCce---EEEEEecCCChhhhhHHHhhCCC
Q 047642 231 ---LLQKTIKSFQKPKIEDLELMERMTEEDLELHL-----------YEFLEGRR---YLVVVDDIWHKSAWESLRRAFPD 293 (718)
Q Consensus 231 ---~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----------~~~L~~k~---~LlVLDdv~~~~~~~~l~~~l~~ 293 (718)
.+.-+...+..- ...+.+...+ ..+++++. -+||+|++.+.+. ..+...+-.
T Consensus 131 ~~p~~~pi~D~L~~~----------~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR 199 (262)
T PRK10536 131 FAPYFRPVYDVLVRR----------LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHHHH----------hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhh
Confidence 111111111110 0111111111 23566765 4999999987654 444445555
Q ss_pred CCCCcEEEEEecch
Q 047642 294 NGNGSRIVITTRNE 307 (718)
Q Consensus 294 ~~~gsriivTTR~~ 307 (718)
.+.+|++|+|--..
T Consensus 200 ~g~~sk~v~~GD~~ 213 (262)
T PRK10536 200 LGENVTVIVNGDIT 213 (262)
T ss_pred cCCCCEEEEeCChh
Confidence 67899999985433
No 129
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=1.4e-05 Score=90.97 Aligned_cols=122 Identities=21% Similarity=0.208 Sum_probs=61.8
Q ss_pred ceEEEEEecCCcccccccccccchhhh-hcccccEEeeccCCcc--cccccccccCCCcEEEecCccccccChhhccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTDSIG-KLIHLRYFGFKCNSLV--EFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQ 635 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~~i~-~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~ 635 (718)
.+|+.||+++...-.+ . .|..+| -||+|+.|.+++-.+. ++-.-..+++||..||+|+++++.+ .+|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~-~---W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-G---WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhc-c---HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 3455566655442110 1 333343 3456666666553332 1111223455666666666666666 45666666
Q ss_pred cceeeec-ccC-----cccCCCccccccccceecc-c--c-----chHHhcccCCCCeEEEeec
Q 047642 636 LRHLIAR-PLG-----HLQVSTLTNLQTLKYVNFQ-Q--W-----DAVDARNLINLQELEIREI 685 (718)
Q Consensus 636 L~~L~l~-~~~-----p~~~~~l~~L~~L~~~~~~-~--~-----~~~~l~~l~~L~~L~l~~~ 685 (718)
|+.|.++ ..+ ...+.+|++|+.|+++... . . -.+.-..|++|+.|+++++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 6666551 111 1234556666666655443 1 1 1122345788888888887
No 130
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.63 E-value=0.001 Score=72.23 Aligned_cols=132 Identities=23% Similarity=0.264 Sum_probs=75.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCC--ceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGF--DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
...+.|+|..|+|||+|++++++. +.... ..+++++ ..++...+...+.... .+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~~-----------~~~---- 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNNK-----------MEE---- 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcCC-----------HHH----
Confidence 456889999999999999999994 33332 2344554 3334445554443211 112
Q ss_pred HHHHhcCceEEEEEecCCChh---hh-hHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceeeccCCCH
Q 047642 262 LYEFLEGRRYLVVVDDIWHKS---AW-ESLRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKNFVYKLRFLNQ 327 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~~---~~-~~l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~~~~~l~~L~~ 327 (718)
+.+.+.+ .-+|||||++... .+ +.+...+.. ...|..+|+||.... +...+... ..+.+++.+.
T Consensus 193 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-~~v~i~~pd~ 270 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG-LVVDIEPPDL 270 (405)
T ss_pred HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC-eEEEeCCCCH
Confidence 2222322 3388999997431 11 223333321 123556888876422 11222221 4688899999
Q ss_pred HhHHHHHHhhhCC
Q 047642 328 EESWKLFCKKAFP 340 (718)
Q Consensus 328 ~es~~Lf~~~af~ 340 (718)
++-.+++.+++-.
T Consensus 271 ~~r~~il~~~~~~ 283 (405)
T TIGR00362 271 ETRLAILQKKAEE 283 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 131
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=7.5e-05 Score=78.35 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=41.6
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-ccccccccccchhhhhcccccEEeeccC-Ccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRLTDSIGKLIHLRYFGFKCN-SLVEFPRSI 607 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~p~~i~~l~~L~~L~l~~~-~l~~lp~~i 607 (718)
+.+++.|.+.++... .+|.. ..+|+.|.+++|. ++ . +|..+. .+|++|++++| .+..+|++
T Consensus 51 ~~~l~~L~Is~c~L~-----sLP~L---P~sLtsL~Lsnc~nLt---s---LP~~LP--~nLe~L~Ls~Cs~L~sLP~s- 113 (426)
T PRK15386 51 ARASGRLYIKDCDIE-----SLPVL---PNELTEITIENCNNLT---T---LPGSIP--EGLEKLTVCHCPEISGLPES- 113 (426)
T ss_pred hcCCCEEEeCCCCCc-----ccCCC---CCCCcEEEccCCCCcc---c---CCchhh--hhhhheEccCcccccccccc-
Confidence 566677777666432 22211 2346666776643 32 3 555442 46777777665 56666643
Q ss_pred cccCCCcEEEecCcc---ccccChh
Q 047642 608 GNLQCLKTMVASGNS---CWKLPSQ 629 (718)
Q Consensus 608 ~~l~~L~~L~l~~~~---i~~lp~~ 629 (718)
|+.|+++++. +..+|.+
T Consensus 114 -----Le~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 114 -----VRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred -----cceEEeCCCCCcccccCcch
Confidence 4555555543 3455554
No 132
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=1e-05 Score=69.86 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCceEEEEEecCCcccccccccccchhhhh-cccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccc
Q 047642 557 SLRFLRVLDLEDTRIEHSGKVLRLTDSIGK-LIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQ 635 (718)
Q Consensus 557 ~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~-l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~ 635 (718)
....|...+|++|.+. + +|+.+.. .+.++.|+|++|.|+.+|..+..++.|+.|+++.|.+...|.-|..|.+
T Consensus 51 ~~~el~~i~ls~N~fk---~---fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK---K---FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred CCceEEEEecccchhh---h---CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence 3344444444444444 3 4444322 2244444444444444444444444444444444444444444444444
Q ss_pred cceeee
Q 047642 636 LRHLIA 641 (718)
Q Consensus 636 L~~L~l 641 (718)
|-.|+.
T Consensus 125 l~~Lds 130 (177)
T KOG4579|consen 125 LDMLDS 130 (177)
T ss_pred HHHhcC
Confidence 444433
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.0015 Score=73.99 Aligned_cols=190 Identities=13% Similarity=0.149 Sum_probs=101.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++||-+..++.|..++..+. -...+.++|..|+||||+|+.+.+.......+. ....++.-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 468999999998888887653 345678999999999999999987421111100 0001111122222222111
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc-hhhhhh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN-EPVAMI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~-~~v~~~ 312 (718)
.... ..........+++.. +.+.+ .+++-++|+|+++.. +..+.|...+..-...+.+|++|.+ ..+...
T Consensus 89 ~d~~-~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVI-EMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEE-EEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 1000 000000112222221 22211 245668999999754 4577777777655556666666543 333332
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
.......+++..++.++....+...+...+.. .+ .+....|++.+++
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-----i~---~eal~~La~~s~G 213 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-----LE---PGALEAIARAATG 213 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-----CC---HHHHHHHHHHcCC
Confidence 22222567888899988888777665432211 11 2345566666653
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.0015 Score=71.17 Aligned_cols=133 Identities=22% Similarity=0.220 Sum_probs=78.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCC-c-eEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGF-D-CRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
..-+.|+|.+|+|||+||+++++. +...+ . .++|++. .+++.++...+.... .++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~-----------~~~---- 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK-----------LNE---- 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhccc-----------HHH----
Confidence 445899999999999999999994 33332 2 3456543 345556555553211 111
Q ss_pred HHHHhcCceEEEEEecCCCh---hhh-hHHHhhCCC-CCCCcEEEEEec-chhhh--------hhcCCCCceeeccCCCH
Q 047642 262 LYEFLEGRRYLVVVDDIWHK---SAW-ESLRRAFPD-NGNGSRIVITTR-NEPVA--------MITDEKNFVYKLRFLNQ 327 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gsriivTTR-~~~v~--------~~~~~~~~~~~l~~L~~ 327 (718)
+.+.+..+.-+||+||+... ..+ +.+...+.. ...|..||+||. ...-. ..+..+ .++.+++.+.
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g-l~v~i~~pd~ 265 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDE 265 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC-ceEeeCCCCH
Confidence 22333334558999999743 111 223322221 123457888874 33221 122222 4788999999
Q ss_pred HhHHHHHHhhhCC
Q 047642 328 EESWKLFCKKAFP 340 (718)
Q Consensus 328 ~es~~Lf~~~af~ 340 (718)
+.-.+++.+++-.
T Consensus 266 e~r~~IL~~~~~~ 278 (440)
T PRK14088 266 ETRKKIARKMLEI 278 (440)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888753
No 135
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00098 Score=70.02 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=96.6
Q ss_pred CCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC--CCceEEEEEecCCCCHHHHHHHHH
Q 047642 159 GNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG--GFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
....++|-++..+.+...+..+. -...+.|+|+.|+||||+|..+.+..--.. .+... ........-...+.+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 44578999999999999887653 356789999999999999998887421110 01110 0010111111222222
Q ss_pred HHhcCCcccch--H--H-----hhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEE
Q 047642 237 KSFQKPKIEDL--E--L-----MERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRI 300 (718)
Q Consensus 237 ~~l~~~~~~~~--~--~-----~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsri 300 (718)
..- .+....+ + . ......+++. .+.+.+ .+++-++|+|+++.. ...+.+...+..-.....+
T Consensus 97 ~~~-hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 97 QGA-HPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred cCC-CCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 211 0000000 0 0 0112234432 344444 346678999999854 4456666666543344454
Q ss_pred -EEEecchhhhhhcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 301 -VITTRNEPVAMITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 301 -ivTTR~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
++|++...+..........+++.+++.++..+.+...
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 4444443343222233368999999999999998874
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.59 E-value=0.00033 Score=68.33 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=73.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
..+.|+|++|+|||+|++.+.+... . .++. ..+. . + +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------------~-~-------~ 81 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------------N-E-------E 81 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------------c-h-------h
Confidence 5689999999999999999888421 1 1111 0000 0 0 0
Q ss_pred HhcCceEEEEEecCCChhhhhHHHhhCCC-CCCCcEEEEEecchhh-------hhhcCCCCceeeccCCCHHhHHHHHHh
Q 047642 265 FLEGRRYLVVVDDIWHKSAWESLRRAFPD-NGNGSRIVITTRNEPV-------AMITDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~~~~~~~l~~~l~~-~~~gsriivTTR~~~v-------~~~~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
.. +..-++++||+....+ ..+...+.. ...|..||+|++.... ...+... .++++++++.++-..++.+
T Consensus 82 ~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 82 IL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIFK 158 (214)
T ss_pred HH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHHH
Confidence 01 1234788999974321 122222211 1346789999885432 2233332 5799999999998888877
Q ss_pred hhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 337 KAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 337 ~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
.+....- .--+++..-|++++.
T Consensus 159 ~~~~~~l--------~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 159 HFSISSV--------TISRQIIDFLLVNLP 180 (214)
T ss_pred HHHHcCC--------CCCHHHHHHHHHHcc
Confidence 6642211 111456666777764
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0011 Score=73.78 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=90.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+..-....... ..++.=..-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 467898877777777776542 3467889999999999999999884221111000 00000001111111000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHH-----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc-hhhhhh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEF-----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN-EPVAMI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~-~~v~~~ 312 (718)
..............+++. .+.+. ..+++-+||+|+++.. +.++.|...+..-.....+|++|.+ ..+...
T Consensus 88 -pDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 -VDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred -CceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 000000000001112211 12221 2356678999999754 4567777777543345556665544 444322
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.......+++.+++.++..+.+...+..
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 2222257899999999988888775543
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.57 E-value=0.00047 Score=74.18 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=88.2
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
.++.|.++.+++|.+.+.-. -....-|.++|++|+|||++|+.+++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 45789999999988877421 123456889999999999999999994 44444 222111
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh----------------hhhHHHhhCCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS----------------AWESLRRAFPD 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~ 293 (718)
.+ .....+. ....+...+.....+.+.+|+||+++... .+..+...+..
T Consensus 252 eL----~~k~~Ge-----------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 252 EL----IQKYLGD-----------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred hh----hhhhcch-----------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 11 1111100 01112222222334567889999975320 01122222221
Q ss_pred --CCCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 294 --NGNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 294 --~~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
...+-+||+||...+..... +-....+++...+.++..++|..++..
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 13356788888766543321 111257889999999999999877643
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0017 Score=73.40 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=92.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc---------------------cCCCceEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDV---------------------KGGFDCRAW 219 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---------------------~~~F~~~~w 219 (718)
.+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+...... ..+|+. ..
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ 94 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HE 94 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EE
Confidence 468999999999999887653 3467889999999999999887773211 012221 11
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCC
Q 047642 220 VCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPD 293 (718)
Q Consensus 220 v~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~ 293 (718)
+..+... ..+++...+.+. ..+++-++|+|+++.. +.++.|...+..
T Consensus 95 ld~~~~~---------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 95 LDAASNN---------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred ecccccC---------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 1111111 112222111110 1234558899998754 467778877776
Q ss_pred CCCCcEEEE-EecchhhhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 NGNGSRIVI-TTRNEPVAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 ~~~gsriiv-TTR~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
-..++.+|+ ||+...+.........++++.+++.++....+...+-
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHH
Confidence 555666655 4454455443333336899999999998888876553
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.00035 Score=63.07 Aligned_cols=89 Identities=19% Similarity=0.029 Sum_probs=47.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
..+.|+|++|+||||+|+.+... ........+++..+........... ........ ...........+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-------ASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-------CCCCHHHHHHHHHH
Confidence 47899999999999999999984 3332223455544433322221111 00000000 01111222233334
Q ss_pred HhcCc-eEEEEEecCCChhh
Q 047642 265 FLEGR-RYLVVVDDIWHKSA 283 (718)
Q Consensus 265 ~L~~k-~~LlVLDdv~~~~~ 283 (718)
..... ..+|++|+++....
T Consensus 73 ~~~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 73 LARKLKPDVLILDEITSLLD 92 (148)
T ss_pred HHHhcCCCEEEEECCcccCC
Confidence 44433 48999999987643
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=0.00029 Score=63.07 Aligned_cols=21 Identities=52% Similarity=0.621 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 047642 187 ISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~ 207 (718)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999995
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0015 Score=72.40 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=91.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCC--ceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGF--DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
..+.|+|..|+|||.|++++++. ....+ ..+++++ ..+++.++...+.... .+ .+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~~-----------~~----~f 371 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDGK-----------GD----SF 371 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhcc-----------HH----HH
Confidence 45899999999999999999994 33222 2345554 3344444444332211 11 12
Q ss_pred HHHhcCceEEEEEecCCCh---hhhh-HHHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceeeccCCCHH
Q 047642 263 YEFLEGRRYLVVVDDIWHK---SAWE-SLRRAFPD-NGNGSRIVITTRNE---------PVAMITDEKNFVYKLRFLNQE 328 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~~---~~~~-~l~~~l~~-~~~gsriivTTR~~---------~v~~~~~~~~~~~~l~~L~~~ 328 (718)
++.+.. -=+|||||+... +.|+ .+...+.. ...|..|||||+.. .+...+... .+++++..+.+
T Consensus 372 ~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~E 449 (617)
T PRK14086 372 RRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELE 449 (617)
T ss_pred HHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHH
Confidence 233332 347889999743 2232 23332321 13356788888763 122333333 67899999999
Q ss_pred hHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHh
Q 047642 329 ESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHL 380 (718)
Q Consensus 329 es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~ 380 (718)
.-.+++.+++-..... .+ +++..-|+.++. .+..+.+.++.++
T Consensus 450 tR~aIL~kka~~r~l~-----l~---~eVi~yLa~r~~-rnvR~LegaL~rL 492 (617)
T PRK14086 450 TRIAILRKKAVQEQLN-----AP---PEVLEFIASRIS-RNIRELEGALIRV 492 (617)
T ss_pred HHHHHHHHHHHhcCCC-----CC---HHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 9999999887543321 11 345566666653 2334444444443
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.001 Score=75.18 Aligned_cols=161 Identities=13% Similarity=0.211 Sum_probs=89.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC-C---ceEEEE-EecCCCCHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG-F---DCRAWV-CVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F---~~~~wv-~vs~~~~~~~~l~~i 235 (718)
.+++|-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+....-.... . .|.... +....++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie----- 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE----- 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-----
Confidence 468999999999998887653 3567789999999999999999873111110 0 000000 0000000000
Q ss_pred HHHhcCCcccchHHhhhcCHHH---HHHHHHHH-hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEE-EEecchh
Q 047642 236 IKSFQKPKIEDLELMERMTEED---LELHLYEF-LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIV-ITTRNEP 308 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~---l~~~l~~~-L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrii-vTTR~~~ 308 (718)
+.. ......++ +...+... ..+++-++|+|+++.. ..++.|...+..-.....+| +||+...
T Consensus 92 ---ida--------asn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 92 ---MDA--------ASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred ---Eec--------cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 000 00011222 22222111 1355668899999753 46777777776544455544 4554444
Q ss_pred hhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 309 VAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 309 v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+..........+++.+++.++-.+.+...+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHH
Confidence 443222223679999999999887777644
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.51 E-value=0.00045 Score=75.05 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=76.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
..-+.|+|+.|+|||+|++++++. +......+++++ ...+...+...+.... ...++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~~---------------~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSGE---------------MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcch---------------HHHHH
Confidence 356889999999999999999994 322223344544 2334444444443210 01133
Q ss_pred HHhcCceEEEEEecCCChhh----hhHHHhhCCC-CCCCcEEEEEecch---------hhhhhcCCCCceeeccCCCHHh
Q 047642 264 EFLEGRRYLVVVDDIWHKSA----WESLRRAFPD-NGNGSRIVITTRNE---------PVAMITDEKNFVYKLRFLNQEE 329 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~~~----~~~l~~~l~~-~~~gsriivTTR~~---------~v~~~~~~~~~~~~l~~L~~~e 329 (718)
..+. ..-+|++||+..... .+.+...+.. ...|..||+||... .+...+..+ ..+.+++++.++
T Consensus 198 ~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G-l~~~l~~pd~e~ 275 (445)
T PRK12422 198 QFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG-IAIPLHPLTKEG 275 (445)
T ss_pred HHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC-eEEecCCCCHHH
Confidence 3333 344888899865321 1222222221 12356788888542 122233222 578899999999
Q ss_pred HHHHHHhhhCC
Q 047642 330 SWKLFCKKAFP 340 (718)
Q Consensus 330 s~~Lf~~~af~ 340 (718)
-..++.+++-.
T Consensus 276 r~~iL~~k~~~ 286 (445)
T PRK12422 276 LRSFLERKAEA 286 (445)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 145
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.5e-05 Score=68.85 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=73.6
Q ss_pred cCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccC
Q 047642 532 RLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQ 611 (718)
Q Consensus 532 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~ 611 (718)
.|....+.+|.+. ..++.+-.+++.++.|+|++|.++ . +|..+..++.|+.|+++.|.+...|.-|..|.
T Consensus 54 el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neis---d---vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 54 ELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEIS---D---VPEELAAMPALRSLNLRFNPLNAEPRVIAPLI 123 (177)
T ss_pred eEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhh---h---chHHHhhhHHhhhcccccCccccchHHHHHHH
Confidence 3445566666552 244455567778999999999999 6 99999999999999999999999999999999
Q ss_pred CCcEEEecCccccccChh
Q 047642 612 CLKTMVASGNSCWKLPSQ 629 (718)
Q Consensus 612 ~L~~L~l~~~~i~~lp~~ 629 (718)
+|-.|+..+|.+..+|-.
T Consensus 124 ~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENARAEIDVD 141 (177)
T ss_pred hHHHhcCCCCccccCcHH
Confidence 999999999998888876
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0019 Score=70.97 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=87.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-C------------------CCceEEEEE
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK-G------------------GFDCRAWVC 221 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~------------------~F~~~~wv~ 221 (718)
.+++|-+.-++.+..++..+. -.....++|+.|+||||+|+.+....... . .|....++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid 94 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID 94 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe
Confidence 468899999999998887653 34567889999999999999987731100 0 011111111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCc
Q 047642 222 VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGS 298 (718)
Q Consensus 222 vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs 298 (718)
.+...... +...+...+.. -..+++-++|+|+++.. ...+.+...+..-....
T Consensus 95 aas~~gvd------------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 95 AASNRGID------------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred CccCCCHH------------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 10000000 01111111111 11356679999999754 45677777776554455
Q ss_pred EEEEEe-cchhhhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 299 RIVITT-RNEPVAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 299 riivTT-R~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+|++| +...+..........+.+.+++.++-...+...+
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence 555555 3333332222222568888898888777666654
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.0013 Score=72.39 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=76.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCC--ceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGF--DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
..-+.|+|.+|+|||+||+++.+. +..++ ..+++++. .++...+...+... ..+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----------~~~~---- 204 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----------TMEE---- 204 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----------cHHH----
Confidence 456899999999999999999994 44433 22445542 23344444444221 1112
Q ss_pred HHHHhcCceEEEEEecCCCh---hh-hhHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceeeccCCCH
Q 047642 262 LYEFLEGRRYLVVVDDIWHK---SA-WESLRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKNFVYKLRFLNQ 327 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~---~~-~~~l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~~~~~l~~L~~ 327 (718)
+.+.++ +.-+|||||++.. +. .+.+...+.. ...|..||+||.... +...+... .++++++.+.
T Consensus 205 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g-l~v~i~~pd~ 282 (450)
T PRK00149 205 FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG-LTVDIEPPDL 282 (450)
T ss_pred HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC-eeEEecCCCH
Confidence 223333 3448999999642 11 1233332221 123456888876542 12233222 5789999999
Q ss_pred HhHHHHHHhhhCC
Q 047642 328 EESWKLFCKKAFP 340 (718)
Q Consensus 328 ~es~~Lf~~~af~ 340 (718)
++-.+++.+++-.
T Consensus 283 ~~r~~il~~~~~~ 295 (450)
T PRK00149 283 ETRIAILKKKAEE 295 (450)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 148
>CHL00176 ftsH cell division protein; Validated
Probab=97.46 E-value=0.002 Score=73.01 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=87.3
Q ss_pred CCceeeccccHHHHHHHH---hcCC-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQL---LKDE-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.++.++++.+.+ .... ...+-|.++|++|+|||+||+.+++. .... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----
Confidence 346888877776665443 3221 12456899999999999999999984 2222 3333211
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------------hh----hhHHHhhCCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------------SA----WESLRRAFPD 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------------~~----~~~l~~~l~~ 293 (718)
++ .....+ .....+...+.......+.+|+|||++.. .. +..+...+..
T Consensus 251 ~f----~~~~~g-----------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg 315 (638)
T CHL00176 251 EF----VEMFVG-----------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315 (638)
T ss_pred HH----HHHhhh-----------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc
Confidence 11 010000 01122333344445667899999999632 11 2333333332
Q ss_pred --CCCCcEEEEEecchhhhhh-c---CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 294 --NGNGSRIVITTRNEPVAMI-T---DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 294 --~~~gsriivTTR~~~v~~~-~---~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
...+-.||.||...+.... + +-....+.++..+.++-.++++.++-.
T Consensus 316 ~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 316 FKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred ccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 2345567777766543221 1 112256788888888888888877643
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0011 Score=72.21 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC----Cce--------------EEEEE
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG----FDC--------------RAWVC 221 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~--------------~~wv~ 221 (718)
-.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+..--... -.| .-|+.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 3468999999998888886643 2467889999999999999988773211100 000 00111
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHH---HHHHH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCC
Q 047642 222 VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLE---LHLYE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNG 295 (718)
Q Consensus 222 vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~---~~l~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 295 (718)
+.... ....+++. ..+.. -..+++-++|+|+++.. +..+.|...+..-.
