Query 047642
Match_columns 718
No_of_seqs 553 out of 3860
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.4E-47 2.9E-51 423.7 25.1 309 164-493 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-37 4.4E-42 385.6 23.5 307 155-491 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.3E-37 3.2E-41 345.4 14.2 289 162-484 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.3E-38 320.7 24.0 298 159-489 122-450 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.8 9.7E-21 3.3E-25 163.0 4.0 106 4-109 1-114 (115)
6 4fcg_A Uncharacterized protein 99.8 2.6E-19 8.9E-24 187.4 12.2 188 509-707 104-311 (328)
7 4fcg_A Uncharacterized protein 99.8 2.5E-18 8.7E-23 179.8 12.4 197 508-715 80-295 (328)
8 1ogq_A PGIP-2, polygalacturona 99.7 6.9E-18 2.4E-22 175.4 11.8 198 508-715 75-286 (313)
9 1ogq_A PGIP-2, polygalacturona 99.7 9.8E-18 3.4E-22 174.2 12.4 195 509-713 50-260 (313)
10 3rgz_A Protein brassinosteroid 99.7 3.9E-17 1.3E-21 191.0 12.9 198 508-714 441-721 (768)
11 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-16 5.1E-21 163.1 13.1 195 507-711 30-239 (285)
12 3rgz_A Protein brassinosteroid 99.7 1.1E-16 3.8E-21 187.2 13.6 197 509-714 418-697 (768)
13 2z66_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 163.6 10.7 197 507-711 26-237 (306)
14 1p9a_G Platelet glycoprotein I 99.6 6.7E-16 2.3E-20 158.4 12.3 190 509-710 10-208 (290)
15 3zyi_A Leucine-rich repeat-con 99.6 7.8E-16 2.7E-20 168.7 13.5 193 507-710 73-279 (452)
16 2z80_A TOLL-like receptor 2, v 99.6 9.3E-16 3.2E-20 162.3 13.1 194 507-710 50-290 (353)
17 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-15 4.5E-20 156.0 12.7 189 513-711 15-215 (285)
18 3zyj_A Leucine-rich repeat-con 99.6 1.1E-15 3.9E-20 166.7 12.7 193 507-710 62-268 (440)
19 2o6q_A Variable lymphocyte rec 99.6 2.3E-15 7.8E-20 152.9 13.1 189 511-710 18-218 (270)
20 2z66_A Variable lymphocyte rec 99.6 7.7E-16 2.6E-20 159.5 9.7 190 514-711 12-213 (306)
21 2z62_A TOLL-like receptor 4, v 99.6 9.7E-16 3.3E-20 156.2 10.2 198 507-713 26-240 (276)
22 3rfs_A Internalin B, repeat mo 99.6 2E-15 6.7E-20 153.5 12.2 164 510-685 42-215 (272)
23 1w5s_A Origin recognition comp 99.6 4.3E-15 1.5E-19 160.8 14.9 303 160-477 21-384 (412)
24 3oja_B Anopheles plasmodium-re 99.6 2E-15 6.9E-20 171.4 12.0 81 630-710 250-337 (597)
25 2ft3_A Biglycan; proteoglycan, 99.6 6E-15 2.1E-19 154.6 14.6 192 508-711 53-278 (332)
26 1h6u_A Internalin H; cell adhe 99.6 6.3E-15 2.2E-19 152.6 14.0 186 509-711 41-231 (308)
27 2z80_A TOLL-like receptor 2, v 99.6 2.9E-15 9.8E-20 158.5 11.6 186 516-711 38-236 (353)
28 2id5_A Lingo-1, leucine rich r 99.6 6.4E-15 2.2E-19 162.6 14.7 193 508-710 31-237 (477)
29 1xku_A Decorin; proteoglycan, 99.6 5.5E-15 1.9E-19 154.8 13.5 191 508-710 51-276 (330)
30 3oja_B Anopheles plasmodium-re 99.6 2.2E-15 7.5E-20 171.0 10.9 123 510-641 52-178 (597)
31 3o6n_A APL1; leucine-rich repe 99.6 3E-15 1E-19 160.7 11.3 124 509-641 45-172 (390)
32 3o6n_A APL1; leucine-rich repe 99.6 4.1E-15 1.4E-19 159.7 12.0 81 630-710 244-331 (390)
33 3zyj_A Leucine-rich repeat-con 99.6 3.6E-15 1.2E-19 162.8 11.5 192 507-709 86-291 (440)
34 3zyi_A Leucine-rich repeat-con 99.6 5.4E-15 1.9E-19 161.9 11.7 192 507-709 97-302 (452)
35 4eco_A Uncharacterized protein 99.6 1.2E-15 4.2E-20 174.2 6.4 195 507-710 204-446 (636)
36 4ecn_A Leucine-rich repeat pro 99.6 2.6E-15 9E-20 174.9 8.4 149 557-711 489-658 (876)
37 2ft3_A Biglycan; proteoglycan, 99.6 1.3E-14 4.4E-19 152.1 12.8 189 510-710 34-254 (332)
38 3v47_A TOLL-like receptor 5B a 99.6 8.3E-15 2.8E-19 160.7 11.6 127 507-641 28-161 (455)
39 1h6u_A Internalin H; cell adhe 99.6 1E-14 3.4E-19 151.1 11.4 164 530-711 40-209 (308)
40 3rfs_A Internalin B, repeat mo 99.6 6.2E-15 2.1E-19 149.8 9.3 172 530-714 40-222 (272)
41 4eco_A Uncharacterized protein 99.5 4.9E-15 1.7E-19 169.3 9.2 193 508-710 248-470 (636)
42 1p9a_G Platelet glycoprotein I 99.5 1.2E-14 4E-19 149.0 10.6 168 530-710 9-185 (290)
43 2id5_A Lingo-1, leucine rich r 99.5 2.9E-14 1E-18 157.3 14.4 194 508-710 55-285 (477)
44 2xwt_C Thyrotropin receptor; s 99.5 1.3E-14 4.3E-19 144.5 9.5 189 507-708 29-237 (239)
45 3m19_A Variable lymphocyte rec 99.5 2.2E-14 7.7E-19 143.8 11.0 164 512-685 17-189 (251)
46 3vq2_A TLR4, TOLL-like recepto 99.5 1.4E-14 4.9E-19 165.0 10.8 127 583-709 419-557 (606)
47 3v47_A TOLL-like receptor 5B a 99.5 3.3E-14 1.1E-18 155.9 12.9 127 588-714 275-412 (455)
48 1xku_A Decorin; proteoglycan, 99.5 2.7E-14 9.4E-19 149.5 11.7 189 510-710 32-253 (330)
49 2z62_A TOLL-like receptor 4, v 99.5 1.5E-14 5E-19 147.4 9.1 175 527-711 24-214 (276)
50 4ecn_A Leucine-rich repeat pro 99.5 1.8E-14 6E-19 168.0 10.8 193 507-709 489-709 (876)
51 2z7x_B TOLL-like receptor 1, v 99.5 4.7E-14 1.6E-18 157.5 13.8 104 508-623 20-127 (520)
52 1h6t_A Internalin B; cell adhe 99.5 4E-14 1.4E-18 145.2 12.1 163 530-709 45-212 (291)
53 4glp_A Monocyte differentiatio 99.5 1.6E-14 5.5E-19 149.8 8.6 193 510-710 92-307 (310)
54 3oja_A Leucine-rich immune mol 99.5 1.2E-14 4.2E-19 160.2 8.1 190 509-710 34-250 (487)
55 2z81_A CD282 antigen, TOLL-lik 99.5 3.9E-14 1.3E-18 159.3 12.3 191 509-709 26-235 (549)
56 3t6q_A CD180 antigen; protein- 99.5 1.6E-14 5.4E-19 164.6 8.8 126 507-641 31-160 (606)
57 2o6q_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 141.4 13.0 169 507-685 35-215 (270)
58 4ezg_A Putative uncharacterize 99.5 2.6E-14 9E-19 137.6 8.5 144 558-710 43-194 (197)
59 1o6v_A Internalin A; bacterial 99.5 9.7E-14 3.3E-18 152.6 14.1 185 510-710 47-256 (466)
60 2z63_A TOLL-like receptor 4, v 99.5 3.5E-14 1.2E-18 160.4 10.8 197 510-714 326-535 (570)
61 4fmz_A Internalin; leucine ric 99.5 2E-13 6.9E-18 143.9 15.7 167 530-711 154-325 (347)
62 2z63_A TOLL-like receptor 4, v 99.5 4.8E-14 1.6E-18 159.3 11.6 126 507-641 26-156 (570)
63 3vq2_A TLR4, TOLL-like recepto 99.5 4E-14 1.4E-18 161.2 10.8 192 507-707 30-239 (606)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.1E-13 3.8E-18 156.0 14.2 106 507-624 50-159 (562)
65 3t6q_A CD180 antigen; protein- 99.5 4.7E-14 1.6E-18 160.7 10.9 194 508-711 277-490 (606)
66 3j0a_A TOLL-like receptor 5; m 99.5 7.8E-14 2.7E-18 164.8 12.9 127 507-641 22-155 (844)
67 2z7x_B TOLL-like receptor 1, v 99.5 9.3E-14 3.2E-18 155.1 12.5 118 512-641 3-122 (520)
68 4fmz_A Internalin; leucine ric 99.5 2.1E-13 7.2E-18 143.7 14.6 188 508-711 65-257 (347)
69 2ast_B S-phase kinase-associat 99.5 1E-14 3.5E-19 153.1 4.4 197 509-715 93-311 (336)
70 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 138.8 11.6 147 559-710 35-192 (251)
71 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-13 3.8E-18 155.6 12.9 194 509-712 310-512 (549)
72 1wwl_A Monocyte differentiatio 99.5 2E-14 7E-19 149.1 5.8 191 508-711 94-310 (312)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.1E-13 3.8E-18 156.0 12.3 140 512-663 34-179 (562)
74 3j0a_A TOLL-like receptor 5; m 99.5 1E-13 3.4E-18 163.8 11.6 185 517-712 12-219 (844)
75 1m9s_A Internalin B; cell inva 99.5 8.8E-14 3E-18 156.6 10.5 164 530-710 42-210 (605)
76 2xwt_C Thyrotropin receptor; s 99.5 7.7E-14 2.6E-18 138.8 7.9 175 529-715 29-222 (239)
77 3o53_A Protein LRIM1, AGAP0063 99.4 5.7E-14 2E-18 146.1 6.7 189 510-710 35-250 (317)
78 1ziw_A TOLL-like receptor 3; i 99.4 1.1E-13 3.8E-18 159.8 9.9 125 507-641 23-152 (680)
79 3bz5_A Internalin-J, INLJ; leu 99.4 4.3E-13 1.5E-17 146.5 13.4 179 510-711 43-247 (457)
80 1ziw_A TOLL-like receptor 3; i 99.4 2.8E-13 9.5E-18 156.5 12.3 161 527-696 21-194 (680)
81 1o6v_A Internalin A; bacterial 99.4 3.7E-13 1.3E-17 147.9 12.7 187 508-711 198-389 (466)
82 3cvr_A Invasion plasmid antige 99.4 1.4E-13 4.9E-18 153.1 9.0 160 509-696 80-253 (571)
83 3oja_A Leucine-rich immune mol 99.4 1.4E-13 4.9E-18 151.7 8.8 144 556-705 117-270 (487)
84 1wwl_A Monocyte differentiatio 99.4 6.7E-14 2.3E-18 145.2 5.6 170 530-711 94-288 (312)
85 4b8c_D Glucose-repressible alc 99.4 1.6E-13 5.6E-18 158.4 9.3 157 509-671 173-336 (727)
86 3o53_A Protein LRIM1, AGAP0063 99.4 1.6E-13 5.6E-18 142.6 7.9 184 509-708 80-273 (317)
87 1h6t_A Internalin B; cell adhe 99.4 2.6E-13 8.9E-18 139.1 9.3 147 555-711 42-192 (291)
88 2qen_A Walker-type ATPase; unk 99.4 8.3E-12 2.8E-16 131.5 20.2 291 158-485 9-349 (350)
89 1xeu_A Internalin C; cellular 99.4 3.1E-13 1E-17 136.3 8.6 139 530-685 40-182 (263)
90 2ca6_A RAN GTPase-activating p 99.4 3E-13 1E-17 144.8 8.6 202 508-711 59-317 (386)
91 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-12 3.6E-17 148.0 12.0 58 651-711 239-298 (622)
92 3bz5_A Internalin-J, INLJ; leu 99.4 6.7E-13 2.3E-17 145.0 9.9 136 530-685 41-180 (457)
93 4ezg_A Putative uncharacterize 99.4 9.6E-13 3.3E-17 126.5 9.9 143 530-685 43-191 (197)
94 2v70_A SLIT-2, SLIT homolog 2 99.4 6.1E-13 2.1E-17 130.3 8.2 139 534-685 14-163 (220)
95 4glp_A Monocyte differentiatio 99.4 1.9E-13 6.6E-18 141.6 4.8 191 510-711 65-286 (310)
96 1m9s_A Internalin B; cell inva 99.4 4.7E-13 1.6E-17 150.6 8.3 147 555-711 39-189 (605)
97 2v9t_B SLIT homolog 2 protein 99.4 9.6E-13 3.3E-17 128.9 9.3 121 559-685 32-162 (220)
98 2o6s_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 130.4 6.5 155 529-698 26-190 (208)
99 2ca6_A RAN GTPase-activating p 99.4 3E-13 1E-17 144.9 5.8 203 508-711 31-288 (386)
100 2v1u_A Cell division control p 99.4 2.9E-11 9.9E-16 129.3 20.7 288 160-465 18-352 (387)
101 4g8a_A TOLL-like receptor 4; l 99.4 7.6E-13 2.6E-17 151.3 8.8 190 508-707 51-259 (635)
102 1fnn_A CDC6P, cell division co 99.3 5.8E-11 2E-15 127.1 22.4 312 161-489 17-385 (389)
103 3e6j_A Variable lymphocyte rec 99.3 1.9E-12 6.5E-17 127.7 9.8 141 533-685 21-169 (229)
104 2ast_B S-phase kinase-associat 99.3 2.1E-13 7.2E-18 143.0 2.9 190 510-707 71-282 (336)
105 2qby_B CDC6 homolog 3, cell di 99.3 2.4E-11 8.4E-16 129.8 18.9 287 161-465 20-340 (384)
106 2fna_A Conserved hypothetical 99.3 3.1E-11 1.1E-15 127.5 18.8 287 159-484 11-356 (357)
107 2o6s_A Variable lymphocyte rec 99.3 3.4E-12 1.1E-16 123.9 10.0 158 507-676 26-190 (208)
108 2v9t_B SLIT homolog 2 protein 99.3 2.8E-12 9.6E-17 125.6 9.1 142 513-664 15-163 (220)
109 1dce_A Protein (RAB geranylger 99.3 4.5E-14 1.5E-18 158.0 -4.5 95 589-685 442-543 (567)
110 4g8a_A TOLL-like receptor 4; l 99.3 5.5E-12 1.9E-16 144.2 11.9 175 525-709 46-236 (635)
111 4b8c_D Glucose-repressible alc 99.3 4E-13 1.4E-17 155.1 2.3 116 580-695 216-338 (727)
112 2v70_A SLIT-2, SLIT homolog 2 99.3 4.2E-12 1.4E-16 124.3 9.3 143 512-664 14-164 (220)
113 1dce_A Protein (RAB geranylger 99.3 8.8E-14 3E-18 155.6 -3.3 170 530-711 348-547 (567)
114 2qby_A CDC6 homolog 1, cell di 99.3 9.8E-12 3.4E-16 132.9 12.7 290 160-464 19-348 (386)
115 3g06_A SSPH2 (leucine-rich rep 99.3 9.7E-12 3.3E-16 140.1 12.6 102 507-630 59-160 (622)
116 3e6j_A Variable lymphocyte rec 99.3 8.9E-12 3.1E-16 122.8 10.7 140 514-664 24-170 (229)
117 1xeu_A Internalin C; cellular 99.3 9E-12 3.1E-16 125.5 9.9 144 555-709 37-184 (263)
118 1jl5_A Outer protein YOPM; leu 99.3 1.2E-11 4E-16 135.0 11.5 156 508-685 90-247 (454)
119 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 117.8 7.7 134 556-711 21-161 (168)
120 2xot_A Amphoterin-induced prot 99.3 8.5E-12 2.9E-16 132.1 9.9 163 512-685 21-199 (361)
121 3goz_A Leucine-rich repeat-con 99.3 4.4E-12 1.5E-16 134.4 7.0 36 589-624 139-180 (362)
122 3cvr_A Invasion plasmid antige 99.2 1.2E-11 4.1E-16 137.7 10.5 173 510-712 60-245 (571)
123 1ds9_A Outer arm dynein; leuci 99.2 6.5E-13 2.2E-17 127.9 -0.7 144 558-703 17-180 (198)
124 3goz_A Leucine-rich repeat-con 99.2 9E-12 3.1E-16 132.0 7.9 197 507-708 20-264 (362)
125 2xot_A Amphoterin-induced prot 99.2 1.4E-11 4.9E-16 130.3 9.4 164 534-710 21-202 (361)
126 2je0_A Acidic leucine-rich nuc 99.2 5.6E-12 1.9E-16 115.1 4.7 127 557-705 15-148 (149)
127 2ell_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 115.7 6.5 106 586-711 22-134 (168)
128 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.7E-16 116.0 6.9 79 555-641 15-95 (176)
129 1z7x_W Ribonuclease inhibitor; 99.2 3.7E-12 1.3E-16 139.7 3.4 177 530-710 55-269 (461)
130 4ay9_X Follicle-stimulating ho 99.2 4.5E-11 1.5E-15 126.0 10.9 200 507-717 28-243 (350)
131 4ay9_X Follicle-stimulating ho 99.2 2.9E-11 1E-15 127.4 9.1 191 514-715 14-219 (350)
132 1jl5_A Outer protein YOPM; leu 99.2 4.5E-11 1.5E-15 130.4 10.3 173 511-711 73-251 (454)
133 2je0_A Acidic leucine-rich nuc 99.2 3.6E-11 1.2E-15 109.7 7.9 122 509-641 17-147 (149)
134 1z7x_W Ribonuclease inhibitor; 99.2 6.1E-12 2.1E-16 138.0 1.9 200 509-710 170-411 (461)
135 1w8a_A SLIT protein; signaling 99.1 4E-11 1.4E-15 114.6 7.2 118 534-664 11-137 (192)
136 1a9n_A U2A', U2A'; complex (nu 99.1 3.3E-11 1.1E-15 113.4 5.9 100 530-641 18-120 (176)
137 1w8a_A SLIT protein; signaling 99.1 4.8E-11 1.6E-15 114.0 7.1 116 562-685 11-136 (192)
138 2wfh_A SLIT homolog 2 protein 99.1 9.6E-11 3.3E-15 112.0 9.1 100 559-664 31-137 (193)
139 1ds9_A Outer arm dynein; leuci 99.1 1.7E-12 5.9E-17 124.8 -3.7 124 550-681 39-180 (198)
140 3ogk_B Coronatine-insensitive 99.1 6.1E-11 2.1E-15 134.5 8.2 149 555-706 188-351 (592)
141 2wfh_A SLIT homolog 2 protein 99.1 1.6E-10 5.6E-15 110.3 8.3 116 562-685 13-136 (193)
142 1njg_A DNA polymerase III subu 99.0 3E-09 1E-13 105.4 13.7 197 161-376 23-227 (250)
143 3ogk_B Coronatine-insensitive 99.0 5.5E-10 1.9E-14 126.6 9.1 198 508-711 163-392 (592)
144 2o6r_A Variable lymphocyte rec 99.0 6.9E-10 2.4E-14 104.4 8.1 102 559-685 28-134 (177)
145 2o6r_A Variable lymphocyte rec 99.0 1.3E-09 4.6E-14 102.4 9.5 118 513-641 11-131 (177)
146 2chg_A Replication factor C sm 98.9 9.8E-09 3.4E-13 100.1 13.4 156 160-339 16-175 (226)
147 2p1m_B Transport inhibitor res 98.9 5.9E-10 2E-14 126.3 3.8 194 510-707 106-348 (594)
148 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 99.6 7.2 78 559-641 33-112 (174)
149 2r9u_A Variable lymphocyte rec 98.8 3.9E-09 1.3E-13 98.8 7.2 112 512-634 15-128 (174)
150 2p1m_B Transport inhibitor res 98.8 2E-09 6.9E-14 121.9 4.1 148 557-710 209-385 (594)
151 3g39_A Variable lymphocyte rec 98.8 1E-08 3.4E-13 95.6 7.7 97 533-641 11-109 (170)
152 3g39_A Variable lymphocyte rec 98.7 1.2E-08 4E-13 95.2 7.2 106 512-628 12-119 (170)
153 1hqc_A RUVB; extended AAA-ATPa 98.7 3.4E-08 1.2E-12 102.6 9.7 262 160-463 11-324 (324)
154 3un9_A NLR family member X1; l 98.7 6.2E-09 2.1E-13 110.0 3.7 151 530-685 71-249 (372)
155 1sxj_B Activator 1 37 kDa subu 98.7 4.5E-08 1.6E-12 101.5 9.5 174 160-366 20-199 (323)
156 3sb4_A Hypothetical leucine ri 98.6 5E-08 1.7E-12 101.6 7.4 95 610-704 225-328 (329)
157 3te6_A Regulatory protein SIR3 98.5 4E-07 1.4E-11 92.7 12.1 170 162-338 21-211 (318)
158 1jbk_A CLPB protein; beta barr 98.5 8.6E-08 2.9E-12 90.9 5.3 46 160-207 21-66 (195)
159 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.6E-12 99.1 6.8 86 530-624 30-116 (347)
160 1iqp_A RFCS; clamp loader, ext 98.4 2.6E-07 9E-12 95.8 7.9 154 161-340 25-184 (327)
161 2ifg_A High affinity nerve gro 98.4 4.1E-07 1.4E-11 95.3 7.9 86 549-641 22-110 (347)
162 3un9_A NLR family member X1; l 98.4 9.1E-08 3.1E-12 101.0 1.9 147 510-664 73-250 (372)
163 3h4m_A Proteasome-activating n 98.4 1E-06 3.5E-11 89.5 9.7 157 159-341 15-204 (285)
164 2ra8_A Uncharacterized protein 98.3 5.1E-07 1.7E-11 94.5 6.5 82 530-619 138-227 (362)
165 3sb4_A Hypothetical leucine ri 98.2 2.2E-06 7.4E-11 89.0 9.5 95 587-682 225-328 (329)
166 1jr3_A DNA polymerase III subu 98.2 4.5E-06 1.6E-10 88.2 11.9 169 161-338 16-191 (373)
167 2chq_A Replication factor C sm 98.2 2.7E-06 9.2E-11 87.8 9.1 153 161-340 17-176 (319)
168 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.2E-05 7.4E-10 78.4 15.2 154 160-339 5-191 (262)
169 3syl_A Protein CBBX; photosynt 98.2 2.7E-06 9.1E-11 87.5 8.4 153 162-339 32-218 (309)
170 4fdw_A Leucine rich hypothetic 98.1 7.1E-06 2.4E-10 87.4 10.4 148 553-709 174-357 (401)
171 4fdw_A Leucine rich hypothetic 98.1 9.2E-06 3.1E-10 86.5 11.1 184 509-707 180-380 (401)
172 2z4s_A Chromosomal replication 98.1 8E-06 2.7E-10 88.0 9.4 154 161-339 105-277 (440)
173 3n70_A Transport activator; si 98.1 7.8E-06 2.7E-10 73.6 7.7 46 162-207 2-47 (145)
174 2ra8_A Uncharacterized protein 98.0 5.5E-06 1.9E-10 86.7 7.1 128 580-709 164-319 (362)
175 3eie_A Vacuolar protein sortin 98.0 4.5E-05 1.5E-09 78.7 13.8 153 159-340 16-199 (322)
176 3rw6_A Nuclear RNA export fact 98.0 4.5E-06 1.6E-10 82.8 5.4 83 555-641 166-258 (267)
177 3pvs_A Replication-associated 98.0 2.5E-05 8.5E-10 84.1 10.9 146 161-339 26-179 (447)
178 1l8q_A Chromosomal replication 98.0 5.9E-05 2E-09 77.9 13.2 142 172-339 25-180 (324)
179 1d2n_A N-ethylmaleimide-sensit 97.9 3.2E-05 1.1E-09 77.7 10.8 151 161-336 33-210 (272)
180 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00025 8.6E-09 72.9 17.8 186 160-378 11-224 (322)
181 3bos_A Putative DNA replicatio 97.9 2.7E-06 9.1E-11 83.8 2.7 143 161-339 28-188 (242)
182 3u61_B DNA polymerase accessor 97.9 2.1E-05 7.1E-10 81.4 9.4 144 160-332 25-172 (324)
183 3uk6_A RUVB-like 2; hexameric 97.9 3.9E-05 1.3E-09 80.8 11.7 48 160-207 43-93 (368)
184 3cf0_A Transitional endoplasmi 97.9 0.00019 6.6E-09 73.1 16.5 154 160-339 14-200 (301)
185 1sxj_E Activator 1 40 kDa subu 97.9 3.2E-05 1.1E-09 81.1 10.7 166 161-339 14-207 (354)
186 2qp9_X Vacuolar protein sortin 97.9 0.00015 5.2E-09 75.7 14.6 152 160-340 50-232 (355)
187 3d8b_A Fidgetin-like protein 1 97.9 0.00011 3.9E-09 76.8 13.6 155 159-339 82-265 (357)
188 1sxj_D Activator 1 41 kDa subu 97.9 1E-05 3.5E-10 84.8 5.4 186 160-366 36-225 (353)
189 1sxj_A Activator 1 95 kDa subu 97.8 4.9E-05 1.7E-09 83.8 10.8 163 160-339 38-223 (516)
190 1io0_A Tropomodulin; LRR prote 97.8 1.1E-05 3.9E-10 75.8 4.8 111 530-641 35-158 (185)
191 3vfd_A Spastin; ATPase, microt 97.8 0.00048 1.6E-08 73.0 17.7 185 159-377 113-326 (389)
192 3co5_A Putative two-component 97.8 1.1E-05 3.9E-10 72.3 4.2 47 161-207 4-50 (143)
193 2p65_A Hypothetical protein PF 97.8 1E-05 3.4E-10 76.0 4.1 45 161-207 22-66 (187)
194 2w58_A DNAI, primosome compone 97.8 2E-05 6.7E-10 75.3 5.3 59 162-222 26-90 (202)
195 2zan_A Vacuolar protein sortin 97.8 0.00046 1.6E-08 74.3 16.6 157 159-340 132-316 (444)
196 1a5t_A Delta prime, HOLB; zinc 97.8 0.00022 7.5E-09 73.9 13.4 144 168-338 9-180 (334)
197 3ec2_A DNA replication protein 97.7 1.9E-05 6.6E-10 73.9 4.7 100 184-306 38-142 (180)
198 3b9p_A CG5977-PA, isoform A; A 97.7 0.00048 1.7E-08 69.9 15.6 181 160-378 20-234 (297)
199 2gno_A DNA polymerase III, gam 97.7 0.00019 6.4E-09 73.0 12.2 145 166-338 2-152 (305)
200 4b4t_J 26S protease regulatory 97.7 0.00013 4.5E-09 76.1 10.7 157 158-340 145-334 (405)
201 4b4t_L 26S protease subunit RP 97.7 0.00022 7.5E-09 75.6 12.5 156 158-339 178-366 (437)
202 3hu3_A Transitional endoplasmi 97.7 0.00022 7.4E-09 77.5 12.1 154 161-340 204-387 (489)
203 1lv7_A FTSH; alpha/beta domain 97.7 0.00016 5.6E-09 71.8 10.3 49 159-207 10-68 (257)
204 3pfi_A Holliday junction ATP-d 97.6 0.0003 1E-08 73.0 12.6 146 160-339 28-198 (338)
205 1sxj_C Activator 1 40 kDa subu 97.6 0.00013 4.6E-09 75.7 8.8 147 161-338 25-182 (340)
206 4b4t_H 26S protease regulatory 97.6 0.00023 7.8E-09 75.3 10.3 155 160-340 208-395 (467)
207 2bjv_A PSP operon transcriptio 97.6 0.00029 9.9E-09 70.3 10.7 47 161-207 6-52 (265)
208 3pxg_A Negative regulator of g 97.6 0.00011 3.9E-09 79.7 8.3 149 161-339 180-339 (468)
209 2ce7_A Cell division protein F 97.5 0.0007 2.4E-08 72.9 13.3 154 160-339 15-200 (476)
210 1io0_A Tropomodulin; LRR prote 97.5 3.3E-05 1.1E-09 72.6 2.5 75 550-625 27-107 (185)
211 1qvr_A CLPB protein; coiled co 97.5 0.00017 5.7E-09 84.6 8.8 45 161-207 170-214 (854)
212 4b4t_I 26S protease regulatory 97.5 0.00038 1.3E-08 72.9 10.3 156 158-340 179-368 (437)
213 4b4t_M 26S protease regulatory 97.5 0.0002 7E-09 75.8 8.3 154 158-338 178-365 (434)
214 3rw6_A Nuclear RNA export fact 97.4 3.3E-05 1.1E-09 76.6 1.7 56 585-641 167-227 (267)
215 4fcw_A Chaperone protein CLPB; 97.4 0.00022 7.6E-09 73.0 7.7 46 162-207 18-70 (311)
216 4b4t_K 26S protease regulatory 97.4 0.00035 1.2E-08 74.0 8.8 50 158-207 169-229 (428)
217 2r62_A Cell division protease 97.4 6.2E-05 2.1E-09 75.4 2.9 48 160-207 10-67 (268)
218 1ojl_A Transcriptional regulat 97.4 0.00016 5.4E-09 73.8 5.8 47 161-207 2-48 (304)
219 2kjq_A DNAA-related protein; s 97.4 0.00011 3.9E-09 66.1 4.0 24 184-207 36-59 (149)
220 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0014 4.7E-08 76.0 14.2 155 161-338 186-362 (758)
221 1ofh_A ATP-dependent HSL prote 97.3 0.00041 1.4E-08 70.8 8.3 47 161-207 15-73 (310)
222 3pxi_A Negative regulator of g 97.3 0.00075 2.6E-08 78.1 10.5 150 161-338 180-338 (758)
223 3cf2_A TER ATPase, transitiona 97.2 0.001 3.5E-08 75.9 10.8 154 160-339 203-386 (806)
224 3e4g_A ATP synthase subunit S, 97.2 0.00045 1.5E-08 63.4 6.3 33 589-621 62-95 (176)
225 3pxi_A Negative regulator of g 97.1 0.00042 1.4E-08 80.2 6.1 47 161-207 491-544 (758)
226 2cvh_A DNA repair and recombin 97.0 0.0011 3.7E-08 63.9 7.5 91 184-280 20-116 (220)
227 2r44_A Uncharacterized protein 97.0 0.00085 2.9E-08 69.3 6.9 41 162-206 28-68 (331)
228 3e4g_A ATP synthase subunit S, 96.9 0.00076 2.6E-08 61.9 4.8 82 531-621 61-149 (176)
229 2qgz_A Helicase loader, putati 96.8 0.0003 1E-08 71.8 1.8 39 169-207 136-175 (308)
230 3t15_A Ribulose bisphosphate c 96.8 0.0018 6.2E-08 65.5 7.5 25 183-207 35-59 (293)
231 1ypw_A Transitional endoplasmi 96.8 0.0051 1.7E-07 71.2 12.1 154 160-339 203-386 (806)
232 2x8a_A Nuclear valosin-contain 96.8 0.013 4.6E-07 58.3 13.3 151 161-338 10-191 (274)
233 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0076 2.6E-07 65.3 12.0 151 158-338 28-214 (499)
234 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00084 2.9E-08 67.6 3.8 69 184-280 123-193 (331)
235 3lw7_A Adenylate kinase relate 96.6 0.0068 2.3E-07 55.6 8.8 20 185-204 2-21 (179)
236 3m6a_A ATP-dependent protease 96.5 0.0021 7.3E-08 70.9 5.3 47 161-207 81-131 (543)
237 1g5t_A COB(I)alamin adenosyltr 96.4 0.0094 3.2E-07 55.5 8.8 119 185-309 29-165 (196)
238 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0065 2.2E-07 70.3 8.8 46 162-207 459-511 (758)
239 1qvr_A CLPB protein; coiled co 96.2 0.013 4.4E-07 68.6 10.1 46 162-207 559-611 (854)
240 1vpl_A ABC transporter, ATP-bi 96.1 0.037 1.3E-06 54.4 11.4 22 185-206 42-63 (256)
241 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.011 3.9E-07 57.0 7.7 118 185-307 24-168 (235)
242 4a74_A DNA repair and recombin 96.0 0.031 1.1E-06 53.8 10.7 55 184-239 25-83 (231)
243 1n0w_A DNA repair protein RAD5 96.0 0.021 7.3E-07 55.5 9.6 96 184-280 24-130 (243)
244 2pze_A Cystic fibrosis transme 96.0 0.041 1.4E-06 53.1 11.3 51 262-312 141-195 (229)
245 3hr8_A Protein RECA; alpha and 96.0 0.012 4E-07 60.8 7.6 89 184-280 61-150 (356)
246 2b8t_A Thymidine kinase; deoxy 96.0 0.0028 9.5E-08 60.9 2.6 113 184-308 12-127 (223)
247 3c8u_A Fructokinase; YP_612366 95.9 0.005 1.7E-07 58.7 4.3 38 170-207 8-45 (208)
248 2pjz_A Hypothetical protein ST 95.9 0.046 1.6E-06 53.9 11.2 22 185-206 31-52 (263)
249 1rz3_A Hypothetical protein rb 95.9 0.0066 2.3E-07 57.5 4.9 41 166-206 3-44 (201)
250 2z43_A DNA repair and recombin 95.8 0.032 1.1E-06 57.1 9.9 95 184-279 107-213 (324)
251 3ice_A Transcription terminati 95.8 0.0041 1.4E-07 63.9 3.1 102 172-280 163-272 (422)
252 1in4_A RUVB, holliday junction 95.8 0.0038 1.3E-07 64.4 2.9 47 161-207 25-74 (334)
253 4fs7_A Uncharacterized protein 95.7 0.033 1.1E-06 58.8 10.1 139 554-702 248-393 (394)
254 2i1q_A DNA repair and recombin 95.6 0.025 8.6E-07 57.8 8.5 95 184-279 98-214 (322)
255 2zr9_A Protein RECA, recombina 95.6 0.019 6.6E-07 59.3 7.5 89 184-280 61-150 (349)
256 1v5w_A DMC1, meiotic recombina 95.5 0.051 1.7E-06 56.0 10.3 57 183-240 121-181 (343)
257 4fs7_A Uncharacterized protein 95.5 0.028 9.6E-07 59.3 8.5 121 584-707 249-376 (394)
258 1odf_A YGR205W, hypothetical 3 95.5 0.011 3.9E-07 59.3 5.1 27 181-207 28-54 (290)
259 1u94_A RECA protein, recombina 95.5 0.015 5.2E-07 60.1 6.2 88 184-279 63-151 (356)
260 2cbz_A Multidrug resistance-as 95.5 0.036 1.2E-06 53.8 8.5 23 185-207 32-54 (237)
261 1xp8_A RECA protein, recombina 95.4 0.026 8.9E-07 58.6 7.7 88 184-279 74-162 (366)
262 2nq2_C Hypothetical ABC transp 95.4 0.044 1.5E-06 53.8 8.8 23 185-207 32-54 (253)
263 3io5_A Recombination and repai 95.4 0.057 2E-06 54.1 9.6 89 186-280 30-122 (333)
264 2bbs_A Cystic fibrosis transme 95.4 0.083 2.8E-06 52.8 10.9 51 262-312 170-224 (290)
265 2c9o_A RUVB-like 1; hexameric 95.4 0.011 3.9E-07 63.7 4.9 47 161-207 37-86 (456)
266 3tui_C Methionine import ATP-b 95.3 0.069 2.4E-06 55.0 10.2 22 185-206 55-76 (366)
267 1qhx_A CPT, protein (chloramph 95.3 0.0076 2.6E-07 55.6 2.8 23 185-207 4-26 (178)
268 1zp6_A Hypothetical protein AT 95.3 0.011 3.7E-07 55.3 3.8 24 184-207 9-32 (191)
269 1ly1_A Polynucleotide kinase; 95.2 0.0092 3.2E-07 55.1 3.2 22 185-206 3-24 (181)
270 3kb2_A SPBC2 prophage-derived 95.2 0.0093 3.2E-07 54.6 3.0 22 185-206 2-23 (173)
271 3hws_A ATP-dependent CLP prote 95.2 0.0096 3.3E-07 62.2 3.4 46 162-207 16-74 (363)
272 1fx0_B ATP synthase beta chain 95.1 0.088 3E-06 56.0 10.5 107 172-280 154-277 (498)
273 3lda_A DNA repair protein RAD5 95.1 0.081 2.8E-06 55.5 10.1 57 184-241 178-238 (400)
274 3vaa_A Shikimate kinase, SK; s 95.0 0.0096 3.3E-07 56.2 2.7 23 184-206 25-47 (199)
275 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.012 4.3E-07 63.6 3.9 42 162-207 23-64 (500)
276 2px0_A Flagellar biosynthesis 95.0 0.046 1.6E-06 55.0 7.9 24 184-207 105-128 (296)
277 3bh0_A DNAB-like replicative h 95.0 0.077 2.6E-06 54.0 9.6 53 184-240 68-120 (315)
278 1sky_E F1-ATPase, F1-ATP synth 94.9 0.038 1.3E-06 58.7 7.2 61 173-235 141-202 (473)
279 1kgd_A CASK, peripheral plasma 94.9 0.012 3.9E-07 54.6 2.9 23 185-207 6-28 (180)
280 1kag_A SKI, shikimate kinase I 94.9 0.0098 3.4E-07 54.6 2.4 22 185-206 5-26 (173)
281 1ixz_A ATP-dependent metallopr 94.9 0.011 3.7E-07 58.2 2.8 48 160-207 15-72 (254)
282 3uie_A Adenylyl-sulfate kinase 94.9 0.015 5.2E-07 54.8 3.6 24 184-207 25-48 (200)
283 1z47_A CYSA, putative ABC-tran 94.8 0.1 3.5E-06 53.7 9.9 22 185-206 42-63 (355)
284 3trf_A Shikimate kinase, SK; a 94.8 0.012 4.1E-07 54.7 2.7 23 184-206 5-27 (185)
285 1pgv_A TMD-1, tropomodulin TMD 94.8 0.024 8E-07 53.0 4.6 109 530-641 40-164 (197)
286 3d31_A Sulfate/molybdate ABC t 94.8 0.15 5.3E-06 52.3 11.1 22 185-206 27-48 (348)
287 2ck3_D ATP synthase subunit be 94.8 0.058 2E-06 57.2 8.0 65 172-238 142-207 (482)
288 3kl4_A SRP54, signal recogniti 94.8 0.065 2.2E-06 56.7 8.5 25 183-207 96-120 (433)
289 2ga8_A Hypothetical 39.9 kDa p 94.8 0.02 6.8E-07 58.5 4.4 43 164-206 2-46 (359)
290 3jvv_A Twitching mobility prot 94.8 0.0059 2E-07 63.2 0.5 111 185-312 124-236 (356)
291 2rhm_A Putative kinase; P-loop 94.8 0.016 5.5E-07 54.1 3.5 23 184-206 5-27 (193)
292 2it1_A 362AA long hypothetical 94.8 0.13 4.4E-06 53.1 10.5 22 185-206 30-51 (362)
293 3cf2_A TER ATPase, transitiona 94.7 0.023 7.9E-07 64.8 5.3 48 160-207 476-534 (806)
294 1gvn_B Zeta; postsegregational 94.7 0.024 8.3E-07 56.8 4.9 24 183-206 32-55 (287)
295 1nks_A Adenylate kinase; therm 94.7 0.015 5.3E-07 54.2 3.3 23 185-207 2-24 (194)
296 1knq_A Gluconate kinase; ALFA/ 94.7 0.02 7E-07 52.5 3.9 23 184-206 8-30 (175)
297 2qt1_A Nicotinamide riboside k 94.6 0.02 6.8E-07 54.3 3.8 24 183-206 20-43 (207)
298 1pzn_A RAD51, DNA repair and r 94.6 0.088 3E-06 54.3 8.9 97 183-280 130-242 (349)
299 1iy2_A ATP-dependent metallopr 94.6 0.016 5.6E-07 57.8 3.3 50 158-207 37-96 (278)
300 4gt6_A Cell surface protein; l 94.6 0.073 2.5E-06 56.0 8.6 123 584-709 261-390 (394)
301 4gp7_A Metallophosphoesterase; 94.6 0.016 5.6E-07 53.1 3.0 23 184-206 9-31 (171)
302 1uf9_A TT1252 protein; P-loop, 94.6 0.02 6.7E-07 54.0 3.5 25 182-206 6-30 (203)
303 3rlf_A Maltose/maltodextrin im 94.5 0.11 3.9E-06 53.7 9.5 22 185-206 30-51 (381)
304 3rfe_A Platelet glycoprotein I 94.5 0.037 1.3E-06 48.0 5.0 54 563-623 12-67 (130)
305 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.5E-07 53.5 3.3 22 185-206 3-24 (189)
306 2yyz_A Sugar ABC transporter, 94.5 0.14 4.7E-06 52.9 10.0 22 185-206 30-51 (359)
307 3t61_A Gluconokinase; PSI-biol 94.5 0.014 4.7E-07 55.2 2.3 24 184-207 18-41 (202)
308 3tr0_A Guanylate kinase, GMP k 94.5 0.017 6E-07 54.5 3.1 22 185-206 8-29 (205)
309 2xxa_A Signal recognition part 94.5 0.11 3.7E-06 55.2 9.5 25 183-207 99-123 (433)
310 3asz_A Uridine kinase; cytidin 94.5 0.021 7.1E-07 54.3 3.6 24 183-206 5-28 (211)
311 4eun_A Thermoresistant glucoki 94.5 0.018 6.2E-07 54.3 3.1 24 184-207 29-52 (200)
312 1kht_A Adenylate kinase; phosp 94.5 0.017 5.9E-07 53.8 2.9 22 185-206 4-25 (192)
313 1ex7_A Guanylate kinase; subst 94.5 0.012 4.1E-07 54.6 1.7 22 185-206 2-23 (186)
314 1tev_A UMP-CMP kinase; ploop, 94.4 0.02 6.7E-07 53.6 3.2 23 184-206 3-25 (196)
315 1zuh_A Shikimate kinase; alpha 94.4 0.017 5.8E-07 52.7 2.7 23 184-206 7-29 (168)
316 1g8p_A Magnesium-chelatase 38 94.4 0.015 5.1E-07 60.2 2.6 46 160-207 23-68 (350)
317 3iij_A Coilin-interacting nucl 94.4 0.015 5.1E-07 53.8 2.3 24 184-207 11-34 (180)
318 3tqc_A Pantothenate kinase; bi 94.4 0.023 8E-07 57.6 3.9 43 164-206 70-114 (321)
319 2jaq_A Deoxyguanosine kinase; 94.4 0.018 6.2E-07 54.3 2.9 22 186-207 2-23 (205)
320 2if2_A Dephospho-COA kinase; a 94.4 0.019 6.5E-07 54.3 3.0 22 185-206 2-23 (204)
321 2ze6_A Isopentenyl transferase 94.4 0.019 6.7E-07 56.4 3.2 23 185-207 2-24 (253)
322 1uj2_A Uridine-cytidine kinase 94.4 0.02 7E-07 56.2 3.3 24 183-206 21-44 (252)
323 1y63_A LMAJ004144AAA protein; 94.4 0.02 6.8E-07 53.2 3.1 23 184-206 10-32 (184)
324 1ye8_A Protein THEP1, hypothet 94.4 0.021 7.1E-07 52.8 3.1 22 186-207 2-23 (178)
325 3tlx_A Adenylate kinase 2; str 94.4 0.024 8.2E-07 55.4 3.7 25 182-206 27-51 (243)
326 1jjv_A Dephospho-COA kinase; P 94.4 0.022 7.5E-07 53.9 3.4 22 185-206 3-24 (206)
327 3tau_A Guanylate kinase, GMP k 94.4 0.021 7.1E-07 54.3 3.2 24 184-207 8-31 (208)
328 2p5t_B PEZT; postsegregational 94.3 0.031 1.1E-06 55.0 4.5 37 170-206 15-54 (253)
329 2qor_A Guanylate kinase; phosp 94.3 0.016 5.5E-07 54.9 2.3 24 184-207 12-35 (204)
330 1ukz_A Uridylate kinase; trans 94.3 0.023 8E-07 53.6 3.4 24 183-206 14-37 (203)
331 1cke_A CK, MSSA, protein (cyti 94.3 0.02 6.7E-07 55.2 3.0 22 185-206 6-27 (227)
332 2j41_A Guanylate kinase; GMP, 94.3 0.02 6.9E-07 54.2 2.9 23 185-207 7-29 (207)
333 3a00_A Guanylate kinase, GMP k 94.3 0.017 5.7E-07 53.9 2.3 22 185-206 2-23 (186)
334 1j8m_F SRP54, signal recogniti 94.3 0.12 3.9E-06 52.0 8.6 24 184-207 98-121 (297)
335 2c95_A Adenylate kinase 1; tra 94.3 0.022 7.4E-07 53.4 3.1 23 184-206 9-31 (196)
336 1vma_A Cell division protein F 94.2 0.076 2.6E-06 53.6 7.2 25 183-207 103-127 (306)
337 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.024 8.2E-07 56.0 3.3 23 184-206 4-26 (260)
338 3dm5_A SRP54, signal recogniti 94.2 0.057 1.9E-06 57.1 6.3 25 183-207 99-123 (443)
339 1um8_A ATP-dependent CLP prote 94.2 0.025 8.7E-07 59.3 3.6 46 162-207 22-95 (376)