T Consensus 95 i~g~~-------------------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~ 149 (451)
T PRK06305 95 IDGAS-------------------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (451)
T ss_pred eeccc-------------------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC
Confidence 11000 00011111 11110 11355668899998743 45666777776544
Q ss_pred CCcEEEEEecc-hhhhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 296 NGSRIVITTRN-EPVAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 296 ~gsriivTTR~-~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+..+|++|.. ..+..........+++.++++++-...+...+
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH
Confidence 56666666633 33322222222578999999999887777654
No 150
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=5.8e-05 Score=70.64 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=28.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-CCCceEEE
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVK-GGFDCRAW 219 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 219 (718)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999965443 56777776
No 151
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.43 E-value=0.00072 Score=79.47 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=83.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC------CceEEE-EEecCCCCHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG------FDCRAW-VCVTQEYTTRDLLQ 233 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~w-v~vs~~~~~~~~l~ 233 (718)
..+|||++++.+++..|.... ..-+.++|.+|+||||+|+.+... +... ....+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~--------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL--------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh---------
Confidence 468999999999999987764 224569999999999999999984 2211 122333 22111
Q ss_pred HHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCChh-------hhh---HHHhhCCCCCCCcEEEE
Q 047642 234 KTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHKS-------AWE---SLRRAFPDNGNGSRIVI 302 (718)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~~-------~~~---~l~~~l~~~~~gsriiv 302 (718)
+.. +... ...-.+.+...+.+.- .+++.+|++|++.... .-+ -+...+.. ..-++|-
T Consensus 254 -l~a---g~~~------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Ig 321 (852)
T TIGR03345 254 -LQA---GASV------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIA 321 (852)
T ss_pred -hhc---cccc------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEE
Confidence 000 0000 0000112222222221 2468999999986431 111 23333321 1345666
Q ss_pred EecchhhhhhcC------CCCceeeccCCCHHhHHHHHHhh
Q 047642 303 TTRNEPVAMITD------EKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 303 TTR~~~v~~~~~------~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
||...+...... .....+.+++++.++..+++...
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 665433211111 11257999999999999997543
No 152
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.41 E-value=0.00019 Score=74.14 Aligned_cols=279 Identities=17% Similarity=0.107 Sum_probs=160.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHH-HHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKT-IKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i-~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
..+.+.++|.|||||||++-.+.. +..-|..-+|...-..+.....+.-+ ...++-... .-+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---------~g~~~~~~ 80 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---------PGDSAVDT 80 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---------cchHHHHH
Confidence 367999999999999999999987 66778665555444444444444444 333443321 11233445
Q ss_pred HHHHhcCceEEEEEecCCChh-hhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCCCceeeccCCCHH-hHHHHHHhhhC
Q 047642 262 LYEFLEGRRYLVVVDDIWHKS-AWESLRRAFPDNGNGSRIVITTRNEPVAMITDEKNFVYKLRFLNQE-ESWKLFCKKAF 339 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~~-~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~~~~~~l~~L~~~-es~~Lf~~~af 339 (718)
+......++.++|+||..+.. .-..+...+..+...-.|+.|+|..-... + ...+.+.+|+.. ++.++|...+.
T Consensus 81 ~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---g-e~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 81 LVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---G-EVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---c-cccccCCccccCCchhHHHHHHHH
Confidence 667778899999999986542 22233334444445567888888544322 1 256788888776 68999887764
Q ss_pred CCCCCCCcCCCCchHHHHHHHHHHHhcc--------------CC--------hhHHHHHHHHhhccccCCCCchHhHHHh
Q 047642 340 PDTADGQATVCSPGLEKLGREMVEKCRE--------------EI--------PHEWHTVKNHLWWHLTQDSDHVSPILAL 397 (718)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~~~~I~~~c~~--------------~~--------~~~w~~~~~~~~~~~~~~~~~i~~~l~~ 397 (718)
....+-. ....-...+.+|-++..+ -. .+.|..+-+. ............+.+.+
T Consensus 157 ~~~~~f~---l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~w 232 (414)
T COG3903 157 LVALSFW---LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDW 232 (414)
T ss_pred Hhcccee---ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhh
Confidence 3222100 011111223333332220 00 1111111111 00000123456778999
Q ss_pred cccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHHhhccccchhhccCCcEeEEEeC
Q 047642 398 SYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELIDRSMIQIAERYLDKVKTCRIH 477 (718)
Q Consensus 398 sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~mH 477 (718)
||--|....+--|-.++.|...+.-. ...|.+-|-.. ....-....-+..+++.+++..... .....|+.-
T Consensus 233 s~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~---~~~~y~~~~a~~ll~~kslv~a~~~--~~~a~~Rl~ 303 (414)
T COG3903 233 SYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADV---DVPRYLVLLALTLLVDKSLVVALDL--LGRARYRLL 303 (414)
T ss_pred hhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc---ccchHHHHHHHHHHhhccchhhhhh--hhHHHHHHH
Confidence 99999999999999999998887544 44565555320 0112234445677888888865432 112356666
Q ss_pred HHHHHHHHHhhhh
Q 047642 478 DLIRELAIKKARA 490 (718)
Q Consensus 478 dlv~d~a~~~~~~ 490 (718)
+-+|.|+..+..+
T Consensus 304 eT~r~YalaeL~r 316 (414)
T COG3903 304 ETGRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766554
No 153
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.40 E-value=0.0032 Score=70.17 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCCceeeccccHHHHHHHHh---cC-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 159 GNEQVVGFEENTKMLIKQLL---KD-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.-.+++|.++.++++.+.+. .. ....+-+.++|++|+|||+||+.+++. ....| +.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~~-----~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVPF-----FSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCe-----eeccH----
Confidence 34568898887766655442 21 123446889999999999999999984 22222 22221
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------------hhh----hHHHhhCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------------SAW----ESLRRAFP 292 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------------~~~----~~l~~~l~ 292 (718)
.++ .....+ .....+...+.......+.+|+|||++.. +.+ ..+...+.
T Consensus 122 ~~~----~~~~~g-----------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 122 SDF----VEMFVG-----------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred HHH----HHHHhc-----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 111 111110 11122333334444456789999999642 111 22222222
Q ss_pred C--CCCCcEEEEEecchhhhh-hc---CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 293 D--NGNGSRIVITTRNEPVAM-IT---DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 293 ~--~~~gsriivTTR~~~v~~-~~---~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
. ...+-.||.||....... .+ +-....++++..+.++-.++|..+.-.
T Consensus 187 ~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 187 GFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred cccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 1 223445666776543211 11 112256888888888888888876543
No 154
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.40 E-value=0.0078 Score=70.71 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=37.4
Q ss_pred CceeeccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|.++-+++|.+++... .....++.++|++|+|||++|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999988876422 223458999999999999999999984
No 155
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.37 E-value=0.0021 Score=74.68 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCceeeccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 160 NEQVVGFEENTKMLIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+.+.+|.++-+++|+++|... .....++.++|++|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999888632 12345899999999999999999997
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.35 E-value=0.00087 Score=79.09 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=83.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccCCC-ceEEEEEecCCCCHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD---VKGGF-DCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~~F-~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
..++||+++++++++.|.... ..-+.++|++|+|||++|..++.... +.... ...+|.- +... ++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~----l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGL----LL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHH----Hh
Confidence 358999999999999997654 22446999999999999999988421 11111 2345531 1111 11
Q ss_pred HHhcCCcccchHHhhhcCHHH-HHHHHHHHhcCceEEEEEecCCChh---------hhh-HHHhhCCCCCCCcEEEEEec
Q 047642 237 KSFQKPKIEDLELMERMTEED-LELHLYEFLEGRRYLVVVDDIWHKS---------AWE-SLRRAFPDNGNGSRIVITTR 305 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~L~~k~~LlVLDdv~~~~---------~~~-~l~~~l~~~~~gsriivTTR 305 (718)
. +.... . +.++ +...+.+.-..++.+|++|++.... +.. -+...+. .+ .-++|.+|.
T Consensus 248 a---g~~~~------g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg-~l~~IgaTt 315 (821)
T CHL00095 248 A---GTKYR------G-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RG-ELQCIGATT 315 (821)
T ss_pred c---cCCCc------c-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CC-CcEEEEeCC
Confidence 1 11100 0 1112 2222222223568899999995320 112 2222332 12 235555555
Q ss_pred chhhhhh------cCCCCceeeccCCCHHhHHHHHHh
Q 047642 306 NEPVAMI------TDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 306 ~~~v~~~------~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
..+.... .......+.++..+.++...++..
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 5443221 112225678888888888877764
No 157
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=1.5e-05 Score=77.85 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=93.4
Q ss_pred eeEEEeecCCccccccccc---cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-ccccccccccchhhhh
Q 047642 511 TRRQVIPSGNMKYVSLVHF---YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRLTDSIGK 586 (718)
Q Consensus 511 ~r~l~l~~~~~~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~p~~i~~ 586 (718)
..++.++...+.......+ +.+|+.|.+-++.... .+-..+.+-.+|+.|+|+.+. ++. .- +---+.+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~--n~--~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTE--NA--LQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc----HHHHHHhccccceeeccccccccch--hH--HHHHHHh
Confidence 4556666433333222222 6777777777766532 222334555677888887765 431 10 1122467
Q ss_pred cccccEEeeccCCccc-----ccccccccCCCcEEEecCc--c--ccccChhhccccccceeee--cccCcc----cCCC
Q 047642 587 LIHLRYFGFKCNSLVE-----FPRSIGNLQCLKTMVASGN--S--CWKLPSQISKLHQLRHLIA--RPLGHL----QVST 651 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~--~--i~~lp~~i~~L~~L~~L~l--~~~~p~----~~~~ 651 (718)
++.|..|+|+++.+.. +-..|+ .+|..|+|+|+ + .+.+..-..+.++|.+|++ +..+.+ .+.+
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 7778888887766541 111222 36777788776 2 2233333456778888887 222222 3566
Q ss_pred ccccccccceeccccchH---HhcccCCCCeEEEeec
Q 047642 652 LTNLQTLKYVNFQQWDAV---DARNLINLQELEIREI 685 (718)
Q Consensus 652 l~~L~~L~~~~~~~~~~~---~l~~l~~L~~L~l~~~ 685 (718)
+.-|++|++..|....|. ++...+.|..|++.++
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 777777777777654454 3456677778887777
No 158
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.002 Score=72.59 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=88.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+.+..--....+. ..++.-..-..|...-
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 3468999988888888887653 3457789999999999999998874211111000 0000000001110000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe-cchhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT-RNEPVAM 311 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT-R~~~v~~ 311 (718)
...............+++ +.+.+.+ .+++-++|+|+++.. ...+.|...+..-.....+|++| ....+..
T Consensus 87 -~~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 87 -SVDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred -CCCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000000000000111221 1122221 244557889999754 45677777776544556665544 4444443
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
........+++.+++.++....+...+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHH
Confidence 322222567888898888776666543
No 159
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0037 Score=68.85 Aligned_cols=170 Identities=14% Similarity=0.187 Sum_probs=90.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++||-+...+.+...+..+. -..+..++|+.|+||||+|+.+.+..--...-+. ..+..-..-..+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 468998888888888886653 3457789999999999999987763110000000 00000000000000000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHH--H--hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 047642 241 KPKIEDLELMERMTEEDLELHLYE--F--LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~--~--L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~ 313 (718)
. .............+++...+.. + ..+++-++|+|+++.. +..+.|...+..-...+++|++|.+. .+....
T Consensus 86 ~-dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI 164 (535)
T PRK08451 86 I-DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164 (535)
T ss_pred C-eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHH
Confidence 0 0000000000112222222211 0 1245568899999754 45677777776555567777766553 222212
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
......+++.+++.++..+.+...+-
T Consensus 165 ~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred HhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 22236789999999998887766543
No 160
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=8.4e-05 Score=84.67 Aligned_cols=126 Identities=24% Similarity=0.269 Sum_probs=90.6
Q ss_pred hcccccEEeeccCCc-c-ccccccc-ccCCCcEEEecCcccc--ccChhhccccccceeeec-c--cCcccCCCcccccc
Q 047642 586 KLIHLRYFGFKCNSL-V-EFPRSIG-NLQCLKTMVASGNSCW--KLPSQISKLHQLRHLIAR-P--LGHLQVSTLTNLQT 657 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l-~-~lp~~i~-~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~-~--~~p~~~~~l~~L~~ 657 (718)
.-.+|++|++++... . .=|..++ .|++|++|.+++-.+. ++-.-..++++|..|+++ . ....++++|++|+.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 346899999998443 2 2234454 4899999999875443 333445688999999993 2 22357899999999
Q ss_pred ccceecc---ccchHHhcccCCCCeEEEeec-c---ccH----HHHhhccCCCCeEEEeeCCCCC
Q 047642 658 LKYVNFQ---QWDAVDARNLINLQELEIREI-P---YTN----MNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 658 L~~~~~~---~~~~~~l~~l~~L~~L~l~~~-~---~~~----~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
|.+.+.. ......+.+|++|+.||+|.. . ..+ .+.-..|++|+.|+.|+....+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9998887 356778999999999999987 1 111 2233458999999999876543
No 161
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.31 E-value=8.5e-06 Score=88.43 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=65.6
Q ss_pred hhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccCh
Q 047642 550 HLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPS 628 (718)
Q Consensus 550 ~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~ 628 (718)
..+..+.-++.|+.|||++|+++ + . ..+..|++|+.|||+.|.+..+|.- ...+ .|+.|++++|.+++|-
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~---~---v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFT---K---V-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR- 248 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhh---h---h-HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-
Confidence 34455666677777788887777 3 3 3567777778888887777777742 1222 3777777777777664
Q ss_pred hhccccccceeeecccCccc------CCCccccccccceecc
Q 047642 629 QISKLHQLRHLIARPLGHLQ------VSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 629 ~i~~L~~L~~L~l~~~~p~~------~~~l~~L~~L~~~~~~ 664 (718)
+|.+|.+|++|+++..+..+ +..|..|..|.+-+|.
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 46777777777763222211 3344455555555554
No 162
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.00058 Score=65.31 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=36.8
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE
Q 047642 165 GFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC 221 (718)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 221 (718)
.+..+-...++.|.. ..++.+.|++|.|||.||.+..-+.-..++|+..+++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 455566677777773 34999999999999999998887654568888887763
No 163
>PRK12377 putative replication protein; Provisional
Probab=97.28 E-value=0.00074 Score=67.09 Aligned_cols=37 Identities=24% Similarity=0.131 Sum_probs=28.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
...+.|+|.+|+|||+||.++.+. +......++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~ 137 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV 137 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH
Confidence 457899999999999999999995 3333344566654
No 164
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.27 E-value=0.0012 Score=64.68 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=30.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
.-.++|+|..|+|||||+..+..+ ....|..+.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 346889999999999999999984 7788977776644
No 165
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00012 Score=71.75 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=29.5
Q ss_pred HhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEeeCCCCCc
Q 047642 670 DARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQTDTAFNT 712 (718)
Q Consensus 670 ~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~ 712 (718)
.+..++.+.-|+++.+ .-+....+.++++|.-|.++++-+.+.
T Consensus 219 ~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 219 GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 3445556666777766 334456788889999999988766543
No 166
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0045 Score=70.05 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=90.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
..++|.+..++.|..++..+. -...+.++|..|+||||+|+.+++..-...... .. ...+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcCCC
Confidence 468899999999988887653 235678999999999999999988421111000 00 000111111111111111
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~ 313 (718)
.... ..........+++.+.+... ..+++-++|+|+++.. +.++.|...+..-.....+|++|.+. .+....
T Consensus 90 ~D~~-ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVI-EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEE-EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 0000 00000011122222222111 1245568899999854 46777877777544455555544433 333222
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
......+++..++.++....+.+.+-
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHH
Confidence 22225688888999887777766543
No 167
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0054 Score=68.64 Aligned_cols=170 Identities=12% Similarity=0.152 Sum_probs=92.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+..-....... .......+- +.|...-
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~- 86 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN- 86 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC-
Confidence 468999999999999887653 3567889999999999999999884211111000 000000000 0110000
Q ss_pred CCcccchHHhhhcCHHHHHHHH---HH-HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc-hhhhhhc
Q 047642 241 KPKIEDLELMERMTEEDLELHL---YE-FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN-EPVAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l---~~-~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~-~~v~~~~ 313 (718)
...............+++.... .. -..+++-++|+|++... ..++.|...+..-.....+|.+|.. ..+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 0000000000011122222211 11 12355668999999754 4577787777755556666655543 3333222
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
......+++.+++.++-.+.+...+.
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHH
Confidence 22225688999999988877776653
No 168
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.23 E-value=0.0014 Score=64.88 Aligned_cols=181 Identities=16% Similarity=0.176 Sum_probs=107.1
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEE-EEecCCCCHHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAW-VCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~l~~i~~~ 238 (718)
-.+++|-+..++-+.+.+... ...+...+|++|.|||+-|..+....--.+-|.+++. .++|..-... +.+.-
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K--- 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK--- 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh---
Confidence 346889999999988888773 4678899999999999999988874333456665543 2333322111 00000
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHHh--cCce-EEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEFL--EGRR-YLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~k~-~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
..+...+........ .-++ -.+|||+++.. +.|..+...+.+....++-|..+..- .+..-
T Consensus 109 -------------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 109 -------------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred -------------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 001111110000000 1123 47889999864 67999998888766666655444332 22222
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~ 367 (718)
....-.-|..++|..++...-+...+-..+.+ .+ .+..+.|++.+++
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-----~d---~~al~~I~~~S~G 222 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD-----ID---DDALKLIAKISDG 222 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC-----CC---HHHHHHHHHHcCC
Confidence 21122458889999999888888777554432 22 2355667777754
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0061 Score=61.85 Aligned_cols=155 Identities=14% Similarity=0.178 Sum_probs=92.9
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.++=|.++.+++|.+...-+ =..++=|.++|++|.|||-||++|+|+ ....| +.|..+
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH---
Confidence 345678999999998877432 124678899999999999999999994 44443 333221
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcC-ceEEEEEecCCCh-------------h---hhhHHHhhC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEG-RRYLVVVDDIWHK-------------S---AWESLRRAF 291 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-k~~LlVLDdv~~~-------------~---~~~~l~~~l 291 (718)
++++..-+. -..+.+.+.+.-+. .+..|.+|.++.. + ..-+|...+
T Consensus 220 -----ElVqKYiGE------------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 220 -----ELVQKYIGE------------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred -----HHHHHHhcc------------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 222222111 12334444444444 5788999998743 1 122344444
Q ss_pred CCCC--CCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhCCC
Q 047642 292 PDNG--NGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAFPD 341 (718)
Q Consensus 292 ~~~~--~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af~~ 341 (718)
..+. ..-|||..|...++..-. +-....++++.-+.+.-.++|.-|+-.-
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc
Confidence 4332 356899988877664321 1123567777555555667787776543
No 170
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.20 E-value=0.0018 Score=76.43 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=38.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997764 224569999999999999999884
No 171
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0042 Score=66.69 Aligned_cols=118 Identities=24% Similarity=0.258 Sum_probs=77.3
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF 265 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 265 (718)
++.|.|+-++||||+++.+... .... .+++...+......-+.+ ....+...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------------~~~~~~~~ 90 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------------LLRAYIEL 90 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------------HHHHHHHh
Confidence 9999999999999999777663 2222 445443222111110111 11111111
Q ss_pred hcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhh-----hhcCCCCceeeccCCCHHhHHH
Q 047642 266 LEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVA-----MITDEKNFVYKLRFLNQEESWK 332 (718)
Q Consensus 266 L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~-----~~~~~~~~~~~l~~L~~~es~~ 332 (718)
-..++..|+||.|.....|+.....+.+.++. +|++|+-+..+. ....+....+++-||+-.|-..
T Consensus 91 ~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 91 KEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred hccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 11277899999999999999998888877766 899888877553 3333344678999999999865
No 172
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.20 E-value=0.0015 Score=77.37 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=37.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++||+.++++++..|..... .-+.++|.+|+|||++|..+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--NNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--CceEEEcCCCCCHHHHHHHHHHH
Confidence 3589999999999999977542 34458999999999999998884
No 173
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.18 E-value=0.0026 Score=61.93 Aligned_cols=121 Identities=18% Similarity=0.305 Sum_probs=71.8
Q ss_pred CCCCceeeccccHHHHHHHH---hcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQL---LKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 234 (718)
..-..++|.+..++.|++-. ..+. ...-+.++|..|+|||++++++.+...-++ .--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~--------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE--------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------
Confidence 44567999999999887543 2332 345677899999999999999998422111 111222211
Q ss_pred HHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCC---ChhhhhHHHhhCCCC----CCCcEEEEEecch
Q 047642 235 TIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIW---HKSAWESLRRAFPDN----GNGSRIVITTRNE 307 (718)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~----~~gsriivTTR~~ 307 (718)
+-.+...+...++. ...||+|.+||+. +......++..+.-+ ...-.|..||..+
T Consensus 90 ----------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 90 ----------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ----------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 11122333333332 3469999999985 234566666666521 2334556676666
Q ss_pred hhh
Q 047642 308 PVA 310 (718)
Q Consensus 308 ~v~ 310 (718)
+..
T Consensus 152 HLv 154 (249)
T PF05673_consen 152 HLV 154 (249)
T ss_pred hcc
Confidence 654
No 174
>PRK06921 hypothetical protein; Provisional
Probab=97.16 E-value=0.00058 Score=68.98 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=28.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCC-CceEEEEEe
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGG-FDCRAWVCV 222 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 222 (718)
..-+.++|..|+|||+||.++++. +..+ ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457899999999999999999994 3332 344567663
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00075 Score=77.76 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=84.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC--C---CceEEEEEecCCCCHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG--G---FDCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~---F~~~~wv~vs~~~~~~~~l~~i 235 (718)
..++||+++++++++.|..... .-+.++|.+|+|||++|+.++... +.. . .++.+|.. +.. .+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~----~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIG----SL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHH----HH
Confidence 3589999999999999987532 234689999999999999998732 111 1 13444421 111 11
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh----------hhhhH-HHhhCCCCCCCcEEEEE
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK----------SAWES-LRRAFPDNGNGSRIVIT 303 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~-l~~~l~~~~~gsriivT 303 (718)
+. +... .. +.+.....+.+.+ +.++.+|++|++... .+... +...+. . ..-++|-+
T Consensus 254 la---G~~~------~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~-g~i~vIgA 321 (758)
T PRK11034 254 LA---GTKY------RG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGS 321 (758)
T ss_pred hc---ccch------hh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-C-CCeEEEec
Confidence 11 1000 00 1112222222223 345679999999732 12222 333332 1 12445555
Q ss_pred ecchhhhhhcC------CCCceeeccCCCHHhHHHHHHhhh
Q 047642 304 TRNEPVAMITD------EKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 304 TR~~~v~~~~~------~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
|...+...... ..-..+.+++.+.++..+++....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 54443221111 112578999999999999988653
No 176
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.0023 Score=66.53 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=64.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-CCce-EEEEEecCCC-CHHHHHHHHHHHhcCCccc
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-GFDC-RAWVCVTQEY-TTRDLLQKTIKSFQKPKIE 245 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~-~~~~~l~~i~~~l~~~~~~ 245 (718)
-..++++.+..-..+ +-+.|+|.+|+|||||++.+.+. +.. +-+. ++|+.+.+.. .+.++++.+...+......
T Consensus 119 ~~~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d 195 (380)
T PRK12608 119 LSMRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD 195 (380)
T ss_pred hhHhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence 334577777653322 35699999999999999999884 322 2244 4677777654 5677777777766543211
Q ss_pred chHHhhhcCHHHHHHHHHHHh--cCceEEEEEecCCC
Q 047642 246 DLELMERMTEEDLELHLYEFL--EGRRYLVVVDDIWH 280 (718)
Q Consensus 246 ~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVLDdv~~ 280 (718)
..+ ............+-+++ .+++++||+|++..
T Consensus 196 e~~-~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 196 RPP-DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 001 11111111111222222 58999999999853
No 177
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.13 E-value=0.0019 Score=75.40 Aligned_cols=47 Identities=23% Similarity=0.409 Sum_probs=37.4
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|-++.++.+.+.+... +....++.++|+.|+|||+||+.++..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 45889999999888887642 112457899999999999999999883
No 178
>PRK08181 transposase; Validated
Probab=97.12 E-value=0.001 Score=67.04 Aligned_cols=35 Identities=17% Similarity=0.047 Sum_probs=25.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC 221 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 221 (718)
.-+.++|++|+|||.||..+.+. ...+...+.|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee
Confidence 35899999999999999999884 322333455654
No 179
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=5.4e-05 Score=74.02 Aligned_cols=173 Identities=17% Similarity=0.078 Sum_probs=120.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeecc-CCccccc--cc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKC-NSLVEFP--RS 606 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~-~~l~~lp--~~ 606 (718)
-+.++.|.+++.... ...+...++.+.+|+.|.|+++++.+ . +-..|..-.+|+.|+|+. +.+++.. --
T Consensus 184 rsRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~~LdD--~---I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGLRLDD--P---IVNTIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhhHHhhcchhhee---HHHHHHHHHHHHhhhhccccccccCc--H---HHHHHhccccceeeccccccccchhHHHHH
Confidence 345777777766543 34456778889999999999999985 5 557788889999999985 6676433 23
Q ss_pred ccccCCCcEEEecCcccc-cc-Chhhccc-cccceeeecc---c-----CcccCCCccccccccceecc---ccchHHhc
Q 047642 607 IGNLQCLKTMVASGNSCW-KL-PSQISKL-HQLRHLIARP---L-----GHLQVSTLTNLQTLKYVNFQ---QWDAVDAR 672 (718)
Q Consensus 607 i~~l~~L~~L~l~~~~i~-~l-p~~i~~L-~~L~~L~l~~---~-----~p~~~~~l~~L~~L~~~~~~---~~~~~~l~ 672 (718)
+.+++.|+.|+|+.|.+. +. -..+... ++|..|++++ . +..-...+++|..|+++++. ......|-
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 578899999999999554 11 1112211 3667777621 1 11113467788899998887 34556788
Q ss_pred ccCCCCeEEEeeccccHHHH---hhccCCCCeEEEeeCCCC
Q 047642 673 NLINLQELEIREIPYTNMNF---ILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 673 ~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~ 710 (718)
+++.|+.|.++.|...+|.. +..++.|.+|++.+|--.