340 3cm0_A Adenylate kinase; ATP-b 94.2 0.024 8.3E-07 52.6 3.2 23 184-206 4-26 (186)
341 2orw_A Thymidine kinase; TMTK, 94.1 0.0081 2.8E-07 55.9 -0.2 22 185-206 4-25 (184)
342 2yvu_A Probable adenylyl-sulfa 94.1 0.025 8.6E-07 52.6 3.2 25 183-207 12-36 (186)
343 1via_A Shikimate kinase; struc 94.1 0.022 7.5E-07 52.4 2.7 21 186-206 6-26 (175)
344 1qf9_A UMP/CMP kinase, protein 94.1 0.026 9E-07 52.6 3.3 23 184-206 6-28 (194)
345 3llm_A ATP-dependent RNA helic 94.0 0.2 6.9E-06 48.3 9.7 108 169-281 65-188 (235)
346 1lvg_A Guanylate kinase, GMP k 94.0 0.02 6.9E-07 53.9 2.3 22 185-206 5-26 (198)
347 2iyv_A Shikimate kinase, SK; t 94.0 0.019 6.6E-07 53.2 2.1 21 186-206 4-24 (184)
348 2bwj_A Adenylate kinase 5; pho 94.0 0.026 8.8E-07 53.0 3.0 23 184-206 12-34 (199)
349 2ffh_A Protein (FFH); SRP54, s 94.0 0.11 3.8E-06 54.8 8.2 24 184-207 98-121 (425)
350 2grj_A Dephospho-COA kinase; T 94.0 0.028 9.5E-07 52.6 3.2 24 183-206 11-34 (192)
351 4gt6_A Cell surface protein; l 94.0 0.58 2E-05 49.0 13.9 100 607-707 261-367 (394)
352 2plr_A DTMP kinase, probable t 94.0 0.027 9.3E-07 53.4 3.2 24 184-207 4-27 (213)
353 3rfe_A Platelet glycoprotein I 94.0 0.059 2E-06 46.7 5.0 49 591-641 11-62 (130)
354 1e6c_A Shikimate kinase; phosp 93.9 0.02 7E-07 52.3 2.1 22 185-206 3-24 (173)
355 3aez_A Pantothenate kinase; tr 93.9 0.031 1.1E-06 56.7 3.6 24 183-206 89-112 (312)
356 1xjc_A MOBB protein homolog; s 93.9 0.026 9E-07 51.3 2.8 24 184-207 4-27 (169)
357 2bbw_A Adenylate kinase 4, AK4 93.9 0.028 9.5E-07 55.0 3.1 23 184-206 27-49 (246)
358 2pt5_A Shikimate kinase, SK; a 93.9 0.027 9.3E-07 51.2 2.9 21 186-206 2-22 (168)
359 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.068 2.3E-06 54.7 6.1 107 185-310 172-278 (330)
360 2cdn_A Adenylate kinase; phosp 93.9 0.027 9.4E-07 53.0 3.0 23 184-206 20-42 (201)
361 3upu_A ATP-dependent DNA helic 93.9 0.18 6.1E-06 54.3 9.8 42 163-207 23-68 (459)
362 2vli_A Antibiotic resistance p 93.8 0.019 6.4E-07 53.1 1.7 23 184-206 5-27 (183)
363 2pbr_A DTMP kinase, thymidylat 93.8 0.029 9.8E-07 52.4 2.9 22 186-207 2-23 (195)
364 1jr3_D DNA polymerase III, del 93.8 0.46 1.6E-05 48.8 12.4 137 172-338 8-155 (343)
365 3ney_A 55 kDa erythrocyte memb 93.8 0.028 9.7E-07 52.6 2.8 24 184-207 19-42 (197)
366 3fwy_A Light-independent proto 93.7 0.034 1.1E-06 56.5 3.5 40 183-224 47-86 (314)
367 1znw_A Guanylate kinase, GMP k 93.7 0.031 1.1E-06 53.0 3.1 22 185-206 21-42 (207)
368 3p32_A Probable GTPase RV1496/ 93.7 0.049 1.7E-06 56.5 4.8 38 170-207 65-102 (355)
369 2jeo_A Uridine-cytidine kinase 93.7 0.037 1.3E-06 54.1 3.6 23 184-206 25-47 (245)
370 3e70_C DPA, signal recognition 93.7 0.049 1.7E-06 55.6 4.6 25 183-207 128-152 (328)
371 4akg_A Glutathione S-transfera 93.7 0.58 2E-05 60.6 15.2 216 185-437 1268-1510(2695)
372 2hf9_A Probable hydrogenase ni 93.7 0.049 1.7E-06 52.3 4.4 25 183-207 37-61 (226)
373 3umf_A Adenylate kinase; rossm 93.7 0.038 1.3E-06 52.7 3.4 26 182-207 27-52 (217)
374 4e22_A Cytidylate kinase; P-lo 93.6 0.033 1.1E-06 54.7 3.1 23 184-206 27-49 (252)
375 1gtv_A TMK, thymidylate kinase 93.6 0.021 7.2E-07 54.4 1.7 22 186-207 2-23 (214)
376 1htw_A HI0065; nucleotide-bind 93.6 0.04 1.4E-06 49.7 3.3 24 184-207 33-56 (158)
377 1nn5_A Similar to deoxythymidy 93.6 0.034 1.2E-06 52.9 3.1 24 184-207 9-32 (215)
378 2f1r_A Molybdopterin-guanine d 93.6 0.027 9.3E-07 51.5 2.3 23 185-207 3-25 (171)
379 2wwf_A Thymidilate kinase, put 93.6 0.033 1.1E-06 52.9 3.0 24 184-207 10-33 (212)
380 3vr4_D V-type sodium ATPase su 93.6 0.072 2.5E-06 56.1 5.7 93 186-280 153-259 (465)
381 2f6r_A COA synthase, bifunctio 93.6 0.04 1.4E-06 55.0 3.7 24 183-206 74-97 (281)
382 3tif_A Uncharacterized ABC tra 93.5 0.057 1.9E-06 52.3 4.6 22 185-206 32-53 (235)
383 1tue_A Replication protein E1; 93.5 0.046 1.6E-06 51.1 3.6 37 170-207 45-81 (212)
384 1z6g_A Guanylate kinase; struc 93.5 0.031 1E-06 53.6 2.5 22 185-206 24-45 (218)
385 2pcj_A ABC transporter, lipopr 93.5 0.061 2.1E-06 51.7 4.6 22 185-206 31-52 (224)
386 1aky_A Adenylate kinase; ATP:A 93.4 0.035 1.2E-06 53.2 2.9 23 184-206 4-26 (220)
387 2z0h_A DTMP kinase, thymidylat 93.4 0.036 1.2E-06 51.8 2.9 22 186-207 2-23 (197)
388 2pez_A Bifunctional 3'-phospho 93.4 0.042 1.4E-06 50.6 3.3 23 184-206 5-27 (179)
389 3l0o_A Transcription terminati 93.4 0.014 4.6E-07 60.0 -0.2 52 172-225 164-216 (427)
390 1zd8_A GTP:AMP phosphotransfer 93.4 0.038 1.3E-06 53.2 3.0 23 184-206 7-29 (227)
391 2wsm_A Hydrogenase expression/ 93.4 0.049 1.7E-06 52.1 3.8 38 168-207 16-53 (221)
392 1g41_A Heat shock protein HSLU 93.3 0.036 1.2E-06 58.8 3.0 47 161-207 15-73 (444)
393 1sq5_A Pantothenate kinase; P- 93.3 0.071 2.4E-06 54.0 5.1 24 183-206 79-102 (308)
394 3e1s_A Exodeoxyribonuclease V, 93.3 0.26 8.8E-06 54.5 9.9 36 168-207 192-227 (574)
395 1vht_A Dephospho-COA kinase; s 93.3 0.046 1.6E-06 52.2 3.4 23 184-206 4-26 (218)
396 1rj9_A FTSY, signal recognitio 93.3 0.043 1.5E-06 55.4 3.3 23 184-206 102-124 (304)
397 3gfo_A Cobalt import ATP-bindi 93.3 0.065 2.2E-06 53.2 4.6 22 185-206 35-56 (275)
398 3fb4_A Adenylate kinase; psych 93.3 0.04 1.4E-06 52.6 2.9 21 186-206 2-22 (216)
399 1m7g_A Adenylylsulfate kinase; 93.2 0.047 1.6E-06 51.9 3.4 24 184-207 25-48 (211)
400 1zak_A Adenylate kinase; ATP:A 93.2 0.036 1.2E-06 53.2 2.5 24 184-207 5-28 (222)
401 2onk_A Molybdate/tungstate ABC 93.2 0.073 2.5E-06 51.7 4.7 22 185-206 25-46 (240)
402 1b0u_A Histidine permease; ABC 93.1 0.069 2.4E-06 52.6 4.6 22 185-206 33-54 (262)
403 1zu4_A FTSY; GTPase, signal re 93.1 0.087 3E-06 53.6 5.4 25 183-207 104-128 (320)
404 3dl0_A Adenylate kinase; phosp 93.1 0.043 1.5E-06 52.3 2.9 21 186-206 2-22 (216)
405 2i3b_A HCR-ntpase, human cance 93.1 0.039 1.3E-06 51.4 2.5 22 186-207 3-24 (189)
406 2v54_A DTMP kinase, thymidylat 93.1 0.044 1.5E-06 51.6 3.0 23 185-207 5-27 (204)
407 1s96_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 52.3 3.1 24 184-207 16-39 (219)
408 3b85_A Phosphate starvation-in 93.1 0.056 1.9E-06 51.2 3.6 22 186-207 24-45 (208)
409 4g1u_C Hemin import ATP-bindin 93.0 0.077 2.6E-06 52.4 4.7 22 185-206 38-59 (266)
410 1q57_A DNA primase/helicase; d 93.0 0.31 1.1E-05 53.1 10.0 55 184-241 242-296 (503)
411 2ff7_A Alpha-hemolysin translo 92.9 0.081 2.8E-06 51.6 4.6 22 185-206 36-57 (247)
412 2ehv_A Hypothetical protein PH 92.9 0.051 1.7E-06 53.0 3.1 22 185-206 31-52 (251)
413 3nwj_A ATSK2; P loop, shikimat 92.8 0.041 1.4E-06 53.8 2.3 22 185-206 49-70 (250)
414 1ji0_A ABC transporter; ATP bi 92.8 0.083 2.8E-06 51.3 4.6 22 185-206 33-54 (240)
415 1sgw_A Putative ABC transporte 92.8 0.072 2.4E-06 50.7 4.0 22 185-206 36-57 (214)
416 2olj_A Amino acid ABC transpor 92.8 0.083 2.8E-06 52.0 4.6 22 185-206 51-72 (263)
417 4a1f_A DNAB helicase, replicat 92.8 0.4 1.4E-05 48.9 9.8 54 184-241 46-99 (338)
418 3b9q_A Chloroplast SRP recepto 92.8 0.06 2.1E-06 54.3 3.6 24 184-207 100-123 (302)
419 3ake_A Cytidylate kinase; CMP 92.8 0.052 1.8E-06 51.3 2.9 21 186-206 4-24 (208)
420 1g6h_A High-affinity branched- 92.8 0.085 2.9E-06 51.9 4.6 22 185-206 34-55 (257)
421 2ixe_A Antigen peptide transpo 92.7 0.086 2.9E-06 52.2 4.6 22 185-206 46-67 (271)
422 3lnc_A Guanylate kinase, GMP k 92.7 0.038 1.3E-06 53.4 2.0 22 185-206 28-50 (231)
423 4edh_A DTMP kinase, thymidylat 92.7 0.26 8.8E-06 46.8 7.7 24 184-207 6-29 (213)
424 1mv5_A LMRA, multidrug resista 92.7 0.087 3E-06 51.3 4.5 23 184-206 28-50 (243)
425 3d3q_A TRNA delta(2)-isopenten 92.7 0.057 1.9E-06 55.0 3.2 23 185-207 8-30 (340)
426 3hjn_A DTMP kinase, thymidylat 92.6 0.31 1E-05 45.6 8.1 22 186-207 2-23 (197)
427 3b5x_A Lipid A export ATP-bind 92.6 0.43 1.5E-05 53.0 10.5 23 184-206 369-391 (582)
428 2q6t_A DNAB replication FORK h 92.6 0.34 1.2E-05 51.8 9.4 72 165-240 182-253 (444)
429 3be4_A Adenylate kinase; malar 92.5 0.06 2.1E-06 51.4 3.0 23 185-207 6-28 (217)
430 2r9v_A ATP synthase subunit al 92.5 0.31 1.1E-05 51.9 8.6 100 172-280 164-278 (515)
431 3r20_A Cytidylate kinase; stru 92.5 0.06 2E-06 51.8 3.0 23 184-206 9-31 (233)
432 3gqb_B V-type ATP synthase bet 92.5 0.11 3.7E-06 54.7 5.1 51 185-235 148-208 (464)
433 2yz2_A Putative ABC transporte 92.5 0.097 3.3E-06 51.7 4.6 22 185-206 34-55 (266)
434 1e4v_A Adenylate kinase; trans 92.5 0.062 2.1E-06 51.2 3.0 22 186-207 2-23 (214)
435 2wji_A Ferrous iron transport 92.4 0.09 3.1E-06 47.5 4.0 23 185-207 4-26 (165)
436 2xb4_A Adenylate kinase; ATP-b 92.4 0.06 2.1E-06 51.7 2.9 21 186-206 2-22 (223)
437 1np6_A Molybdopterin-guanine d 92.4 0.06 2.1E-06 49.3 2.7 24 184-207 6-29 (174)
438 3j16_B RLI1P; ribosome recycli 92.4 0.34 1.1E-05 53.8 9.2 125 186-315 105-289 (608)
439 3v9p_A DTMP kinase, thymidylat 92.4 0.14 4.9E-06 49.0 5.5 24 184-207 25-48 (227)
440 3k1j_A LON protease, ATP-depen 92.4 0.064 2.2E-06 60.0 3.4 43 161-207 41-83 (604)
441 1svm_A Large T antigen; AAA+ f 92.3 0.083 2.8E-06 54.9 4.0 36 171-206 156-191 (377)
442 2ihy_A ABC transporter, ATP-bi 92.2 0.11 3.7E-06 51.7 4.6 22 185-206 48-69 (279)
443 3oaa_A ATP synthase subunit al 92.1 0.44 1.5E-05 50.7 9.1 101 172-280 151-265 (513)
444 3crm_A TRNA delta(2)-isopenten 92.1 0.073 2.5E-06 53.8 3.2 23 185-207 6-28 (323)
445 1ltq_A Polynucleotide kinase; 92.1 0.073 2.5E-06 53.7 3.2 22 185-206 3-24 (301)
446 2qe7_A ATP synthase subunit al 92.1 0.18 6.2E-06 53.7 6.2 102 172-280 151-265 (502)
447 1oix_A RAS-related protein RAB 92.0 0.076 2.6E-06 49.4 3.0 24 184-207 29-52 (191)
448 2d2e_A SUFC protein; ABC-ATPas 92.0 0.075 2.6E-06 52.0 3.1 22 185-206 30-51 (250)
449 2og2_A Putative signal recogni 92.0 0.084 2.9E-06 54.4 3.6 24 184-207 157-180 (359)
450 1ak2_A Adenylate kinase isoenz 92.0 0.073 2.5E-06 51.5 3.0 24 184-207 16-39 (233)
451 3a8t_A Adenylate isopentenyltr 91.9 0.085 2.9E-06 53.5 3.4 24 184-207 40-63 (339)
452 3nh6_A ATP-binding cassette SU 91.9 0.11 3.7E-06 52.3 4.2 23 184-206 80-102 (306)
453 2zu0_C Probable ATP-dependent 91.9 0.08 2.7E-06 52.4 3.1 22 185-206 47-68 (267)
454 2c61_A A-type ATP synthase non 91.9 0.16 5.6E-06 53.7 5.6 65 172-237 141-208 (469)
455 1fzq_A ADP-ribosylation factor 91.9 0.11 3.9E-06 47.7 4.0 25 183-207 15-39 (181)
456 2r6a_A DNAB helicase, replicat 91.9 0.47 1.6E-05 50.8 9.4 51 184-237 203-253 (454)
457 3lv8_A DTMP kinase, thymidylat 91.9 0.27 9.2E-06 47.4 6.7 24 184-207 27-50 (236)
458 2iw3_A Elongation factor 3A; a 91.8 0.88 3E-05 53.0 12.1 125 185-313 462-611 (986)
459 2zej_A Dardarin, leucine-rich 91.8 0.075 2.6E-06 49.1 2.7 22 186-207 4-25 (184)
460 3sr0_A Adenylate kinase; phosp 91.8 0.08 2.7E-06 50.0 2.9 81 186-280 2-85 (206)
461 2ghi_A Transport protein; mult 91.8 0.079 2.7E-06 52.2 3.0 23 185-207 47-69 (260)
462 1u0j_A DNA replication protein 91.8 0.14 4.7E-06 50.1 4.6 35 173-207 93-127 (267)
463 3zvl_A Bifunctional polynucleo 91.7 0.078 2.7E-06 56.2 3.1 25 183-207 257-281 (416)
464 4h09_A Hypothetical leucine ri 91.7 0.29 1E-05 51.0 7.5 124 553-685 211-343 (379)
465 1yrb_A ATP(GTP)binding protein 91.7 0.095 3.3E-06 51.5 3.5 25 183-207 13-37 (262)
466 2qi9_C Vitamin B12 import ATP- 91.7 0.083 2.9E-06 51.6 3.0 22 185-206 27-48 (249)
467 3exa_A TRNA delta(2)-isopenten 91.7 0.089 3E-06 52.7 3.2 24 184-207 3-26 (322)
468 1a7j_A Phosphoribulokinase; tr 91.7 0.046 1.6E-06 54.8 1.1 23 184-206 5-27 (290)
469 4tmk_A Protein (thymidylate ki 91.6 0.28 9.7E-06 46.5 6.5 23 185-207 4-26 (213)
470 2v9p_A Replication protein E1; 91.6 0.14 4.7E-06 51.5 4.5 23 184-206 126-148 (305)
471 3mfy_A V-type ATP synthase alp 91.6 0.25 8.6E-06 53.1 6.7 53 172-229 216-268 (588)
472 1q3t_A Cytidylate kinase; nucl 91.5 0.09 3.1E-06 50.9 3.0 24 183-206 15-38 (236)
473 2eyu_A Twitching motility prot 91.4 0.1 3.5E-06 51.3 3.3 112 184-311 25-137 (261)
474 2dyk_A GTP-binding protein; GT 91.4 0.11 3.8E-06 46.3 3.3 23 185-207 2-24 (161)
475 3end_A Light-independent proto 91.4 0.11 3.6E-06 52.7 3.5 42 183-226 40-81 (307)
476 1fx0_A ATP synthase alpha chai 91.4 0.17 5.9E-06 53.9 5.1 90 185-280 164-266 (507)
477 2qm8_A GTPase/ATPase; G protei 91.3 0.17 5.9E-06 51.8 5.1 35 172-206 43-77 (337)
478 3cmu_A Protein RECA, recombina 91.3 0.18 6.3E-06 62.8 6.0 89 183-279 1426-1515(2050)
479 2yhs_A FTSY, cell division pro 91.3 0.11 3.8E-06 55.5 3.7 25 183-207 292-316 (503)
480 3foz_A TRNA delta(2)-isopenten 91.3 0.1 3.6E-06 52.1 3.2 25 183-207 9-33 (316)
481 2ck3_A ATP synthase subunit al 91.3 0.37 1.3E-05 51.4 7.6 105 172-280 151-273 (510)
482 2f9l_A RAB11B, member RAS onco 91.2 0.099 3.4E-06 49.0 2.9 24 184-207 5-28 (199)
483 2qmh_A HPR kinase/phosphorylas 91.2 0.12 4E-06 48.1 3.2 24 184-207 34-57 (205)
484 1tq4_A IIGP1, interferon-induc 91.2 0.1 3.5E-06 54.9 3.2 24 183-206 68-91 (413)
485 2ce2_X GTPase HRAS; signaling 91.1 0.11 3.6E-06 46.6 2.9 22 186-207 5-26 (166)
486 2wjg_A FEOB, ferrous iron tran 91.1 0.13 4.3E-06 47.5 3.5 24 184-207 7-30 (188)
487 3fvq_A Fe(3+) IONS import ATP- 91.1 0.18 6E-06 51.9 4.8 22 185-206 31-52 (359)
488 2p67_A LAO/AO transport system 91.1 0.19 6.4E-06 51.7 5.1 25 182-206 54-78 (341)
489 1ls1_A Signal recognition part 91.1 0.12 4.1E-06 51.9 3.6 24 184-207 98-121 (295)
490 1cr0_A DNA primase/helicase; R 91.1 0.11 3.7E-06 52.3 3.2 52 185-239 36-87 (296)
491 1nlf_A Regulatory protein REPA 91.1 0.11 3.7E-06 51.8 3.2 22 185-206 31-52 (279)
492 2vp4_A Deoxynucleoside kinase; 91.1 0.095 3.2E-06 50.5 2.6 24 183-206 19-42 (230)
493 4eaq_A DTMP kinase, thymidylat 91.1 0.11 3.9E-06 50.0 3.2 24 184-207 26-49 (229)
494 4hlc_A DTMP kinase, thymidylat 91.1 0.24 8.3E-06 46.6 5.4 23 185-207 3-25 (205)
495 2ocp_A DGK, deoxyguanosine kin 91.0 0.12 4.2E-06 50.1 3.4 24 184-207 2-25 (241)
496 1pgv_A TMD-1, tropomodulin TMD 91.0 0.12 4.1E-06 48.2 3.1 122 551-685 33-167 (197)
497 3sop_A Neuronal-specific septi 90.9 0.12 4.1E-06 51.2 3.2 21 186-206 4-24 (270)
498 4h09_A Hypothetical leucine ri 90.9 0.72 2.5E-05 47.9 9.5 100 553-660 234-340 (379)
499 2dr3_A UPF0273 protein PH0284; 90.9 0.14 4.7E-06 49.7 3.6 38 185-224 24-61 (247)
500 1z2a_A RAS-related protein RAB 90.8 0.11 3.9E-06 46.6 2.8 24 184-207 5-28 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.4e-47 Score=423.67 Aligned_cols=309 Identities=20% Similarity=0.255 Sum_probs=247.8
Q ss_pred eeccccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhc--CccccCCCceEEEEEecCCC--CHHHHHHHHHHH
Q 047642 164 VGFEENTKMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVN--STDVKGGFDCRAWVCVTQEY--TTRDLLQKTIKS 238 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~l~~i~~~ 238 (718)
|||++++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34689999999999999999999998 67899999999999999985 889999999999
Q ss_pred hcCCcc-cchHHhhhcCHHHHHHHHHHHhcCc-eEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcCCC
Q 047642 239 FQKPKI-EDLELMERMTEEDLELHLYEFLEGR-RYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITDEK 316 (718)
Q Consensus 239 l~~~~~-~~~~~~~~~~~~~l~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~~~ 316 (718)
++.... ...+.....+.+++...+++.|.++ ||||||||||+.+++ .+.. .+||+||||||++.++..++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 986422 1111123345677889999999996 999999999998765 2211 1699999999999999887644
Q ss_pred CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc----------c-CChhHHHHHHHHhhcccc
Q 047642 317 NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR----------E-EIPHEWHTVKNHLWWHLT 385 (718)
Q Consensus 317 ~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~----------~-~~~~~w~~~~~~~~~~~~ 385 (718)
..+|++++|+.+|||+||.++||... .++.+++++.+|+++|+ . -....|..+ +.+.+...
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~-------~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP-------VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM-AQLNNKLE 356 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC---------CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHH-HHHHHHHH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC-------CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHH-HHhHHHhh
Confidence 46899999999999999999998643 24688999999999998 1 011246554 33333222
Q ss_pred C-CCCchHhHHHhcccCCChhhHHHHh-----------hccCCCCCCeecHHHHHHHHHHc--CCc-CCC-CCCHHHHHH
Q 047642 386 Q-DSDHVSPILALSYDELPYQLKSCFL-----------YLSLFPEDSLIDTEKLIRLWIAE--GFI-PEE-EQDMENVAE 449 (718)
Q Consensus 386 ~-~~~~i~~~l~~sy~~L~~~~k~cfl-----------~la~Fp~~~~i~~~~li~~W~a~--g~i-~~~-~~~~e~~~~ 449 (718)
. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+ ... +.+.+++++
T Consensus 357 ~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 357 SRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp HHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH
T ss_pred cccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH
Confidence 1 3567899999999999999999999 999999999999 8999999 999 333 567788888
Q ss_pred HHHHHHhhccccchhhccCCcEeEEEeCHHHHHHHHHhhhhcCc
Q 047642 450 EYLKELIDRSMIQIAERYLDKVKTCRIHDLIRELAIKKARALEF 493 (718)
Q Consensus 450 ~~l~~L~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e~~ 493 (718)
||++|+++||+++... +...+|+|||+||++|++++.++++
T Consensus 433 -~l~~L~~rsLl~~~~~--~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKR--MPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHTTTBSSCSEEEC--SSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHHHHcCCeeEecC--CCceEEEeChHHHHHHHHHHHHHHH
Confidence 9999999999998653 2346899999999999998876653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-37 Score=385.61 Aligned_cols=307 Identities=20% Similarity=0.308 Sum_probs=243.9
Q ss_pred CCCCCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-cCCC-ceEEEEEecCCCC--HHH
Q 047642 155 SSNAGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDV-KGGF-DCRAWVCVTQEYT--TRD 230 (718)
Q Consensus 155 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~ 230 (718)
.++.....||||++++++|.++|...+++.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34455677999999999999999877667899999999999999999999997543 5556 5677999998654 334
Q ss_pred HHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCc--eEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchh
Q 047642 231 LLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGR--RYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEP 308 (718)
Q Consensus 231 ~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~ 308 (718)
.+..++..+...... ......+.+++...++..|.++ |+||||||||+..+|..+ ++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESF--SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTT--CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhccc--ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 466777777653321 0012345678889999999877 999999999998776653 67999999999999
Q ss_pred hhhhcCCCCceeeccC-CCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc-------------cCChhHHH
Q 047642 309 VAMITDEKNFVYKLRF-LNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR-------------EEIPHEWH 374 (718)
Q Consensus 309 v~~~~~~~~~~~~l~~-L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~-------------~~~~~~w~ 374 (718)
++..+......+++++ |+.+||++||...++.. ++.+++++.+|+++|+ +.....|.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---------~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~ 339 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---------KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWA 339 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---------STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---------hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHH
Confidence 9866544457899996 99999999999998542 2344567899999997 22335788
Q ss_pred HHHHHhhccccC--------CCCchHhHHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHH
Q 047642 375 TVKNHLWWHLTQ--------DSDHVSPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMEN 446 (718)
Q Consensus 375 ~~~~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~ 446 (718)
..++.+...... ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------~~ 409 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TE 409 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------HH
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------HH
Confidence 888777543321 123588999999999999999999999999999999999999999654 46
Q ss_pred HHHHHHHHHhhccccchhhccCCcEeEEEeCHHHHHHHHHhhhhc
Q 047642 447 VAEEYLKELIDRSMIQIAERYLDKVKTCRIHDLIRELAIKKARAL 491 (718)
Q Consensus 447 ~~~~~l~~L~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~~e 491 (718)
.++.++++|+++||++.... +...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~--~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRN--GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEES--SSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecC--CCceEEEecHHHHHHHHhhhhHH
Confidence 68999999999999987543 44467999999999999987654
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.3e-37 Score=345.45 Aligned_cols=289 Identities=20% Similarity=0.200 Sum_probs=215.5
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCce-EEEEEecCCCCHHHHHHHHHHHhc
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDC-RAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 4789999999999999999999998778899986 899999999999888888877543
Q ss_pred CCc---ccchH--HhhhcCHHHHHHHHHHHh---cCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 241 KPK---IEDLE--LMERMTEEDLELHLYEFL---EGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 241 ~~~---~~~~~--~~~~~~~~~l~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
... ..... .....+.+++...+++.| .+||+||||||||+.+.|+.+. +||+||||||++.++..
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 210 00000 000112345666777766 6899999999999988888752 69999999999999865
Q ss_pred cCCCCceeecc------CCCHHhHHHHHHhhhCCCCCCC---CcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhcc
Q 047642 313 TDEKNFVYKLR------FLNQEESWKLFCKKAFPDTADG---QATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWWH 383 (718)
Q Consensus 313 ~~~~~~~~~l~------~L~~~es~~Lf~~~af~~~~~~---~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~~ 383 (718)
+... ..|+++ +|+.+|||+||+++......+. ...+.|..++-+|..+..+ .....+|...
T Consensus 281 l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k--~~s~eeW~~~------- 350 (1221)
T 1vt4_I 281 LSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATWDNWKHV------- 350 (1221)
T ss_dssp HHHH-SSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHS--CSSHHHHHHC-------
T ss_pred cCCC-eEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCC--CCCHHHHhcC-------
Confidence 4322 357777 9999999999998842211100 0001222233333332221 1134566542
Q ss_pred ccCCCCchHhHHHhcccCCChhh-HHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHHhhccccc
Q 047642 384 LTQDSDHVSPILALSYDELPYQL-KSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENVAEEYLKELIDRSMIQ 462 (718)
Q Consensus 384 ~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~~~~~l~~L~~rsll~ 462 (718)
....+..+|.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++|||+
T Consensus 351 ---~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp ---SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHHHHHHHHHHTSSSSS
T ss_pred ---ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------HHHHHHHHHHHHhhCCEE
Confidence 23578999999999999999 99999999999999999999999999876 235889999999999999
Q ss_pred hhhccCCcEeEEEeCHHHHHHH
Q 047642 463 IAERYLDKVKTCRIHDLIRELA 484 (718)
Q Consensus 463 ~~~~~~~~~~~~~mHdlv~d~a 484 (718)
... ...+|+|||++++++
T Consensus 419 ~d~----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 419 KQP----KESTISIPSIYLELK 436 (1221)
T ss_dssp BCS----SSSEEBCCCHHHHHH
T ss_pred EeC----CCCEEEehHHHHHHh
Confidence 842 235899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=320.70 Aligned_cols=298 Identities=20% Similarity=0.318 Sum_probs=226.9
Q ss_pred CCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-cCCC-ceEEEEEecCCCCHHHHHHHH-
Q 047642 159 GNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDV-KGGF-DCRAWVCVTQEYTTRDLLQKT- 235 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~l~~i- 235 (718)
....||||+.++++|.++|....++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 4567999999999999999865556899999999999999999999997655 7889 57999999876 344444443
Q ss_pred --HHHhcCCcccchHHhhhcCHHHHHHHHHHHhcC--ceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhh
Q 047642 236 --IKSFQKPKIEDLELMERMTEEDLELHLYEFLEG--RRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAM 311 (718)
Q Consensus 236 --~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~ 311 (718)
+..++..... ......+.+.+...++..+.+ +++||||||||+...++. .++|++||||||+..++.
T Consensus 201 ~l~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 201 NLCTRLDQDESF--SQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHCSSCCS--CSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGT
T ss_pred HHHHHhcccccc--ccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHH
Confidence 3344421110 001223556777788888866 789999999998765543 256899999999999887
Q ss_pred hcCCCCceeec---cCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc-------------cCChhHHHH
Q 047642 312 ITDEKNFVYKL---RFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR-------------EEIPHEWHT 375 (718)
Q Consensus 312 ~~~~~~~~~~l---~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~-------------~~~~~~w~~ 375 (718)
.+.. ..+++ ++|+.+|+++||...++... ....+.+.+|+++|+ ......|..
T Consensus 272 ~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~~---------~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~ 340 (591)
T 1z6t_A 272 SVMG--PKYVVPVESSLGKEKGLEILSLFVNMKK---------ADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY 340 (591)
T ss_dssp TCCS--CEEEEECCSSCCHHHHHHHHHHHHTSCG---------GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHH
T ss_pred hcCC--CceEeecCCCCCHHHHHHHHHHHhCCCc---------ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHH
Confidence 6543 34555 58999999999999987521 122346788899997 222446888
Q ss_pred HHHHhhccccC--------CCCchHhHHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHHH
Q 047642 376 VKNHLWWHLTQ--------DSDHVSPILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMENV 447 (718)
Q Consensus 376 ~~~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~~ 447 (718)
+++.+...... ....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~ 410 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEE 410 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC----------HHH
Confidence 88776543211 234688999999999999999999999999999999999999999553 345
Q ss_pred HHHHHHHHhhccccchhhccCCcEeEEEeCHHHHHHHHHhhh
Q 047642 448 AEEYLKELIDRSMIQIAERYLDKVKTCRIHDLIRELAIKKAR 489 (718)
Q Consensus 448 ~~~~l~~L~~rsll~~~~~~~~~~~~~~mHdlv~d~a~~~~~ 489 (718)
++.++++|+++||++.... +...+|+||+++|++++....
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~--~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRN--GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEE--TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHhCcCeEEecC--CCccEEEEcHHHHHHHHhhhh
Confidence 7899999999999986432 445689999999999998743
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.80 E-value=9.7e-21 Score=162.96 Aligned_cols=106 Identities=29% Similarity=0.433 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc--cCCChhHHHHHHHHHHhhhhhhhHhhhhhc
Q 047642 4 AAVLYAVQRLSDLLTQEAVFLQGVRGEVLWLQRELTRMQGFLKDTDQQ--QDTDDGVRRWVSEVRNAAYDAEDIVDTFMV 81 (718)
Q Consensus 4 ~~v~~~~~kl~~~l~~e~~~~~~~~~~i~~l~~~L~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~ld~~~~ 81 (718)
|||+++++||.+++.+|+.++.||++++++|+++|++|++||.+|+.+ +.++++++.|++++||+|||+|||||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999987 568999999999999999999999999998
Q ss_pred ccccCC------Cccccchhhhccccccccccch
Q 047642 82 QPADGG------GFWASLKKYACILNRGVNHYGV 109 (718)
Q Consensus 82 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 109 (718)
+..... |+.++++++.+.+++++.||++
T Consensus 81 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~rh~i 114 (115)
T 3qfl_A 81 QVDGIKSDDNNNKFKGLMKRTTELLKKVKHKHGI 114 (115)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcccCcccccchHHHHHHHHHHHHhhhHHhccC
Confidence 875321 2233445555555555555554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.6e-19 Score=187.36 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=119.1
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
...+++.+..+.+.. .+..+ +++|+.|.+.+|... .+|..+.++++|++|++++|.+.+ . +|..++.
T Consensus 104 ~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~--~---~p~~~~~ 172 (328)
T 4fcg_A 104 SHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-----ALPASIASLNRLRELSIRACPELT--E---LPEPLAS 172 (328)
T ss_dssp TTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCC--C---CCSCSEE
T ss_pred CCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccc-----cCcHHHhcCcCCCEEECCCCCCcc--c---cChhHhh
Confidence 356666666555553 23323 666667766666542 334556666667777777665443 4 5555443
Q ss_pred ---------cccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec-----ccCcccCCCc
Q 047642 587 ---------LIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-----PLGHLQVSTL 652 (718)
Q Consensus 587 ---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l 652 (718)
+++|++|+|++|.++.+|..++++++|++|++++|.++.+|..++++++|++|+++ ..+|..++.+
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 66777777777767667766666777777777777666666666677777777661 3455666666
Q ss_pred cccccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeC
Q 047642 653 TNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 653 ~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~ 707 (718)
++|+.|++.+|. +..|..++++++|+.|++++| .+.+|..++++++|+.+++..+
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 677777666655 556666667777777777765 5666666777777777766654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=2.5e-18 Score=179.84 Aligned_cols=197 Identities=18% Similarity=0.171 Sum_probs=169.9
Q ss_pred CCceeEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
...++.+.+..+.+..++.... +++|+.|.+.++... .+|..+..+++|++|+|++|.++ . +|..++.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~Ls~n~l~---~---lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-----ELPDTMQQFAGLETLTLARNPLR---A---LPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-----CCCSCGGGGTTCSEEEEESCCCC---C---CCGGGGG
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-----chhHHHhccCCCCEEECCCCccc---c---CcHHHhc
Confidence 3456788888777775433322 899999999998763 45677889999999999999998 6 9999999
Q ss_pred cccccEEeeccC-Ccccccccccc---------cCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCc
Q 047642 587 LIHLRYFGFKCN-SLVEFPRSIGN---------LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTL 652 (718)
Q Consensus 587 l~~L~~L~l~~~-~l~~lp~~i~~---------l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l 652 (718)
+++|++|++++| .+..+|..++. +++|++|++++|.++.+|..++++++|++|+++ ..+|..++.+
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 999999999985 45688988765 999999999999999999999999999999992 4567788999
Q ss_pred cccccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCccCC
Q 047642 653 TNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLLP 715 (718)
Q Consensus 653 ~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p 715 (718)
++|+.|++.+|. +..|..++.+++|+.|++++| ...+|..+.++++|++|+|++|+..+.+|+
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999999877 678889999999999999998 778888999999999999999999887654
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=6.9e-18 Score=175.40 Aligned_cols=198 Identities=19% Similarity=0.176 Sum_probs=138.7
Q ss_pred CCceeEEEeec-CCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 508 TSLTRRQVIPS-GNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 508 ~~~~r~l~l~~-~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
....+.+.+.. +.+....+..+ +++|+.|.+.++.... .+|..|..+++|++|++++|.+++ . +|..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~--~---~p~~~ 145 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSG--T---LPPSI 145 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEES--C---CCGGG
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCC--c---CChHH
Confidence 34566666663 55544334334 6777777777666522 345566777777777777777764 4 67777
Q ss_pred hhcccccEEeeccCCcc-cccccccccC-CCcEEEecCcccc-ccChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 585 GKLIHLRYFGFKCNSLV-EFPRSIGNLQ-CLKTMVASGNSCW-KLPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
+.+++|++|++++|.++ .+|..++++. +|++|++++|.++ .+|..+..+. |++|+++ ...|..+..+++|+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 77777777777777777 6777777776 7777777777776 6677777775 7777761 34566677888888
Q ss_pred cccceecc-ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCccCC
Q 047642 657 TLKYVNFQ-QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLLP 715 (718)
Q Consensus 657 ~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p 715 (718)
.|++..+. ...+..+..+++|+.|++++| ...+|..+.++++|+.|+|++|...+.+|+
T Consensus 225 ~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred EEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88887776 434445788888888888888 446788888899999999998877665544
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=9.8e-18 Score=174.25 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=166.4
Q ss_pred CceeEEEeecCCccc--cccccc--cccCcEeeeec-CCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh
Q 047642 509 SLTRRQVIPSGNMKY--VSLVHF--YPRLRSLLFFN-PDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS 583 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~--~~~~~~--~~~l~~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~ 583 (718)
..++.+.+..+.+.. ..+..+ +++|+.|.+.+ +... ..+|..|.++++|++|++++|.+++ . +|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~--~---~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSG--A---IPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEE--E---CCGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCC--c---CCHH
Confidence 578899999877765 344444 89999999984 6653 2456778999999999999999985 6 8999
Q ss_pred hhhcccccEEeeccCCcc-cccccccccCCCcEEEecCcccc-ccChhhcccc-ccceeee-----cccCcccCCCcccc
Q 047642 584 IGKLIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCW-KLPSQISKLH-QLRHLIA-----RPLGHLQVSTLTNL 655 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l-----~~~~p~~~~~l~~L 655 (718)
++.+++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+++++ +|++|++ ...+|..+..++ |
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 999999999999999999 78999999999999999999998 8999999998 9999998 246788888887 9
Q ss_pred ccccceecc--ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCCcc
Q 047642 656 QTLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFNTL 713 (718)
Q Consensus 656 ~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 713 (718)
+.|++..+. +..+..++.+++|+.|++++| ....++.+..+++|++|+|++|...+.+
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC
Confidence 999998887 567888999999999999999 3334445889999999999999886543
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=3.9e-17 Score=191.01 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=146.1
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
....+.+.+..+.+....+..+ +++|+.|.+.+|.... .+|..+..+++|++|++++|.+++ . +|..++
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~--~---~p~~~~ 511 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTG--E---IPKWIG 511 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCS--C---CCGGGG
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCC--c---CChHHh
Confidence 3456677777666554444444 6777777777776532 445667788888888888888875 5 788888
Q ss_pred hcccccEEeeccCCcc-cccccccccCCCcEEEecCcccc-ccChhh---------------------------------
Q 047642 586 KLIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCW-KLPSQI--------------------------------- 630 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i--------------------------------- 630 (718)
.+++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 8888888888888887 77888888888888888888765 555443
Q ss_pred -------------------------------------ccccccceeee-----cccCcccCCCccccccccceecc--cc
Q 047642 631 -------------------------------------SKLHQLRHLIA-----RPLGHLQVSTLTNLQTLKYVNFQ--QW 666 (718)
Q Consensus 631 -------------------------------------~~L~~L~~L~l-----~~~~p~~~~~l~~L~~L~~~~~~--~~ 666 (718)
+++++|+.|++ .+.+|..++.+++|+.|++..|. +.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 23456667776 24677778888888888888777 67
Q ss_pred chHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCccC
Q 047642 667 DAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLL 714 (718)
Q Consensus 667 ~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 714 (718)
.|..++++++|+.|++++| .+.+|..++++++|++|+|++|++.+.+|
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 7888888888888888888 66778888888888888888887766554
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=1.5e-16 Score=163.07 Aligned_cols=195 Identities=18% Similarity=0.184 Sum_probs=161.4
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-cccccccccc-ch
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRL-TD 582 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~-p~ 582 (718)
.+...+++.+..+.+.......+ +++|+.|.+.++.... ..+..|..+++|++|++++|. +. . + |.
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~l~---~---~~~~ 99 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR----IDAAAFTGLALLEQLDLSDNAQLR---S---VDPA 99 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSCTTCC---C---CCTT
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce----eCHhhcCCccCCCEEeCCCCCCcc---c---cCHH
Confidence 45678999999887777555444 8899999999887643 345678899999999999997 77 4 5 67
Q ss_pred hhhhcccccEEeeccCCcccc-cccccccCCCcEEEecCccccccChh-hccccccceeeec----ccCcc-cCCCcccc
Q 047642 583 SIGKLIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHL-QVSTLTNL 655 (718)
Q Consensus 583 ~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~-~~~~l~~L 655 (718)
.+..+++|++|++++|.++.+ |..+.++++|++|++++|.++.+|.. ++++++|++|+++ ..+|. .+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 899999999999999999987 45578999999999999999988865 8899999999992 23343 48889999
Q ss_pred ccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 656 QTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 656 ~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+.|++.++. ...+..|+.+++|+.|++++| ....+..+..+++|+.|+|++|....
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999998887 455788999999999999999 44445679999999999999987643
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.68 E-value=1.1e-16 Score=187.16 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=157.5
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
...+.+.+..|.+....+..+ +++|+.|.+.+|.... .+|..+..+++|+.|++++|.+++ . +|..++.
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~--~---~p~~l~~ 488 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTG--E---IPSGLSN 488 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCS--C---CCGGGGG
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccC--c---CCHHHhc
Confidence 456666676555544344434 6777778777776532 456677888889999999998886 5 8888999
Q ss_pred cccccEEeeccCCcc-cccccccccCCCcEEEecCcccc-ccChhhccccccceeeec-----ccCcc------------
Q 047642 587 LIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCW-KLPSQISKLHQLRHLIAR-----PLGHL------------ 647 (718)
Q Consensus 587 l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~-----~~~p~------------ 647 (718)
+++|++|+|++|+++ .+|..++++++|++|++++|.++ .+|..++++++|++|+++ +.+|.
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 999999999999998 78888999999999999999887 789899999999999881 33443
Q ss_pred ----------------------------------------------------------cCCCccccccccceecc--ccc
Q 047642 648 ----------------------------------------------------------QVSTLTNLQTLKYVNFQ--QWD 667 (718)
Q Consensus 648 ----------------------------------------------------------~~~~l~~L~~L~~~~~~--~~~ 667 (718)
.++.+++|+.|++..|. +..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 23445677788888777 688
Q ss_pred hHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCccC
Q 047642 668 AVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLL 714 (718)
Q Consensus 668 ~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 714 (718)
|..++++++|+.|++++| .+.+|..++++++|++|+|++|++.+.+|
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 999999999999999999 67899999999999999999999887654
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=2.2e-16 Score=163.59 Aligned_cols=197 Identities=17% Similarity=0.094 Sum_probs=146.2
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+...+++.+..+.+.......+ +++|+.|.+.++.... ....+..+..+++|++|++++|.+. . +|..+
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~---~---l~~~~ 97 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI---T---MSSNF 97 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHHHSCSCCCEEECCSCSEE---E---EEEEE
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc--ccCcccccccccccCEEECCCCccc---c---Chhhc
Confidence 34578888988777776444433 7889999998877542 1122344556888888999888887 5 77778
Q ss_pred hhcccccEEeeccCCcccccc--cccccCCCcEEEecCcccccc-Chhhccccccceeeec-----c-cCcccCCCcccc
Q 047642 585 GKLIHLRYFGFKCNSLVEFPR--SIGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR-----P-LGHLQVSTLTNL 655 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~-----~-~~p~~~~~l~~L 655 (718)
..+++|++|++++|.++.+|. .+.++++|++|++++|.+... |..+.++++|++|++. . ..|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 888888888888888888774 578888888888888887754 4457888888888872 1 357778888888
Q ss_pred ccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 656 QTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 656 ~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+.|++..+. ...+..++.+++|+.|++++| ....+..+..+++|+.|+|++|...+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 888888776 344677888888888888888 33333457778888888888887654
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=6.7e-16 Score=158.36 Aligned_cols=190 Identities=18% Similarity=0.079 Sum_probs=152.3
Q ss_pred CceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI 588 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~ 588 (718)
...+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|..+++|+.|+|++|.++ . +|.. +.++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~---~---~~~~-~~l~ 77 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYT----FSLATLMPYTRLTQLNLDRAELT---K---LQVD-GTLP 77 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSE----EEGGGGTTCTTCCEEECTTSCCC---E---EECC-SCCT
T ss_pred CCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCcCCc----cCHHHhhcCCCCCEEECCCCccC---c---ccCC-CCCC
Confidence 445667777566655 334456889999999888643 34567888999999999999998 5 5554 7899
Q ss_pred cccEEeeccCCcccccccccccCCCcEEEecCccccccCh-hhccccccceeeec----ccCcc-cCCCcccccccccee
Q 047642 589 HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIAR----PLGHL-QVSTLTNLQTLKYVN 662 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~----~~~p~-~~~~l~~L~~L~~~~ 662 (718)
+|++|++++|.++.+|..+..+++|++|++++|.++.+|. .|.++++|++|+++ ..+|. .+..+++|+.|++..
T Consensus 78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 9999999999999999989999999999999999998875 58899999999982 23444 357889999999888
Q ss_pred cc-ccc-hHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 663 FQ-QWD-AVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 663 ~~-~~~-~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
|. ... +..|..+++|+.|++++| ...+|..+..+.+|+.|+|++|...
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 87 433 345688999999999999 6678888888899999999988764
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=7.8e-16 Score=168.66 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=150.5
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-h
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-S 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~ 583 (718)
.+...+.+.+..+.+....+..+ +++|+.|.+.+|.... ..+..|.++++|+.|+|++|.++ . +|. .
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~---~---~~~~~ 142 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ----IEVGAFNGLASLNTLELFDNWLT---V---IPSGA 142 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCS---B---CCTTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC----cChhhccCcccCCEEECCCCcCC---c---cChhh
Confidence 45678899999887777655555 8899999999887643 34567888999999999999988 5 554 4
Q ss_pred hhhcccccEEeeccCCcccccc-cccccCCCcEEEecCc-cccccChh-hccccccceeeec----ccCcccCCCccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGN-SCWKLPSQ-ISKLHQLRHLIAR----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~-~i~~lp~~-i~~L~~L~~L~l~----~~~p~~~~~l~~L~ 656 (718)
++.+++|++|+|++|.++.+|. .+.++++|+.|++++| .+..+|.. +.++++|++|+++ ..+ +.+..+++|+
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~ 221 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLE 221 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCC
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cccccccccc
Confidence 7889999999999999998876 4678889999999884 67777764 7888889988882 222 3567778888
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.|++.+|. ...+..|.++++|+.|++++| ....+..+.++++|+.|+|++|++.
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 88887777 455778888888888888888 4444667888888888888887664
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=162.30 Aligned_cols=194 Identities=17% Similarity=0.172 Sum_probs=151.9
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh-
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS- 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~- 583 (718)
.+...+.+.+..+.+.......+ +++|+.|.+.++.... ..+..|.++++|++|++++|.++ . +|..
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~---~---~~~~~ 119 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLS---N---LSSSW 119 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCS---S---CCHHH
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCC---c---CCHhH
Confidence 34578999999887777555444 8999999999887643 34567889999999999999998 5 7765
Q ss_pred hhhcccccEEeeccCCcccccc--cccccCCCcEEEecCc-cccccC-hhhccccccceeeec-----ccCcccCCCccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPR--SIGNLQCLKTMVASGN-SCWKLP-SQISKLHQLRHLIAR-----PLGHLQVSTLTN 654 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~-~i~~lp-~~i~~L~~L~~L~l~-----~~~p~~~~~l~~ 654 (718)
++.+++|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..++++++|++|+++ ...|..+..+++
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 199 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcccc
Confidence 8999999999999999999997 6889999999999998 577774 568999999999982 334777888899
Q ss_pred cccccceecc-ccchHH-hcccCCCCeEEEeec--cc-------------------------------cHHHHhhccCCC
Q 047642 655 LQTLKYVNFQ-QWDAVD-ARNLINLQELEIREI--PY-------------------------------TNMNFILQVNSL 699 (718)
Q Consensus 655 L~~L~~~~~~-~~~~~~-l~~l~~L~~L~l~~~--~~-------------------------------~~~~~l~~l~~L 699 (718)
|++|++..+. ...+.. +..+++|+.|++++| .. .+|..+.++++|
T Consensus 200 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred CCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 9998888776 333333 345777777777776 11 356677778888
Q ss_pred CeEEEeeCCCC
Q 047642 700 RSLTLQTDTAF 710 (718)
Q Consensus 700 ~~L~l~~~~~~ 710 (718)
++|+|++|...