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 89999999999995555554 466788999999887543
No 180
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0045 Score=60.02 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++++.+... +..-|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344445443 3567899999999999999999883
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.01 Score=62.65 Aligned_cols=136 Identities=22% Similarity=0.218 Sum_probs=83.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
....+-|+|..|.|||.|++++.| ....+......++++ .+......+..+... -...+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~---------------~~~~F 170 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN---------------EMEKF 170 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh---------------hHHHH
Confidence 466899999999999999999999 455555433333332 333444444443321 11223
Q ss_pred HHHhcCceEEEEEecCCCh---hhhh-HHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCCceeeccCCCHH
Q 047642 263 YEFLEGRRYLVVVDDIWHK---SAWE-SLRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKNFVYKLRFLNQE 328 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~~---~~~~-~l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~~~~~l~~L~~~ 328 (718)
++.. .-=++++||++-. +.|+ .+...+.. ...|-.||+|++... +...+..+ -++++++.+.+
T Consensus 171 k~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd~e 247 (408)
T COG0593 171 KEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPDDE 247 (408)
T ss_pred HHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCCHH
Confidence 4443 3338899999742 2222 33333331 233448999986543 33444444 68999999999
Q ss_pred hHHHHHHhhhCCCC
Q 047642 329 ESWKLFCKKAFPDT 342 (718)
Q Consensus 329 es~~Lf~~~af~~~ 342 (718)
.....+.+++....
T Consensus 248 ~r~aiL~kka~~~~ 261 (408)
T COG0593 248 TRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998775443
No 182
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.06 E-value=0.0059 Score=56.79 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=71.6
Q ss_pred cccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC------------------CCceEEEEEecCCCCH
Q 047642 167 EENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG------------------GFDCRAWVCVTQEYTT 228 (718)
Q Consensus 167 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------~F~~~~wv~vs~~~~~ 228 (718)
++..+.+.+.+..+ .-...+.++|..|+||+|+|..+.+..--.. ......|+.-....
T Consensus 3 ~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-- 79 (162)
T PF13177_consen 3 EEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-- 79 (162)
T ss_dssp HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS--
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc--
Confidence 34445555555444 2355789999999999999988877311111 12223333222110
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEE
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIV 301 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsrii 301 (718)
.....+++. .+.+.+ .++.=++|+||++.. +..+.|+..+..-..++++|
T Consensus 80 ----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 80 ----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 012223332 233322 234568999999864 56778887777667788888
Q ss_pred EEecchh-hhhhcCCCCceeeccCCC
Q 047642 302 ITTRNEP-VAMITDEKNFVYKLRFLN 326 (718)
Q Consensus 302 vTTR~~~-v~~~~~~~~~~~~l~~L~ 326 (718)
++|++.. +..-.......+.+.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888765 333222222556666553
No 183
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00022 Score=69.89 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=100.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcc--cccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLV--EFPRSI 607 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~--~lp~~i 607 (718)
++.++.+.+.+|..+. |+.+..++.+|+.|++|+|+.|.+.. .+..+| -.+++|+.|-|.++.+. ..-.++
T Consensus 70 ~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s--~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSS--DIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCC--ccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 6778888888887754 77777888899999999999998763 221233 35678888888877764 444455
Q ss_pred cccCCCcEEEecCccccc----------cChhhcccccc--------------------ceeeeccc------CcccCCC
Q 047642 608 GNLQCLKTMVASGNSCWK----------LPSQISKLHQL--------------------RHLIARPL------GHLQVST 651 (718)
Q Consensus 608 ~~l~~L~~L~l~~~~i~~----------lp~~i~~L~~L--------------------~~L~l~~~------~p~~~~~ 651 (718)
..++.++.|.+|.|++.. ....+..+..+ ..+.++.. .-.+...
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCC
Confidence 666666666666653321 11111111111 11111000 1112333
Q ss_pred ccccccccceecc---ccchHHhcccCCCCeEEEeec--c------ccHHHHhhccCCCCeEEEe
Q 047642 652 LTNLQTLKYVNFQ---QWDAVDARNLINLQELEIREI--P------YTNMNFILQVNSLRSLTLQ 705 (718)
Q Consensus 652 l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~--~------~~~~~~l~~l~~L~~L~l~ 705 (718)
++.+..|.+..++ -.....+..+++|+.|.++++ . ....--++.|++++.|+=+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 4445555555554 235667889999999999988 1 1112236778888887644
No 184
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.01 Score=66.66 Aligned_cols=170 Identities=13% Similarity=0.165 Sum_probs=90.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.+++|.+...+.+..++..+. -.+.+.++|+.|+||||+|+.+.+..-....-+ ...++.-..-+.|....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 3568999999999999887653 356778999999999999998876311111000 00000001111111100
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHH-----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEE-Eecchhhhh
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEF-----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVI-TTRNEPVAM 311 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriiv-TTR~~~v~~ 311 (718)
. ..............+++. .+... ..+++-++|+|+++.. ..++.|...+..-.....+|+ ||....+..
T Consensus 87 ~-~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 87 L-MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred C-CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 0 000000000001122211 12221 1345668899999854 567777777765444455554 444333332
Q ss_pred hcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 312 ITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 312 ~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
........+++.+++.++..+.+...+-
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHH
Confidence 2222225688889999888877776553
No 185
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0009 Score=67.01 Aligned_cols=23 Identities=39% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999874
No 186
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0025 Score=63.43 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=51.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccc--cCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDV--KGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
-++|.++|++|.|||+|.++++....+ .+.|....-+.++.. .++......-+ .-...+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsESg------------KlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSESG------------KLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhhh------------hHHHHHHHH
Confidence 479999999999999999999997544 455555555544332 33333333222 123455566
Q ss_pred HHHHhcCce--EEEEEecCCCh
Q 047642 262 LYEFLEGRR--YLVVVDDIWHK 281 (718)
Q Consensus 262 l~~~L~~k~--~LlVLDdv~~~ 281 (718)
+++.+..+. +++.+|.|.+.
T Consensus 241 I~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHH
Confidence 677776554 45566888653
No 187
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.00049 Score=63.91 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=59.5
Q ss_pred eEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc-cCCCcEEEecCccccccChhhccccccce
Q 047642 560 FLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN-LQCLKTMVASGNSCWKLPSQISKLHQLRH 638 (718)
Q Consensus 560 ~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 638 (718)
+...+||++|.+. . + ..+..++.|..|.|.+|+|+.+-+.+.. +++|.+|.|.+|+|.++-+ +
T Consensus 43 ~~d~iDLtdNdl~---~---l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d----l----- 106 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR---K---L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD----L----- 106 (233)
T ss_pred ccceecccccchh---h---c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh----c-----
Confidence 4556666666655 3 2 2344566666666666666666555543 3456666666665554321 0
Q ss_pred eeecccCcccCCCccccccccceecc-----ccchHHhcccCCCCeEEEeec
Q 047642 639 LIARPLGHLQVSTLTNLQTLKYVNFQ-----QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 639 L~l~~~~p~~~~~l~~L~~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~ 685 (718)
..+..++.|++|.+..+. ..-.-.+..+++|+.|+..+.
T Consensus 107 --------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 107 --------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred --------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 113344555666666554 223335778899999998877
No 188
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0094 Score=62.49 Aligned_cols=165 Identities=16% Similarity=0.146 Sum_probs=85.2
Q ss_pred eee-ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 163 VVG-FEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 163 ~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+..--........ +..-..-+.+... ..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-------cg~C~~c~~~~~~-~h 77 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-------CGTCTNCKRIDSG-NH 77 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-------CCcCHHHHHHhcC-CC
Confidence 456 444556666666543 3456789999999999999998876311111000000 0000000000000 00
Q ss_pred Cccc-chHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhc
Q 047642 242 PKIE-DLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMIT 313 (718)
Q Consensus 242 ~~~~-~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~ 313 (718)
++.. ..++......+++...+... ..+.+-++|+|+++.. +..+.|...+..-..++.+|++|.+.. +....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0000 00000111223332222111 2345557899998754 456677777776566777777776543 33323
Q ss_pred CCCCceeeccCCCHHhHHHHHHh
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
......+++.+++.++..+.+..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHH
Confidence 33336899999999998877764
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.003 Score=62.63 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=54.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...+.++|.+|+|||+||.++++. ....-..+++++ ..+++..+-...... ..+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~---------~~~~~~----~l 157 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNS---------ETSEEQ----LL 157 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhc---------cccHHH----HH
Confidence 457899999999999999999995 333333455554 334444433332110 011112 23
Q ss_pred HHhcCceEEEEEecCCCh--hhhhH--HHhhCCC-CCCCcEEEEEecc
Q 047642 264 EFLEGRRYLVVVDDIWHK--SAWES--LRRAFPD-NGNGSRIVITTRN 306 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~--~~~~~--l~~~l~~-~~~gsriivTTR~ 306 (718)
+.+. +.=+|||||+... ..|+. +...+.. -...-.+||||..
T Consensus 158 ~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 158 NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3344 3448889999643 34542 2222221 1123447777763
No 190
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0012 Score=68.67 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
.-+.++|..|+|||.||.++++. +...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 56999999999999999999995 3222234666654
No 191
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.98 E-value=0.0015 Score=68.76 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=54.4
Q ss_pred eeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCC-cccccccccccchhhhhccc
Q 047642 511 TRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDT-RIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 511 ~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~l~~~p~~i~~l~~ 589 (718)
..+|.++.+.+..++ .+.++|++|.+.++.. +..+|..+ ..+|+.|++++| .+. . +|++
T Consensus 54 l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~n----LtsLP~~L--P~nLe~L~Ls~Cs~L~---s---LP~s------ 113 (426)
T PRK15386 54 SGRLYIKDCDIESLP--VLPNELTEITIENCNN----LTTLPGSI--PEGLEKLTVCHCPEIS---G---LPES------ 113 (426)
T ss_pred CCEEEeCCCCCcccC--CCCCCCcEEEccCCCC----cccCCchh--hhhhhheEccCccccc---c---cccc------
Confidence 345556644444422 3345677777665432 22233322 245667777766 343 3 5543
Q ss_pred ccEEeeccCC---ccccccccccc------------------CCCcEEEecCccccccChhhccccccceeee
Q 047642 590 LRYFGFKCNS---LVEFPRSIGNL------------------QCLKTMVASGNSCWKLPSQISKLHQLRHLIA 641 (718)
Q Consensus 590 L~~L~l~~~~---l~~lp~~i~~l------------------~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 641 (718)
|+.|+++++. +..+|+++..| .+|++|++++|....+|..+- .+|++|.+
T Consensus 114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 4444454433 44566554433 256677777665555454332 35555554
No 192
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.013 Score=61.03 Aligned_cols=69 Identities=10% Similarity=0.139 Sum_probs=45.9
Q ss_pred ceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 269 RRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 269 k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
++-++|+|+++.. +..+.+...+..-..++.+|+||.+.. +..........+.+.+++.++..+.+...
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 3445567999854 456777777765445677777777653 33222222367899999999998888754
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.024 Score=62.23 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=95.0
Q ss_pred CCCCCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 156 SNAGNEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 156 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
+...-.++=|.++-+.+|.+...-+ -..++-|..+|+||+|||++|+++.| +.+-.| +.+..
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccC
Confidence 3344455666777777776555322 13567899999999999999999999 344444 22221
Q ss_pred CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhC
Q 047642 225 EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAF 291 (718)
Q Consensus 225 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l 291 (718)
. +++.... ..++..+.+..++.=+--..+|.||.++.. ..+.+|..-+
T Consensus 502 p--------EL~sk~v-----------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm 562 (693)
T KOG0730|consen 502 P--------ELFSKYV-----------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM 562 (693)
T ss_pred H--------HHHHHhc-----------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc
Confidence 1 0111111 111122222222222334578888887643 1244454444
Q ss_pred CCCCCCcEEEE---Eecchhhhhhc-C--CCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHH-------
Q 047642 292 PDNGNGSRIVI---TTRNEPVAMIT-D--EKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLG------- 358 (718)
Q Consensus 292 ~~~~~gsriiv---TTR~~~v~~~~-~--~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~------- 358 (718)
........|+| |.|...+-..+ . -....+.++.-+.+-..++|+.++-+-.-. ..-++++++
T Consensus 563 DG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-----~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 563 DGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-----EDVDLEELAQATEGYS 637 (693)
T ss_pred ccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-----ccccHHHHHHHhccCC
Confidence 43333334433 33433332221 1 123567777777777789999887543321 123455554
Q ss_pred -HHHHHHhc
Q 047642 359 -REMVEKCR 366 (718)
Q Consensus 359 -~~I~~~c~ 366 (718)
.+|+.-|.
T Consensus 638 GAel~~lCq 646 (693)
T KOG0730|consen 638 GAEIVAVCQ 646 (693)
T ss_pred hHHHHHHHH
Confidence 35666664
No 194
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0096 Score=62.58 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-------------------CCceEEEEEe
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-------------------GFDCRAWVCV 222 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v 222 (718)
.++|-+....++..+..........+.++|++|+||||+|..+.+..--.. ..+....++-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357777888888888876544455699999999999999999988421111 1122333333
Q ss_pred cCCCC---HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCC
Q 047642 223 TQEYT---TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNG 297 (718)
Q Consensus 223 s~~~~---~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 297 (718)
+.... ..+..+++.+...... ..++.-++|+|+++.. +.-..+...+..-...
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~----------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP----------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC----------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 33222 1222222222221110 0256678999999864 3455666666656667
Q ss_pred cEEEEEecch-hhhhhcCCCCceeeccCC
Q 047642 298 SRIVITTRNE-PVAMITDEKNFVYKLRFL 325 (718)
Q Consensus 298 sriivTTR~~-~v~~~~~~~~~~~~l~~L 325 (718)
+++|++|.+. .+..-.......+++.+.
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCCc
Confidence 7888877733 333322233345666653
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.014 Score=62.02 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=85.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHH----H
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEE----D 257 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~----~ 257 (718)
....-+.+.|++|+|||+||..+.. ...|+.+=-++ +++ .-..++. .
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS------pe~-------------------miG~sEsaKc~~ 586 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS------PED-------------------MIGLSESAKCAH 586 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC------hHH-------------------ccCccHHHHHHH
Confidence 3567888999999999999999987 35676432221 111 1112222 2
Q ss_pred HHHHHHHHhcCceEEEEEecCCChhhh------------hHHHhhCCCC-CCCcEE--EEEecchhhhhhcC---CCCce
Q 047642 258 LELHLYEFLEGRRYLVVVDDIWHKSAW------------ESLRRAFPDN-GNGSRI--VITTRNEPVAMITD---EKNFV 319 (718)
Q Consensus 258 l~~~l~~~L~~k~~LlVLDdv~~~~~~------------~~l~~~l~~~-~~gsri--ivTTR~~~v~~~~~---~~~~~ 319 (718)
+.......-+..--.||+||+...-+| +.|.-.+... .+|-|. +-||-...+...|+ .....
T Consensus 587 i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~ 666 (744)
T KOG0741|consen 587 IKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSST 666 (744)
T ss_pred HHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhe
Confidence 333344444566679999999765443 3344334322 245554 44666667776664 23367
Q ss_pred eeccCCCH-HhHHHHHHhhh-CCCCCCCCcCCCCchHHHHHHHHHHHh
Q 047642 320 YKLRFLNQ-EESWKLFCKKA-FPDTADGQATVCSPGLEKLGREMVEKC 365 (718)
Q Consensus 320 ~~l~~L~~-~es~~Lf~~~a-f~~~~~~~~~~~~~~l~~~~~~I~~~c 365 (718)
|+++-++. ++..+.++..- | .+.+...++.+...+|
T Consensus 667 i~Vpnl~~~~~~~~vl~~~n~f----------sd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 667 IHVPNLTTGEQLLEVLEELNIF----------SDDEVRAIAEQLLSKK 704 (744)
T ss_pred eecCccCchHHHHHHHHHccCC----------CcchhHHHHHHHhccc
Confidence 88988877 67777776543 3 2334455555555544
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.94 E-value=0.034 Score=56.30 Aligned_cols=54 Identities=26% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHH
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 233 (718)
+++..++..+ .-|.+.|.+|+|||+||+.+.+ ..... ...++.....+..+++.
T Consensus 12 ~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHhh
Confidence 4444444433 2566899999999999999987 23222 34555555555555443
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=96.94 E-value=0.002 Score=64.86 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 36779999999999999999874
No 198
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.92 E-value=0.0028 Score=63.43 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=52.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCH-HHHHHHHHHHhcCCc------ccchHHhhhcCHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTT-RDLLQKTIKSFQKPK------IEDLELMERMTEE 256 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~l~~i~~~l~~~~------~~~~~~~~~~~~~ 256 (718)
+-++|+|.+|+||||||+.+++. ++.+|+ .++++-+.+.... .++..++...-.... ..+.+........
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 47899999999999999999994 554554 4556667666543 344444433210000 0000001111111
Q ss_pred HHHHHHHHHh---cCceEEEEEecCCC
Q 047642 257 DLELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 257 ~l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
...-.+-+++ +++.+|+|+||+-.
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1222233444 38999999999854
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.91 E-value=0.0007 Score=63.95 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=25.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC 221 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 221 (718)
..-+.|+|.+|+|||.||.++.+.. +... ..+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEee
Confidence 3569999999999999999999852 2222 3356665
No 200
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.01 Score=61.47 Aligned_cols=172 Identities=16% Similarity=0.206 Sum_probs=94.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-------------cCCCceEEEEEecCCCC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDV-------------KGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~vs~~~~ 227 (718)
.+++|-+..++.+...+..+. -.....++|+.|+||+++|..+.+..-- ...++-..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 357899999999998887653 3478999999999999999877663111 11222234442100000
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEE
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRI 300 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsri 300 (718)
-..+-..-+...+..... ......++. +.+.+.+ .+++-++|+|+++.. ...+.|...+..-.+..-|
T Consensus 83 g~~~~~~~~~~~~~~~~~----~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 83 GKLITASEAEEAGLKRKA----PPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccchhhhhhccccccc----cccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 000000001111100000 011122222 2333333 345678999999754 4566676666543333334
Q ss_pred EEEecchhhhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 301 VITTRNEPVAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 301 ivTTR~~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
++|+....+..........+++.+++.++..+.+....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 44544444444333334789999999999999888764
No 201
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.88 E-value=0.014 Score=68.33 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=85.9
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
.++.|.+..+++|.+.+.-. -...+-|.++|++|+|||+||+++.+. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 45778888888777765421 123456889999999999999999994 33333 222211
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--------------hhhhHHHhhCCC--
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--------------SAWESLRRAFPD-- 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~-- 293 (718)
+++....+ .+...+...+...-...+.+|++|+++.. ....++...+..
T Consensus 522 ----~l~~~~vG-----------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 522 ----EILSKWVG-----------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred ----HHhhcccC-----------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 11111111 01112222223333456789999998632 112334444442
Q ss_pred CCCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 NGNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 ~~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+--||.||...+..... +-....+.++..+.++-.++|..+.-
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 12344566677665533211 11236788888899998999876553
No 202
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.87 E-value=0.00061 Score=61.76 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=30.6
Q ss_pred EEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHH
Q 047642 187 ISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 234 (718)
|.++|.+|+|||+||+.++.- ... ...-+.++...+..+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceee
Confidence 679999999999999999983 211 2334567777777766543
No 203
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.87 E-value=0.00075 Score=59.45 Aligned_cols=22 Identities=50% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 204
>PRK07261 topology modulation protein; Provisional
Probab=96.86 E-value=0.0019 Score=60.73 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=40.8
Q ss_pred EEEEEecCCchHHHHHHHHhcCcccc-CCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVK-GGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------------~~~~~~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------------QERDDDDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------------ccCCHHHHHHHHHH
Confidence 48999999999999999998742221 233444442110 11223455556666
Q ss_pred HhcCceEEEEEecCCC
Q 047642 265 FLEGRRYLVVVDDIWH 280 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~ 280 (718)
.+.+.+ .|+|+...
T Consensus 55 ~~~~~~--wIidg~~~ 68 (171)
T PRK07261 55 FLLKHD--WIIDGNYS 68 (171)
T ss_pred HHhCCC--EEEcCcch
Confidence 676666 67788754
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.00082 Score=69.55 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=40.7
Q ss_pred ceeeccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCc
Q 047642 162 QVVGFEENTKMLIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVNST 208 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 208 (718)
+++|.++.++++++++... +...++++++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999653 2346899999999999999999999853
No 206
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.01 Score=69.53 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=82.6
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.++.|.++.+++|.+++... -...+-|.++|++|+||||||+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH---
Confidence 345889999999988776421 022457889999999999999999983 33222 222211
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCCCC-
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPDN- 294 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~- 294 (718)
.+ .....+ .....+...+.......+.+|+|||++.. .....+...+...
T Consensus 247 -~i----~~~~~g-----------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~ 310 (733)
T TIGR01243 247 -EI----MSKYYG-----------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK 310 (733)
T ss_pred -HH----hccccc-----------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc
Confidence 11 111000 01122233333334456789999998642 1123344433322
Q ss_pred CCCcEEEE-Eecchh-hhhhc---CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 295 GNGSRIVI-TTRNEP-VAMIT---DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 295 ~~gsriiv-TTR~~~-v~~~~---~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..+..++| ||.... +-... +-....+.+...+.++-.+++..+.
T Consensus 311 ~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 311 GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 23334444 444332 11111 1112457778888888888887543
No 207
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.84 E-value=0.0016 Score=59.32 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 208
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0064 Score=64.54 Aligned_cols=48 Identities=27% Similarity=0.356 Sum_probs=36.8
Q ss_pred CCceeeccc---cHHHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEE---NTKMLIKQLLKDE-------QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.++-|.|+ ++++|+++|.++. .=++-|.++|++|.|||-||++|+-.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 345678776 5566778887652 22567899999999999999999984
No 209
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.83 E-value=0.0053 Score=69.13 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=40.2
Q ss_pred CCCceeeccccHHHHHHHHhcCC---CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 159 GNEQVVGFEENTKMLIKQLLKDE---QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.-.+++|-++.++++..++.... ...+++.|+|++|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34569999999999999987542 23468999999999999999999984
No 210
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.83 E-value=0.0069 Score=57.58 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=65.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE---ecCCCCHHHHHH------HHHHHhcCCcccchHHhhhcCH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC---VTQEYTTRDLLQ------KTIKSFQKPKIEDLELMERMTE 255 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~l~------~i~~~l~~~~~~~~~~~~~~~~ 255 (718)
.+++|+|..|.|||||++.++.- .....+.+++. +. ..+...... ++++.++...... ......+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~---~~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~-~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGL---LKPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLAD-RPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhc-CCcccCCH
Confidence 48999999999999999999983 23344555442 21 122222111 1333333211100 00122222
Q ss_pred HHH-HHHHHHHhcCceEEEEEecCCC---hhhhhHHHhhCCCC-CC-CcEEEEEecchhhhhh
Q 047642 256 EDL-ELHLYEFLEGRRYLVVVDDIWH---KSAWESLRRAFPDN-GN-GSRIVITTRNEPVAMI 312 (718)
Q Consensus 256 ~~l-~~~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~-~~-gsriivTTR~~~v~~~ 312 (718)
.+. .-.+-..+...+-++++|+-.. ....+.+...+... .. |..||++|.+......
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 222 2335556677888999998753 23333443333321 22 6788889888776533
No 211
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0029 Score=63.46 Aligned_cols=50 Identities=32% Similarity=0.391 Sum_probs=33.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
+..=+.++|.+|+|||.||.++.+..- +.. -.+.+++ ..+++.++.....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g-~sv~f~~------~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG-ISVLFIT------APDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC-CeEEEEE------HHHHHHHHHHHHh
Confidence 345689999999999999999999633 322 3355554 3445555554443
No 212
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.016 Score=64.13 Aligned_cols=162 Identities=13% Similarity=0.193 Sum_probs=87.2
Q ss_pred CCceeeccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 235 (718)
+.+-+|.++-+++|+++|.-. .-.-.++++||++|+|||.|++.++. .....|-. ++++.--|..+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAE----- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAE----- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHH-----
Confidence 345679999999999998532 22346999999999999999999998 45555522 22222222211
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------hhhhHHHhhCCC-C-----------C-C
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------SAWESLRRAFPD-N-----------G-N 296 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~l~~-~-----------~-~ 296 (718)
+.+...+ -+..+. ..+...+. ..+.++-+++||.++.. +--..+...|.. . . -
T Consensus 392 ---IRGHRRT---YIGamP-GrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 392 ---IRGHRRT---YIGAMP-GKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred ---hcccccc---ccccCC-hHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccc
Confidence 1111000 011111 11111222 22457889999999743 111222222221 0 0 0
Q ss_pred CcEE-EEEecch-h-hhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 297 GSRI-VITTRNE-P-VAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 297 gsri-ivTTR~~-~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
=|.| .|||-+. + +..-.-..-.++++.+-+++|-.+.-+++..