T Consensus 280 ~~L~Ls~N~l~ 290 (353)
T 2z80_A 280 LELEFSRNQLK 290 (353)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 88888887654
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=1.3e-15 Score=155.99 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=152.6
Q ss_pred EEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccE
Q 047642 513 RQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRY 592 (718)
Q Consensus 513 ~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~ 592 (718)
.+....+.+.. .+..+.++++.|.+.++.... ..+..|..+++|+.|++++|.+++ - .|..++.+++|++
T Consensus 15 ~~~c~~~~l~~-ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~--~---~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVGIPAASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLAR--I---DAAAFTGLALLEQ 84 (285)
T ss_dssp EEECCSSCCSS-CCTTCCTTCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCE--E---CTTTTTTCTTCCE
T ss_pred EEEcCcCCccc-CCcCCCCCceEEEeeCCcCCc----cCHHHcccCCCCCEEECCCCccce--e---CHhhcCCccCCCE
Confidence 34444344444 334457899999999988643 345678899999999999999983 2 4788999999999
Q ss_pred EeeccCC-cccc-cccccccCCCcEEEecCcccccc-Chhhccccccceeeec----ccCc-ccCCCccccccccceecc
Q 047642 593 FGFKCNS-LVEF-PRSIGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR----PLGH-LQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 593 L~l~~~~-l~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~L~~~~~~ 664 (718)
|++++|. +..+ |..+.++++|++|++++|.++.+ |..+.++++|++|+++ ..+| ..+..+++|+.|++.++.
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 9999997 8888 66789999999999999999987 5568999999999992 2333 347889999999999887
Q ss_pred -cc-chHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 665 -QW-DAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 665 -~~-~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.. .+..+..+++|+.|++++| ....|..+.++++|+.|+|++|...+
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 33 3446899999999999999 45558889999999999999987754
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=166.72 Aligned_cols=193 Identities=16% Similarity=0.168 Sum_probs=139.3
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-h
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-S 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~ 583 (718)
.+...+.+.+..+.+.......+ +++|+.|.+.+|.... ..+..|.++++|+.|+|++|.++ . +|. .
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~---~---~~~~~ 131 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGLANLNTLELFDNRLT---T---IPNGA 131 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTCSSCCEEECCSSCCS---S---CCTTT
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCCccCCEEECCCCcCC---e---eCHhH
Confidence 44567888888777776555555 7888888888887633 34467788888899999888888 5 554 5
Q ss_pred hhhcccccEEeeccCCcccccc-cccccCCCcEEEecCc-cccccCh-hhccccccceeeec----ccCcccCCCccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGN-SCWKLPS-QISKLHQLRHLIAR----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~-~i~~lp~-~i~~L~~L~~L~l~----~~~p~~~~~l~~L~ 656 (718)
+..+++|++|+|++|.++.+|. .+.++++|++|++++| .+..+|. .|.++++|++|+++ ..+| .+..+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccC
Confidence 7888888888888888888776 4677888888888874 5666665 47778888888772 2223 466677777
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.|++.+|. ...+..|..+++|+.|++++| ....+..+.++++|+.|+|++|++.
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 77777666 344667777777777777777 3344556777777777777777654
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.3e-15 Score=152.86 Aligned_cols=189 Identities=19% Similarity=0.146 Sum_probs=134.9
Q ss_pred eeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh-hhhccc
Q 047642 511 TRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS-IGKLIH 589 (718)
Q Consensus 511 ~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~-i~~l~~ 589 (718)
.+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|..+++|++|++++|.++ . +|.. +..+++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~---~---i~~~~~~~l~~ 86 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSS----LPSKAFHRLTKLRLLYLNDNKLQ---T---LPAGIFKELKN 86 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSC----CCTTSSSSCTTCCEEECCSSCCS---C---CCTTTTSSCTT
T ss_pred CCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCe----eCHHHhcCCCCCCEEECCCCccC---e---eChhhhcCCCC
Confidence 3455666555554 333446678888888776532 33456778888888888888887 5 6654 477888
Q ss_pred ccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeec----ccCccc-CCCcccccccccee
Q 047642 590 LRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHLQ-VSTLTNLQTLKYVN 662 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~~-~~~l~~L~~L~~~~ 662 (718)
|++|++++|.++.+|.. +.++++|++|++++|.++.+|.. ++++++|++|+++ ..+|.. +..+++|+.|++.+
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 88888888888888765 47788888888888888877654 6788888888882 233433 67788888888877
Q ss_pred cc--ccchHHhcccCCCCeEEEeec-cccHH-HHhhccCCCCeEEEeeCCCC
Q 047642 663 FQ--QWDAVDARNLINLQELEIREI-PYTNM-NFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 663 ~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~ 710 (718)
+. ...+..|..+++|+.|++++| ...+| ..+..+++|+.|+|++|...
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 76 334445788888888888888 33333 35777888888888887654
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=7.7e-16 Score=159.49 Aligned_cols=190 Identities=15% Similarity=0.082 Sum_probs=155.0
Q ss_pred EEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEE
Q 047642 514 QVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYF 593 (718)
Q Consensus 514 l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L 593 (718)
+....+.+.. .+..+.++++.|.+.++.... .++..|.++++|+.|++++|.++ .+...|..+..+++|++|
T Consensus 12 l~c~~~~l~~-ip~~~~~~l~~L~L~~n~l~~----i~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 12 IRCNSKGLTS-VPTGIPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp EECCSSCCSS-CCSCCCTTCCEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC---EEEEEEHHHHSCSCCCEE
T ss_pred EEcCCCCccc-CCCCCCCCCCEEECCCCccCc----cCHhHhhccccCCEEECCCCccC---cccCcccccccccccCEE
Confidence 3344333443 333446899999999887632 34456889999999999999988 321247888899999999
Q ss_pred eeccCCcccccccccccCCCcEEEecCccccccCh--hhccccccceeeec-----ccCcccCCCccccccccceecc-c
Q 047642 594 GFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS--QISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ-Q 665 (718)
Q Consensus 594 ~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~-~ 665 (718)
++++|.+..+|..+.++++|++|++++|.++.+|. .+.++++|++|+++ ...|..+..+++|+.|++..+. .
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 99999999999999999999999999999998875 68999999999992 3455668889999999998887 2
Q ss_pred --cchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 666 --WDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 666 --~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
..|..++.+++|+.|++++| ....|..+.++++|++|+|++|...+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 46788999999999999999 44447789999999999999988654
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=9.7e-16 Score=156.19 Aligned_cols=198 Identities=19% Similarity=0.178 Sum_probs=154.0
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+...+.+.+..+.+.......+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+++ - .|..+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~ 96 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQS--L---ALGAF 96 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCE--E---CTTTT
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc----cCHHHccCCcCCCEEECCCCccCc--c---Chhhh
Confidence 45578999999887776554444 8999999999887643 344578899999999999999983 2 44678
Q ss_pred hhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccc--cChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 585 GKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWK--LPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
..+++|++|++++|.+..++. .++++++|++|++++|.++. +|..++++++|++|+++ ...+..+..+.+|+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 999999999999999998876 58899999999999999986 78899999999999993 22234566666776
Q ss_pred ----cccceecc-ccchHHhcccCCCCeEEEeec-cccHH-HHhhccCCCCeEEEeeCCCCCcc
Q 047642 657 ----TLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNM-NFILQVNSLRSLTLQTDTAFNTL 713 (718)
Q Consensus 657 ----~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 713 (718)
.|++..+. ...+.......+|+.|++++| ...+| ..+.++++|+.|+|++|......
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 55666665 444444445558999999999 44444 44688999999999998876543
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=2e-15 Score=153.52 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=79.3
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhhcc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLI 588 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~ 588 (718)
..+.+.+..+.+.....-..+++|+.|.+.++.... + ..+..+++|++|++++|.++ . +| ..++.++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~l~---~---~~~~~~~~l~ 109 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-----I-SALKELTNLTYLILTGNQLQ---S---LPNGVFDKLT 109 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-----C-GGGTTCTTCCEEECTTSCCC---C---CCTTTTTTCT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-----c-hhhcCCCCCCEEECCCCccC---c---cChhHhcCCc
Confidence 344555554333322111115555555555554322 1 23445555555555555555 2 33 2345555
Q ss_pred cccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeec----ccCc-ccCCCccccccccce
Q 047642 589 HLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGH-LQVSTLTNLQTLKYV 661 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~L~~~ 661 (718)
+|++|++++|.++.+|+. ++++++|++|++++|.++.+|.. ++++++|++|+++ ..+| ..++.+++|+.|++.
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 555555555555555443 35555555555555555555443 3555555555551 1122 223445555555555
Q ss_pred ecc--ccchHHhcccCCCCeEEEeec
Q 047642 662 NFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 662 ~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
.|. +..+..++.+++|+.|++++|
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCC
Confidence 444 223333455555555555554
No 23
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=4.3e-15 Score=160.75 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=175.1
Q ss_pred CCceeeccccHHHHHHHH-hcC--C--CCcEEEEE--EecCCchHHHHHHHHhcCcccc---CCCc-eEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQL-LKD--E--QQRFVISI--LGMGGLGKTTLARKLVNSTDVK---GGFD-CRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 228 (718)
+..++||+++++++.++| ... . .....+.| +|++|+||||||+.+++..... ..|. ..+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 421 1 23456666 9999999999999999853211 1122 3567777677788
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCCh--------hhhhHHHhhCCCC---C
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHK--------SAWESLRRAFPDN---G 295 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~--------~~~~~l~~~l~~~---~ 295 (718)
..++..++.+++..... ...+..++...+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 101 ~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-----RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-----TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred HHHHHHHHHHhCCCCCC-----CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 89999999998654221 12234555666666664 67999999999763 2333333332211 2
Q ss_pred --CCcEEEEEecchhhhhhc--------CCCCceeeccCCCHHhHHHHHHhh---hCCCCCCCCcCCCCchHHHHHHHHH
Q 047642 296 --NGSRIVITTRNEPVAMIT--------DEKNFVYKLRFLNQEESWKLFCKK---AFPDTADGQATVCSPGLEKLGREMV 362 (718)
Q Consensus 296 --~gsriivTTR~~~v~~~~--------~~~~~~~~l~~L~~~es~~Lf~~~---af~~~~~~~~~~~~~~l~~~~~~I~ 362 (718)
....+|+||+...+.... ......+.+++++.++.+++|... ++.... .+ .+....|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~------~~---~~~~~~i~ 246 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV------WE---PRHLELIS 246 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS------CC---HHHHHHHH
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC------CC---hHHHHHHH
Confidence 345588888866543211 111133899999999999999755 333211 12 34556667
Q ss_pred HHhcc-----CChhHHHHHHHHhhc-----cccC-CCCch---------HhHHHhcccCCChhhHHHHhhccCCC--CCC
Q 047642 363 EKCRE-----EIPHEWHTVKNHLWW-----HLTQ-DSDHV---------SPILALSYDELPYQLKSCFLYLSLFP--EDS 420 (718)
Q Consensus 363 ~~c~~-----~~~~~w~~~~~~~~~-----~~~~-~~~~i---------~~~l~~sy~~L~~~~k~cfl~la~Fp--~~~ 420 (718)
+.|++ ..+.....++..... .... ....+ ...+.-++..||++.+.++..+|.+. .+.
T Consensus 247 ~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 247 DVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp HHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 77752 344333333332110 0000 01111 22344566889999999999998754 233
Q ss_pred eecHHHHHHHHHHc--CCcCCCCCCHHHHHHHHHHHHhhccccchhhccCCcEeEEEeC
Q 047642 421 LIDTEKLIRLWIAE--GFIPEEEQDMENVAEEYLKELIDRSMIQIAERYLDKVKTCRIH 477 (718)
Q Consensus 421 ~i~~~~li~~W~a~--g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~mH 477 (718)
.+....+...|... ........+ ......++++|.+.++|.......++...|++|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~ 384 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRG-YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLF 384 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCC-HHHHHHHHHHHHHTTSEEEECC-------CCEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhCCCEEeecccCCCCCceeEE
Confidence 45555555444211 111111111 344678899999999998754322233344444
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2e-15 Score=171.37 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=45.5
Q ss_pred hccccccceeeec-----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeE
Q 047642 630 ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSL 702 (718)
Q Consensus 630 i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L 702 (718)
++++++|++|+++ ...|..++.+++|+.|++.+|. ...+..++.+++|+.|++++| ...+|..+..+++|+.|
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 4445555555551 2234445555566666555554 333444455666666666666 44566666666777777
Q ss_pred EEeeCCCC
Q 047642 703 TLQTDTAF 710 (718)
Q Consensus 703 ~l~~~~~~ 710 (718)
+|++|...
T Consensus 330 ~L~~N~l~ 337 (597)
T 3oja_B 330 YLDHNSIV 337 (597)
T ss_dssp ECCSSCCC
T ss_pred ECCCCCCC
Confidence 77766653
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=6e-15 Score=154.63 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=136.3
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
+...+.+.+..+.+....+..+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++ . +|..+.
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~---~---l~~~~~ 122 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLV---E---IPPNLP 122 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCC---S---CCSSCC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCC---c---cCcccc
Confidence 3467788888776666544444 7888888888776532 34566778888888888888877 5 666554
Q ss_pred hcccccEEeeccCCccccccc-ccccCCCcEEEecCccccc---cChhhccc--------------------cccceeee
Q 047642 586 KLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWK---LPSQISKL--------------------HQLRHLIA 641 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~---lp~~i~~L--------------------~~L~~L~l 641 (718)
++|++|++++|.++.+|.. +.++++|++|++++|.++. .|..+..+ ++|++|++
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEEC
Confidence 6777777777777777654 5677777777777776642 23344444 34555554
Q ss_pred c-----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 642 R-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 642 ~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+ ...|..+..+++|+.|++.++. ...+..++.+++|+.|++++| ...+|..+..+++|+.|++++|...+
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence 1 2223567788888888888887 444557889999999999998 66788889999999999999987643
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=6.3e-15 Score=152.57 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=148.6
Q ss_pred CceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI 588 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~ 588 (718)
...+.+.+..+.+.....-..+++|+.|.+.++.... ++. +..+++|+.|++++|.++ . +| .++.++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-----~~~-~~~l~~L~~L~L~~n~l~---~---~~-~~~~l~ 107 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-----LAP-LKNLTKITELELSGNPLK---N---VS-AIAGLQ 107 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCCSCCEEECCSCCCS---C---CG-GGTTCT
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-----Chh-HccCCCCCEEEccCCcCC---C---ch-hhcCCC
Confidence 4577888886666553321228999999999887643 233 889999999999999998 5 54 689999
Q ss_pred cccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc
Q 047642 589 HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~ 664 (718)
+|++|++++|.++.+|. +.++++|++|++++|.++.+|. ++++++|++|+++ ..++. +..+++|+.|++..+.
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 99999999999999885 8999999999999999998887 8999999999982 22333 7888999999988887
Q ss_pred ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 665 QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 665 ~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
-.....+..+++|+.|++++| ...++ .+..+++|+.|+|++|...+
T Consensus 185 l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 222234899999999999999 44444 48999999999999987643
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=158.54 Aligned_cols=186 Identities=18% Similarity=0.133 Sum_probs=152.8
Q ss_pred eecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEee
Q 047642 516 IPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGF 595 (718)
Q Consensus 516 l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l 595 (718)
...+.+.. .+..+.++++.|.+.++.... ..+..|.++++|+.|++++|.+++ - .|..++.+++|++|++
T Consensus 38 ~~~~~l~~-iP~~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 38 GSSGSLNS-IPSGLTEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINT--I---EEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CCSTTCSS-CCTTCCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCE--E---CTTTTTTCTTCCEEEC
T ss_pred CCCCCccc-ccccccccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCc--c---CHhhcCCCCCCCEEEC
Confidence 33344444 344457799999999988643 344578999999999999999983 2 4567999999999999
Q ss_pred ccCCccccccc-ccccCCCcEEEecCccccccCh--hhccccccceeeecc-----c-CcccCCCccccccccceecc--
Q 047642 596 KCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPS--QISKLHQLRHLIARP-----L-GHLQVSTLTNLQTLKYVNFQ-- 664 (718)
Q Consensus 596 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~-----~-~p~~~~~l~~L~~L~~~~~~-- 664 (718)
++|.++.+|.. ++++++|++|++++|.++.+|. .++++++|++|+++. . .|..+..+++|+.|++..+.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 99999999987 7899999999999999999997 689999999999821 2 24568899999999999887
Q ss_pred ccchHHhcccCCCCeEEEeec-cccHHHH-hhccCCCCeEEEeeCCCCC
Q 047642 665 QWDAVDARNLINLQELEIREI-PYTNMNF-ILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 665 ~~~~~~l~~l~~L~~L~l~~~-~~~~~~~-l~~l~~L~~L~l~~~~~~~ 711 (718)
+..+..++.+++|+.|++++| ...+|.. +..+++|+.|++++|...+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 556888999999999999999 5555554 4568999999999988754
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=6.4e-15 Score=162.64 Aligned_cols=193 Identities=20% Similarity=0.165 Sum_probs=114.0
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SI 584 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i 584 (718)
+...+.+.+..+.+....+..+ +++|+.|.+.++.... ..+..|.++++|+.|+|++|.++ . +|. .+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~---~---~~~~~~ 100 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLK---L---IPLGVF 100 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCC---S---CCTTSS
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCC---c---cCcccc
Confidence 4456666666665555444334 6666666666665422 23455666666777777766666 4 443 35
Q ss_pred hhcccccEEeeccCCcccc-cccccccCCCcEEEecCccccccC-hhhccccccceeeec----ccCc-ccCCCcccccc
Q 047642 585 GKLIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKLP-SQISKLHQLRHLIAR----PLGH-LQVSTLTNLQT 657 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~ 657 (718)
+.+++|++|+|++|.+..+ |..+.++++|++|++++|.+..++ ..|.++++|++|++. ..+| ..+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 6666677777776666654 334566666777777666666543 346666667666662 1122 23556666666
Q ss_pred ccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 658 LKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 658 L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
|++..+. ...+..|..+++|+.|++++| ...++..+....+|++|+|++|+..
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 6666655 333445666667777777665 4444444445557777777776553
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=5.5e-15 Score=154.79 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=115.2
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch---
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD--- 582 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~--- 582 (718)
+...+.+.+..+.+.......+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++ . +|.
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~---~---l~~~~~ 120 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLK---E---LPEKMP 120 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCS---B---CCSSCC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCC---c---cChhhc
Confidence 3456667776665555443333 6667777776665432 23455666666666666666655 3 443
Q ss_pred -------------------hhhhcccccEEeeccCCcc---cccccccccCCCcEEEecCccccccChhhccccccceee
Q 047642 583 -------------------SIGKLIHLRYFGFKCNSLV---EFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLI 640 (718)
Q Consensus 583 -------------------~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 640 (718)
.++.+++|++|++++|.+. ..|..+.++++|++|++++|.++.+|..+. ++|++|+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 3445555555555555543 223344555555555555555555555443 4566665
Q ss_pred ec-----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 641 AR-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 641 l~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
++ ...|..+..+++|+.|++..+. ...+..+..+++|+.|++++| ...+|..+..+++|++|+|++|...
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 51 2234556777777777777776 334456777888888888887 5567777788888888888887654
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=2.2e-15 Score=171.03 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=70.9
Q ss_pred ceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 510 LTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
..+.+.+..+.+..++...+ +++|+.|.+.++.... .++..|..+++|++|+|++|.+++ - .|..++.+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRY--L---PPHVFQNV 122 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCC--C---CTTTTTTC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCC--C---CHHHHcCC
Confidence 44555565444444332222 5666666666665422 233456666666666666666662 1 23345666
Q ss_pred ccccEEeeccCCcccccccc-cccCCCcEEEecCccccccCh-hhccccccceeee
Q 047642 588 IHLRYFGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIA 641 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 641 (718)
++|++|+|++|.++.+|+.+ +++++|++|++++|.++.+|+ .|+++++|++|++
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence 66666666666666666553 566666666666666665543 3666666666665
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=3e-15 Score=160.69 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=77.2
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
...+.+.+..+.+..++...+ +++|+.|.+.++.... ..+..|..+++|+.|++++|.+++ - .|..++.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRY--L---PPHVFQN 115 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCC--C---CTTTTTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCCCCc--C---CHHHhcC
Confidence 456667777555444333222 6677777777665422 233456667777777777777662 1 3345667
Q ss_pred cccccEEeeccCCcccccccc-cccCCCcEEEecCccccccCh-hhccccccceeee
Q 047642 587 LIHLRYFGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIA 641 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l 641 (718)
+++|++|++++|.++.+|..+ .++++|++|++++|.++.+|. .++++++|++|++
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 777777777777777776653 667777777777776666543 3666667776666
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=4.1e-15 Score=159.66 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=46.5
Q ss_pred hccccccceeeec-----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeE
Q 047642 630 ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSL 702 (718)
Q Consensus 630 i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L 702 (718)
++++++|++|+++ ...|..+..+++|+.|++.++. ...+..+..+++|+.|++++| ...+|..+..+++|+.|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 4445555555551 2234455566666666666555 333444455666666666666 44556666666777777
Q ss_pred EEeeCCCC
Q 047642 703 TLQTDTAF 710 (718)
Q Consensus 703 ~l~~~~~~ 710 (718)
+|++|...
T Consensus 324 ~L~~N~i~ 331 (390)
T 3o6n_A 324 YLDHNSIV 331 (390)
T ss_dssp ECCSSCCC
T ss_pred ECCCCccc
Confidence 77776553
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=162.79 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=159.5
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DS 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~ 583 (718)
...+.+.|.+..+.+.......+ +++|+.|.+.+|.... ..+..|..+++|+.|+|++|.++ . +| ..
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~i~---~---~~~~~ 155 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT----IPNGAFVYLSKLKELWLRNNPIE---S---IPSYA 155 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS----CCTTTSCSCSSCCEEECCSCCCC---E---ECTTT
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe----eCHhHhhccccCceeeCCCCccc---c---cCHHH
Confidence 45678999999887777555555 8999999999987642 34567899999999999999998 5 55 47
Q ss_pred hhhcccccEEeecc-CCcccccc-cccccCCCcEEEecCccccccChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 584 IGKLIHLRYFGFKC-NSLVEFPR-SIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
+..+++|++|+|++ +.+..+|. .+.++++|++|++++|.++.+|. +..+++|++|+++ ...|..+..+++|+
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCC
Confidence 89999999999997 67788876 47899999999999999999984 8899999999992 33467789999999
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCC
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
.|.+.++. ...+..|.++++|+.|++++| ....+..+..+++|+.|+|++|..
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99998887 456678899999999999999 333345678899999999999864
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=5.4e-15 Score=161.95 Aligned_cols=192 Identities=17% Similarity=0.134 Sum_probs=160.4
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DS 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~ 583 (718)
...+.+.|.+..|.+....+..+ +++|+.|.+.+|.... .++..|..+++|+.|+|++|.++ . +| ..
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~---~---~~~~~ 166 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV----IPSGAFEYLSKLRELWLRNNPIE---S---IPSYA 166 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB----CCTTTSSSCTTCCEEECCSCCCC---E---ECTTT
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc----cChhhhcccCCCCEEECCCCCcc---e---eCHhH
Confidence 45678999999888777655555 8999999999988643 44567889999999999999998 5 55 47
Q ss_pred hhhcccccEEeecc-CCccccccc-ccccCCCcEEEecCccccccChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 584 IGKLIHLRYFGFKC-NSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
+..+++|++|++++ +.+..+|.. +.++++|++|++++|.++.+| .+..+++|++|+++ ...|..+..+++|+
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCC
Confidence 89999999999997 778888874 789999999999999999998 48899999999992 33467789999999
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec-cccH-HHHhhccCCCCeEEEeeCCC
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTN-MNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~l~~l~~L~~L~l~~~~~ 709 (718)
.|.+.++. ...+..|..+++|+.|++++| ...+ +..+..+++|+.|+|++|..
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99998887 456778999999999999999 3333 45578899999999999864
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=1.2e-15 Score=174.22 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=129.8
Q ss_pred CCCceeEEEeecCCcccc-----------------cccc----ccccCcEeeeecCCccchhhhhhhhhccCCceEEEEE
Q 047642 507 STSLTRRQVIPSGNMKYV-----------------SLVH----FYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLD 565 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~-----------------~~~~----~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 565 (718)
.....+.+.+..+.+... .+.. .+++|+.|.+.+|... ..+|..+.++++|++|+
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL----TKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC----SSCCTTTTTCSSCCEEE
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC----ccChHHHhcCCCCCEEE
Confidence 345667777776665551 2222 2567777777776642 24456677777777777
Q ss_pred ecCCc-ccccccccccchhhhhc------ccccEEeeccCCcccccc--cccccCCCcEEEecCcccc-ccChhhccccc
Q 047642 566 LEDTR-IEHSGKVLRLTDSIGKL------IHLRYFGFKCNSLVEFPR--SIGNLQCLKTMVASGNSCW-KLPSQISKLHQ 635 (718)
Q Consensus 566 l~~~~-l~~~~~l~~~p~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~ 635 (718)
+++|. +++ .. +|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.++ .+| .++++++
T Consensus 280 Ls~n~~l~~-~~---lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 280 VACNRGISG-EQ---LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp CTTCTTSCH-HH---HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred CcCCCCCcc-cc---chHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 77776 652 02 66667666 777777777777777777 6777777777777777777 777 7777777
Q ss_pred cceeeec----ccCcccCCCccc-cccccceecc-ccchHHhcccC--CCCeEEEeec--cccHHHHhh-------ccCC
Q 047642 636 LRHLIAR----PLGHLQVSTLTN-LQTLKYVNFQ-QWDAVDARNLI--NLQELEIREI--PYTNMNFIL-------QVNS 698 (718)
Q Consensus 636 L~~L~l~----~~~p~~~~~l~~-L~~L~~~~~~-~~~~~~l~~l~--~L~~L~l~~~--~~~~~~~l~-------~l~~ 698 (718)
|++|+++ ..+|..+..+++ |+.|++..+. ...|..++.++ +|+.|++++| ....|..+. .+.+
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 7777771 356666777777 7777777666 55555555544 6777777777 444555566 6667
Q ss_pred CCeEEEeeCCCC
Q 047642 699 LRSLTLQTDTAF 710 (718)
Q Consensus 699 L~~L~l~~~~~~ 710 (718)
|++|+|++|...
T Consensus 435 L~~L~Ls~N~l~ 446 (636)
T 4eco_A 435 VSSINLSNNQIS 446 (636)
T ss_dssp EEEEECCSSCCC
T ss_pred CCEEECcCCccC
Confidence 778888777664
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.6e-15 Score=174.93 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=85.6
Q ss_pred CCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCC-ccc--ccccccccC-------CCcEEEecCcccccc
Q 047642 557 SLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNS-LVE--FPRSIGNLQ-------CLKTMVASGNSCWKL 626 (718)
Q Consensus 557 ~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~i~~l 626 (718)
++++|+.|+|++|.+.+ . +|..++++++|++|+|++|+ ++. +|..++++. +|++|++++|.++.+
T Consensus 489 ~L~~L~~L~Ls~N~l~~--~---iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT--Q---LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563 (876)
T ss_dssp GCTTCCEEEEESCTTCC--S---CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC
T ss_pred cCCCCCEEECcCCCCCc--c---ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc
Confidence 66666666666666554 4 56666666666666666665 553 565555544 666666666666666
Q ss_pred Ch--hhccccccceeeec----ccCcccCCCccccccccceecc-ccchHHhcccCC-CCeEEEeec-cccHHHHhhccC
Q 047642 627 PS--QISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLIN-LQELEIREI-PYTNMNFILQVN 697 (718)
Q Consensus 627 p~--~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~-L~~L~l~~~-~~~~~~~l~~l~ 697 (718)
|. .++++++|++|+++ ..+| .++.+++|+.|++..|. ...|..+..+++ |+.|++++| ...+|..+..++
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~ 642 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence 66 56666666666651 2344 55556666666665555 445555666665 666666666 334454444443
Q ss_pred C--CCeEEEeeCCCCC
Q 047642 698 S--LRSLTLQTDTAFN 711 (718)
Q Consensus 698 ~--L~~L~l~~~~~~~ 711 (718)
. |+.|+|++|...+
T Consensus 643 ~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SSCEEEEECCSSCTTT
T ss_pred cCCCCEEECcCCcCCC
Confidence 2 5556665555544
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=1.3e-14 Score=152.08 Aligned_cols=189 Identities=18% Similarity=0.143 Sum_probs=146.3
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
..+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|.++++|++|++++|.+++ - .|..++.+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISK--I---HEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCE--E---CGGGSTTCTT
T ss_pred cCCEEECCCCCccc-cCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCc--c---CHhHhhCcCC
Confidence 35666776555554 344457899999999987643 345678999999999999999983 2 4788999999
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccChh-hccccccceeeec-c------cCcccCCCc---------
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-P------LGHLQVSTL--------- 652 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-~------~~p~~~~~l--------- 652 (718)
|++|++++|.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++. . ..|..+..+
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~ 181 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCS
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcC
Confidence 9999999999999998876 8999999999999999875 8999999999982 1 223334433
Q ss_pred -----------cccccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 653 -----------TNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 653 -----------~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
++|+.|++..+. ...+..+..+++|+.|++++| ....+..+..+++|+.|+|++|...
T Consensus 182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 345555555554 334467888999999999988 3444457889999999999998765
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=8.3e-15 Score=160.70 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+...+++.+..+.+....+..+ +++|+.|.+.++.... ...+..|..+++|++|+|++|.+++ . .|..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~---~i~~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL---VIRNNTFRGLSSLIILKLDYNQFLQ--L---ETGAF 99 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC---EECTTTTTTCTTCCEEECTTCTTCE--E---CTTTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc---eECcccccccccCCEEeCCCCccCc--c---Chhhc
Confidence 34567777777666665444444 6777777777665421 1224456666777777777776662 2 35566
Q ss_pred hhcccccEEeeccCCccc-cccc--ccccCCCcEEEecCcccccc-Chh-hccccccceeee
Q 047642 585 GKLIHLRYFGFKCNSLVE-FPRS--IGNLQCLKTMVASGNSCWKL-PSQ-ISKLHQLRHLIA 641 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~i~~l-p~~-i~~L~~L~~L~l 641 (718)
+.+++|++|+|++|.++. +|.. +.++++|++|++++|.++.+ |.. ++++++|++|++
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 666666666666666653 3333 56666666666666666654 333 556666666655
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=1e-14 Score=151.05 Aligned_cols=164 Identities=21% Similarity=0.207 Sum_probs=138.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... ++ .+..+++|++|++++|.++ . +|. ++.+++|++|++++|.++.+| .+.+
T Consensus 40 l~~L~~L~l~~~~i~~-----l~-~~~~l~~L~~L~L~~n~i~---~---~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-----IE-GVQYLNNLIGLELKDNQIT---D---LAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHTCCEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCC---C---CGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred cCCcCEEEeeCCCccC-----ch-hhhccCCCCEEEccCCcCC---C---Chh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 7889999999887533 33 4778999999999999998 5 776 999999999999999999987 6899
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEee
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIRE 684 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~ 684 (718)
+++|++|++++|.++.+|. +..+++|++|+++ ..++. ++.+++|+.|++..+. ...+. +..+++|+.|++++
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 9999999999999999886 9999999999993 22232 7888999999998887 33333 99999999999999
Q ss_pred c-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 685 I-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 685 ~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
| ...++. +..+++|++|+|++|...+
T Consensus 183 n~l~~~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 183 NKISDISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECTTSCCCB
T ss_pred CccCcChh-hcCCCCCCEEEccCCccCc
Confidence 9 334443 8999999999999988754
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=6.2e-15 Score=149.79 Aligned_cols=172 Identities=22% Similarity=0.213 Sum_probs=137.9
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccc-cc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS-IG 608 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~ 608 (718)
+++++.|.+.++.... + ..+..+++|++|++++|.++ . ++ .++.+++|++|++++|.++.+|+. +.
T Consensus 40 l~~L~~L~l~~~~i~~-----~-~~l~~l~~L~~L~l~~n~l~---~---~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-----V-QGIQYLPNVRYLALGGNKLH---D---IS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp HTTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECTTSCCC---C---CG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccceeeeeeCCCCccc-----c-cccccCCCCcEEECCCCCCC---C---ch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 7888999988876532 2 34678899999999999988 4 54 788999999999999999988876 58
Q ss_pred ccCCCcEEEecCccccccChh-hccccccceeeec----ccCcc-cCCCccccccccceecc--ccchHHhcccCCCCeE
Q 047642 609 NLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHL-QVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQEL 680 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~-~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L 680 (718)
++++|++|++++|.++.+|.. ++++++|++|++. ..+|. .++.+++|+.|++..+. ...+..++.+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 899999999999999988776 7889999999982 23333 36788999999998887 4445557899999999
Q ss_pred EEeec--cccHHHHhhccCCCCeEEEeeCCCCCccC
Q 047642 681 EIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLL 714 (718)
Q Consensus 681 ~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 714 (718)
++++| ....+..+.++++|+.|+|++|...+..+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 99998 44444557889999999999988766543
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=4.9e-15 Score=169.26 Aligned_cols=193 Identities=10% Similarity=0.083 Sum_probs=116.4
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCC-ccchhhhhhhhhccCC------ceEEEEEecCCccccccccc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPD-RESINIKHLQTLCSSL------RFLRVLDLEDTRIEHSGKVL 578 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~-~~~~~~~~~~~~~~~l------~~L~~L~l~~~~l~~~~~l~ 578 (718)
....+++.+..+.+....+..+ +++|+.|.+.++. ... ..+|..+..+ ++|++|++++|.++ .
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---~-- 319 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLK---T-- 319 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCS---S--
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCC---c--
Confidence 3456777777666555444444 7777777777775 421 0233333333 67777777777776 4
Q ss_pred ccch--hhhhcccccEEeeccCCcc-cccccccccCCCcEEEecCccccccChhhccccc-cceeeec----ccCcccCC
Q 047642 579 RLTD--SIGKLIHLRYFGFKCNSLV-EFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQ-LRHLIAR----PLGHLQVS 650 (718)
Q Consensus 579 ~~p~--~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~-L~~L~l~----~~~p~~~~ 650 (718)
+|. .++.+++|++|++++|.++ .+| .++++++|++|++++|.++.+|..++++++ |++|+++ ..+|..++
T Consensus 320 -ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 320 -FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp -CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred -cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 676 6777777777777777777 677 667777777777777777777777777776 7777661 24455444
Q ss_pred Ccc--ccccccceecc--ccchHHhc-------ccCCCCeEEEeec-cccHHHHh-hccCCCCeEEEeeCCCC
Q 047642 651 TLT--NLQTLKYVNFQ--QWDAVDAR-------NLINLQELEIREI-PYTNMNFI-LQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 651 ~l~--~L~~L~~~~~~--~~~~~~l~-------~l~~L~~L~l~~~-~~~~~~~l-~~l~~L~~L~l~~~~~~ 710 (718)
.++ +|+.|++..+. +..|..+. .+++|+.|++++| ...+|..+ ..+++|+.|+|++|...
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 433 56666665555 33444444 5556666666665 33344332 33556666666655543
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=1.2e-14 Score=149.03 Aligned_cols=168 Identities=15% Similarity=0.067 Sum_probs=138.5
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++++.+.+.++... .+|..+ .+.++.|+|++|.+++ - .|..+..+++|++|+|++|.++.+|.. +.
T Consensus 9 l~~l~~l~~~~~~l~-----~ip~~~--~~~l~~L~L~~N~l~~--~---~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 75 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-----ALPPDL--PKDTTILHLSENLLYT--F---SLATLMPYTRLTQLNLDRAELTKLQVD-GT 75 (290)
T ss_dssp STTCCEEECTTSCCS-----SCCSCC--CTTCCEEECTTSCCSE--E---EGGGGTTCTTCCEEECTTSCCCEEECC-SC
T ss_pred cCCccEEECCCCCCC-----cCCCCC--CCCCCEEEcCCCcCCc--c---CHHHhhcCCCCCEEECCCCccCcccCC-CC
Confidence 667888888877653 233332 2678999999999983 2 457899999999999999999999875 88
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeec----ccCc-ccCCCccccccccceecc--ccchHHhcccCCCCeEEE
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGH-LQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEI 682 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l 682 (718)
+++|++|++++|.++.+|..+..+++|++|+++ ..+| ..+..+++|+.|.+..+. ...+..|..+++|+.|++
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 999999999999999999999999999999992 3334 568899999999999887 444556789999999999
Q ss_pred eec-cccHHH-HhhccCCCCeEEEeeCCCC
Q 047642 683 REI-PYTNMN-FILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 683 ~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~ 710 (718)
++| ...+|. .+.++++|+.|+|++|.+.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 999 445554 4688999999999998765
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=157.32 Aligned_cols=194 Identities=18% Similarity=0.184 Sum_probs=114.9
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
....+.|.+..+.+....+..+ +++|+.|.+.++.... .++..|.++++|+.|+|++|.+.+ - .|..+.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~--~---~~~~~~ 125 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL----IPLGVFTGLSNLTKLDISENKIVI--L---LDYMFQ 125 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS----CCTTSSTTCTTCCEEECTTSCCCE--E---CTTTTT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc----cCcccccCCCCCCEEECCCCcccc--C---ChhHcc
Confidence 4456677777665555444444 6677777776665422 233456667777777777777663 2 445666
Q ss_pred hcccccEEeeccCCccccc-ccccccCCCcEEEecCccccccChh-hccccccceeeec-----ccCcccCCCccccccc
Q 047642 586 KLIHLRYFGFKCNSLVEFP-RSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTL 658 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L 658 (718)
.+++|++|++++|.+..++ ..+.++++|+.|++++|.++.+|.. +.++++|+.|++. ...+..+..+++|+.|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 6777777777776666553 3466666777777776666666543 5666666666651 1122234444444444
Q ss_pred c------------------------ceecc-cc-chHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 659 K------------------------YVNFQ-QW-DAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 659 ~------------------------~~~~~-~~-~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+ +..+. .. .+..+..+++|+.|++++| ....+..+.++++|+.|+|++|...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred eCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 4 44444 22 2245677777777777777 3333345677777777777776654
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=1.3e-14 Score=144.48 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=136.7
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCC-ccchhhhhhhhhccCCceEEEEEecC-Ccccccccccccc-
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPD-RESINIKHLQTLCSSLRFLRVLDLED-TRIEHSGKVLRLT- 581 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~l~~~p- 581 (718)
.+...+.+.+..+.+.......+ +++|+.|.+.++. ... ..+..|.++++|+.|++++ |.++ . +|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~l~~~n~l~---~---i~~ 98 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ----LESHSFYNLSKVTHIEIRNTRNLT---Y---IDP 98 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE----ECTTTEESCTTCCEEEEEEETTCC---E---ECT
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce----eCHhHcCCCcCCcEEECCCCCCee---E---cCH
Confidence 34467888888777776554444 7888888888875 422 3345677888888888887 7887 4 55
Q ss_pred hhhhhcccccEEeeccCCcccccccccccCCCc---EEEecCc-cccccChh-hccccccc-eeeec----ccCcccCCC
Q 047642 582 DSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLK---TMVASGN-SCWKLPSQ-ISKLHQLR-HLIAR----PLGHLQVST 651 (718)
Q Consensus 582 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~----~~~p~~~~~ 651 (718)
..+..+++|++|++++|.++.+|. +..+.+|+ +|++++| .++.+|.. |.++++|+ +|+++ ..+|.....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 467788888888888888888886 77777777 8888888 88888765 78888888 88872 234555444
Q ss_pred ccccccccceecc---ccchHHhccc-CCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCC
Q 047642 652 LTNLQTLKYVNFQ---QWDAVDARNL-INLQELEIREI-PYTNMNFILQVNSLRSLTLQTDT 708 (718)
Q Consensus 652 l~~L~~L~~~~~~---~~~~~~l~~l-~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~ 708 (718)
.++|+.|++.++. ...+..|..+ ++|+.|++++| ...+|.. .+++|+.|+++++.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 4778888887773 3334567788 88888888888 4445443 57788888887653
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=2.2e-14 Score=143.80 Aligned_cols=164 Identities=20% Similarity=0.175 Sum_probs=118.4
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLR 591 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~ 591 (718)
+.+....+.+.. .+..+.++++.|.+.++.... ..+..|.++++|++|+|++|.+++ - .|..+..+++|+
T Consensus 17 ~~l~~~~~~l~~-~p~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~l~~L~ 86 (251)
T 3m19_A 17 KEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLAT----LSDATFRGLTKLTWLNLDYNQLQT--L---SAGVFDDLTELG 86 (251)
T ss_dssp TEEECTTCCCSS-CCSCCCTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCC--C---CTTTTTTCTTCC
T ss_pred eEEecCCCCccc-cCCCCCCCCCEEEccCCCcCc----cCHhHhcCcccCCEEECCCCcCCc--c---CHhHhccCCcCC
Confidence 455666455554 334446788888888877643 344567888888999999888883 2 445578888899
Q ss_pred EEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeec----ccCcc-cCCCccccccccceecc
Q 047642 592 YFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHL-QVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 592 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~-~~~~l~~L~~L~~~~~~ 664 (718)
+|+|++|.++.+|+. +.++++|++|++++|.++.+|.. +.++++|++|+++ ..+|. .++.+++|+.|++..|.
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 999998888888755 57888899999988888888776 5788888888872 23333 46777777777777776
Q ss_pred --ccchHHhcccCCCCeEEEeec
Q 047642 665 --QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 665 --~~~~~~l~~l~~L~~L~l~~~ 685 (718)
...+..+..+++|+.|++++|
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHHHHhCCCCCCEEEeeCC
Confidence 334446777777777877777
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=1.4e-14 Score=164.96 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=56.1
Q ss_pred hhhhcccccEEeeccCCccc-ccccccccCCCcEEEecCccccc--cChhhccccccceeeec-----ccCcccCCCccc
Q 047642 583 SIGKLIHLRYFGFKCNSLVE-FPRSIGNLQCLKTMVASGNSCWK--LPSQISKLHQLRHLIAR-----PLGHLQVSTLTN 654 (718)
Q Consensus 583 ~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~ 654 (718)
.++.+++|++|++++|.+.. .|..++++++|++|++++|.+.. +|..++.+++|++|+++ ...|..++.+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 34444444444444444442 23334444444444444444442 34444444444444441 122333444444
Q ss_pred cccccceecc--ccchHHhcccCCCCeEEEeec-cccHHHHhhccC-CCCeEEEeeCCC
Q 047642 655 LQTLKYVNFQ--QWDAVDARNLINLQELEIREI-PYTNMNFILQVN-SLRSLTLQTDTA 709 (718)
Q Consensus 655 L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~-~L~~L~l~~~~~ 709 (718)
|+.|++.+|. +..|..++++++|+.|++++| ...+|..+..++ +|+.|++++|..
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 4444444444 223444444444555555444 333444444443 355555544443
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.52 E-value=3.3e-14 Score=155.94 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=104.2
Q ss_pred ccccEEeeccCCcccc-cccccccCCCcEEEecCcccccc-Chhhccccccceeeec-----ccCcccCCCccccccccc
Q 047642 588 IHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKY 660 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~ 660 (718)
++|++|++++|.+..+ |..++++++|++|++++|.++.+ |..|+++++|++|+++ ...|..++.+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 5788888988888855 56688999999999999999977 5578999999999982 234566888999999999
Q ss_pred eecc--ccchHHhcccCCCCeEEEeec-cccHH-HHhhccCCCCeEEEeeCCCCCccC
Q 047642 661 VNFQ--QWDAVDARNLINLQELEIREI-PYTNM-NFILQVNSLRSLTLQTDTAFNTLL 714 (718)
Q Consensus 661 ~~~~--~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~ 714 (718)
.+|. ...+..|+.+++|+.|++++| ...+| ..+..+++|++|+|++|...+..+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9887 455788999999999999999 33444 456889999999999998877654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=2.7e-14 Score=149.46 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=136.6
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
..+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|..+++|++|++++|.+++ - .|..++.+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~--~---~~~~~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLPPDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISK--I---SPGAFAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCC--B---CTTTTTTCTT
T ss_pred CCeEEEecCCCccc-cCccCCCCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCe--e---CHHHhcCCCC
Confidence 34556666444444 334457889999999987643 344578999999999999999983 2 4788999999
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccChh-hccccccceeeec-c------cCcccCCCccccccccce
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-P------LGHLQVSTLTNLQTLKYV 661 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-~------~~p~~~~~l~~L~~L~~~ 661 (718)
|++|++++|.++.+|..+. ++|++|++++|.++.+|.. +.++++|++|++. . ..+..+..+++|+.|.+.
T Consensus 102 L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 9999999999999998765 6788888888888777654 6777777777771 1 223344555555554443
Q ss_pred ---------------------ecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 662 ---------------------NFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 662 ---------------------~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.+. ...+..++.+++|+.|++++| ....+..+..+++|++|+|++|...
T Consensus 180 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 333 234567888888888888888 3333457888888999999888764
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.5e-14 Score=147.42 Aligned_cols=175 Identities=20% Similarity=0.145 Sum_probs=141.9
Q ss_pred ccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCccccc-
Q 047642 527 VHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEFP- 604 (718)
Q Consensus 527 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~lp- 604 (718)
..+.++++.|.+.++.... ..+..|.++++|++|++++|.++ . ++ ..++.+++|++|++++|.++.+|
T Consensus 24 ~~l~~~l~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~---~---~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 24 DNLPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQ---T---IEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp SSSCTTCCEEECTTCCCCE----ECTTTTTTCTTCSEEECTTCCCC---E---ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCccEEECCCCcccc----cCHhHhccccCCcEEECCCCcCC---c---cCHHHccCCcCCCEEECCCCccCccCh
Confidence 3346789999999987643 33457889999999999999998 4 44 57899999999999999999887
Q ss_pred ccccccCCCcEEEecCccccccCh-hhccccccceeeec----c--cCcccCCCccccccccceecc--ccchHHhcccC
Q 047642 605 RSIGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIAR----P--LGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLI 675 (718)
Q Consensus 605 ~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~----~--~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~ 675 (718)
..+.++++|++|++++|.+..++. .++++++|++|+++ . .+|..++.+++|+.|++.++. ...+..+..++
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence 458999999999999999998876 58999999999982 1 257789999999999999887 33455666666
Q ss_pred CCC----eEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 676 NLQ----ELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 676 ~L~----~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+|+ .|++++| ...++.......+|++|+|++|...+
T Consensus 174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred hccccceeeecCCCcccccCccccCCCcccEEECCCCceee
Confidence 666 8899988 55555555556699999999988653
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.8e-14 Score=167.99 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=128.2
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCC-ccchhhhhhhhh-------ccCCceEEEEEecCCccccccc
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPD-RESINIKHLQTL-------CSSLRFLRVLDLEDTRIEHSGK 576 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~-~~~~~~~~~~~~-------~~~l~~L~~L~l~~~~l~~~~~ 576 (718)
.....+.|.+..|.+....+..+ +++|+.|.+.+|. ... ..+|.. +..+++|+.|+|++|.++ .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLE---E 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---B
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCC---c
Confidence 34568899999777665555545 8899999999886 432 022333 344558999999999988 6
Q ss_pred ccccch--hhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccc-cceeeec----ccCcccC
Q 047642 577 VLRLTD--SIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQ-LRHLIAR----PLGHLQV 649 (718)
Q Consensus 577 l~~~p~--~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~-L~~L~l~----~~~p~~~ 649 (718)
+|. .++.+++|++|+|++|.++.+| .++++++|+.|++++|.++.+|..++++++ |++|+++ ..+|..+
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred ---cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 888 8999999999999999998888 888899999999999988888988888888 9888882 3455555
Q ss_pred CCccc--cccccceecc--ccch---HHhc--ccCCCCeEEEeec-cccHHHHhh-ccCCCCeEEEeeCCC
Q 047642 650 STLTN--LQTLKYVNFQ--QWDA---VDAR--NLINLQELEIREI-PYTNMNFIL-QVNSLRSLTLQTDTA 709 (718)
Q Consensus 650 ~~l~~--L~~L~~~~~~--~~~~---~~l~--~l~~L~~L~l~~~-~~~~~~~l~-~l~~L~~L~l~~~~~ 709 (718)
..++. |+.|++..|. +..| ..++ .+++|+.|++++| ...+|..+. .+++|+.|+|++|..