T Consensus 464 LS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 1455 3444322 2 2111111116789999999998887776654
No 213
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.79 E-value=0.0083 Score=65.76 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=81.5
Q ss_pred CceeeccccHHHHHHHH---hc-----CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHH
Q 047642 161 EQVVGFEENTKMLIKQL---LK-----DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLL 232 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L---~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 232 (718)
.++.|.+.-++.+.+.. .. +-..++-|.++|++|+|||.+|+.+.+. ..-.| +.++. ..
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~-----~~l~~----~~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL-----LRLDV----GK-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE-----EEEEh----HH--
Confidence 35678776665554422 11 1123567899999999999999999984 22222 11111 01
Q ss_pred HHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh----h----------hhhHHHhhCCCCCCCc
Q 047642 233 QKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK----S----------AWESLRRAFPDNGNGS 298 (718)
Q Consensus 233 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~----~----------~~~~l~~~l~~~~~gs 298 (718)
+.....+ .+...+...+...-...+++|++|+++.. . ....+...+.....+-
T Consensus 295 --l~~~~vG-----------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V 361 (489)
T CHL00195 295 --LFGGIVG-----------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPV 361 (489)
T ss_pred --hcccccC-----------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCce
Confidence 1111000 01112222222222357899999999732 0 1122222232223344
Q ss_pred EEEEEecchhhhh----hcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 299 RIVITTRNEPVAM----ITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 299 riivTTR~~~v~~----~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
-||.||.+..... ..+-....+.++.-+.++-.++|..+.-+
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 4566776554211 11122357888888999999999877654
No 214
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.79 E-value=0.0034 Score=64.71 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=64.8
Q ss_pred eccccHHHHHHHHhcCC--CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 047642 165 GFEENTKMLIKQLLKDE--QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKP 242 (718)
Q Consensus 165 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~ 242 (718)
++........+++..-. ...+-+.|+|..|+|||.||.++++... +.. ..+.+++++ .++..+.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH------HHHHHHHHHHhcC
Confidence 34444444555554321 1345789999999999999999999532 223 335566543 4444544433211
Q ss_pred cccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCC--hhhhhH--HHhhC-CCC-CCCcEEEEEec
Q 047642 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWH--KSAWES--LRRAF-PDN-GNGSRIVITTR 305 (718)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~--~~~~~~--l~~~l-~~~-~~gsriivTTR 305 (718)
+..+ .+. .+ .+-=||||||+.. ...|.. +...+ ... ..+-.+|+||.
T Consensus 207 -----------~~~~---~l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 -----------SVKE---KID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -----------cHHH---HHH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1111 122 22 2455899999963 345643 44333 211 23556888886
No 215
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.77 E-value=0.0052 Score=57.09 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=29.7
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
++.|+|.+|+||||++..+... ...+-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999884 232335577877665543
No 216
>PF14516 AAA_35: AAA-like domain
Probab=96.77 E-value=0.038 Score=57.98 Aligned_cols=176 Identities=13% Similarity=0.066 Sum_probs=98.1
Q ss_pred CCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC-----CCHHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE-----YTTRDLL 232 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~l 232 (718)
.+.+..|+|....+++.+.+.+++ ..+.|.|+-.+|||+|...+.+. .+..=..++++++..- .+....+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 344557889877788888887642 38999999999999999999885 3322234567766542 2455666
Q ss_pred HHHHHHhcCCccc--chHH-h--hhcCHHHHHHHHHHHh---cCceEEEEEecCCChh--------hhhHHHhhCCCCC-
Q 047642 233 QKTIKSFQKPKIE--DLEL-M--ERMTEEDLELHLYEFL---EGRRYLVVVDDIWHKS--------AWESLRRAFPDNG- 295 (718)
Q Consensus 233 ~~i~~~l~~~~~~--~~~~-~--~~~~~~~l~~~l~~~L---~~k~~LlVLDdv~~~~--------~~~~l~~~l~~~~- 295 (718)
+.++..+...-.. ..+. . ...........+.+++ ..++.+|+||+|+..- -+..|+.......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 6666655442211 1111 1 1112233444555543 2589999999998531 1222222111111
Q ss_pred ---CCcEEEEEecchhh--hhhcCCC----CceeeccCCCHHhHHHHHHhhh
Q 047642 296 ---NGSRIVITTRNEPV--AMITDEK----NFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 296 ---~gsriivTTR~~~v--~~~~~~~----~~~~~l~~L~~~es~~Lf~~~a 338 (718)
-.+-.+|...+... ....... ...+++++++.+|..+|...+-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 11112222222211 1111110 1468899999999999988764
No 217
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.72 E-value=0.0053 Score=61.19 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCC----CceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGG----FDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.-.++.|+|.+|+|||+||.+++-....... ...++|++....++..++ .++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 4579999999999999999999753222221 357889998887776544 3344443
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0032 Score=59.61 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=28.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEE
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV 220 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 220 (718)
...+|.++|+.|+||||+|+.+++ +...++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 455555555555
No 219
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.68 E-value=0.0058 Score=60.45 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=34.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDL 231 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 231 (718)
.-.++.|+|.+|+|||++|.+++.. .......++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 4579999999999999999999874 32334568899877 5655443
No 220
>PRK04296 thymidine kinase; Provisional
Probab=96.68 E-value=0.0031 Score=60.41 Aligned_cols=113 Identities=12% Similarity=-0.021 Sum_probs=62.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
.++.|+|..|.||||+|..+... ...+...++.+. ..++.+.....++..++.... .......+++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~----~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE----AIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCccc----ceEeCChHHHHHHHHh
Confidence 47889999999999999988884 333333333331 222222223344455442111 0111233445555554
Q ss_pred HhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh
Q 047642 265 FLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP 308 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~ 308 (718)
..++.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 3334458999999643 3233343332 245788999988744
No 221
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.68 E-value=0.015 Score=58.49 Aligned_cols=175 Identities=16% Similarity=0.109 Sum_probs=99.9
Q ss_pred CceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i~~ 237 (718)
..++|-.++.+++-.++... .++..-|.|+|+.|.|||+|...+..+ .+..-+...-|.+...... +-.++.|..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 35889999999998888653 122446789999999999999888886 2222234455556555443 334566666
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcC------ceEEEEEecCCChh------hhhHHHhhC-CCCCCCcEEEEEe
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEG------RRYLVVVDDIWHKS------AWESLRRAF-PDNGNGSRIVITT 304 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~------k~~LlVLDdv~~~~------~~~~l~~~l-~~~~~gsriivTT 304 (718)
++....... .....+..+....+...|+. -+++.|+|..+--. .+-.+...- ....+-+-|-+||
T Consensus 102 ql~~e~~~~--~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 102 QLALELNRI--VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHhhh--heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 654311100 01111223333444444432 36888888876321 111121111 1244667778899
Q ss_pred cchhhh---hhcCC---CCceeeccCCCHHhHHHHHHhhhC
Q 047642 305 RNEPVA---MITDE---KNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 305 R~~~v~---~~~~~---~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
|-.-.. +.... ...++-++.++-++..+++++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 865332 11111 113666778888888888887653
No 222
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.029 Score=60.79 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=63.1
Q ss_pred CCceeeccccHHHHHHHHhcC---C-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD---E-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.++=|.+..+.++.+++..- + ..++-|.+||++|+|||.||+++.++ ..-.| +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch----
Confidence 346778999998888877531 1 23567889999999999999999994 44333 333322
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
+|+..+.+ .+++.+.+.+.+.-..-++++++|+++-
T Consensus 258 ----eivSGvSG-----------ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ----EIVSGVSG-----------ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ----hhhcccCc-----------ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 33333332 2334444445555567899999999974
No 223
>PRK06696 uridine kinase; Validated
Probab=96.67 E-value=0.0018 Score=63.89 Aligned_cols=42 Identities=26% Similarity=0.364 Sum_probs=34.4
Q ss_pred ccccHHHHHHHHhc-CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 166 FEENTKMLIKQLLK-DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 166 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
|.+-+++|.+.+.. ....+.+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55667778877765 3456889999999999999999999983
No 224
>PRK07667 uridine kinase; Provisional
Probab=96.65 E-value=0.0025 Score=61.32 Aligned_cols=39 Identities=33% Similarity=0.538 Sum_probs=32.9
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+.|.+.+....+...+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356777777776667789999999999999999999883
No 225
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.64 E-value=0.0098 Score=70.31 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=37.3
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..++|.+..++.+...+... +....++.++|+.|+|||+||+.+.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999988887632 11235789999999999999999997
No 226
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.62 E-value=0.0052 Score=72.65 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=36.6
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..++|-+..++.+.+.+... +.....+.++|+.|+|||+||+.+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46889999999998887532 12235678999999999999999987
No 227
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.62 E-value=0.0047 Score=72.72 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=38.0
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|-+..++.+.+.+... +....++.++|+.|+|||.||+.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~ 619 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL 619 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888531 223458899999999999999988773
No 228
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0094 Score=58.74 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=74.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-----CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-----EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDL 258 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l 258 (718)
-.+++|||..|+||||+++.+.. ....-.+.+++.-.+ .....+-..++++.++.....-.......+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 34899999999999999999997 444334455543221 1123344556666665432110000112222333
Q ss_pred HH-HHHHHhcCceEEEEEecCCChhh---hhHHHhhCCC--CCCCcEEEEEecchhhhhhcCCC
Q 047642 259 EL-HLYEFLEGRRYLVVVDDIWHKSA---WESLRRAFPD--NGNGSRIVITTRNEPVAMITDEK 316 (718)
Q Consensus 259 ~~-~l~~~L~~k~~LlVLDdv~~~~~---~~~l~~~l~~--~~~gsriivTTR~~~v~~~~~~~ 316 (718)
++ .+.+.|.-++-+||.|..-+.-+ -.++...+.+ ...|-..+..|.+-.++..+...
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 33 35567788899999998654311 1222222221 23466788888888888877553
No 229
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.61 E-value=0.017 Score=53.52 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=37.9
Q ss_pred HHHHHhcCceEEEEEec----CCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCC
Q 047642 261 HLYEFLEGRRYLVVVDD----IWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDE 315 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDd----v~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~ 315 (718)
.+.+.+-+++-+++-|. ++....|+-+.-+-.-+..|..|+++|.+.++...+..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 45556667788888885 44445666544333345679999999999998877643
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.60 E-value=0.0039 Score=59.82 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=37.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-CCCHHHHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~ 241 (718)
++||.+||+.|+||||.+.+++.....+ -..+..++... .....+-++...+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 4799999999999999998888743323 33466666532 23445566666776664
No 231
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.59 E-value=0.015 Score=57.62 Aligned_cols=94 Identities=22% Similarity=0.178 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCC------ceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH---hhhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGF------DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL---MERM 253 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~---~~~~ 253 (718)
.-.++.|+|.+|+|||+||..+.... .... ..++|+.....++...+. .+..........-... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 45699999999999999999987632 2222 457899887777765543 3333322210000000 1112
Q ss_pred CHHHHHHHHHHHhc----CceEEEEEecCC
Q 047642 254 TEEDLELHLYEFLE----GRRYLVVVDDIW 279 (718)
Q Consensus 254 ~~~~l~~~l~~~L~----~k~~LlVLDdv~ 279 (718)
+.+++...+..... .+.-+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 44555555554442 344589999985
No 232
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.58 E-value=0.017 Score=63.65 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=103.4
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCcc------ccCCCceEEEEEecCCCCHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNSTD------VKGGFDCRAWVCVTQEYTTRDL 231 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~~ 231 (718)
..+-+|+.+..+|-.++... ......+-|.|.+|+|||..+..|.+... --..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 34678999999998887542 23345999999999999999999998422 112333 445555555678999
Q ss_pred HHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhc-----CceEEEEEecCCChhh--hhHHHhhCCC-CCCCcEEEEE
Q 047642 232 LQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLE-----GRRYLVVVDDIWHKSA--WESLRRAFPD-NGNGSRIVIT 303 (718)
Q Consensus 232 l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~k~~LlVLDdv~~~~~--~~~l~~~l~~-~~~gsriivT 303 (718)
+..|..++.+... ........|..+.. .+..+|++|+++..-. -+-+-..|.| ..++||++|-
T Consensus 475 Y~~I~~~lsg~~~---------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 475 YEKIWEALSGERV---------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHhcccCcc---------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 9999999987543 23334444555553 4568888898864321 2334445555 4578988775
Q ss_pred ecchh-----------hhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 304 TRNEP-----------VAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 304 TR~~~-----------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
+=... +...++. ..+..++-+.++-.+....+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EecccccCHHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhh
Confidence 42211 1112221 345566666666555554443
No 233
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.57 E-value=0.026 Score=56.99 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=72.1
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE---ecCCCCHHHHHHHHHHHhcC-Ccc
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC---VTQEYTTRDLLQKTIKSFQK-PKI 244 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~l~~i~~~l~~-~~~ 244 (718)
..+.++..|... ....-++|+|..|.|||||.+.+... + ......+++. +...... .++...... +..
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~-~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--L-STGISQLGLRGKKVGIVDER----SEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--c-CCCCceEEECCEEeecchhH----HHHHHHhcccccc
Confidence 445555555543 23578999999999999999999983 2 2333444442 2111111 233222211 110
Q ss_pred cchHHhhhcC-HHHHHHHHHHHh-cCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 245 EDLELMERMT-EEDLELHLYEFL-EGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 245 ~~~~~~~~~~-~~~l~~~l~~~L-~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
.-.....-.+ ... ...+...+ ...+-++|+|.+-..+.+..+...+. .|..||+||.+..+...
T Consensus 169 ~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 169 DVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0000000011 111 11233333 25788999999988777777766653 47789999987766443
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.56 E-value=0.014 Score=69.26 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=38.3
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.+..++.+...+... +....++.++|+.|+|||++|+.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~ 618 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF 618 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999888652 112457889999999999999999983
No 235
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.56 E-value=0.0055 Score=59.19 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=62.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
.+|.|+|+.|+||||++..+... +..+....+++--.. .+.... ...++.+-. . ..+.......++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~---------v-g~~~~~~~~~i~ 68 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIEDPIEFVHES-KRSLINQRE---------V-GLDTLSFENALK 68 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcCCccccccC-ccceeeecc---------c-CCCccCHHHHHH
Confidence 37899999999999999988773 333333444432111 110000 000010000 0 011223445577
Q ss_pred HHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhh
Q 047642 264 EFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAM 311 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~ 311 (718)
..|...+=.|++|++-+.+.+....... ..|-.++.|+....+..
T Consensus 69 ~aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 69 AALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HHhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 7777777899999998776655544332 24556888877665543
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.093 Score=59.89 Aligned_cols=117 Identities=21% Similarity=0.345 Sum_probs=69.3
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTTRDLL 232 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l 232 (718)
..++|-++.++.+.+.+... +....+...+|+.|||||-||+++... -|+ -...+ .+|+.+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~ali----R~DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALI----RIDMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccce----eechHHHH
Confidence 45889999998888887532 334578889999999999999998872 221 01111 12333333
Q ss_pred HH-HHHHhcC-CcccchHHhhhcCHHHHHHHHHHHhcCceE-EEEEecCCC--hhhhhHHHhhCCCC
Q 047642 233 QK-TIKSFQK-PKIEDLELMERMTEEDLELHLYEFLEGRRY-LVVVDDIWH--KSAWESLRRAFPDN 294 (718)
Q Consensus 233 ~~-i~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~-LlVLDdv~~--~~~~~~l~~~l~~~ 294 (718)
.. -+..|-+ +.+- +. .++ -..|.+..+.++| +|.||+|.. ++.++-+...|.++
T Consensus 562 EkHsVSrLIGaPPGY----VG---yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 562 EKHSVSRLIGAPPGY----VG---YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHhCCCCCC----ce---ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 22 2333332 2110 00 011 2235566677877 777899984 45677776666643
No 237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.53 E-value=0.0075 Score=58.88 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=36.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 233 (718)
.-.++.|+|.+|+|||++|.++... .......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999999998874 333446788998875 66655443
No 238
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.001 Score=64.49 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCceEEEEEecCCcccccccccccchhhhhcccccEEeeccC--Ccc-cccccccccCCCcEEEecCccccc
Q 047642 557 SLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCN--SLV-EFPRSIGNLQCLKTMVASGNSCWK 625 (718)
Q Consensus 557 ~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~i~~ 625 (718)
.+..|..|++.+..++ .+ ..+..|++|++|.+++| ++. .++...-++++|++|++++|+|+.
T Consensus 41 ~~~~le~ls~~n~glt---t~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT---TL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccchhhhhhhcccee---ec----ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3444445555555544 21 12335566777777766 333 444444555677777777776554
No 239
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.53 E-value=0.073 Score=55.90 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhcCC-CCcEEEEEEecCCchHHHHHHHHhcCcccc--CCCc---eEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 168 ENTKMLIKQLLKDE-QQRFVISILGMGGLGKTTLARKLVNSTDVK--GGFD---CRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 168 ~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~---~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.-.+.|.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+-. ..+. .-+|-......-...++.++..++.
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 34566777777653 568899999999999999999998853322 1121 1234333323234455555555553
No 240
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.49 E-value=0.037 Score=53.65 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=88.5
Q ss_pred CCCceeeccccHHH---HHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHH
Q 047642 159 GNEQVVGFEENTKM---LIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDL 231 (718)
Q Consensus 159 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 231 (718)
.-.++||-++.+.+ |++.|.++ +-.++-|..+|++|.|||-+|+++.|. .+..| +.+. ..++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vk----at~l 187 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVK----ATEL 187 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEec----hHHH
Confidence 34568998887764 56777665 235789999999999999999999994 44333 1111 1111
Q ss_pred HHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH----hcCceEEEEEecCCCh--------------hhhhHHHhhCCC
Q 047642 232 LQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF----LEGRRYLVVVDDIWHK--------------SAWESLRRAFPD 293 (718)
Q Consensus 232 l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~ 293 (718)
+. +.. .+..+++++. -+.-++.+.+|.++-. +..+.|...+..
T Consensus 188 iG---ehV----------------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg 248 (368)
T COG1223 188 IG---EHV----------------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG 248 (368)
T ss_pred HH---HHh----------------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC
Confidence 11 111 1122222222 2346889999988642 123334433432
Q ss_pred --CCCCcEEEEEecchhhhhhcCC--CCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 --NGNGSRIVITTRNEPVAMITDE--KNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 --~~~gsriivTTR~~~v~~~~~~--~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.+.|-..|-.|.+..+....-- ...-++...-+++|-.+++..++-
T Consensus 249 i~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 249 IKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred cccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 3446556666666655432211 114466677788888999888773
No 241
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.46 E-value=0.016 Score=54.93 Aligned_cols=122 Identities=17% Similarity=0.076 Sum_probs=60.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcC--Cccc--c--h-HH-hhhcCHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK--PKIE--D--L-EL-MERMTEE 256 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~--~~~~--~--~-~~-~~~~~~~ 256 (718)
.+++|+|..|.|||||++.+..-. ..-.+.+++.-. +........-..++- +... . . .. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 489999999999999999998842 222334443211 111111111111110 0000 0 0 00 1112222
Q ss_pred HH-HHHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 257 DL-ELHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 257 ~l-~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
+. .-.+-..+..++-+++||+.... ..-+.+...+.....|..||++|.+......
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 22 22344556677788999997642 2222333333221236788899988876653
No 242
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.46 E-value=0.01 Score=58.42 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=31.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
.-.++.|.|.+|+||||+|.+++.. ...+-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 4579999999999999999998874 222334577887655543
No 243
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.45 E-value=0.014 Score=54.92 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=61.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC---ccccCC---Cc--eEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNS---TDVKGG---FD--CRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEE 256 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~---~~~~~~---F~--~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~ 256 (718)
.+++|+|+.|+|||||.+.+..+ ..+..+ |. ...|+ .+ .+.+..++.............+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 48999999999999999999642 111111 11 12232 22 344555543211000001222222
Q ss_pred HH-HHHHHHHhcCc--eEEEEEecCCC---hhhhhHHHhhCCC-CCCCcEEEEEecchhhhhh
Q 047642 257 DL-ELHLYEFLEGR--RYLVVVDDIWH---KSAWESLRRAFPD-NGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 257 ~l-~~~l~~~L~~k--~~LlVLDdv~~---~~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~ 312 (718)
+. .-.+-..+..+ +-++++|+--. ....+.+...+.. ...|..||++|.+.+....
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~ 154 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 22 22344455556 77888898753 2333333333332 1247779999998877643
No 244
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.45 E-value=0.012 Score=65.93 Aligned_cols=44 Identities=32% Similarity=0.448 Sum_probs=36.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|.+..++.+...+.... ..-|.|+|.+|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999988775543 34568999999999999999986
No 245
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.035 Score=58.19 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|+++|.+|+||||++..++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999873
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.40 E-value=0.018 Score=52.78 Aligned_cols=122 Identities=19% Similarity=0.093 Sum_probs=63.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEE---EecCCCCHHHHHHHHHHHhcC---Ccc-c---chHHhhhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV---CVTQEYTTRDLLQKTIKSFQK---PKI-E---DLELMERMT 254 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~~l~~i~~~l~~---~~~-~---~~~~~~~~~ 254 (718)
..|-|++..|.||||+|....-. .-++-..+.++ .-........+++.+ ..+.. ... . ..+......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~r--a~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALR--ALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46788899999999999877763 32332233343 222223333333332 11100 000 0 000000011
Q ss_pred HHHHHHHHHHHhcCce-EEEEEecCCCh-----hhhhHHHhhCCCCCCCcEEEEEecchhh
Q 047642 255 EEDLELHLYEFLEGRR-YLVVVDDIWHK-----SAWESLRRAFPDNGNGSRIVITTRNEPV 309 (718)
Q Consensus 255 ~~~l~~~l~~~L~~k~-~LlVLDdv~~~-----~~~~~l~~~l~~~~~gsriivTTR~~~v 309 (718)
..+.....++.+.... =|||||++-.. -..+.+...+.....+.-||+|.|+..-
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 1223334445555544 49999998643 2345566666656667789999998753
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0062 Score=70.39 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=37.7
Q ss_pred CceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|-++.++.|.+.+... +.....+.++|++|+|||++|+.+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999998888632 222457899999999999999999884
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00047 Score=66.98 Aligned_cols=99 Identities=19% Similarity=0.362 Sum_probs=76.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccc--cc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPR--SI 607 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~--~i 607 (718)
+.+++.|++.++.... + +++.+|+.|.||.|+-|.|+ . + ..+..+++|+.|+|+.|.|..|.+ .+
T Consensus 18 l~~vkKLNcwg~~L~D-----I-sic~kMp~lEVLsLSvNkIs---s---L-~pl~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----I-SICEKMPLLEVLSLSVNKIS---S---L-APLQRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCCccH-----H-HHHHhcccceeEEeeccccc---c---c-hhHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4567778888877643 2 56788999999999999998 5 3 568899999999999999987764 35
Q ss_pred cccCCCcEEEecCcccc-ccCh-----hhccccccceeee
Q 047642 608 GNLQCLKTMVASGNSCW-KLPS-----QISKLHQLRHLIA 641 (718)
Q Consensus 608 ~~l~~L~~L~l~~~~i~-~lp~-----~i~~L~~L~~L~l 641 (718)
.+|++|++|.|..|... .-+. -+.-|++|+.|+-
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 78999999999888433 3332 2556778888763
No 249
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.37 E-value=0.034 Score=50.56 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=56.6
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHH-HHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEE-DLELHLY 263 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~-~l~~~l~ 263 (718)
.+++|+|..|.|||||++.+..-. ....+.+|+.-.. .+.- ....+.. ...-.+-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~--------~~~lS~G~~~rv~la 82 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGY--------FEQLSGGEKMRLALA 82 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEE--------EccCCHHHHHHHHHH
Confidence 489999999999999999998842 2234444442100 0000 0001111 1122345
Q ss_pred HHhcCceEEEEEecCCC---hhhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 264 EFLEGRRYLVVVDDIWH---KSAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
..+..++-++++|+-.. ......+...+... +..||++|.+.+.+..