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 44433 6666655554 1111 1111 2224555555555 223333332 445555555555443
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=4.7e-14 Score=157.53 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
+...+++.+..+.+....+..+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.++ . +|..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~---~---lp~~-- 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLV---K---ISCH-- 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCC---E---EECC--
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCC----cChHHhhcccCCCEEecCCCcee---e---cCcc--
Confidence 3567778888776665444333 7778888887776532 33566777777888888887777 5 6655
Q ss_pred hcccccEEeeccCCccc--ccccccccCCCcEEEecCccc
Q 047642 586 KLIHLRYFGFKCNSLVE--FPRSIGNLQCLKTMVASGNSC 623 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~i 623 (718)
.+++|++|+|++|.++. +|..++++++|++|++++|.+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 67777777777777764 456677777777777766654
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=4e-14 Score=145.17 Aligned_cols=163 Identities=19% Similarity=0.184 Sum_probs=93.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... + +.+..+++|+.|++++|.++ . ++. ++.+++|++|++++|.++.+|. +.+
T Consensus 45 l~~L~~L~l~~~~i~~-----~-~~~~~l~~L~~L~L~~n~l~---~---~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~ 110 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-----V-QGIQYLPNVTKLFLNGNKLT---D---IKP-LANLKNLGWLFLDENKVKDLSS-LKD 110 (291)
T ss_dssp HHTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCC---C---CGG-GTTCTTCCEEECCSSCCCCGGG-GTT
T ss_pred cCcccEEEccCCCccc-----C-hhHhcCCCCCEEEccCCccC---C---Ccc-cccCCCCCEEECCCCcCCCChh-hcc
Confidence 4556666665554322 1 12455666666666666665 3 444 6666666666666666666553 666
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeecc---cCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIARP---LGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~---~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 685 (718)
+++|++|++++|.++.+| .+..+++|++|+++. .-...++.+++|+.|++.+|. ...+. +..+++|+.|++++|
T Consensus 111 l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC
Confidence 666666666666666653 466666666666621 111345556666666666555 22222 666667777777766
Q ss_pred -cccHHHHhhccCCCCeEEEeeCCC
Q 047642 686 -PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 686 -~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
...++ .+..+++|+.|++++|..
T Consensus 189 ~i~~l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 189 HISDLR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCBCG-GGTTCTTCSEEEEEEEEE
T ss_pred cCCCCh-hhccCCCCCEEECcCCcc
Confidence 33333 366667777777766643
No 53
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=149.77 Aligned_cols=193 Identities=9% Similarity=-0.043 Sum_probs=144.2
Q ss_pred ceeEEEeecCCcccccccc---c-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 510 LTRRQVIPSGNMKYVSLVH---F-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~---~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
..+++.+..+.+....+.. . +++|+.|.+.+|.............+..+++|++|+|++|.+.+ . .|..++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~---~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA--F---SCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC--C---CTTSCC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch--h---hHHHhc
Confidence 3778888877766544433 2 78899999999886431111111334578999999999999983 2 447788
Q ss_pred hcccccEEeeccCCccc---cccc--ccccCCCcEEEecCccccccChh----hccccccceeeec-----ccCcccCCC
Q 047642 586 KLIHLRYFGFKCNSLVE---FPRS--IGNLQCLKTMVASGNSCWKLPSQ----ISKLHQLRHLIAR-----PLGHLQVST 651 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~---lp~~--i~~l~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~-----~~~p~~~~~ 651 (718)
.+++|++|+|++|++.. +|.. +.++++|++|++++|.++.+|.. ++++++|++|+++ ...|..++.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 99999999999998764 5433 36899999999999999877663 5788999999992 334666777
Q ss_pred c---cccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 652 L---TNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 652 l---~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+ ++|+.|++..|. ...|..+. ++|+.|++++| ...+|. +..+++|+.|+|++|.+.
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 6 589999988887 55565554 79999999999 333333 678899999999998764
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=1.2e-14 Score=160.21 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=121.7
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh---
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS--- 583 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~--- 583 (718)
++++.|.+..+.+....+..+ +++|+.|.+.+|.... .++ +..+++|++|+|++|.++ . +|..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~--l~~l~~L~~L~Ls~N~l~---~---l~~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----TLD--LESLSTLRTLDLNNNYVQ---E---LLVGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE----EEE--CTTCTTCCEEECCSSEEE---E---EEECTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC----Ccc--cccCCCCCEEEecCCcCC---C---CCCCCCc
Confidence 356777777666666444444 6777777777776532 112 666777777777777665 2 2211
Q ss_pred --------------hhhcccccEEeeccCCcccc-cccccccCCCcEEEecCccccc-cChhhc-cccccceeeec-ccC
Q 047642 584 --------------IGKLIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWK-LPSQIS-KLHQLRHLIAR-PLG 645 (718)
Q Consensus 584 --------------i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~-lp~~i~-~L~~L~~L~l~-~~~ 645 (718)
...+++|++|+|++|.++.+ |..++++++|++|++++|.++. .|..+. .+++|++|+++ ..+
T Consensus 102 ~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 12345677777777777755 3456777777777777777775 344554 67777777772 111
Q ss_pred --cccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 646 --HLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 646 --p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.+....+++|+.|++.+|. ...|..++.+++|+.|++++| ...+|..+..+++|+.|++++|...
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 1223457777777777776 445555777778888888777 4556777777778888888777664
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.51 E-value=3.9e-14 Score=159.31 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=102.0
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIG 585 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~ 585 (718)
...+.+.+..+.+....+..+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++ . +| ..++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~---~---~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLS---S---LSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCC---S---CCHHHHT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccC---c---cCHHHhc
Confidence 355666666555554333333 5666666666655422 23345566666666666666665 3 33 3366
Q ss_pred hcccccEEeeccCCccc--ccccccccCCCcEEEecCcc-ccccCh-hhccccccceeeec-----ccCcccCCCccccc
Q 047642 586 KLIHLRYFGFKCNSLVE--FPRSIGNLQCLKTMVASGNS-CWKLPS-QISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
.+++|++|++++|.++. +|..++++++|++|++++|. +..+|. .++++++|++|++. ...|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 66666666666666653 34556666666666666664 445543 46666666666651 23455556666666
Q ss_pred cccceecc-ccchHH-hcccCCCCeEEEeec-cccH---H-HHhhccCCCCeEEEeeCCC
Q 047642 657 TLKYVNFQ-QWDAVD-ARNLINLQELEIREI-PYTN---M-NFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 657 ~L~~~~~~-~~~~~~-l~~l~~L~~L~l~~~-~~~~---~-~~l~~l~~L~~L~l~~~~~ 709 (718)
+|.+..+. ...+.. ++.+++|+.|++++| .... + .....+++|+.|++++|..
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 66655554 223332 234566666666665 1111 1 1123345666666665543
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.51 E-value=1.6e-14 Score=164.57 Aligned_cols=126 Identities=12% Similarity=-0.007 Sum_probs=69.6
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+..++++.+..+.+....+..+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.+++ - .|..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~ 101 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIF--M---AETAL 101 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSE--E---CTTTT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccc--c---Chhhh
Confidence 34566777777666665444444 6677777777665422 334556666666666666666652 2 34555
Q ss_pred hhcccccEEeeccCCcccc-cccccccCCCcEEEecCccccccC-hhhccccccceeee
Q 047642 585 GKLIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKLP-SQISKLHQLRHLIA 641 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l 641 (718)
+.+++|++|++++|.++.+ |..++++++|++|++++|.+..++ +.+..+++|++|++
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 6666666666666655554 334555555555555555555431 12222444444444
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=8e-14 Score=141.42 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=140.2
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DS 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~ 583 (718)
.+...+++.+..+.+.......+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++ . +| ..
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----i~~~~~~~l~~L~~L~l~~n~l~---~---~~~~~ 104 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT----LPAGIFKELKNLETLWVTDNKLQ---A---LPIGV 104 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC----CCTTTTSSCTTCCEEECCSSCCC---C---CCTTT
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe----eChhhhcCCCCCCEEECCCCcCC---c---CCHhH
Confidence 45578999999888777555445 8999999999887632 44566789999999999999998 5 56 45
Q ss_pred hhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeec----ccCc-ccCCCccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGH-LQVSTLTNLQ 656 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p-~~~~~l~~L~ 656 (718)
+..+++|++|++++|.++.+|+. +.++++|++|++++|.++.+|.. +..+++|++|++. ..+| ..+..+++|+
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 78999999999999999988765 68999999999999999999876 7899999999992 2334 3478899999
Q ss_pred cccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 657 TLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 657 ~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
.|++..+. ...+..+..+++|+.|++++|
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 99998887 334456889999999999998
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=2.6e-14 Score=137.57 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred CceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccc-cChhhcccccc
Q 047642 558 LRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWK-LPSQISKLHQL 636 (718)
Q Consensus 558 l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L 636 (718)
+++|+.|++++|.++ . +| .+..+++|++|++++|.++.+| .+.++++|++|++++|.++. .|..++++++|
T Consensus 43 l~~L~~L~l~~n~i~---~---l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT---D---LT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCS---C---CT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCCcc---C---hH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 334444444444444 2 33 3444444444444444443333 34444444444444444442 33444444444
Q ss_pred ceeeec-----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCC
Q 047642 637 RHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 637 ~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
++|+++ ...|..++.+++|+.|++..|. ......+..+++|+.|++++| ...++ .+..+++|+.|++++|..
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 444441 1123334444555555555543 222236788889999999988 33343 788899999999998875
Q ss_pred C
Q 047642 710 F 710 (718)
Q Consensus 710 ~ 710 (718)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 59
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=9.7e-14 Score=152.60 Aligned_cols=185 Identities=18% Similarity=0.191 Sum_probs=105.5
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
.++.+.+..+.+.....-..+++|+.|.+.++.... ++. +..+++|++|++++|.+. . +|. ++.+++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~---~---~~~-~~~l~~ 113 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-----ITP-LKNLTKLVDILMNNNQIA---D---ITP-LANLTN 113 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCC---C---CGG-GTTCTT
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-----chh-hhccccCCEEECCCCccc---c---Chh-hcCCCC
Confidence 456666665554442211226777777777766532 222 667777777777777776 3 444 777777
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec--ccCcccCCCccccccccceeccccc
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR--PLGHLQVSTLTNLQTLKYVNFQQWD 667 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~--~~~p~~~~~l~~L~~L~~~~~~~~~ 667 (718)
|++|++++|.++.+|+ +.++++|++|++++|.+..+|. ++++++|++|++. ......+..+++|+.|++..+.-..
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC
Confidence 7777777777777765 6777777777777777766653 5556666655551 1111124444444444444443111
Q ss_pred hHH----------------------hcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 668 AVD----------------------ARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 668 ~~~----------------------l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
... ++.+++|+.|++++| ...+ ..+..+++|+.|++++|...
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccc
Confidence 122 445555555555555 1111 34566666666666666553
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=160.44 Aligned_cols=197 Identities=17% Similarity=0.062 Sum_probs=133.5
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
..+.+.+..+..........+++|+.|.+.++.... ....+..+..+++|+.|++++|.+. . +|..++.+++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~l~~n~l~---~---~~~~~~~l~~ 397 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI---T---MSSNFLGLEQ 397 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBE--EEEEEHHHHTCSCCCEEECCSCSEE---E---EEEEEETCTT
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCccCc--cccccccccccCccCEEECCCCccc---c---ccccccccCC
Confidence 445555554433332222226677777776665432 1112345667777888888887776 4 5655777888
Q ss_pred ccEEeeccCCcccccc--cccccCCCcEEEecCccccc-cChhhccccccceeeec------ccCcccCCCccccccccc
Q 047642 590 LRYFGFKCNSLVEFPR--SIGNLQCLKTMVASGNSCWK-LPSQISKLHQLRHLIAR------PLGHLQVSTLTNLQTLKY 660 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~------~~~p~~~~~l~~L~~L~~ 660 (718)
|++|++++|.+..+++ .+.++++|++|++++|.+.. .|..+.++++|++|++. ..+|..+..+++|+.|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 8888888877776543 46778888888888887764 45567788888888871 246777888888888888
Q ss_pred eecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCccC
Q 047642 661 VNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNTLL 714 (718)
Q Consensus 661 ~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 714 (718)
.+|. +..|..++.+++|+.|++++| ....+..+.++++|+.|++++|...+..+
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 7776 445677888888888888888 33344567888888888888887766543
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.50 E-value=2e-13 Score=143.89 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=98.6
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... .+. +..+++|+.|++++|.+. . ++. +..+++|++|++++|.+..++. +..
T Consensus 154 l~~L~~L~l~~~~~~~-----~~~-~~~l~~L~~L~l~~n~l~---~---~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~ 219 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKD-----VTP-IANLTDLYSLSLNYNQIE---D---ISP-LASLTSLHYFTAYVNQITDITP-VAN 219 (347)
T ss_dssp CTTCCEEECCSSCCCC-----CGG-GGGCTTCSEEECTTSCCC---C---CGG-GGGCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CCCCcEEEecCCCcCC-----chh-hccCCCCCEEEccCCccc---c---ccc-ccCCCccceeecccCCCCCCch-hhc
Confidence 5555556555554322 111 455666666666666665 3 443 5566666666666666665554 566
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeecc---cCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIARP---LGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI- 685 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~---~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~- 685 (718)
+++|++|++++|.++.+|. +..+++|++|+++. .....+..+++|+.|++.++.-.....+..+++|+.|++++|
T Consensus 220 ~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence 6667777777776666665 66666777776621 111345566666666666665222245666677777777766
Q ss_pred -cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 686 -PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 686 -~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
....+..+.++++|+.|+|++|...+
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCcChhHhhccccCCEEEccCCcccc
Confidence 44455666677777777777766543
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=159.32 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=100.3
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+..++++.+..+.+.......+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.++ .+ .|..|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l~~L~~L~L~~n~l~---~~--~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQ---SL--ALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCC---EE--CTTTT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc----cCcccccCchhCCEEeCcCCcCC---cc--CHhhh
Confidence 45578889998777776555444 8889999998887532 34567888899999999999887 41 34678
Q ss_pred hhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccc--cChhhccccccceeee
Q 047642 585 GKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWK--LPSQISKLHQLRHLIA 641 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l 641 (718)
+.+++|++|++++|.++.+|. .++++++|++|++++|.++. +|..|+++++|++|++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 889999999999988888876 58888899999999888875 6888888889998887
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.49 E-value=4e-14 Score=161.24 Aligned_cols=192 Identities=20% Similarity=0.155 Sum_probs=150.6
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+..++++.+..+.+.......+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.+++ - .|..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----i~~~~~~~l~~L~~L~Ls~n~l~~--~---~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET----IEDKAWHGLHHLSNLILTGNPIQS--F---SPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCC--C---CTTSS
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc----cCHHHhhchhhcCEeECCCCcccc--c---Chhhc
Confidence 45678999999887777655455 8899999999887633 446678899999999999999883 2 47889
Q ss_pred hhcccccEEeeccCCccccc-ccccccCCCcEEEecCcccc--ccChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 585 GKLIHLRYFGFKCNSLVEFP-RSIGNLQCLKTMVASGNSCW--KLPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
+++++|++|++++|.++.+| ..++++++|++|++++|.+. .+|..++++++|++|+++ ...|..++.+++|+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 99999999999999999887 56899999999999999887 578999999999999982 23355566777665
Q ss_pred ----cccceecc-ccchHHhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEeeC
Q 047642 657 ----TLKYVNFQ-QWDAVDARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 657 ----~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~ 707 (718)
+|++..+. ...+.......+|+.|++++| ....|..+.++++|+.+++..+
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 56666666 334444444448999999998 3567888999999988887543
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=1.1e-13 Score=155.96 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+...+.+.+..+.+....+..+ +++|+.|.+.+|.... ..+..|..+++|++|+|++|.++ . +|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~---~---lp~~- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQ---N---ISCC- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCC---E---ECSC-
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCC---c---cCcc-
Confidence 34577888888777776555455 7888888888887633 34566788888888888888887 5 7765
Q ss_pred hhcccccEEeeccCCccccc--ccccccCCCcEEEecCcccc
Q 047642 585 GKLIHLRYFGFKCNSLVEFP--RSIGNLQCLKTMVASGNSCW 624 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~i~ 624 (718)
.+++|++|++++|.++.+| ..++++++|++|++++|.++
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 7888888888888887654 57788888888888877654
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=4.7e-14 Score=160.67 Aligned_cols=194 Identities=17% Similarity=0.114 Sum_probs=144.7
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SI 584 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i 584 (718)
....+.+.+..+.+..+ +..+ +++|+.|.+.++.... ..+..+..+++|+.|++++|.+.+ . +|. .+
T Consensus 277 l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~--~---~~~~~~ 346 (606)
T 3t6q_A 277 FSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLTHLSIKGNTKRL--E---LGTGCL 346 (606)
T ss_dssp CTTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSB----GGGGCGGGCTTCSEEECCSCSSCC--B---CCSSTT
T ss_pred ccCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCc----CchhhhhccCcCCEEECCCCCccc--c---cchhhh
Confidence 45677778776666543 2233 6788888888776532 345567778888888888887764 4 554 47
Q ss_pred hhcccccEEeeccCCcccc---cccccccCCCcEEEecCcccccc-Chhhccccccceeeec-----ccCcc-cCCCccc
Q 047642 585 GKLIHLRYFGFKCNSLVEF---PRSIGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR-----PLGHL-QVSTLTN 654 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~-----~~~p~-~~~~l~~ 654 (718)
+.+++|++|++++|.+..+ |..+.++++|++|++++|.+..+ |..++++++|++|++. ...|. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 8888899999988888866 56688888999999998888755 5568888999999882 22333 3788889
Q ss_pred cccccceecc--ccchHHhcccCCCCeEEEeec--cc---cHHHHhhccCCCCeEEEeeCCCCC
Q 047642 655 LQTLKYVNFQ--QWDAVDARNLINLQELEIREI--PY---TNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 655 L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~---~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
|+.|++.++. ...+..++.+++|+.|++++| .. ..+..+..+++|+.|+|++|+..+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 9999888877 456777889999999999988 22 223568899999999999987754
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=7.8e-14 Score=164.77 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=94.9
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSI 584 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i 584 (718)
.+..++.|.+..|.+....+..+ +++|+.|.+.++... ....+..|.++++|++|+|++|.+++ - .|..|
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~--~---~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYF--L---HPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCE--E---CTTSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcc--c---CHhHc
Confidence 55678889999877776555555 888888888887432 12335677888888888888888873 2 57778
Q ss_pred hhcccccEEeeccCCccc-cccc--ccccCCCcEEEecCccccccC--hhhccccccceeee
Q 047642 585 GKLIHLRYFGFKCNSLVE-FPRS--IGNLQCLKTMVASGNSCWKLP--SQISKLHQLRHLIA 641 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l 641 (718)
+++++|++|+|++|.++. +|.. ++++++|++|++++|.++.++ ..|++|++|++|++
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 888888888888888874 5554 778888888888888777653 45788888888877
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.48 E-value=9.3e-14 Score=155.10 Aligned_cols=118 Identities=17% Similarity=0.048 Sum_probs=100.7
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLR 591 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~ 591 (718)
+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|..+++|++|+|++|.+++ - .|..++.+++|+
T Consensus 3 ~~l~ls~n~l~~-ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLSQKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQY--L---DISVFKFNQELE 72 (520)
T ss_dssp CEEECTTSCCSS-CCCSCCTTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCE--E---EGGGGTTCTTCC
T ss_pred ceEecCCCCccc-ccccccccccEEECCCCcccc----cChhhccccccccEEecCCCccCC--c---ChHHhhcccCCC
Confidence 567777666665 344446899999999998643 445678999999999999999984 2 478999999999
Q ss_pred EEeeccCCcccccccccccCCCcEEEecCccccc--cChhhccccccceeee
Q 047642 592 YFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWK--LPSQISKLHQLRHLIA 641 (718)
Q Consensus 592 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l 641 (718)
+|+|++|.++.+|.. .+++|++|++++|.++. +|..++++++|++|++
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 999999999999987 89999999999999986 5789999999999998
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=2.1e-13 Score=143.73 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=110.7
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
....+.+.+..+.+.....-..+++|+.|.+.++.... + +.+..+++|++|++++|.+. . +|. +..+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~---~---~~~-~~~l 131 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNIS---D---ISP-LANL 131 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCC---C---CGG-GTTC
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCccc---C---chh-hccC
Confidence 34556666665554443321115666666666654422 1 23556666666666666665 3 443 6666
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceec
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
++|++|++++|.....++.+.++++|++|++++|.+..+|. +..+++|++|+++ ..++. +..+++|+.|.+..+
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVN 209 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccC
Confidence 66666666666433333346666666666666666666654 6666777777662 11222 555666666666666
Q ss_pred cccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 664 QQWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 664 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.......+..+++|+.|++++| ....+. +..+++|++|++++|...+
T Consensus 210 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 210 QITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence 5222222777888888888888 333333 7788888888888876543
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=1e-14 Score=153.11 Aligned_cols=197 Identities=13% Similarity=0.113 Sum_probs=116.7
Q ss_pred CceeEEEeecCCcccc-ccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCC-cccccccccccchhh
Q 047642 509 SLTRRQVIPSGNMKYV-SLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDT-RIEHSGKVLRLTDSI 584 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~-~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~l~~~p~~i 584 (718)
...+++.+..+.+... .+..+ +++|+.|.+.++.... ..+..+..+++|+.|++++| .+++ .. +|..+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~L~~~~~l~~-~~---l~~~~ 164 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----PIVNTLAKNSNLVRLNLSGCSGFSE-FA---LQTLL 164 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----HHHHHHTTCTTCSEEECTTCBSCCH-HH---HHHHH
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----HHHHHHhcCCCCCEEECCCCCCCCH-HH---HHHHH
Confidence 4566677765544322 11111 6777777777765422 33445566777777777777 4552 01 45556
Q ss_pred hhcccccEEeeccC-Cccc--ccccccccC-CCcEEEecCcc--c--cccChhhccccccceeeec------ccCcccCC
Q 047642 585 GKLIHLRYFGFKCN-SLVE--FPRSIGNLQ-CLKTMVASGNS--C--WKLPSQISKLHQLRHLIAR------PLGHLQVS 650 (718)
Q Consensus 585 ~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~--i--~~lp~~i~~L~~L~~L~l~------~~~p~~~~ 650 (718)
..+++|++|++++| .++. +|..+.+++ +|++|++++|. + ..+|..+.++++|++|+++ ...+..+.