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 55666778899998753 33333343333322 2468888887765543
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.36 E-value=0.0029 Score=68.96 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=39.2
Q ss_pred ceeeccccHHHHHHHHhc----CCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 162 QVVGFEENTKMLIKQLLK----DEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+++|.++.+++|++.|.. .+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999933 244567999999999999999999988
No 251
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0018 Score=37.65 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=9.7
Q ss_pred CcEEEecCccccccChhhc
Q 047642 613 LKTMVASGNSCWKLPSQIS 631 (718)
Q Consensus 613 L~~L~l~~~~i~~lp~~i~ 631 (718)
|++||+++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.047 Score=59.29 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=83.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
+.-|.+||++|+|||-||++|+| +.+-+| ++|-.. +++...+ ..++..+...++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkYV---------------GESErAVR~vFq 598 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKYV---------------GESERAVRQVFQ 598 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHHh---------------hhHHHHHHHHHH
Confidence 45788999999999999999999 445554 332221 1111100 011122222222
Q ss_pred HHhcCceEEEEEecCCCh-------------hhhhHHHhhCCC--CCCCcEEEEEecchhhhhhc--CC--CCceeeccC
Q 047642 264 EFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPD--NGNGSRIVITTRNEPVAMIT--DE--KNFVYKLRF 324 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--~~~gsriivTTR~~~v~~~~--~~--~~~~~~l~~ 324 (718)
+.=..-+++|.+|.++.. ...++|..-+.. ...|--||-.|...++..-. .. .....-++.
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 222456899999999743 124455555542 23566677777766654321 11 225677788
Q ss_pred CCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHH
Q 047642 325 LNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGRE 360 (718)
Q Consensus 325 L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~ 360 (718)
-+.+|-.++++..+-....+ ...+-++.++++.
T Consensus 679 Pn~~eR~~ILK~~tkn~k~p---l~~dVdl~eia~~ 711 (802)
T KOG0733|consen 679 PNAEERVAILKTITKNTKPP---LSSDVDLDEIARN 711 (802)
T ss_pred CCHHHHHHHHHHHhccCCCC---CCcccCHHHHhhc
Confidence 88889899988776522211 1133456666653
No 253
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.32 E-value=0.065 Score=52.01 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=34.1
Q ss_pred HHHHHhcCceEEEEEecCC---ChhhhhHHHhhCCC--CCCCcEEEEEecchhhhhhcC
Q 047642 261 HLYEFLEGRRYLVVVDDIW---HKSAWESLRRAFPD--NGNGSRIVITTRNEPVAMITD 314 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~--~~~gsriivTTR~~~v~~~~~ 314 (718)
.+-+.|...+-+|+.|+=- +.+.=+.+...+.. ...|..||+.|.+..+|..+.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 4556677788888989742 11111222222321 234788999999999999764
No 254
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0061 Score=58.35 Aligned_cols=79 Identities=22% Similarity=0.152 Sum_probs=43.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
.+.+|||.|.+|+||||+|+.++.. +..+ ++.+-...+--.-....-........ .......+.+-+...|
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~-----~~~~I~~D~YYk~~~~~~~~~~~~~n--~d~p~A~D~dLl~~~L 77 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVE-----KVVVISLDDYYKDQSHLPFEERNKIN--YDHPEAFDLDLLIEHL 77 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcC-----cceEeeccccccchhhcCHhhcCCcC--ccChhhhcHHHHHHHH
Confidence 4689999999999999999999983 4433 22221110000000000000001001 1113456777788888
Q ss_pred HHHhcCce
Q 047642 263 YEFLEGRR 270 (718)
Q Consensus 263 ~~~L~~k~ 270 (718)
...+.+++
T Consensus 78 ~~L~~g~~ 85 (218)
T COG0572 78 KDLKQGKP 85 (218)
T ss_pred HHHHcCCc
Confidence 88888887
No 255
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.021 Score=53.71 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=60.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC--CCCHHHHHHHHHHHhcC--Cccc--chHHhhh-cCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ--EYTTRDLLQKTIKSFQK--PKIE--DLELMER-MTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~l~~i~~~l~~--~~~~--~~~~~~~-~~~~~ 257 (718)
.+++|+|..|.|||||.+.++.- .....+.+++.-.. ....... + ..+.- .... ...-.+. .+..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~---~~~~~G~i~~~g~~~~~~~~~~~-~---~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL---YDPTSGEILIDGVDLRDLDLESL-R---KNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC---CCCCCCEEEECCEEhhhcCHHHH-H---hhEEEEcCCchhccchHHHHhhCHHH
Confidence 48999999999999999999983 22334444432111 0111111 1 11110 0000 0000000 11122
Q ss_pred H-HHHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 258 L-ELHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 258 l-~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
. .-.+-..+..++-+++||+-... ...+.+...+.....+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 22345556677789999997532 2223333333222235778889988876654
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.29 E-value=0.0038 Score=56.44 Aligned_cols=44 Identities=32% Similarity=0.330 Sum_probs=32.2
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 164 VGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
||.-..++++.+.+..-.....-|.|+|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56667777777777654333456789999999999999999985
No 257
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.28 E-value=0.0035 Score=60.87 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=83.0
Q ss_pred hhhccCCceEEEEEecCCcccccccccccch----hhhhcccccEEeeccCCcccccc--------------cccccCCC
Q 047642 552 QTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD----SIGKLIHLRYFGFKCNSLVEFPR--------------SIGNLQCL 613 (718)
Q Consensus 552 ~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~----~i~~l~~L~~L~l~~~~l~~lp~--------------~i~~l~~L 613 (718)
...+-+|+.|+..+|+.|.|.. . .|+ .|+.-+.|..|.|++|.+..+.. .+.+-+.|
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~--~---~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGS--E---FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHHhcCCcceeeeccccccCc--c---cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 3445677778888888777653 3 443 34455677777777777653321 12234567
Q ss_pred cEEEecCccccccChhhc-----cccccceeee--cccCcccC--------CCccccccccceecc------ccchHHhc
Q 047642 614 KTMVASGNSCWKLPSQIS-----KLHQLRHLIA--RPLGHLQV--------STLTNLQTLKYVNFQ------QWDAVDAR 672 (718)
Q Consensus 614 ~~L~l~~~~i~~lp~~i~-----~L~~L~~L~l--~~~~p~~~--------~~l~~L~~L~~~~~~------~~~~~~l~ 672 (718)
++.+...|++..-|...+ .=.+|+.+.+ ++.-|.++ ..+.+|+.|++.+|. ......+.
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 777777776665554321 1134555554 44445432 345566666666664 12233344
Q ss_pred ccCCCCeEEEeec------cccHHHHhhc--cCCCCeEEEeeCCC
Q 047642 673 NLINLQELEIREI------PYTNMNFILQ--VNSLRSLTLQTDTA 709 (718)
Q Consensus 673 ~l~~L~~L~l~~~------~~~~~~~l~~--l~~L~~L~l~~~~~ 709 (718)
.-+.|+.|.+..| ...+...+.. .++|..|-...|..
T Consensus 240 ~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 240 EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 5555666666666 1222233332 25666666665543
No 258
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.27 E-value=0.016 Score=60.67 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=38.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..++|....++++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999888866543345688999999999999999986
No 259
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.031 Score=55.14 Aligned_cols=125 Identities=14% Similarity=0.264 Sum_probs=68.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcc-----cc--C----CC---ceEEEEEecCCCC------HH---------------
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTD-----VK--G----GF---DCRAWVCVTQEYT------TR--------------- 229 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~-----~~--~----~F---~~~~wv~vs~~~~------~~--------------- 229 (718)
.+++|+|+.|.|||||.+.+..-.. +. + .+ ..+.||+=...++ +.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5999999999999999999998211 11 0 01 2355553211111 11
Q ss_pred -------HHHHHHHHHhcCCcccchHHhhhcCHHHHHH-HHHHHhcCceEEEEEecCCC------hhhhhHHHhhCCCCC
Q 047642 230 -------DLLQKTIKSFQKPKIEDLELMERMTEEDLEL-HLYEFLEGRRYLVVVDDIWH------KSAWESLRRAFPDNG 295 (718)
Q Consensus 230 -------~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~L~~k~~LlVLDdv~~------~~~~~~l~~~l~~~~ 295 (718)
+...+.++.++-....+ ..+...+-.+.++ .+-+.|..++=|+|||.=.. ....-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRD-RQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhC-CcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 22223333333211000 0123334444443 35567788899999997432 23344444444433
Q ss_pred CCcEEEEEecchhhhhh
Q 047642 296 NGSRIVITTRNEPVAMI 312 (718)
Q Consensus 296 ~gsriivTTR~~~v~~~ 312 (718)
|..|+++|-+-+....
T Consensus 189 -g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 -GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -CCEEEEEeCCcHHhHh
Confidence 8899999998865543
No 260
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.23 E-value=0.024 Score=52.78 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=60.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC--CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHH-HHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ--EYTTRDLLQKTIKSFQKPKIEDLELMERMTEED-LELH 261 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~ 261 (718)
.+++|+|..|.|||||.+.++.- .....+.+++.-.. ..+..+..+. .++- ....+..+ ..-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~~---~i~~--------~~qLS~G~~qrl~ 92 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARRA---GIAM--------VYQLSVGERQMVE 92 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHhc---CeEE--------EEecCHHHHHHHH
Confidence 48999999999999999999873 23344555543211 1111111110 0100 00022222 2223
Q ss_pred HHHHhcCceEEEEEecCCCh---hhhhHHHhhCCC-CCCCcEEEEEecchhhhh
Q 047642 262 LYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPD-NGNGSRIVITTRNEPVAM 311 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gsriivTTR~~~v~~ 311 (718)
+-..+..++-++++|+-... ...+.+...+.. ...|..||++|.+...+.
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45566677888999997532 233333333322 123677888888876443
No 261
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.0035 Score=61.55 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=39.4
Q ss_pred CCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+|||-++-++++.-++... +..+-.|.++|++|.||||||.-+.+.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 357999998888877666543 446779999999999999999999994
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.19 E-value=0.057 Score=50.48 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=58.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEE-------EecCCCC--HHHHHHHHHHHhcCCcccchHHhhhcCH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV-------CVTQEYT--TRDLLQKTIKSFQKPKIEDLELMERMTE 255 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~ 255 (718)
.+++|+|..|.|||||++.+..-... ..+.+++ .+.+.+. ...+...+... . . ...+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~--~------~~LS~ 94 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--W--D------DVLSG 94 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc--C--C------CCCCH
Confidence 48999999999999999999884221 1222211 2233321 11222222110 0 0 11122
Q ss_pred H-HHHHHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecchhhhh
Q 047642 256 E-DLELHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRNEPVAM 311 (718)
Q Consensus 256 ~-~l~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~~~v~~ 311 (718)
. ...-.+...+..++-++++|+--.. .....+...+... +..||++|.+.....
T Consensus 95 G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 2 2223355556677788899986532 2223333333222 466888888877654
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.17 E-value=0.042 Score=51.81 Aligned_cols=100 Identities=16% Similarity=0.044 Sum_probs=55.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE------ecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHH-H
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC------VTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEE-D 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~-~ 257 (718)
.+++|+|..|.|||||.+.+..-. ....+.+++. +.+... .+.. .
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------------LSgGq~ 77 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------------LSGGEL 77 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------------CCHHHH
Confidence 499999999999999999998732 2223333321 111111 1111 1
Q ss_pred HHHHHHHHhcCceEEEEEecCCC---hhhhhHHHhhCCC--CCCCcEEEEEecchhhhhh
Q 047642 258 LELHLYEFLEGRRYLVVVDDIWH---KSAWESLRRAFPD--NGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 258 l~~~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~--~~~gsriivTTR~~~v~~~ 312 (718)
..-.+...+..++-++++|+-.. ....+.+...+.. ...+..||++|.+......
T Consensus 78 qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 78 QRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 22234555667778999998753 2222333333321 1123568888887765553
No 264
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.017 Score=63.62 Aligned_cols=98 Identities=21% Similarity=0.114 Sum_probs=56.3
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++--...+++..+.....--...-|.|.|..|+|||+||+++++... +.+.-.+..|+.+.-.... +..|-
T Consensus 408 ~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~--~e~iQ---- 480 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSS--LEKIQ---- 480 (952)
T ss_pred CceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchh--HHHHH----
Confidence 4455444444544444433322345789999999999999999999543 3343334455444321100 11111
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..+.....+.+...+-+|||||++.
T Consensus 481 ---------------k~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 481 ---------------KFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred ---------------HHHHHHHHHHHhhCCcEEEEcchhh
Confidence 1222334455667889999999973
No 265
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.16 E-value=0.039 Score=63.26 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=80.8
Q ss_pred ceeeccccHHHHHHHHh---cCC-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHH
Q 047642 162 QVVGFEENTKMLIKQLL---KDE-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDL 231 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 231 (718)
++.|.+..++++.+.+. ... .-.+-|.|+|++|+||||+|+.+.+. ....| +.++.. ++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~----~~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS----DF 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----Hh
Confidence 46676666665544432 210 11335899999999999999999883 33333 222211 11
Q ss_pred HHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------------hh----hhHHHhhCCCC-
Q 047642 232 LQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------------SA----WESLRRAFPDN- 294 (718)
Q Consensus 232 l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------------~~----~~~l~~~l~~~- 294 (718)
.....+ .....+...+...-...+.+|++|+++.. .. ...+...+...
T Consensus 222 ----~~~~~g-----------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~ 286 (644)
T PRK10733 222 ----VEMFVG-----------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 286 (644)
T ss_pred ----HHhhhc-----------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc
Confidence 111101 01122222233333456789999998653 11 22232223221
Q ss_pred -CCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 295 -GNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 295 -~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
..+.-+|.||...+..... +-....+.+...+.++-.+++..+.-.
T Consensus 287 ~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 287 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 2344455577766543211 111256778888888888888776543
No 266
>PRK13695 putative NTPase; Provisional
Probab=96.16 E-value=0.0042 Score=58.67 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 267
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.15 E-value=0.02 Score=55.14 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=43.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccC-CCc---eEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKG-GFD---CRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~---~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
||+|.|.+|+||||+|+.+... ... ... ....++...-+....... .-........ .......+.+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~--~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRD-RKGRGENRYN--FDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHH-HHHHCTTTSS--TTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhh-HhhccccccC--CCCccccCHHHHHHH
Confidence 7999999999999999999883 332 222 123333222222222211 1111111100 011245667777777
Q ss_pred HHHHhcCceEE
Q 047642 262 LYEFLEGRRYL 272 (718)
Q Consensus 262 l~~~L~~k~~L 272 (718)
+.....++..-
T Consensus 76 l~~L~~g~~i~ 86 (194)
T PF00485_consen 76 LKALKNGGSIE 86 (194)
T ss_dssp HHHHHTTSCEE
T ss_pred HHHHhCCCccc
Confidence 77766666543
No 268
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.052 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 269
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.14 E-value=0.0025 Score=37.01 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=14.6
Q ss_pred cccEEeeccCCcccccccccc
Q 047642 589 HLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+|++|+|++|+++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777776554
No 270
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.12 Score=58.54 Aligned_cols=156 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred CCceeeccccHHHH---HHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKML---IKQLLKDE-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.++.|.++.+++| +++|.++. .-++=+.++|++|+|||-||++++-. ..-. |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGE--AgVP-----F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP-----FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcc--cCCc-----eeeechH----
Confidence 34678887766555 55554431 23677899999999999999999984 3323 3444432
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh-----------------hhhhHHHhhC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK-----------------SAWESLRRAF 291 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~-----------------~~~~~l~~~l 291 (718)
+.++.+.+.. ...++.+-..- ...+.+|.+|+++.. ..++++..-+
T Consensus 379 ----EFvE~~~g~~------------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em 442 (774)
T KOG0731|consen 379 ----EFVEMFVGVG------------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM 442 (774)
T ss_pred ----HHHHHhcccc------------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh
Confidence 1222222111 11122222222 345778888887632 1355665555
Q ss_pred CCCCCCcEE--EEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhCCCC
Q 047642 292 PDNGNGSRI--VITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAFPDT 342 (718)
Q Consensus 292 ~~~~~gsri--ivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af~~~ 342 (718)
..+..++.| +-+|+..++.... +-....+.++.-+.....++|..++-.-.
T Consensus 443 Dgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 443 DGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred cCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence 544434433 3355555554221 11225677777788888889988875443
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.038 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0046 Score=55.45 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..-|+|.||+|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999984
No 273
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.15 Score=49.05 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=84.4
Q ss_pred cee-eccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 162 QVV-GFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 162 ~~v-Gr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
++| |.+..+++|.+.+.-+ =.+++-+.++|++|.|||-||++|+++ .++-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 355 4677778877766422 135778899999999999999999984 33445666643
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh----cCceEEEEEecCCCh------------hh----hhHHHh
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL----EGRRYLVVVDDIWHK------------SA----WESLRR 289 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~k~~LlVLDdv~~~------------~~----~~~l~~ 289 (718)
++++..-+ +..+.+++.+ ..-+..|..|.+++. .+ .-++..
T Consensus 216 ----elvqk~ig---------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 216 ----ELVQKYIG---------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred ----HHHHHHhh---------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 11111111 1111222221 235678888988753 11 112334
Q ss_pred hCCC--CCCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 290 AFPD--NGNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 290 ~l~~--~~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+.. ..+.-|||..|..-++.... +--...++.++-+++.-.++++-+.
T Consensus 277 qldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred hccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 4442 23567888888766654322 1112456777777766667776554
No 274
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.10 E-value=0.031 Score=57.83 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=41.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc----CCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVK----GGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
.-.++-|+|.+|+|||+|+.+++-..... +.-..++|++....|+++++. ++++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 45799999999999999998876422221 112468899999889888764 45666554
No 275
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.10 E-value=0.054 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999973
No 276
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.10 E-value=0.029 Score=58.26 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---C-CCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK---G-GFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
.+-++|..+=..-.++.|+|.+|+|||||+..++...... + .-..++|+.....|...+ +.++.+.++.
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 3334444332346799999999999999999887532221 1 123568999888888876 4445555443
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.09 E-value=0.032 Score=58.23 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=41.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccc----cCCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDV----KGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
.-.++-|+|.+|+|||+|+..++-.... .+.-..++|+.....|+++++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4578899999999999999988642222 11124688999999999887644 5666554
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.08 E-value=0.021 Score=58.45 Aligned_cols=25 Identities=44% Similarity=0.529 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++++|+|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999998874
No 279
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.023 Score=53.55 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=61.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcC--CcccchH---Hhhh--cCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK--PKIEDLE---LMER--MTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~--~~~~~~~---~~~~--~~~~~ 257 (718)
.+++|+|..|.|||||++.+.... ....+.+++.-....... ...-..+.- +.....+ ..+. .+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 489999999999999999998832 233445554211100000 011111110 0000000 0000 22222
Q ss_pred HH-HHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCC-CCCCcEEEEEecchhhhhh
Q 047642 258 LE-LHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPD-NGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 258 l~-~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~ 312 (718)
.+ -.+-..+..++-++++|+-... ...+.+...+.. ...|..||++|.+...+..
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22 2355667778889999997542 222333333321 1236778999988876553
No 280
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.06 E-value=0.011 Score=60.05 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=68.9
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc-cccCCCceEE-E---EEecCCCC-----HHH----
Q 047642 165 GFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNST-DVKGGFDCRA-W---VCVTQEYT-----TRD---- 230 (718)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~-w---v~vs~~~~-----~~~---- 230 (718)
+|..+..--+++|++++ ...|.+.|.+|.|||.||-+..=.. ..++.|...+ . +.+.++.. .++
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 35555555667777765 8899999999999999986554321 1234443322 1 23333211 111
Q ss_pred HHHHHHHH---hcCCcccchHHhhhcCHHHHHHHH---------HHHhcCc---eEEEEEecCCChhhhhHHHhhCCCCC
Q 047642 231 LLQKTIKS---FQKPKIEDLELMERMTEEDLELHL---------YEFLEGR---RYLVVVDDIWHKSAWESLRRAFPDNG 295 (718)
Q Consensus 231 ~l~~i~~~---l~~~~~~~~~~~~~~~~~~l~~~l---------~~~L~~k---~~LlVLDdv~~~~~~~~l~~~l~~~~ 295 (718)
-++.|... +..... .....+...+ ..+.+|+ +-+||+|...+... .+++..+...+
T Consensus 306 Wmq~i~DnLE~L~~~~~--------~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G 376 (436)
T COG1875 306 WMQAIFDNLEVLFSPNE--------PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAG 376 (436)
T ss_pred hHHHHHhHHHHHhcccc--------cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhcc
Confidence 12222221 111110 0111111111 1234453 57899999987543 23344455678
Q ss_pred CCcEEEEEecc
Q 047642 296 NGSRIVITTRN 306 (718)
Q Consensus 296 ~gsriivTTR~ 306 (718)
.||||+.|---
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 99999998653
No 281
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.05 E-value=0.066 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 282
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.05 E-value=0.035 Score=58.01 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=41.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCC----CceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGG----FDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
+.-.++-|+|.+|+|||++|.+++-....... =..++||+....|++.++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 34579999999999999999998764222111 1368899998888887654 4445444
No 283
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.03 E-value=0.012 Score=60.77 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
.-+++-|+|++|+||||||.+++.. ....-..++|+.....+++. .++.++..... +-.....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~-l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDN-LLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHH-heecCCCCHHHHHHHH
Confidence 4578999999999999999998763 33334567898877776653 34444432110 0001222345555555
Q ss_pred HHHhcC-ceEEEEEecCC
Q 047642 263 YEFLEG-RRYLVVVDDIW 279 (718)
Q Consensus 263 ~~~L~~-k~~LlVLDdv~ 279 (718)
...++. .--+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 555443 45689999875
No 284
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.16 Score=52.75 Aligned_cols=153 Identities=9% Similarity=0.098 Sum_probs=83.9
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ce-----EEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DC-----RAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
.+.+...+..+. -.....++|+.|+||+++|+.+..-.--.... .| +-++..+..+|...+ .
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E- 80 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c-
Confidence 345555554432 35678899999999999999887731111100 00 001111111111100 0
Q ss_pred CcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 047642 242 PKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMIT 313 (718)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~ 313 (718)
+. .-.....++..+ +.+.+ .+++=++|+|+++.. ...+.+...+..-..++.+|++|.+. .+....
T Consensus 81 p~-----~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 81 PI-----DNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred cc-----cCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 00 001122333322 22322 355668889999864 45677777777656677777777655 333222
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
......+.+.+++.++..+.+....
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHh
Confidence 2223678999999999988887653
No 285
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.01 E-value=0.011 Score=61.13 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=23.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+..++|||++|+|||.+|+++++.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999994
No 286
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.99 E-value=0.049 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999874
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.99 E-value=0.034 Score=55.31 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=55.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccch--------H----H
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDL--------E----L 249 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~--------~----~ 249 (718)
+.-.++.|+|.+|+|||+||.++.... .+ +-..++|++..+. ..++++++ .+++....... + .
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 345799999999999999999986531 22 3346788888654 34444442 33332111000 0 0
Q ss_pred --hhhcCHHHHHHHHHHHhcC-ceEEEEEecCC
Q 047642 250 --MERMTEEDLELHLYEFLEG-RRYLVVVDDIW 279 (718)
Q Consensus 250 --~~~~~~~~l~~~l~~~L~~-k~~LlVLDdv~ 279 (718)
....+.+++...+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 55689999975
No 288
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.059 Score=52.70 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 289
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.98 E-value=0.035 Score=52.29 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=60.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC--CCCHHHHHHHHHHHhcCCcccchHHhhh-cCHHH-HHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ--EYTTRDLLQKTIKSFQKPKIEDLELMER-MTEED-LEL 260 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~l~~i~~~l~~~~~~~~~~~~~-~~~~~-l~~ 260 (718)
.+++|+|..|.|||||.+.+..- .....+.+++.-.. ........+.+.-...........-.+. .+..+ ..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~---~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL---LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc---cCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 48999999999999999999973 22333444432110 1111111111100000000000000000 12222 222
Q ss_pred HHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCC-CCCCcEEEEEecchhhhhh
Q 047642 261 HLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPD-NGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~ 312 (718)
.+-..+..++-+++||+-... .....+...+.. ...|..||++|.+......
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS 161 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 344556667778999997532 222333333321 1246778899888876643
No 290
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.97 E-value=0.012 Score=54.93 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=67.1
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh-hcccccEEeeccCCcccccc--c
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG-KLIHLRYFGFKCNSLVEFPR--S 606 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~-~l~~L~~L~l~~~~l~~lp~--~ 606 (718)
..+...+.+.+|.... ...|..++.|..|.|++|.|+ . +-+.+. .+++|..|.|.+|+|.++-+ .
T Consensus 41 ~d~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt---~---I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRIT---R---IDPDLDTFLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred ccccceecccccchhh------cccCCCccccceEEecCCcce---e---eccchhhhccccceEEecCcchhhhhhcch
Confidence 4445556666665421 244667788888888888887 5 544454 44568888888888876642 2
Q ss_pred ccccCCCcEEEecCccccccCh----hhccccccceeee
Q 047642 607 IGNLQCLKTMVASGNSCWKLPS----QISKLHQLRHLIA 641 (718)
Q Consensus 607 i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l 641 (718)
+..++.|++|.+-+|.++..+. -++.+++|+.|+.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 4556778888888887776543 2677788888876
No 291
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.064 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 292
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.0037 Score=60.76 Aligned_cols=83 Identities=23% Similarity=0.220 Sum_probs=60.7
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccc---ccccccccCCCcEEEecCccccccCh---
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE---FPRSIGNLQCLKTMVASGNSCWKLPS--- 628 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~i~~lp~--- 628 (718)
|..|++|+.|.++.|.+..... ++-....+++|++|++++|+|+. ++ .+.++.+|..|++.+|..+.+-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~---l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGG---LEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCccccccc---ceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHH
Confidence 5568899999999994332114 66556677999999999999874 33 25678889999999987665532
Q ss_pred -hhccccccceeee
Q 047642 629 -QISKLHQLRHLIA 641 (718)
Q Consensus 629 -~i~~L~~L~~L~l 641 (718)
-|.-|++|.+|+-
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 2566788988876
No 293
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.94 E-value=0.025 Score=59.19 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.1
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 163 VVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+||....++++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777778877777654333456889999999999999999874
No 294
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.94 E-value=0.061 Score=57.99 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998888763
No 295
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.94 E-value=0.092 Score=51.56 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.93 E-value=0.068 Score=52.05 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999999884
No 297
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.93 E-value=0.0053 Score=54.50 Aligned_cols=21 Identities=48% Similarity=0.746 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 047642 187 ISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~ 207 (718)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999984
No 298
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.91 E-value=0.04 Score=53.07 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHh
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELM 250 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~ 250 (718)
.+.+..+.... -+++.|.|.+|+||||+++.+.......+ ..+.+..... .....+.+..+.....
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~----~Aa~~L~~~~~~~a~T----- 72 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTN----KAAKELREKTGIEAQT----- 72 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSH----HHHHHHHHHHTS-EEE-----
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcH----HHHHHHHHhhCcchhh-----
Confidence 34444444332 35788999999999999999887422222 2333332222 1222233332221111
Q ss_pred hhcCHHHHHHHHHH-Hh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEe
Q 047642 251 ERMTEEDLELHLYE-FL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITT 304 (718)
Q Consensus 251 ~~~~~~~l~~~l~~-~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTT 304 (718)
.......... .. ..++-+||+|++... ..+..+....+. .|+|+|+.=
T Consensus 73 ----i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 73 ----IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp ----HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ----HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0000000000 00 123459999999854 467777776664 577888664
No 299
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.90 E-value=0.0081 Score=59.54 Aligned_cols=27 Identities=41% Similarity=0.502 Sum_probs=24.0
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 181 EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 181 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.....+|+|.|..|.|||||++.+..-
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999873
No 300
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.082 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 301
>PRK04040 adenylate kinase; Provisional
Probab=95.90 E-value=0.027 Score=53.76 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999883
No 302
>PRK04132 replication factor C small subunit; Provisional
Probab=95.89 E-value=0.6 Score=54.58 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=85.0
Q ss_pred cCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCce
Q 047642 192 MGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRR 270 (718)
Q Consensus 192 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~ 270 (718)
+.|+||||+|..++++. ....++ ..+-++.+...... .+++++..+..... .-..+.
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~--------------------~~~~~~ 631 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP--------------------IGGASF 631 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC--------------------cCCCCC
Confidence 67899999999999952 112222 24455666543333 34444443321111 001245
Q ss_pred EEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCc
Q 047642 271 YLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQA 347 (718)
Q Consensus 271 ~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~ 347 (718)
-++|+|+++.. +..+.|...+..-....++|.+|.+. .+..........+++.+++.++-.+.+...+-.....
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--- 708 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--- 708 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC---
Confidence 79999999865 46777777776544566666655544 3333333333689999999998887777655322211
Q ss_pred CCCCchHHHHHHHHHHHhcc
Q 047642 348 TVCSPGLEKLGREMVEKCRE 367 (718)
Q Consensus 348 ~~~~~~l~~~~~~I~~~c~~ 367 (718)
.+ .+....|++.|++
T Consensus 709 --i~---~e~L~~Ia~~s~G 723 (846)
T PRK04132 709 --LT---EEGLQAILYIAEG 723 (846)
T ss_pred --CC---HHHHHHHHHHcCC
Confidence 11 3456677777754
No 303
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.89 E-value=0.066 Score=53.62 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999884
No 304
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.89 E-value=0.076 Score=56.07 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=91.3
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCccccCCCceEEEEEecCC---CCHHHHHHHHHHHhc-
Q 047642 166 FEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLA-RKLVNSTDVKGGFDCRAWVCVTQE---YTTRDLLQKTIKSFQ- 240 (718)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~l~~i~~~l~- 240 (718)
|.+.+++|..||.+.. -..|.|.|+-|+||+.|+ .++..+.+. ++.+.+.+- -+...+++..+.+++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 5677899999998865 358999999999999999 777775221 333332221 122233333333332
Q ss_pred ----------------------CCcccchHHhhhcCHHHHHHHH-------HH-------------------Hhc---Cc
Q 047642 241 ----------------------KPKIEDLELMERMTEEDLELHL-------YE-------------------FLE---GR 269 (718)
Q Consensus 241 ----------------------~~~~~~~~~~~~~~~~~l~~~l-------~~-------------------~L~---~k 269 (718)
+.... +......++...+ ++ +|. .+
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaG----fSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAG----FSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccC----CCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 21100 1111122222211 11 121 23
Q ss_pred eEEEEEecCCChh-----hhhHHHh---hCCCCCCCcEEEEEecchhhhhhcC----C-CCceeeccCCCHHhHHHHHHh
Q 047642 270 RYLVVVDDIWHKS-----AWESLRR---AFPDNGNGSRIVITTRNEPVAMITD----E-KNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 270 ~~LlVLDdv~~~~-----~~~~l~~---~l~~~~~gsriivTTR~~~v~~~~~----~-~~~~~~l~~L~~~es~~Lf~~ 336 (718)
+-+||+|+..... .|+.|.. .+ -..+-..||++|-+........ . ..+.+.+...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L-v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL-VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH-HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999986431 1233221 11 1234568999888776554332 1 125788899999999999888
Q ss_pred hhCC
Q 047642 337 KAFP 340 (718)
Q Consensus 337 ~af~ 340 (718)
+.-.
T Consensus 228 ~L~~ 231 (431)
T PF10443_consen 228 QLDE 231 (431)
T ss_pred Hhcc
Confidence 7654
No 305
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.88 E-value=0.013 Score=60.29 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
+.-+++-|+|++|+||||||.++... ....-..++|+...+.++.. .+++++..... +-.....+.++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~-l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDN-LLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHH-eEEecCCCHHHHHHH
Confidence 34579999999999999999987764 33333457788777666653 34444432110 000122234444555
Q ss_pred HHHHhc-CceEEEEEecCC
Q 047642 262 LYEFLE-GRRYLVVVDDIW 279 (718)
Q Consensus 262 l~~~L~-~k~~LlVLDdv~ 279 (718)
+...++ +..-+||+|-|.
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555443 356689999975
No 306
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.88 E-value=0.052 Score=54.60 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=54.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCcccc----CCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH---hhhcCHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVK----GGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL---MERMTEE 256 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~---~~~~~~~ 256 (718)
-.+.=|+|.+|+|||.||.+++-...+. +.=..++|++-...|..+++. +|++.........+.. ....+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4589999999999999998876543322 222458899988889888764 5666543221110110 1112333
Q ss_pred HHHHH---HHHHhc-CceEEEEEecCC
Q 047642 257 DLELH---LYEFLE-GRRYLVVVDDIW 279 (718)
Q Consensus 257 ~l~~~---l~~~L~-~k~~LlVLDdv~ 279 (718)
++... +...+. .+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 33333 333332 344589999874
No 307
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.02 Score=63.32 Aligned_cols=73 Identities=26% Similarity=0.364 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
.-++..++|++|+||||||.-++.+ ..| .++=|+.|..-+...+-..|...+...
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~-------------------- 379 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNH-------------------- 379 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhc--------------------
Confidence 4579999999999999999999984 223 355666666655544433333333211
Q ss_pred HHHh--cCceEEEEEecCCCh
Q 047642 263 YEFL--EGRRYLVVVDDIWHK 281 (718)
Q Consensus 263 ~~~L--~~k~~LlVLDdv~~~ 281 (718)
..| .+++..||+|.++..
T Consensus 380 -s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 380 -SVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred -cccccCCCcceEEEecccCC
Confidence 122 257888999999864
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.86 E-value=0.049 Score=51.33 Aligned_cols=22 Identities=50% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998873
No 309
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.86 E-value=0.037 Score=62.41 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=40.4
Q ss_pred CCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 159 GNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
....++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 4457999999999999888654333446789999999999999999984
No 310
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.00061 Score=66.21 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=60.4
Q ss_pred cCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChh--hccc
Q 047642 556 SSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQ--ISKL 633 (718)
Q Consensus 556 ~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~--i~~L 633 (718)
+.+.+.+-|++.||.++ . + +-+..|+.|+.|.||-|+|+.|- .+..+++|+.|.|+.|.|.++-.- +.+|
T Consensus 16 sdl~~vkKLNcwg~~L~---D---I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLD---D---I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred hHHHHhhhhcccCCCcc---H---H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 44666788899999987 3 2 44678999999999999999887 477889999999999988877542 4566
Q ss_pred cccceeee
Q 047642 634 HQLRHLIA 641 (718)
Q Consensus 634 ~~L~~L~l 641 (718)
++|+.|.+
T Consensus 88 psLr~LWL 95 (388)
T KOG2123|consen 88 PSLRTLWL 95 (388)
T ss_pred chhhhHhh
Confidence 66666655
No 311
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.036 Score=51.27 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=61.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC--CHHHHHHHHHHHhcCCcccchHHhhhcCH-HHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY--TTRDLLQKTIKSFQKPKIEDLELMERMTE-EDLELH 261 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~l~~i~~~l~~~~~~~~~~~~~~~~-~~l~~~ 261 (718)
.+++|+|..|.|||||++.+... -......+++.-.... ..... ...+.-. ...+. +...-.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~---~~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~--------~qlS~G~~~r~~ 90 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL---LKPTSGEILIDGKDIAKLPLEEL----RRRIGYV--------PQLSGGQRQRVA 90 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCccEEEECCEEcccCCHHHH----HhceEEE--------eeCCHHHHHHHH
Confidence 58999999999999999999983 2234555554322111 11111 1111100 00111 122223
Q ss_pred HHHHhcCceEEEEEecCCC---hhhhhHHHhhCCC-CCCCcEEEEEecchhhhhhc
Q 047642 262 LYEFLEGRRYLVVVDDIWH---KSAWESLRRAFPD-NGNGSRIVITTRNEPVAMIT 313 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~~ 313 (718)
+...+...+-++++|+... ......+...+.. ...+..++++|.+.......
T Consensus 91 l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 91 LARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5555666778999999763 2233333333321 11256788888887766554
No 312
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.84 E-value=0.087 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 313
>PTZ00301 uridine kinase; Provisional
Probab=95.83 E-value=0.0086 Score=58.06 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 314
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.02 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|..|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 315
>PRK09354 recA recombinase A; Provisional
Probab=95.81 E-value=0.025 Score=58.80 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
+.-+++-|+|++|+||||||.++... ....-..++|+.....+++. .++.++..... +-.....+.++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~-lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDN-LLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHH-eEEecCCCHHHHHHH
Confidence 34579999999999999999988764 33344567899888777753 34444432110 000112234455555
Q ss_pred HHHHhc-CceEEEEEecCC
Q 047642 262 LYEFLE-GRRYLVVVDDIW 279 (718)
Q Consensus 262 l~~~L~-~k~~LlVLDdv~ 279 (718)
+...++ ++--+||+|-|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555543 356699999985
No 316
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.076 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.6
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+++|+|..|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 317
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.80 E-value=0.046 Score=57.13 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc---C-CCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 173 LIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK---G-GFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
+-++|..+=..-.++-|+|.+|+|||+||..++-..... + .-..++|++....|.++++ .+|++.++.
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 333443332345789999999999999998877432221 1 1125889999999988875 455666543
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=95.79 E-value=0.051 Score=56.60 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+.+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998887776
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=95.78 E-value=0.04 Score=59.36 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877766
No 320
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.18 Score=52.13 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=45.1
Q ss_pred CceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHh
Q 047642 268 GRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 268 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
+++-++|+|+++.. ..-+.+...+..-..++.+|++|.+. .+..-.......+.+.+++.++..+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH
Confidence 45668999999854 34555666665545567676666644 44333223336788999999998887764
No 321
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.76 E-value=0.0076 Score=58.84 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999984
No 322
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.74 E-value=0.037 Score=59.42 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=48.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCc-----ccchHHhhhc----C
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPK-----IEDLELMERM----T 254 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~----~ 254 (718)
-..++|+|..|+|||||++.+.... ....+++|+.--+.-+..++....+....... ..+.+..... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3489999999999999999998732 22234444432233344444443333321110 0000111111 1
Q ss_pred HHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 255 EEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 255 ~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
.-..++.++. +++.+|+++||+-.
T Consensus 242 a~~iAEyfrd--~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRD--RGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHH--cCCCEEEeccchHH
Confidence 1123344443 58999999999854
No 323
>PRK08233 hypothetical protein; Provisional
Probab=95.72 E-value=0.008 Score=57.16 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 324
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.71 E-value=0.045 Score=53.45 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEE-------EEecCCCCHHHH--HHHHHHHhcCCccc-chHH--
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAW-------VCVTQEYTTRDL--LQKTIKSFQKPKIE-DLEL-- 249 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-------v~vs~~~~~~~~--l~~i~~~l~~~~~~-~~~~-- 249 (718)
+.+..|.++||+|+||||..+.++.+...+..=..++= |...-+.|+++. .++.+++-+..... ....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 35678999999999999999999986332222111111 122333455554 45667765542221 1111
Q ss_pred hhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCc
Q 047642 250 MERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGS 298 (718)
Q Consensus 250 ~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs 298 (718)
.-....++....+.+.-..-+|.|| |--... ..|.|.+.|+
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~li-DTPGQI-------E~FtWSAsGs 137 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLI-DTPGQI-------EAFTWSASGS 137 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEE-cCCCce-------EEEEecCCcc
Confidence 1223455666666665555455443 432221 2345666666
No 325
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.71 E-value=0.12 Score=50.14 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999884
No 326
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.24 Score=51.74 Aligned_cols=70 Identities=10% Similarity=0.107 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecc-hhhhhhcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 268 GRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRN-EPVAMITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 268 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~-~~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
++.-++|+|+++.. +..+.+...+..-..++.+|.+|.+ ..+..........+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 44558889999854 5678888887765667766655555 4444332233367899999999998888764
No 327
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.70 E-value=0.081 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|+|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 328
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.099 Score=54.49 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=40.6
Q ss_pred ceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhh
Q 047642 269 RRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 269 k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
++-++|+|++... ..-+.+...+.....+..+|++|.+.. +..........+.+.+++.++..+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344566888754 334444444443334566777776654 44333333367889999999988777643
No 329
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.69 E-value=0.019 Score=54.60 Aligned_cols=44 Identities=27% Similarity=0.235 Sum_probs=36.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++||-++.++++.-.-.+++ ..-+.|.||+|+||||=+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 468999999888876665544 67788999999999998887776
No 330
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.68 E-value=0.049 Score=54.53 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=55.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccc--cCCCceEEEEEecCCCC-HHHHHHHHHHHhcCCcc------cchHHhhhcCH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDV--KGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKPKI------EDLELMERMTE 255 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~~~------~~~~~~~~~~~ 255 (718)
+.++|.|-.|+|||+|+.++.++..+ +++-+.++++-+.+... ..+++.++...-..... .+.+.......
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 47899999999999999999886431 23356788988888754 34444444332111000 00011111111
Q ss_pred HHHHHHHHHHh---cCceEEEEEecCCCh
Q 047642 256 EDLELHLYEFL---EGRRYLVVVDDIWHK 281 (718)
Q Consensus 256 ~~l~~~l~~~L---~~k~~LlVLDdv~~~ 281 (718)
.-..-.+-+++ .++++|+++||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 11122234444 378999999998643
No 331
>PRK06547 hypothetical protein; Provisional
Probab=95.68 E-value=0.014 Score=54.73 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
....+|+|.|++|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999874
No 332
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.68 E-value=0.048 Score=58.89 Aligned_cols=56 Identities=27% Similarity=0.260 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH--HHHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT--RDLLQKTIKSFQK 241 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~l~~i~~~l~~ 241 (718)
.+.+|.++|.+|+||||.|..++.. ....-..++-|+.. .+.+ .+.++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCC-CCCHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999874 32221223334332 2222 3445555555543
No 333
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.68 E-value=0.032 Score=64.91 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=38.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 46999999999988777654333457889999999999999999984
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.11 Score=55.15 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc--CCCceEEEEEecCCCCHH--HHHHHHHHHhcCCcccchHHhhhcCHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVK--GGFDCRAWVCVTQEYTTR--DLLQKTIKSFQKPKIEDLELMERMTEEDL 258 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~--~~l~~i~~~l~~~~~~~~~~~~~~~~~~l 258 (718)
...+|.++|+.|+||||.+..+....... .+-..+..++.. .+... ..++...+.++.+-. ...+.+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~------~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK------AIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE------eeCcHHHH
Confidence 46799999999999999999888742221 112234444443 33332 234444444443221 11233444
Q ss_pred HHHHHHHhcCceEEEEEecCCCh----hhhhHHHhhCC
Q 047642 259 ELHLYEFLEGRRYLVVVDDIWHK----SAWESLRRAFP 292 (718)
Q Consensus 259 ~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~ 292 (718)
...+... .+.-+|++|..... ..+.++...+.
T Consensus 246 ~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4444432 34568888887532 23445544444
No 335
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.66 E-value=0.1 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 336
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.66 E-value=0.0077 Score=46.91 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 337
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.11 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999983
No 338
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.64 E-value=0.084 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|.|..|.|||||++.+..-
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999984
No 339
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.64 E-value=0.009 Score=58.23 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|+|+|++|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999873
No 340
>PRK06762 hypothetical protein; Provisional
Probab=95.64 E-value=0.0086 Score=56.05 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 341
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.62 E-value=0.1 Score=57.93 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEEEecCCchHHHHHHHHhcCccccCCCceEEEE-------EecCCCCH-------------------HHHHHHHHHHhc
Q 047642 187 ISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV-------CVTQEYTT-------------------RDLLQKTIKSFQ 240 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~~-------------------~~~l~~i~~~l~ 240 (718)
|+|+|+.|+|||||.+.+.. ..... .+.+.+ ...|..+. +.-.+..+..++
T Consensus 351 iaiiG~NG~GKSTLlk~l~g--~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAG--ELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred EEEECCCCCCHHHHHHHHhh--hcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEe------cCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhc
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVD------DIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLD------dv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~ 313 (718)
-+.......+...+-.+-.+.....+ ..+.=++||| |+.+.+.++.....++ |+ ||+.|.++......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhh
Q ss_pred CCCCceeeccC
Q 047642 314 DEKNFVYKLRF 324 (718)
Q Consensus 314 ~~~~~~~~l~~ 324 (718)
.. .++.++.
T Consensus 503 a~--~i~~~~~ 511 (530)
T COG0488 503 AT--RIWLVED 511 (530)
T ss_pred cc--eEEEEcC
No 342
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.62 E-value=0.011 Score=63.86 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=37.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++||++.++.+...+..+. -|.|.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 358999999999998887665 6889999999999999999983
No 343
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0094 Score=65.65 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=43.2
Q ss_pred CCceeeccccHHHHHHHHhc----CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC
Q 047642 160 NEQVVGFEENTKMLIKQLLK----DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF 214 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F 214 (718)
+.+-+|.++-+++|++++-- ++.+-++++.+|++|+|||.+|+.|+. .....|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 44578999999999999853 344568999999999999999999998 454444
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.60 E-value=0.095 Score=54.59 Aligned_cols=58 Identities=10% Similarity=0.203 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccC----CCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKG----GFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
..-.++-|+|.+|+||||++.+++....... .-..++||.....|+..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3467999999999999999999876432211 11268899998888887654 4455443
No 345
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.60 E-value=0.13 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 346
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.58 E-value=0.088 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999974
No 347
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.58 E-value=0.096 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999984
No 348
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.58 E-value=0.14 Score=50.22 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 349
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.58 E-value=0.14 Score=51.55 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 350
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.51 E-value=0.067 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45999999999999999999998
No 351
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.51 E-value=0.076 Score=57.41 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCccc-----cCCCceEEEEEecCCCCHHHHHHHHHHHhcCCccc-------chHH--
Q 047642 185 FVISILGMGGLGKTTLA-RKLVNSTDV-----KGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIE-------DLEL-- 249 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~-------~~~~-- 249 (718)
+-++|.|..|+|||+|| ..+.|...+ .++-+.++++-+.+......-+.+.+++-+.-... +.+.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 47899999999999997 667775422 13445688888888865443344444443310000 0000
Q ss_pred --hhhcCHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 250 --MERMTEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 250 --~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
......-.+.+.++. +++.+|||+||+..
T Consensus 270 r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 001111233444443 58999999999964
No 352
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.1 Score=50.26 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=61.6
Q ss_pred CceeeccccHHHHHHHHh---cCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLL---KDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
..++|.+..++.+++--. .+- ..--|.+||.-|+||+.|++++.+. +.+.+-. -|.|.+.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH------------
Confidence 468999998888875432 221 2346789999999999999999993 4443322 2222221
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCC---hhhhhHHHhhCC
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWH---KSAWESLRRAFP 292 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~ 292 (718)
+-.+...+.+.|+. ...||.|..||+.- .+.+..++..+.
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 00011122222221 35789999999962 346777877776
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.49 E-value=0.097 Score=55.20 Aligned_cols=89 Identities=25% Similarity=0.235 Sum_probs=47.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
-.+++++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+.. ...+..++...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~------~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH------AVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE------ecCCcccHHHHH
Confidence 35899999999999999999987422121123345554222 22344455555555544321 111222333333
Q ss_pred HHHhcCceEEEEEecCCC
Q 047642 263 YEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~ 280 (718)
. .+.++ =+|++|..-.
T Consensus 211 ~-~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 211 A-ELRNK-HMVLIDTIGM 226 (374)
T ss_pred H-HhcCC-CEEEEcCCCC
Confidence 2 34444 4566888753
No 354
>PTZ00035 Rad51 protein; Provisional
Probab=95.49 E-value=0.11 Score=54.39 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc----CCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 175 KQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK----GGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 175 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
++|..+=..-.++.|+|.+|+|||||+..++-..... +.-..++|+.....|++++ +.++.+.++.
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 3443332345799999999999999999887532211 1123466998887788776 4444555443
No 355
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.47 E-value=0.12 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999884
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.46 E-value=0.11 Score=56.37 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=26.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
.+++.++|++|+||||++..+............++.|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 359999999999999998888763220122234555554
No 357
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.46 E-value=0.025 Score=59.73 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=47.1
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ceEEEEEec-C
Q 047642 161 EQVVGFEENTKMLIKQLLKD------------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DCRAWVCVT-Q 224 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs-~ 224 (718)
..+||.++.++.+.-.+..+ ...++-|.++|++|+|||++|+.+... ....| +..-++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45788888888776655532 112467899999999999999999984 44444 222222211 1
Q ss_pred CCCHHHHHHHHHHH
Q 047642 225 EYTTRDLLQKTIKS 238 (718)
Q Consensus 225 ~~~~~~~l~~i~~~ 238 (718)
..+.+.+++.+...
T Consensus 90 G~dvE~i~r~l~e~ 103 (441)
T TIGR00390 90 GRDVESMVRDLTDA 103 (441)
T ss_pred cCCHHHHHHHHHHH
Confidence 22455555555444
No 358
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.45 E-value=0.16 Score=52.62 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=95.44 E-value=0.15 Score=50.21 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=74.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccc-----hHHhhhcCHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIED-----LELMERMTEEDL 258 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~-----~~~~~~~~~~~l 258 (718)
-.++.|.|.+|+|||++|.++..... + +-..+++++.... ..++...+. +++...... .........+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHH
Confidence 45899999999999999998876422 2 2344667665544 444444432 222211100 000111223333
Q ss_pred HHHHHHHhcCceEEEEEecCCCh------hhhhHHHhhCCC--CCCCcEEEEEecchhhhhhcCCCCceeeccCCCHHhH
Q 047642 259 ELHLYEFLEGRRYLVVVDDIWHK------SAWESLRRAFPD--NGNGSRIVITTRNEPVAMITDEKNFVYKLRFLNQEES 330 (718)
Q Consensus 259 ~~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~l~~--~~~gsriivTTR~~~v~~~~~~~~~~~~l~~L~~~es 330 (718)
...+.. ..+.-+||+|-+... .....+...+.. ...|..||+|+.-..-...-........--.++..--
T Consensus 139 i~~l~~--~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~~~d 216 (237)
T PRK05973 139 IARLAS--APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDVRLPNPLD 216 (237)
T ss_pred HHHHHH--hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhcCCCChhh
Confidence 333333 223469999987532 112222111211 2457788888764433221110000110112344455
Q ss_pred HHHHHhhhCCCCC
Q 047642 331 WKLFCKKAFPDTA 343 (718)
Q Consensus 331 ~~Lf~~~af~~~~ 343 (718)
..||.+..|-+..
T Consensus 217 ~~~f~~~~~~~~~ 229 (237)
T PRK05973 217 LSLFDKACFLNNG 229 (237)
T ss_pred HHHhhhhheecCC
Confidence 7788888886543
No 360
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.43 E-value=0.37 Score=49.85 Aligned_cols=152 Identities=10% Similarity=0.031 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC-------CceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG-------FDCRAWVCVTQEYTTRDLLQKTIKSFQKP 242 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------F~~~~wv~vs~~~~~~~~l~~i~~~l~~~ 242 (718)
.+++.+.+..+ .-...+.++|+.|+||+++|..+..-.--... -..+-++.....+|...+ . +
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~-p 81 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------K-P 81 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e-c
Confidence 34555555443 24568999999999999999988763111100 000001111111111000 0 0
Q ss_pred cccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcC
Q 047642 243 KIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITD 314 (718)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~ 314 (718)
.. .......+++. .+.+.+ .++.=++|+|+++.. ...+.+...+..-..++.+|++|.+. .+.....
T Consensus 82 ~~----~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 82 EK----EGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred Cc----CCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 00112233332 222332 234558888999854 46777777777655667666666554 4443333
Q ss_pred CCCceeeccCCCHHhHHHHHHh
Q 047642 315 EKNFVYKLRFLNQEESWKLFCK 336 (718)
Q Consensus 315 ~~~~~~~l~~L~~~es~~Lf~~ 336 (718)
.....+.+.+++.++..+.+..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHH
Confidence 3336789999999999887764
No 361
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.42 E-value=0.086 Score=57.75 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHH-HHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchH
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTT-LARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLE 248 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~ 248 (718)
.++|++.+.+. .||.|||..|.|||| ||+.+|.+--.. .+.+=++-.+......+.+.+.+.++...+...-
T Consensus 361 R~~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~edGY~~---~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 361 RDQLLSVIREN----QVVVIVGETGSGKTTQLAQYLYEDGYAD---NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhccccc---CCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 34555555443 499999999999987 778888752211 1233333333444556677777777543221100
Q ss_pred ---Hhhh----------cCH-HHHHHHHHHHhcCceEEEEEecCCChhh----hhHH-HhhCCCCCCCcEEEEEecchhh
Q 047642 249 ---LMER----------MTE-EDLELHLYEFLEGRRYLVVVDDIWHKSA----WESL-RRAFPDNGNGSRIVITTRNEPV 309 (718)
Q Consensus 249 ---~~~~----------~~~-~~l~~~l~~~L~~k~~LlVLDdv~~~~~----~~~l-~~~l~~~~~gsriivTTR~~~v 309 (718)
.++. ++. --+.+.|....-.|--.||+|....... +-.| ...+. ....-|+||||-..+.
T Consensus 434 YsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la-rRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 434 YSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA-RRRDLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH-hhccceEEEeeccccH
Confidence 0111 111 1122333333344556899999875432 2122 22222 3346799999976655
Q ss_pred hh
Q 047642 310 AM 311 (718)
Q Consensus 310 ~~ 311 (718)
-.
T Consensus 513 ~k 514 (1042)
T KOG0924|consen 513 QK 514 (1042)
T ss_pred HH
Confidence 43
No 362
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=95.41 E-value=0.027 Score=55.76 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-hhccCCChhHHHHHHHHHHhhhhhhhHhhhhh
Q 047642 4 AAVLYAVQRLSDLLTQEAVFLQGVRGEVLWLQRELTRMQGFLKDT-DQQQDTDDGVRRWVSEVRNAAYDAEDIVDTFM 80 (718)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~~~~~i~~l~~~L~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~~~ 80 (718)
+-|.+++++|-++.......+.-++.+++-++.||+++|.||+.. ++....-+..+.++.++...||++|+++|-..
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 457788888888888888888889999999999999999999987 44333334589999999999999999999764
No 363
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.077 Score=56.40 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++.++|++|+||||+|..+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999863
No 364
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.39 E-value=0.062 Score=52.19 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=51.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC-HHHHHHHHHHHhcCCc------ccchHHhhhc----
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKPK------IEDLELMERM---- 253 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~~------~~~~~~~~~~---- 253 (718)
.-++|.|.+|+|||+|+..+.++. .-+..+++.+.+... ..++.+++...-.... ..+.+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 478999999999999999999853 234457888876643 3444444432200000 0000000000
Q ss_pred CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 254 TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 254 ~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..-...+.++. ++|.+|+++||+..
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETHHH
T ss_pred cchhhhHHHhh--cCCceeehhhhhHH
Confidence 01122344444 78999999999843
No 365
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.39 E-value=0.055 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|.+|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 366
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.38 E-value=0.097 Score=50.80 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.37 E-value=0.076 Score=53.86 Aligned_cols=55 Identities=25% Similarity=0.294 Sum_probs=33.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH--HHHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT--RDLLQKTIKSFQ 240 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~l~~i~~~l~ 240 (718)
..++|.++|++|+||||++..++.. ....-..++++... .+.. .+-+....+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCC
Confidence 4689999999999999999888763 32222334555433 3333 233444444444
No 368
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.36 E-value=0.12 Score=49.98 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 369
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.13 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.35 E-value=0.19 Score=47.84 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=32.6
Q ss_pred HHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCC-CCCCcEEEEEecchhhhhhcC
Q 047642 261 HLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPD-NGNGSRIVITTRNEPVAMITD 314 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~~~ 314 (718)
.+-+.|.-++=++.+|..-+. +...++...... ...|-..||.|....-|..+.
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 355667777888999998653 323333222221 235667777778777666553
No 371
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.063 Score=59.99 Aligned_cols=153 Identities=15% Similarity=0.144 Sum_probs=85.8
Q ss_pred ceeeccccHHHHHHHH---hcC--------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHH
Q 047642 162 QVVGFEENTKMLIKQL---LKD--------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRD 230 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L---~~~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 230 (718)
.+.|.+..++.+.+.+ ... -...+.+.++|++|.|||.||+++++ ....+|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~-----~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG-----S----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC-----H-----
Confidence 4556565555554433 221 13456899999999999999999999 34444432221 1
Q ss_pred HHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCCCCCC-
Q 047642 231 LLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPDNGN- 296 (718)
Q Consensus 231 ~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~- 296 (718)
+++....+ .++..+...+...-+..+..|.+|+++.. ....++...+.....
T Consensus 311 ---~l~sk~vG-----------esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 311 ---ELLSKWVG-----------ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred ---HHhccccc-----------hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 11111110 11223333344444678899999999743 123344444442222
Q ss_pred -CcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 297 -GSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 297 -gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
+-.||-||.......-. +-....+.+..-+.++..+.|+.+.-.
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 33345555544433211 112357788888999999999987753
No 372
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.34 E-value=0.036 Score=51.80 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=33.9
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 163 VVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+||....++++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888887664333456779999999999999999994
No 373
>PRK05439 pantothenate kinase; Provisional
Probab=95.31 E-value=0.085 Score=54.16 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.3
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 181 EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 181 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+.+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998887
No 374
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.30 E-value=0.13 Score=52.37 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=36.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++.|.|.+|+||||++.++..... ..+-..++|++... +..++...+...+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~~ 83 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQYA 83 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHHh
Confidence 4888999999999999999877422 22234577887655 44556666655543
No 375
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.12 Score=50.33 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=36.0
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++-|..+.++++.+...-+ =+.++-|.++|++|.|||-+|++|.|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 45667888888887765432 12466788999999999999999999
No 376
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.26 E-value=0.077 Score=59.35 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=41.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...++|....++++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 456999999999999888765444567889999999999999999984
No 377
>PRK03839 putative kinase; Provisional
Probab=95.25 E-value=0.013 Score=55.74 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 378
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.25 E-value=0.14 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.++--
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999874
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.24 E-value=0.082 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999884
No 380
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.23 E-value=0.087 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 381
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.23 E-value=0.14 Score=50.74 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=32.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
-.++.|.|.+|+||||||.++.... .+.. ...++++ ..-+..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 4599999999999999986655531 1222 3456666 333455666665 3343
No 382
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.22 E-value=0.12 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 59999999999999999999863
No 383
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.13 Score=56.26 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=93.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.++||-+.-...|...+..+. -..--...|+-|+||||+|+.+..-.-... | .....++.=..-++|-.. .
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g-~ 86 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEG-S 86 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcC-C
Confidence 457999999999998887753 234556889999999999998876311111 0 000111111111111111 0
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh----cCceEEEEEecCC--ChhhhhHHHhhCCCCCCCcEEEEEecch-hhhhhc
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL----EGRRYLVVVDDIW--HKSAWESLRRAFPDNGNGSRIVITTRNE-PVAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L----~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~ 313 (718)
..+....+.......++..+...+.. .+|.=+.|+|.|. +...|+.+...+..-...-+.|..|++. .+..-.
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 00000011122223333333333222 3455588899997 4567888887776444455555555544 443322
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
-.....|.++.++.++-...+...+-.
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHh
Confidence 222367899999999877777766543
No 384
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.20 E-value=0.011 Score=51.54 Aligned_cols=27 Identities=37% Similarity=0.601 Sum_probs=19.1
Q ss_pred EEEEecCCchHHHHHHHHhcCccccCCCc
Q 047642 187 ISILGMGGLGKTTLARKLVNSTDVKGGFD 215 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 215 (718)
|.|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 5666774
No 385
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.20 E-value=0.11 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999998875
No 386
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.12 Score=56.53 Aligned_cols=24 Identities=42% Similarity=0.491 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|.+|+||||++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999888763
No 387
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.19 E-value=0.042 Score=59.96 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEE-EecCCCCHHHHHHHHHHHhcC----Ccccc
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV-CVTQEYTTRDLLQKTIKSFQK----PKIED 246 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~l~~i~~~l~~----~~~~~ 246 (718)
+++++|..-. .-.-.+|+|.+|+|||||++.+.+... ..+-++.++| -|.+..... .++...+.. ....
T Consensus 405 RvIDll~PIG-kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D- 478 (672)
T PRK12678 405 RVIDLIMPIG-KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFD- 478 (672)
T ss_pred eeeeeecccc-cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCC-
Confidence 3445444322 234678999999999999999998421 2233444444 455544322 222222211 0000
Q ss_pred hHHhhhcCHHHHHHHHHHHh--cCceEEEEEecCCC
Q 047642 247 LELMERMTEEDLELHLYEFL--EGRRYLVVVDDIWH 280 (718)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~L--~~k~~LlVLDdv~~ 280 (718)
.+.........+.-.+-+++ .++.+||++|++..
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 01111111222333344444 68999999999854
No 388
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.19 E-value=0.058 Score=58.41 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=55.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC-HHHHHHHHHHHhcCCc------ccchHHhhhcCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKPK------IEDLELMERMTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~~------~~~~~~~~~~~~~~ 257 (718)
+-++|.|.+|+|||||+.++.+... +.+-+.++++-+.+... ..+++.++...-.... ..+.+.........
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 4789999999999999998888532 23567788887776654 3444444443211100 00001111111122
Q ss_pred HHHHHHHHh---cCceEEEEEecCCC
Q 047642 258 LELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
..-.+-+++ +++++|+++||+-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchH
Confidence 233344555 37999999999943
No 389
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.18 E-value=0.14 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 390
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.17 E-value=0.11 Score=48.35 Aligned_cols=122 Identities=17% Similarity=0.135 Sum_probs=64.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceE-E-EEEecCCCCHHHHHHHHHHHhcC---Ccc-c--c-hHHhhhcCH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCR-A-WVCVTQEYTTRDLLQKTIKSFQK---PKI-E--D-LELMERMTE 255 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~-~-wv~vs~~~~~~~~l~~i~~~l~~---~~~-~--~-~~~~~~~~~ 255 (718)
..|-|++..|.||||.|..+.-.. ....+... + |+.-.........+... .+.. ... . . .+.......
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999998777631 22223221 1 33333233333444332 1110 000 0 0 000000112
Q ss_pred HHHHHHHHHHhcCceE-EEEEecCCCh-----hhhhHHHhhCCCCCCCcEEEEEecchhh
Q 047642 256 EDLELHLYEFLEGRRY-LVVVDDIWHK-----SAWESLRRAFPDNGNGSRIVITTRNEPV 309 (718)
Q Consensus 256 ~~l~~~l~~~L~~k~~-LlVLDdv~~~-----~~~~~l~~~l~~~~~gsriivTTR~~~v 309 (718)
.+.....++.+...+| |||||.+-.. -..+++...+.....+.-||+|-|+..-
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 2334445555655555 9999998633 2334566666656677899999998743
No 391
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.15 E-value=0.2 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 392
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.14 E-value=0.13 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999874
No 393
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.19 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999874
No 394
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.13 E-value=0.024 Score=50.28 Aligned_cols=38 Identities=29% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++.+.|...=..-.+|.+.|.-|.||||+++.+...
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444332122358999999999999999999985
No 395
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.12 E-value=0.02 Score=55.89 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++.|+|+.|.|||||.+.+.-
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999874
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.10 E-value=0.083 Score=56.73 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=51.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHHHHHhcCCc------ccchHHhhhc---
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKTIKSFQKPK------IEDLELMERM--- 253 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i~~~l~~~~------~~~~~~~~~~--- 253 (718)
-..++|+|..|+|||||++++++... -+..+++-+.+.... .++..+.+..-+... ..+.+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35889999999999999999998422 245566667666543 344444433221100 0000111111
Q ss_pred -CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 254 -TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 254 -~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..-..++.++. +++.+|+++||+-.
T Consensus 234 ~~a~tiAEyfrd--~G~~Vll~~DslTr 259 (442)
T PRK08927 234 YLTLAIAEYFRD--QGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHH--CCCcEEEEEeCcHH
Confidence 11123334443 58999999999954
No 397
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.15 Score=50.64 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999985
No 398
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.09 E-value=0.099 Score=50.15 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=27.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCC--------ceEEEEEecCC
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGF--------DCRAWVCVTQE 225 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~ 225 (718)
.++.|+|++|+||||++..+.........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 388999999999999999888754332222 24667765555
No 399
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.07 E-value=0.12 Score=58.45 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-..++|+|+.|.|||||++.+..
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 400
>PRK00625 shikimate kinase; Provisional
Probab=95.06 E-value=0.015 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 401
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.05 E-value=0.017 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999986
No 402
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.05 E-value=0.076 Score=56.83 Aligned_cols=90 Identities=14% Similarity=0.236 Sum_probs=52.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHHHHHhcCCc------ccchHHhhhc----
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKTIKSFQKPK------IEDLELMERM---- 253 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i~~~l~~~~------~~~~~~~~~~---- 253 (718)
..++|+|..|+|||||++.+.+.. ..+.++.+-+.+.... .++...++..-.... ..+.+.....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 579999999999999999998731 2256666777776543 344444433311100 0000111111
Q ss_pred CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 254 TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 254 ~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..-..++.++. +++++|+++||+-.
T Consensus 239 ~A~tiAEyfrd--~G~~VLl~~DslTR 263 (444)
T PRK08972 239 TATTIAEYFRD--QGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHH--cCCCEEEEEcChHH
Confidence 11123344443 58999999999964
No 403
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.05 E-value=0.16 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+...
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999999873
No 404
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.43 Score=49.94 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=82.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ce-----EEEEEecCCCCHHHHHHHHHHHhc
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DC-----RAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~-----~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
..+++...+..+. -...+.++|+.|+||+|+|..+..-.--...- .| +-++.....+|...+.
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 3455666665542 45688899999999999998876631111100 00 0111111111111000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~ 312 (718)
.... ......+++.+ +.+.+ .+++=++|+|+++.. ..-+.+...+..-..++..|.+|.+. .+..-
T Consensus 81 p~~~-----~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 81 PEKG-----KSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred cccc-----cccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 0000 01122333332 22222 356668999999854 45667777776555567666666654 34433
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhh
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
.......+.+.+++.++..+.+...
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHc
Confidence 2222356889999999988877643
No 405
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.03 E-value=0.26 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+..-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999883
No 406
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.02 E-value=0.29 Score=47.17 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 047642 186 VISILGMGGLGKTTLARKLV 205 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~ 205 (718)
+++|+|..|.|||||++.++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 407
>PRK13975 thymidylate kinase; Provisional
Probab=95.02 E-value=0.079 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999984
No 408
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.061 Score=61.32 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=82.9
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc-----eEEEEEecCCCCHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD-----CRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-----~~~wv~vs~~~~~~~~l~~i 235 (718)
..++||+++++++++.|.....+-. .++|.+|+|||++|.-++.. -+.+.-+ ..++. + ++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~r-Iv~g~VP~~L~~~~i~s-L-----------D~ 234 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQR-IVNGDVPESLKDKRIYS-L-----------DL 234 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHH-HhcCCCCHHHcCCEEEE-e-----------cH
Confidence 3489999999999999987643222 36899999999988666652 1112211 11110 0 01
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh-----------hhhhHHHhhCCCCCCCcEEEEE
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK-----------SAWESLRRAFPDNGNGSRIVIT 303 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~l~~~l~~~~~gsriivT 303 (718)
..-+.+... .-+.++....+.+.+ +.++..|.+|.+... +.-+-++++|..+ .--.|=.|
T Consensus 235 g~LvAGaky-------RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGAT 306 (786)
T COG0542 235 GSLVAGAKY-------RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGAT 306 (786)
T ss_pred HHHhccccc-------cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEec
Confidence 111111110 112334444444444 345899999998642 1222344444422 22345556
Q ss_pred ecchhhhhhcC------CCCceeeccCCCHHhHHHHHHhh
Q 047642 304 TRNEPVAMITD------EKNFVYKLRFLNQEESWKLFCKK 337 (718)
Q Consensus 304 TR~~~v~~~~~------~~~~~~~l~~L~~~es~~Lf~~~ 337 (718)
|-++.- +... -....+.+..-+.+++...++..
T Consensus 307 T~~EYR-k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 307 TLDEYR-KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred cHHHHH-HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 654431 1111 11257888889999999888753
No 409
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.01 E-value=0.075 Score=56.35 Aligned_cols=52 Identities=23% Similarity=0.121 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
.++-+.|-.+=..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 3343444333223469999999999999999999874 222234577776543
No 410
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.99 E-value=0.048 Score=58.59 Aligned_cols=46 Identities=35% Similarity=0.460 Sum_probs=34.6
Q ss_pred CceeeccccHHHHHHHHhcC--------------CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKD--------------EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~--------------~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+||.+..++.+...+... .....-|.++|++|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35899999888876554211 00235689999999999999999987
No 411
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.97 E-value=0.18 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||++.+..-
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999884
No 412
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.96 E-value=0.12 Score=53.38 Aligned_cols=90 Identities=17% Similarity=0.285 Sum_probs=48.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC-CCHHHHHHHHHHHhcCCc------ccchHHhhhcCH--
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE-YTTRDLLQKTIKSFQKPK------IEDLELMERMTE-- 255 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~i~~~l~~~~------~~~~~~~~~~~~-- 255 (718)
..++|+|..|.|||||.+.+.+... -+..+..-+... -+..++.......-.... ..+.+.......
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999998422 123344444433 234444444433221100 000011111111
Q ss_pred --HHHHHHHHHHhcCceEEEEEecCCC
Q 047642 256 --EDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 256 --~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
-..++.+++ ++|.+||++||+-.
T Consensus 146 ~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHH--cCCCeEEEeccchH
Confidence 123344443 58999999999854
No 413
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.96 E-value=0.015 Score=56.29 Aligned_cols=21 Identities=43% Similarity=0.726 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+|+|.|.+|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.95 E-value=0.031 Score=54.08 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=60.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccc--hHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIED--LELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~--~~~~~~~~~~~l~~~ 261 (718)
..+++|.|+.|.||||+.+.+.--. +-.+ ...+|... +..-.+...|...+....... ...+. ....++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs-~e~~~~~~- 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFA-SEMSETAY- 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchh--hcCccChhheeEecCCccccchhhhHHH-HHHHHHHH-
Confidence 3689999999999999999886421 1101 11111111 001122233333333221100 00000 01111211
Q ss_pred HHHHhcCceEEEEEecCCC---hhh----hhHHHhhCCCCCCCcEEEEEecchhhhhhcCC
Q 047642 262 LYEFLEGRRYLVVVDDIWH---KSA----WESLRRAFPDNGNGSRIVITTRNEPVAMITDE 315 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~---~~~----~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~ 315 (718)
+.. +..++-|+++|.... ..+ ...+...+. ..|+.+|++|.+.+++..+..
T Consensus 102 il~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 102 ILD-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 111 245678999999843 222 122333333 237899999999998877653
No 415
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.95 E-value=0.15 Score=50.89 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=34.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHH
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 234 (718)
+.-.++.|.|.+|+|||++|.++.... . ..-...+||+... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 345799999999999999998865531 2 2345688888665 44444444
No 416
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.94 E-value=0.04 Score=58.35 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=48.6
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ceEEEEEe-cC
Q 047642 161 EQVVGFEENTKMLIKQLLKD------------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DCRAWVCV-TQ 224 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~v-s~ 224 (718)
..++|.++.++.+..++... +-....|.++|++|+||||||+.+... ....| +..-|... ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45889998888888777541 112467899999999999999999884 33333 32222221 11
Q ss_pred CCCHHHHHHHHHHHh
Q 047642 225 EYTTRDLLQKTIKSF 239 (718)
Q Consensus 225 ~~~~~~~l~~i~~~l 239 (718)
..+....++.+....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 224555555555444
No 417
>PRK08149 ATP synthase SpaL; Validated
Probab=94.93 E-value=0.12 Score=55.55 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=50.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC-CHHHHHHHHHHHhcCCc------ccchHHhhhcCH-
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY-TTRDLLQKTIKSFQKPK------IEDLELMERMTE- 255 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~i~~~l~~~~------~~~~~~~~~~~~- 255 (718)
-..++|+|..|+|||||++.+++... -+..+...+.... +..++..+......... ..+.+.......
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 34889999999999999999998422 2333344444433 34445555544322110 000011111111
Q ss_pred ---HHHHHHHHHHhcCceEEEEEecCCC
Q 047642 256 ---EDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 256 ---~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
-..++.++. ++|++||++||+-.
T Consensus 227 ~~a~tiAE~fr~--~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRD--QGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHH--cCCCEEEEccchHH
Confidence 123333443 58999999999964
No 418
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.91 E-value=0.37 Score=47.53 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=116.8
Q ss_pred eeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc----ccCCCceEEEEEecCC----------C--
Q 047642 163 VVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD----VKGGFDCRAWVCVTQE----------Y-- 226 (718)
Q Consensus 163 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~vs~~----------~-- 226 (718)
+.++++...++...... +...-..++|+.|.||-|.+..+.++.- .+-.-+.+.|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred cccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 56677777777665552 3467888999999999998877766411 1112234455533322 1
Q ss_pred ---------CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceE-EEEEecCCCh--hhhhHHHhhCCCC
Q 047642 227 ---------TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRY-LVVVDDIWHK--SAWESLRRAFPDN 294 (718)
Q Consensus 227 ---------~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~ 294 (718)
..+-+.++++++....... + .-..+.| ++|+-.++.. +.-..++.....-
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qi-----e-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQI-----E-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcch-----h-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1233444555544332210 0 0123344 5666666532 3334454444433
Q ss_pred CCCcEEEEEecch-hhhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc-------
Q 047642 295 GNGSRIVITTRNE-PVAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR------- 366 (718)
Q Consensus 295 ~~gsriivTTR~~-~v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~------- 366 (718)
.+.+|+|+...+. .+..-.......+++...+++|-...+++-.-..+.. .| ++++++|+++++
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-----lp---~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-----LP---KELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-----Cc---HHHHHHHHHHhcccHHHHH
Confidence 4567777643322 1222222222568889999999998888776544331 22 678899999887
Q ss_pred --------------cC----ChhHHHHHHHHhhcccc--CCCCchHhHHHhcccCC
Q 047642 367 --------------EE----IPHEWHTVKNHLWWHLT--QDSDHVSPILALSYDEL 402 (718)
Q Consensus 367 --------------~~----~~~~w~~~~~~~~~~~~--~~~~~i~~~l~~sy~~L 402 (718)
.. ...+|+-.......... +....+..+-..-|+-|
T Consensus 227 lmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 227 LMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 15678888777654332 23344555555555544
No 419
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.91 E-value=0.02 Score=58.07 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++.+...+ +-|.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhcc
Confidence 45666666543 46789999999999999998863
No 420
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.89 E-value=0.016 Score=54.98 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 421
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.15 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-..++|+|..|+|||||++.+...
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999874
No 422
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.22 Score=49.29 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999874
No 423
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.32 Score=46.78 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCC-CCCCcEEEEEecchhhhhhcCCC
Q 047642 261 HLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPD-NGNGSRIVITTRNEPVAMITDEK 316 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~-~~~gsriivTTR~~~v~~~~~~~ 316 (718)
.+.+.+.-++-+.|||..++- +.++.+...+.. ...|+-++|.|..+.++.....+
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 344555567789999999864 334433333331 24577788899999999887654
No 424
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.85 E-value=0.023 Score=55.27 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=25.2
Q ss_pred HhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 177 LLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 177 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+.++....+.|.|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344446789999999999999999999763
No 425
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.84 E-value=0.038 Score=54.23 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=31.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD 209 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 209 (718)
...++++.+.....+..+|+|.|+||.||+||.-++....+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 45677777776666788999999999999999998888533
No 426
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.84 E-value=0.027 Score=51.37 Aligned_cols=35 Identities=37% Similarity=0.351 Sum_probs=25.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEE
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWV 220 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 220 (718)
..||-|.|.+|+||||||+++... ....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEe
Confidence 468999999999999999999984 44433444444
No 427
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.84 E-value=0.076 Score=53.69 Aligned_cols=91 Identities=15% Similarity=0.219 Sum_probs=48.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH--hhhcCHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL--MERMTEEDLEL 260 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~--~~~~~~~~l~~ 260 (718)
+..+|.|+|.+|.|||||...+.+. ...... .+.+ .....+..+ .+.+...+.+.. +... ..-.+...+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvv-qi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAI-QVNTGKGCHLDAQMIAD 175 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEE-EecCCCCCcCcHHHHHH
Confidence 5789999999999999999999983 444432 2222 111122222 112333322110 0000 11223344445
Q ss_pred HHHHHhcCceEEEEEecCCC
Q 047642 261 HLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 261 ~l~~~L~~k~~LlVLDdv~~ 280 (718)
.+...-....-++|+++|-+
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444456788899864
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.81 E-value=0.021 Score=53.84 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999983
No 429
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.80 E-value=1.6 Score=42.87 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=86.8
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEec-CCCCHHHHHHHHHHHhcCCcccch
Q 047642 170 TKMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVT-QEYTTRDLLQKTIKSFQKPKIEDL 247 (718)
Q Consensus 170 ~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~l~~i~~~l~~~~~~~~ 247 (718)
.++.+..+... ..+..++.++|.-|.|||.+++++... ..+ +.++=|.+. +......+...|+..+.......
T Consensus 36 h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~- 110 (269)
T COG3267 36 HNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVN- 110 (269)
T ss_pred hhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccch-
Confidence 34444444332 334569999999999999999955542 111 112223333 34567778888888887632210
Q ss_pred HHhhhcCHHHHHHHHHHHh-cCce-EEEEEecCCCh--hhhhHHHhhCCCCCCCc---EEEEEecch-------hhhhhc
Q 047642 248 ELMERMTEEDLELHLYEFL-EGRR-YLVVVDDIWHK--SAWESLRRAFPDNGNGS---RIVITTRNE-------PVAMIT 313 (718)
Q Consensus 248 ~~~~~~~~~~l~~~l~~~L-~~k~-~LlVLDdv~~~--~~~~~l~~~l~~~~~gs---riivTTR~~-------~v~~~~ 313 (718)
. ....++..+.+.... ++++ ..+++||..+. +..+.++-.......+| +|+..-.-+ .+....
T Consensus 111 --~-~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~ 187 (269)
T COG3267 111 --V-NAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL 187 (269)
T ss_pred --h-HHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh
Confidence 0 111233333444444 4566 89999998753 44555543333111122 122211110 011111
Q ss_pred CCCCce-eeccCCCHHhHHHHHHhhhCCC
Q 047642 314 DEKNFV-YKLRFLNQEESWKLFCKKAFPD 341 (718)
Q Consensus 314 ~~~~~~-~~l~~L~~~es~~Lf~~~af~~ 341 (718)
.....+ |++.|++.++...++..+.-+.
T Consensus 188 ~~R~~ir~~l~P~~~~~t~~yl~~~Le~a 216 (269)
T COG3267 188 EQRIDIRIELPPLTEAETGLYLRHRLEGA 216 (269)
T ss_pred hheEEEEEecCCcChHHHHHHHHHHHhcc
Confidence 111134 8999999998887777665443
No 430
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.80 E-value=0.051 Score=53.10 Aligned_cols=178 Identities=17% Similarity=0.023 Sum_probs=103.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccc--ccccccchh---------hhhcccccEEeeccC
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHS--GKVLRLTDS---------IGKLIHLRYFGFKCN 598 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~l~~~p~~---------i~~l~~L~~L~l~~~ 598 (718)
||+|....+++|.+.......+.+.+++-+.|..|.+++|.+... .. +-.. ..+-+.|+......|
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r---igkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGR---IGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhH---HHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 788888888888776544445556678888888888888876410 01 1111 123456777777778
Q ss_pred Ccccccccc-----cccCCCcEEEecCccccc-----c-Chhhccccccceeee-c--------ccCcccCCCccccccc
Q 047642 599 SLVEFPRSI-----GNLQCLKTMVASGNSCWK-----L-PSQISKLHQLRHLIA-R--------PLGHLQVSTLTNLQTL 658 (718)
Q Consensus 599 ~l~~lp~~i-----~~l~~L~~L~l~~~~i~~-----l-p~~i~~L~~L~~L~l-~--------~~~p~~~~~l~~L~~L 658 (718)
++...|... ..-.+|+++.+..|.|.. + --+...+++|..|++ . ..+-..++....|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 877666432 122478888887776651 1 123456678888887 1 1122234556667777
Q ss_pred cceecc------ccchHHhc--ccCCCCeEEEeec---ccc-----HHHHh-hccCCCCeEEEeeCCCC
Q 047642 659 KYVNFQ------QWDAVDAR--NLINLQELEIREI---PYT-----NMNFI-LQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 659 ~~~~~~------~~~~~~l~--~l~~L~~L~l~~~---~~~-----~~~~l-~~l~~L~~L~l~~~~~~ 710 (718)
.+.+|- ......|. ..++|..|...+| .+. .+... .+++-|..|.+.+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 777664 12223333 3467777777777 111 22222 24566666666666543
No 431
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.80 E-value=0.19 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 432
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.79 E-value=0.17 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+..|+|+||+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999988763
No 433
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.02 Score=54.13 Aligned_cols=24 Identities=50% Similarity=0.646 Sum_probs=22.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|-||=|+||||||+++.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999995
No 434
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.78 E-value=0.0019 Score=61.28 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=55.9
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
+..++..++||++.|++- . +-..++-++.|..|+++.|.+..+|+..+.+..+..+++..|+.+.+|.+++.++
T Consensus 38 i~~~kr~tvld~~s~r~v---n---~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV---N---LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred hhccceeeeehhhhhHHH---h---hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 345566677777777665 4 5556666777777777777777777777777777777776667777777777777
Q ss_pred ccceeee
Q 047642 635 QLRHLIA 641 (718)
Q Consensus 635 ~L~~L~l 641 (718)
.+++++.
T Consensus 112 ~~k~~e~ 118 (326)
T KOG0473|consen 112 HPKKNEQ 118 (326)
T ss_pred Ccchhhh
Confidence 7777665
No 435
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.77 E-value=0.24 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+.--
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999874
No 436
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=94.77 E-value=0.21 Score=58.40 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..++|+|..|.|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 437
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.77 E-value=0.021 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999874
No 438
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.76 E-value=0.1 Score=58.37 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=36.8
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|....++++++.+..-...-.-|.|+|..|+||+++|+.+.+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 46999999888888777543222345789999999999999998763
No 439
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.75 E-value=0.076 Score=56.91 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+.+|.++|.+|+||||+|..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998876
No 440
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.75 E-value=0.035 Score=61.09 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=27.4
Q ss_pred HHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 174 IKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 174 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++.+.....++.+|+|.|..|.||||||+.+...
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 3444445556889999999999999999999873
No 441
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.75 E-value=0.09 Score=56.73 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=53.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC-HHHHHHHHHHHhcCCc------ccchHHhhhcCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKPK------IEDLELMERMTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~~------~~~~~~~~~~~~~~ 257 (718)
+-++|.|.+|+|||||+.++........ =+.++++-+.+... ..+++.++...-.... ..+.+.........
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4789999999999999998876422211 14577777776654 3455555544211100 00001111111112
Q ss_pred HHHHHHHHh---cCceEEEEEecCCC
Q 047642 258 LELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
..-.+-+++ +++++||++||+-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 222344454 67999999999854
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.74 E-value=0.018 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 443
>PRK01184 hypothetical protein; Provisional
Probab=94.74 E-value=0.38 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|++|+||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 444
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.73 E-value=0.23 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 445
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.37 Score=47.70 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=37.6
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++-|.+..+++|.+...-+ -..++-|.++|.+|.|||-||++|+|.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 45678999999998876432 023567889999999999999999994
No 446
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.73 E-value=0.073 Score=57.28 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=55.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHHHHHhcCCc------ccchHHhhhcCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKTIKSFQKPK------IEDLELMERMTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i~~~l~~~~------~~~~~~~~~~~~~~ 257 (718)
+-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+.+.... .+++.++...-.... ..+.+.........
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999999887532 233477889888777643 444444443211000 00001111111122
Q ss_pred HHHHHHHHh---cCceEEEEEecCCC
Q 047642 258 LELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
..-.+-+++ +++++|+++||+..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 223344555 46899999999964
No 447
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.036 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.-|.|.|-+|+||||+|..+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 3578999999999999999986
No 448
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.71 E-value=0.12 Score=51.43 Aligned_cols=113 Identities=16% Similarity=0.275 Sum_probs=66.1
Q ss_pred ceeeccccHHHHHHHHhc----C-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 162 QVVGFEENTKMLIKQLLK----D-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
.++|-.-.++.|+..+.. + ...+-|++.+|.+|+||.-.|+.++++..-.+-= .......+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 366766666666666543 2 3467899999999999999999999853211110 00111112
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcC-ceEEEEEecCCCh--hhhhHHHhhCC
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEG-RRYLVVVDDIWHK--SAWESLRRAFP 292 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-k~~LlVLDdv~~~--~~~~~l~~~l~ 292 (718)
....-+.... ++. =.+++..+++..++. ++.|+|+|+++.. .-.+.|...+.
T Consensus 149 at~hFP~~~~---ie~-Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 149 ATLHFPHASK---IED-YKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhccCCChHH---HHH-HHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 2222121110 110 124566666666644 8999999999864 45666766665
No 449
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.69 E-value=0.13 Score=51.98 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=64.3
Q ss_pred eeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCc
Q 047642 164 VGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPK 243 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~ 243 (718)
.|...+..+.+..+.... ..+|.|.|..|.||||++..+.+. +...-..++.+.-..++.... +.++..
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v-- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQV-- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEe--
Confidence 455544444444444332 348999999999999999988763 322111222332222221111 001100
Q ss_pred ccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecc
Q 047642 244 IEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRN 306 (718)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~ 306 (718)
...........++..|+...=.|+++++-+.+....+..+.. .|-.++-|..-
T Consensus 131 -------~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa 183 (264)
T cd01129 131 -------NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHT 183 (264)
T ss_pred -------CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEecc
Confidence 000011345567777888888999999998876444433332 24334444443
No 450
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.34 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|+|||||.+.+...
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 451
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.32 Score=51.02 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=51.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
..++++|+|+.|+||||++..+... ...+-..+.+|+... .....+-++...+.++.+.. ...+..++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~------~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI------VATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE------ecCCHHHHHHH
Confidence 3579999999999999999998874 222223455665432 22234445555554443221 12345555544
Q ss_pred HHHHhc-CceEEEEEecCCC
Q 047642 262 LYEFLE-GRRYLVVVDDIWH 280 (718)
Q Consensus 262 l~~~L~-~k~~LlVLDdv~~ 280 (718)
+...-. +..=+|++|-.-.
T Consensus 277 l~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHHHHhcCCCCEEEEECCCC
Confidence 443221 3446788887753
No 452
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.67 E-value=0.041 Score=55.99 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+.+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987755
No 453
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.65 E-value=0.018 Score=49.42 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=18.7
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 047642 187 ISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~ 207 (718)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998874
No 454
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=94.61 E-value=0.2 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.60 E-value=0.021 Score=54.05 Aligned_cols=22 Identities=55% Similarity=0.771 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 456
>PRK13947 shikimate kinase; Provisional
Probab=94.60 E-value=0.022 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 457
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.60 E-value=0.13 Score=54.97 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999886
No 458
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.59 E-value=0.33 Score=54.41 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.++.-
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 459
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.58 E-value=0.056 Score=54.59 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=18.5
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999884
No 460
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.57 E-value=0.017 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|..|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 461
>PRK04328 hypothetical protein; Provisional
Probab=94.57 E-value=0.12 Score=51.76 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=30.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE 225 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 225 (718)
.-.++.|.|.+|+|||+||.++.... . ..-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 45699999999999999999876531 2 22355788887664
No 462
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.56 E-value=0.03 Score=52.90 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999984
No 463
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.36 Score=53.65 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=38.3
Q ss_pred CCCCceeeccccHHHH---HHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcCcc
Q 047642 158 AGNEQVVGFEENTKML---IKQLLKDE-------QQRFVISILGMGGLGKTTLARKLVNSTD 209 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 209 (718)
....++-|.++.++++ ++.|.++. .-++-|..+|++|.|||.||+++.....
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 4445678988876655 55555442 2356789999999999999999999533
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.55 E-value=0.073 Score=56.16 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=63.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...|.|.|+.|.||||+.+.+.+. +..+...+++.- .+.. +-........+.... .. .........++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~ti-Edp~--E~~~~~~~~~i~q~e------vg-~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITI-EDPI--EYVHRNKRSLINQRE------VG-LDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEE-cCCh--hhhccCccceEEccc------cC-CCCcCHHHHHH
Confidence 358999999999999999998873 444444555532 2211 100000000000000 00 11123455677
Q ss_pred HHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhh
Q 047642 264 EFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVA 310 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~ 310 (718)
..|+..+=.|++|.+-+.+.+....... ..|-.|+.|+-...+.
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 7888899999999998887766543332 2355566666544443
No 465
>PRK06217 hypothetical protein; Validated
Probab=94.54 E-value=0.024 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|.|.|++|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 466
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.54 E-value=0.035 Score=52.84 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=28.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEE
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVC 221 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 221 (718)
.++|.|+|+.|+|||||++.+.. ....+|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 46899999999999999999998 4556675444443
No 467
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.53 E-value=0.027 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++|+|+|+.|+||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999983
No 468
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.52 E-value=0.17 Score=52.79 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhcC
Q 047642 187 ISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 187 i~I~G~gGiGKTtLA~~v~~~ 207 (718)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999874
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.52 E-value=0.25 Score=48.90 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=29.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE 225 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 225 (718)
.-.++.|.|.+|+||||||..+.... .+ .-...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 35699999999999999999876531 22 2346788876443
No 470
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.51 E-value=0.17 Score=51.03 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=29.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
.-.++.|.|.+|+||||+|.++.... .+ .-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-AS-RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh-CCCcEEEEEecC
Confidence 35699999999999999999976532 12 234577888764
No 471
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.51 E-value=0.024 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999884
No 472
>PRK13409 putative ATPase RIL; Provisional
Probab=94.50 E-value=0.21 Score=56.68 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|+|||||++.++..
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl 388 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGV 388 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 49999999999999999999974
No 473
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.50 E-value=0.025 Score=30.42 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=6.6
Q ss_pred CCcEEEecCccccccC
Q 047642 612 CLKTMVASGNSCWKLP 627 (718)
Q Consensus 612 ~L~~L~l~~~~i~~lp 627 (718)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 474
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=94.49 E-value=0.32 Score=51.63 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||++.+..-
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 475
>PRK05922 type III secretion system ATPase; Validated
Probab=94.48 E-value=0.17 Score=54.34 Aligned_cols=92 Identities=12% Similarity=0.249 Sum_probs=48.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC-CHHHHHHHHHHHhcCCccc------chHHhhhcCHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY-TTRDLLQKTIKSFQKPKIE------DLELMERMTEED 257 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~i~~~l~~~~~~------~~~~~~~~~~~~ 257 (718)
..++|+|..|+|||||.+.+.+.. +-+..+.+.+.... ...+.+.+........... +.+.........
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999999742 22333444343432 2334444433322211100 000011111111
Q ss_pred HHHHHHHHh--cCceEEEEEecCCC
Q 047642 258 LELHLYEFL--EGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L--~~k~~LlVLDdv~~ 280 (718)
..-.+-+++ +++++|+++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233333 58999999999964
No 476
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.3 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|.|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 477
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.45 E-value=0.14 Score=54.94 Aligned_cols=91 Identities=20% Similarity=0.347 Sum_probs=50.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC-HHHHHHHHHHHhcCCc------ccchHHhhhcC--
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKPK------IEDLELMERMT-- 254 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~~------~~~~~~~~~~~-- 254 (718)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+... ..+.+.+....-.... ..+.+......
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 3488999999999999999998742 344456666655433 3344444322100000 00001111111
Q ss_pred --HHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 255 --EEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 255 --~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
.-..++.++. +++++||++||+..
T Consensus 231 ~~a~tiAEyfrd--~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRD--NGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHH--CCCcEEEEEeCHHH
Confidence 1123344443 58999999999964
No 478
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.45 E-value=0.072 Score=52.66 Aligned_cols=93 Identities=27% Similarity=0.266 Sum_probs=51.5
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCccc----------c-hHHhh
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIE----------D-LELME 251 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~----------~-~~~~~ 251 (718)
.-.++.|.|.+|+|||+||.++.... .+..=..++||+..+. ..++.+. +..++..... + .+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~--~~~l~~~-~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP--PEELIEN-MKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS---HHHHHHH-HHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC--HHHHHHH-HHHcCCcHHHHhhcCCEEEEecccccc
Confidence 34699999999999999999866531 2221235778876554 3443333 2233321100 0 00000
Q ss_pred ---hcCHHHHHHHHHHHhcC-ceEEEEEecCC
Q 047642 252 ---RMTEEDLELHLYEFLEG-RRYLVVVDDIW 279 (718)
Q Consensus 252 ---~~~~~~l~~~l~~~L~~-k~~LlVLDdv~ 279 (718)
..+.+.+...+.+.++. +...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24566677777766654 44688888863
No 479
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.44 E-value=0.027 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999874
No 480
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.43 E-value=0.12 Score=55.56 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=56.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccC--CCc---------eEEEEEecCCCCHHHHHHHHHHHhcC-Ccc------cc
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKG--GFD---------CRAWVCVTQEYTTRDLLQKTIKSFQK-PKI------ED 246 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~l~~i~~~l~~-~~~------~~ 246 (718)
+-++|.|-+|+|||||+.++.++..... -.| .++++.+.+.....+.+.+.+..-+. ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4789999999999999999998643100 012 56777888886666666666655441 100 00
Q ss_pred hHHhhhcCHHHHHHHHHHHhc---CceEEEEEecCCC
Q 047642 247 LELMERMTEEDLELHLYEFLE---GRRYLVVVDDIWH 280 (718)
Q Consensus 247 ~~~~~~~~~~~l~~~l~~~L~---~k~~LlVLDdv~~ 280 (718)
.+........-..-.+-++++ ++++|+++||+-.
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111111222223445554 6899999999954
No 481
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.40 E-value=0.034 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
....+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999988
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.40 E-value=0.033 Score=50.25 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=26.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
.+|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999942 224444444555544
No 483
>PHA02774 E1; Provisional
Probab=94.39 E-value=0.12 Score=56.76 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=28.8
Q ss_pred cCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 179 KDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 179 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
.+.+....+.|+|++|+|||.+|-.+.+- .. -....||+.
T Consensus 429 ~~~PKknciv~~GPP~TGKS~fa~sL~~~--L~--G~vi~fvN~ 468 (613)
T PHA02774 429 KGIPKKNCLVIYGPPDTGKSMFCMSLIKF--LK--GKVISFVNS 468 (613)
T ss_pred hcCCcccEEEEECCCCCCHHHHHHHHHHH--hC--CCEEEEEEC
Confidence 33344568999999999999999999983 22 223556664
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.39 E-value=0.036 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3569999999999999999999974
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.39 E-value=0.11 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|+|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 48999999999999999999874
No 486
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.03 Score=51.17 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 047642 186 VISILGMGGLGKTTLARKLV 205 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~ 205 (718)
.|+|.|.||+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 487
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.031 Score=54.02 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|..|+|||||++.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999999876
No 488
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.38 E-value=0.039 Score=54.94 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHH
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 234 (718)
-.+++..+.....+..+|+|.|.||+||+||.-.+.....-+++--.++=|.=|..++--.++.+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 35677777776677889999999999999999988885433444333334444445544444443
No 489
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.36 E-value=0.026 Score=51.45 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999973
No 490
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.026 Score=50.84 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=32.4
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCC
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKP 242 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~ 242 (718)
+|.|-|++|+||||+|+.+.++.-.. | .+.-.++++|++..+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999852211 1 13345778888877653
No 491
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.34 E-value=0.14 Score=52.75 Aligned_cols=91 Identities=19% Similarity=0.112 Sum_probs=52.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
.-+++-|+|..|+||||||..+... .+..-..++|+.....+++.- ++.++.....- --......++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rl-lv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRL-LVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGE-EEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccce-EEecCCcHHHHHHHH
Confidence 3469999999999999999998873 444445688999888877643 34444321110 001122334444555
Q ss_pred HHHhcC-ceEEEEEecCCCh
Q 047642 263 YEFLEG-RRYLVVVDDIWHK 281 (718)
Q Consensus 263 ~~~L~~-k~~LlVLDdv~~~ 281 (718)
.+.++. .--++|+|-|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 555543 4458999998654
No 492
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.32 E-value=0.22 Score=50.37 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||++.+..-
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999984
No 493
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.31 E-value=0.26 Score=46.55 Aligned_cols=124 Identities=18% Similarity=0.128 Sum_probs=65.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEE---EEEecCCCCHHHHHHHH--HHHhc-CCccc---chHHhhhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRA---WVCVTQEYTTRDLLQKT--IKSFQ-KPKIE---DLELMERMT 254 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~l~~i--~~~l~-~~~~~---~~~~~~~~~ 254 (718)
...|-|+|..|-||||.|..+.-. .-++--.+. |+.-.........+..+ +.... +.... ..+......
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 458999999999999999877763 222222222 22222223333333331 00000 00000 000001111
Q ss_pred HHHHHHHHHHHhcCceE-EEEEecCCCh-----hhhhHHHhhCCCCCCCcEEEEEecchhh
Q 047642 255 EEDLELHLYEFLEGRRY-LVVVDDIWHK-----SAWESLRRAFPDNGNGSRIVITTRNEPV 309 (718)
Q Consensus 255 ~~~l~~~l~~~L~~k~~-LlVLDdv~~~-----~~~~~l~~~l~~~~~gsriivTTR~~~v 309 (718)
..+.....++.+...+| |||||.+-.. -..+++...+.....+.-||+|=|+..-
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 22333445556655444 9999998643 2355666666666677899999998754
No 494
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.29 E-value=0.13 Score=59.37 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=37.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|....++++.+.+..-.....-|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45899999998888877654323345789999999999999999984
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.2 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|++++|+.|+||||.+.++...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 469999999999999999988874
No 496
>PRK13949 shikimate kinase; Provisional
Probab=94.28 E-value=0.03 Score=52.45 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-|.|+|++|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 497
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.05 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++.|.|++|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 358899999999999999999995
No 498
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.26 E-value=0.18 Score=50.60 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCccccCCCceE-EEEEecCCCC-HHHHHHHHHHHhcCCc------ccchHHhhhc--
Q 047642 185 FVISILGMGGLGKTTLA-RKLVNSTDVKGGFDCR-AWVCVTQEYT-TRDLLQKTIKSFQKPK------IEDLELMERM-- 253 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~l~~i~~~l~~~~------~~~~~~~~~~-- 253 (718)
+-++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+.+... ..++..++...-.... ..+.+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 47899999999999996 667663 1 23444 5666666644 3444444443211000 0000000100
Q ss_pred --CHHHHHHHHHHHhcCceEEEEEecCCCh-hhhhHHH
Q 047642 254 --TEEDLELHLYEFLEGRRYLVVVDDIWHK-SAWESLR 288 (718)
Q Consensus 254 --~~~~l~~~l~~~L~~k~~LlVLDdv~~~-~~~~~l~ 288 (718)
..-.+++.++. +++.+|||+||+... ..+.++.
T Consensus 146 ~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHHH
Confidence 11223344444 589999999999653 3344443
No 499
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.24 Score=49.95 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHH-hcCCcccchHHhhhcC---HHH
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKS-FQKPKIEDLELMERMT---EED 257 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~-l~~~~~~~~~~~~~~~---~~~ 257 (718)
+.-+++=|+|+.|.||||+|.+++-. .+..-...+|+..-..+++..+. ++... +..-.. ....+ ..+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v-----~~~~~~e~q~~ 129 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLV-----SQPDTGEQQLE 129 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeE-----ecCCCHHHHHH
Confidence 34679999999999999999988774 44444578999999999988643 33333 221000 01111 223
Q ss_pred HHHHHHHHhcCceEEEEEecCCC
Q 047642 258 LELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
++..+......+--|||+|-|-.
T Consensus 130 i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCcc
Confidence 33444444444456889998743
No 500
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.25 E-value=0.15 Score=49.02 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999984
Done!