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 77777777777777 7763 566667777 77777777773 3 3566666777777777771 12344566
Q ss_pred Cccccccccceeccc---cchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCCccCC
Q 047642 651 TLTNLQTLKYVNFQQ---WDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFNTLLP 715 (718)
Q Consensus 651 ~l~~L~~L~~~~~~~---~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p 715 (718)
.+++|+.|++..+.. .....++++++|+.|++++| .......+. .+|..|++++|+..+..+|
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHH--hhCcceEEecccCccccCC
Confidence 677777777766642 22235667777777777776 111111221 2355555776666554443
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.1e-13 Score=138.82 Aligned_cols=147 Identities=22% Similarity=0.193 Sum_probs=78.2
Q ss_pred ceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hcccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQL 636 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L 636 (718)
+.|+.|+|++|.+++ - .|..++.+++|++|+|++|.++.+|+. +.++++|++|++++|.++.+|.. +..+++|
T Consensus 35 ~~l~~L~L~~n~l~~--~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT--L---SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCC--C---CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCc--c---CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 345566666666552 1 233455666666666666666655443 45566666666666666655533 4556666
Q ss_pred ceeeec----ccCccc-CCCccccccccceecc--ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeC
Q 047642 637 RHLIAR----PLGHLQ-VSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 637 ~~L~l~----~~~p~~-~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~ 707 (718)
++|+++ ..+|.. +..+++|+.|++..+. ...+..|+.+++|+.|++++| ....+..+.++++|+.|+|++|
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 666551 222222 3555666666655555 222234556666666666665 2222234555666666666665
Q ss_pred CCC
Q 047642 708 TAF 710 (718)
Q Consensus 708 ~~~ 710 (718)
.+.
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 543
No 71
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=1.1e-13 Score=155.57 Aligned_cols=194 Identities=14% Similarity=0.036 Sum_probs=151.1
Q ss_pred CceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc---hh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT---DS 583 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p---~~ 583 (718)
...+.+.+..+.+...+...+ +++|+.|.+.+|....... ..+..+..+++|+.|++++|.++ . +| ..
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~---~---~~~~~~~ 382 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLR---S---MQKTGEI 382 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH-HHHTCTTSSTTCCEEECTTSCCC---C---HHHHHHH
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc-cchhhhhccccCcEEEccCCccc---c---cccchhh
Confidence 457788888766655333322 7899999999887643100 01234678899999999999988 4 54 45
Q ss_pred hhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeee-cccCcccCCCcccccccccee
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIA-RPLGHLQVSTLTNLQTLKYVN 662 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l-~~~~p~~~~~l~~L~~L~~~~ 662 (718)
++.+++|++|++++|+++.+|..+..+++|++|++++|.++.+|..+. ++|++|++ ...+...++.+++|++|++.+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp GGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred hhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhcccCChhcEEECCC
Confidence 889999999999999999999999999999999999999998887653 68999998 334444456889999999998
Q ss_pred cc-ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCCeEEEeeCCCCCc
Q 047642 663 FQ-QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLRSLTLQTDTAFNT 712 (718)
Q Consensus 663 ~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~ 712 (718)
|. ...|. .+.+++|+.|++++| ....|..+..+++|+.|+|++|...+.
T Consensus 461 N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 461 NKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp SCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 88 54444 578999999999999 445556799999999999999987664
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=2e-14 Score=149.11 Aligned_cols=191 Identities=12% Similarity=0.037 Sum_probs=144.1
Q ss_pred CCceeEEEeecCCcccccccc----ccccCcEeeeecCCccchhhhhhhhhccCC-----ceEEEEEecCCccccccccc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVH----FYPRLRSLLFFNPDRESINIKHLQTLCSSL-----RFLRVLDLEDTRIEHSGKVL 578 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~----~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~l~ 578 (718)
....+++.+..+.+....+.. .+++|+.|.+.+|.... . +..+..+ ++|++|++++|.+.+ -
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~-~~~~~~l~~~~~~~L~~L~L~~N~l~~--~-- 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT----R-DAWLAELQQWLKPGLKVLSIAQAHSLN--F-- 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS----S-SSHHHHHHTTCCTTCCEEEEESCSCCC--C--
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc----h-hHHHHHHHHhhcCCCcEEEeeCCCCcc--c--
Confidence 356788888877776433332 27899999999988643 1 3444444 889999999999983 2
Q ss_pred ccchhhhhcccccEEeeccCCccc---ccccc--cccCCCcEEEecCccccccC---hh-hccccccceeeec-----cc
Q 047642 579 RLTDSIGKLIHLRYFGFKCNSLVE---FPRSI--GNLQCLKTMVASGNSCWKLP---SQ-ISKLHQLRHLIAR-----PL 644 (718)
Q Consensus 579 ~~p~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~i~~lp---~~-i~~L~~L~~L~l~-----~~ 644 (718)
.|..++.+++|++|++++|++.. +|..+ .++++|++|++++|.++.+| .. +.++++|++|+++ ..
T Consensus 165 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 165 -SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp -CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred -hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 44789999999999999998753 45565 88999999999999998544 33 4678999999982 22
Q ss_pred Cc-ccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 645 GH-LQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 645 ~p-~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.| ..+..+++|+.|++.+|. ...|..+. ++|+.|++++| ...+|. +..+++|++|+|++|...+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 22 345567899999988887 55666665 88999999999 444455 8899999999999987643
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=156.00 Aligned_cols=140 Identities=19% Similarity=0.118 Sum_probs=111.2
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLR 591 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~ 591 (718)
+.+.+..+.+.. .+..+.++++.|.+.++.... ..+..|.++++|++|+|++|.+++ - .|..++.+++|+
T Consensus 34 ~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~--~---~~~~~~~l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSISE----LRMPDISFLSELRVLRLSHNRIRS--L---DFHVFLFNQDLE 103 (562)
T ss_dssp CEEECTTSCCCS-CCTTSCTTCCEEECCSSCCCC----CCGGGTTTCTTCCEEECCSCCCCE--E---CTTTTTTCTTCC
T ss_pred cEEEcCCCCCcc-CCCCCCCCcCEEECCCCCccc----cChhhhccCCCccEEECCCCCCCc--C---CHHHhCCCCCCC
Confidence 778888777776 444457899999999998743 445788999999999999999983 2 467899999999
Q ss_pred EEeeccCCcccccccccccCCCcEEEecCccccccC--hhhccccccceeeec-ccC-cccCCCcccc--ccccceec
Q 047642 592 YFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLP--SQISKLHQLRHLIAR-PLG-HLQVSTLTNL--QTLKYVNF 663 (718)
Q Consensus 592 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~-~~~-p~~~~~l~~L--~~L~~~~~ 663 (718)
+|+|++|.++.+|.. .+++|++|++++|.++.+| ..|+++++|++|+++ ..+ ...+..+++| +.|++..+
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence 999999999999987 8999999999999999765 789999999999982 222 2334445555 55555443
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=163.83 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=147.3
Q ss_pred ecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccccccccc-chhhhhcccccEEee
Q 047642 517 PSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRL-TDSIGKLIHLRYFGF 595 (718)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~-p~~i~~l~~L~~L~l 595 (718)
..+++..++ . ..++++.|.+.+|.... ..+..|.++++|++|+|++|.+.+ . + |..|+++++|++|+|
T Consensus 12 s~~~L~~vP-~-lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~--~---i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 12 RFCNLTQVP-Q-VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPL--T---IDKEAFRNLPNLRILDL 80 (844)
T ss_dssp SCCCSSCCC-S-SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCC--E---ECTTTTSSCTTCCEEEC
T ss_pred cCCCCCCCC-C-CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCcc--c---cCHHHhcCCCCCCEEEC
Confidence 334455533 3 67899999999988643 446778999999999999996543 5 5 678999999999999
Q ss_pred ccCCcccc-cccccccCCCcEEEecCccccc-cChh--hccccccceeeec-----cc-CcccCCCccccccccceecc-
Q 047642 596 KCNSLVEF-PRSIGNLQCLKTMVASGNSCWK-LPSQ--ISKLHQLRHLIAR-----PL-GHLQVSTLTNLQTLKYVNFQ- 664 (718)
Q Consensus 596 ~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~-----~~-~p~~~~~l~~L~~L~~~~~~- 664 (718)
++|.+..+ |..++++++|++|+|++|.++. +|.. +++|++|++|+++ .. .+..++++++|++|++..+.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 99999977 7789999999999999999985 5665 8999999999992 22 23468999999999998887
Q ss_pred -ccchHHhccc--CCCCeEEEeec--cccHHHHhhccCC------CCeEEEeeCCCCCc
Q 047642 665 -QWDAVDARNL--INLQELEIREI--PYTNMNFILQVNS------LRSLTLQTDTAFNT 712 (718)
Q Consensus 665 -~~~~~~l~~l--~~L~~L~l~~~--~~~~~~~l~~l~~------L~~L~l~~~~~~~~ 712 (718)
...+..++.+ ++|+.|+++.| ....|..++.+.+ |+.|+|++|...+.
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 5566777777 89999999998 4445555555544 99999999866543
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=8.8e-14 Score=156.62 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=101.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... ++ .+..+++|+.|+|++|.++ . +|+ ++.+++|++|+|++|.+..+| .+.+
T Consensus 42 L~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~Ls~N~l~---~---~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-----VQ-GIQYLPNVTKLFLNGNKLT---D---IKP-LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp HTTCCCCBCTTCCCCC-----CT-TGGGCTTCCEEECTTSCCC---C---CGG-GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred CCCCCEEECcCCCCCC-----Ch-HHccCCCCCEEEeeCCCCC---C---Chh-hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 5566666666555422 22 3556677777777777766 3 444 667777777777777776665 5666
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeecc---cCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIARP---LGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~---~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 685 (718)
+++|+.|+|++|.+..+| .+..|++|+.|+++. .....++.+++|+.|++..|. ...+. +..+++|+.|+|++|
T Consensus 108 l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC
Confidence 777777777777666654 466677777776621 111345666667777666665 22222 677777777777777
Q ss_pred -cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 686 -PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 686 -~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
...+ +.+..+++|+.|+|++|...
T Consensus 186 ~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 186 HISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred CCCCC-hHHccCCCCCEEEccCCcCc
Confidence 3233 35677777777777776543
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=7.7e-14 Score=138.78 Aligned_cols=175 Identities=15% Similarity=0.052 Sum_probs=140.6
Q ss_pred ccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-ccccccccccch-hhhhcccccEEeecc-CCcccccc
Q 047642 529 FYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRLTD-SIGKLIHLRYFGFKC-NSLVEFPR 605 (718)
Q Consensus 529 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~p~-~i~~l~~L~~L~l~~-~~l~~lp~ 605 (718)
+.++++.|.+.++.... ..+..|..+++|+.|++++|. ++ . +|. .+..+++|++|++++ |.++.+|+
T Consensus 29 ~~~~l~~L~l~~n~l~~----i~~~~~~~l~~L~~L~l~~n~~l~---~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRT----IPSHAFSNLPNISRIYVSIDVTLQ---Q---LESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CCTTCCEEEEESCCCSE----ECTTTTTTCTTCCEEEEECCSSCC---E---ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CCCcccEEEEeCCcceE----ECHHHccCCCCCcEEeCCCCCCcc---e---eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 56689999999988643 344578899999999999997 87 5 664 789999999999998 99999985
Q ss_pred -cccccCCCcEEEecCccccccChhhccccccc---eeeecc-----cCc-ccCCCccccc-cccceecc-ccchHHhcc
Q 047642 606 -SIGNLQCLKTMVASGNSCWKLPSQISKLHQLR---HLIARP-----LGH-LQVSTLTNLQ-TLKYVNFQ-QWDAVDARN 673 (718)
Q Consensus 606 -~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~~-----~~p-~~~~~l~~L~-~L~~~~~~-~~~~~~l~~ 673 (718)
.+.++++|++|++++|.++.+|. ++.+++|+ +|+++. .+| ..+..+++|+ .|++..+. ...+.....
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 57899999999999999999997 88888888 888832 233 3478899999 99988877 444444334
Q ss_pred cCCCCeEEEeec--cccH-HHHhhcc-CCCCeEEEeeCCCCCccCC
Q 047642 674 LINLQELEIREI--PYTN-MNFILQV-NSLRSLTLQTDTAFNTLLP 715 (718)
Q Consensus 674 l~~L~~L~l~~~--~~~~-~~~l~~l-~~L~~L~l~~~~~~~~~~p 715 (718)
.++|+.|++++| ...+ +..+.++ ++|+.|+|++|.... +++
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~ 222 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS 222 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CCh
Confidence 489999999998 4444 4568889 999999999987643 443
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.44 E-value=5.7e-14 Score=146.07 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=120.2
Q ss_pred ceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccc------------
Q 047642 510 LTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSG------------ 575 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~------------ 575 (718)
+.+.+.+..+.+....+..+ +++|+.|.+.+|.... .. + +..+++|++|++++|.+++..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~-~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE----TL-D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE----EE-E-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc----ch-h-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 44555555444444332222 5555555555554422 11 1 445555555555555544100
Q ss_pred ----cccccchhhhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccccC-hhh-ccccccceeeec----cc
Q 047642 576 ----KVLRLTDSIGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLP-SQI-SKLHQLRHLIAR----PL 644 (718)
Q Consensus 576 ----~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i-~~L~~L~~L~l~----~~ 644 (718)
. +|. ..+++|++|++++|.++.+++ .++.+++|++|++++|.++.++ ..+ ..+++|++|+++ ..
T Consensus 109 n~l~~---~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 109 NNISR---VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SCCSE---EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CccCC---cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 2 222 235677888888888887754 5677888888888888887654 344 467888888882 11
Q ss_pred CcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 645 GHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 645 ~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+ .....+++|+.|++.+|. ...+..+..+++|+.|++++| ...+|..+..+++|+.|+|++|...
T Consensus 184 ~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 184 V-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred c-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 2 233457888888888777 555566888888899988888 5567777888888999998888765
No 78
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=1.1e-13 Score=159.82 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=92.8
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-h
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-S 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~ 583 (718)
.+..++++.+..+.+.......+ +++|+.|.+.++.... ..+..|.++++|++|+|++|.++ . +|. .
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~---~---l~~~~ 92 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELS---Q---LSDKT 92 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCC---C---CCTTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccC---c---cChhh
Confidence 44678888888777766555444 7888888888776532 34566778888888888888887 5 665 5
Q ss_pred hhhcccccEEeeccCCcccccc-cccccCCCcEEEecCcccccc-Chhhccccccceeee
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIA 641 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l 641 (718)
|+.+++|++|++++|.++.+|+ .++++++|++|++++|.++.+ |..++++++|++|++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 7888888888888888887764 577888888888888877755 445677777777776
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.44 E-value=4.3e-13 Score=146.51 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=88.9
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
..+.+.+..+.+...+.-..+++|+.|.+.++.... ++ +..+++|++|++++|.++ . +| ++.+++
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-----~~--~~~l~~L~~L~Ls~N~l~---~---~~--~~~l~~ 107 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-----LD--LSQNTNLTYLACDSNKLT---N---LD--VTPLTK 107 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCSSCCS---C---CC--CTTCTT
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-----Ec--cccCCCCCEEECcCCCCc---e---ee--cCCCCc
Confidence 344455554444332100014555555555544322 11 344455555555555554 2 32 444555
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccCh--------------------hhccccccceeeec----ccC
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS--------------------QISKLHQLRHLIAR----PLG 645 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~--------------------~i~~L~~L~~L~l~----~~~ 645 (718)
|++|++++|.++.+| ++++++|++|++++|.++.+|- .++.+++|++|+++ ..+
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence 555555555555443 4445555555555554444430 24445555555541 112
Q ss_pred cccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 646 HLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 646 p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
| ++.+++|+.|.+..+. ... .++.+++|+.|++++| ...+| +..+++|+.|++++|...+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC
Confidence 2 4555555555555554 222 3666677777777777 33344 6677777777777776544
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=2.8e-13 Score=156.51 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=130.3
Q ss_pred ccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccc-
Q 047642 527 VHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPR- 605 (718)
Q Consensus 527 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~- 605 (718)
..+.++++.|.+.++.... .++..|.++++|++|+|++|.+++ - .|..++++++|++|+|++|.++.+|+
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~--~---~~~~~~~l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRR----LPAANFTRYSQLTSLDVGFNTISK--L---EPELCQKLPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp SCSCTTCSEEECCSSCCCC----CCGGGGGGGTTCSEEECCSSCCCC--C---CTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred cccCCCCcEEECCCCCCCC----cCHHHHhCCCcCcEEECCCCccCc--c---CHHHHhcccCcCEEECCCCccCccChh
Confidence 3446889999999987643 445678999999999999999984 3 57889999999999999999999998
Q ss_pred cccccCCCcEEEecCccccccC-hhhccccccceeeec-----ccCcccCCCccccccccceecc--ccchHHhc--ccC
Q 047642 606 SIGNLQCLKTMVASGNSCWKLP-SQISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDAR--NLI 675 (718)
Q Consensus 606 ~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~--~l~ 675 (718)
.++++++|++|++++|.++.+| ..|+++++|++|+++ ...|..++++++|+.|++..+. +..+..++ .++
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 4899999999999999999887 469999999999992 3345668899999999998887 44555554 558
Q ss_pred CCCeEEEeec--cccHHHHhhcc
Q 047642 676 NLQELEIREI--PYTNMNFILQV 696 (718)
Q Consensus 676 ~L~~L~l~~~--~~~~~~~l~~l 696 (718)
+|+.|++++| ....|..+..+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGS
T ss_pred cccEEECCCCcccccChhhhhhh
Confidence 8999999988 33334444443
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.43 E-value=3.7e-13 Score=147.93 Aligned_cols=187 Identities=20% Similarity=0.204 Sum_probs=126.3
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
....+.+.+..+.+....+...+++|+.|.+.++.... + ..+..+++|+.|++++|.++ . ++. ++.+
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~l~~n~l~---~---~~~-~~~l 264 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----I-GTLASLTNLTDLDLANNQIS---N---LAP-LSGL 264 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCC---C---CGG-GTTC
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-----c-hhhhcCCCCCEEECCCCccc---c---chh-hhcC
Confidence 34566666665555543332236777777777766532 1 24566777888888888777 3 443 7777
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceec
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
++|++|++++|.++.+|+ +..+++|+.|++++|.+..+|. ++.+++|++|+++ ...++ +..+++|+.|++.++
T Consensus 265 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 888888888888877776 7778888888888887777765 7778888888772 11121 567777888877777
Q ss_pred cccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 664 QQWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 664 ~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.-.....+..+++|+.|++++| ....++ +..+++|+.|++++|...+
T Consensus 342 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 KVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 6222356778888888888888 222222 7788888888888876544
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.4e-13 Score=153.13 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=85.3
Q ss_pred CceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI 588 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~ 588 (718)
...+.+.+..|.+..++ ..+++|+.|.+.+|.... +|. +.+ +|+.|+|++|.++ . +|. .++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-----ip~-l~~--~L~~L~Ls~N~l~---~---lp~---~l~ 140 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLST-----LPE-LPA--SLKHLDVDNNQLT---M---LPE---LPA 140 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-----CCC-CCT--TCCEEECCSSCCS---C---CCC---CCT
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-----cch-hhc--CCCEEECCCCcCC---C---CCC---cCc
Confidence 34566666655554322 335666666666655422 222 222 5666666666665 3 554 456
Q ss_pred cccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCcccc-------cc
Q 047642 589 HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNL-------QT 657 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L-------~~ 657 (718)
+|++|+|++|.|+.+|. .+++|++|++++|.++.+|. |. ++|++|+++ ..+|. ++. +| +.
T Consensus 141 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEE
T ss_pred cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceE
Confidence 66666666666666664 45566666666666666665 44 566666651 22333 332 44 55
Q ss_pred ccceecc-ccchHHhcccCCCCeEEEeec--cccHHHHhhcc
Q 047642 658 LKYVNFQ-QWDAVDARNLINLQELEIREI--PYTNMNFILQV 696 (718)
Q Consensus 658 L~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l 696 (718)
|++.+|. ..+|..+..+++|+.|++++| ...+|..+.++
T Consensus 212 L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5555555 445555555666666666666 44455555543
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1.4e-13 Score=151.66 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=122.7
Q ss_pred cCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccc-cccccc-ccCCCcEEEecCccccccChhhccc
Q 047642 556 SSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE-FPRSIG-NLQCLKTMVASGNSCWKLPSQISKL 633 (718)
Q Consensus 556 ~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~-lp~~i~-~l~~L~~L~l~~~~i~~lp~~i~~L 633 (718)
..+++|+.|+|++|.+++ - .|..++.+++|++|+|++|.++. .|..+. ++++|++|+|++|.++.+|. +..+
T Consensus 117 ~~l~~L~~L~L~~N~l~~--~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l 190 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITM--L---RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVF 190 (487)
T ss_dssp CCCSSCEEEECCSSCCCS--G---GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCC
T ss_pred cccCCCCEEECCCCCCCC--C---CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccC
Confidence 346789999999999984 3 56789999999999999999996 455665 79999999999999998875 4469
Q ss_pred cccceeeec----ccCcccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEe
Q 047642 634 HQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQ 705 (718)
Q Consensus 634 ~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~ 705 (718)
++|++|+++ ..+|+.++.+++|+.|++.+|. ...|..++.+++|+.|++++| ...+|..+..+++|+.|+++
T Consensus 191 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999992 4466778899999999999988 667788999999999999999 35778889999999988885
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=6.7e-14 Score=145.21 Aligned_cols=170 Identities=16% Similarity=0.085 Sum_probs=127.6
Q ss_pred cccCcEeeeecCCccchhhhhhhhhc--cCCceEEEEEecCCcccccccccccchhhhhc-----ccccEEeeccCCccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLC--SSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL-----IHLRYFGFKCNSLVE 602 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l-----~~L~~L~l~~~~l~~ 602 (718)
+++|+.|.+.++.... ..+..+ ..+++|+.|+|++|.++ . +|..++.+ ++|++|+|++|.+..
T Consensus 94 l~~L~~L~L~~n~l~~----~~~~~~~~~~l~~L~~L~Ls~N~l~---~---~~~~~~~l~~~~~~~L~~L~L~~N~l~~ 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG----TAPPPLLEATGPDLNILNLRNVSWA---T---RDAWLAELQQWLKPGLKVLSIAQAHSLN 163 (312)
T ss_dssp TSCCCEEEEEEEBCBS----CCCCCSSSCCSCCCSEEEEESCBCS---S---SSSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred cCCccEEEccCCcccc----hhHHHHHHhcCCCccEEEccCCCCc---c---hhHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence 6788899988887632 233333 78889999999999988 5 77778887 899999999999988
Q ss_pred cc-ccccccCCCcEEEecCccccc---cChhh--ccccccceeeec-ccC------ccc-CCCccccccccceecc--cc
Q 047642 603 FP-RSIGNLQCLKTMVASGNSCWK---LPSQI--SKLHQLRHLIAR-PLG------HLQ-VSTLTNLQTLKYVNFQ--QW 666 (718)
Q Consensus 603 lp-~~i~~l~~L~~L~l~~~~i~~---lp~~i--~~L~~L~~L~l~-~~~------p~~-~~~l~~L~~L~~~~~~--~~ 666 (718)
+| ..++++++|++|++++|.+.. +|..+ +++++|++|+++ ..+ +.. +..+++|+.|++..|. +.
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 77 678889999999999987653 45555 788999999882 222 111 2466788888888887 22
Q ss_pred c-hHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 667 D-AVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 667 ~-~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
. ...+..+++|+.|++++| ...+|..+. ++|++|+|++|...+
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCS
T ss_pred cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCC
Confidence 2 245667889999999988 556676665 789999999987755
No 85
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=1.6e-13 Score=158.36 Aligned_cols=157 Identities=20% Similarity=0.125 Sum_probs=97.3
Q ss_pred CceeEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
..++++.+..+.......... ...|+.+.+............++..+..++.|+.|+|++|.+. . +|..++.+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~---~---l~~~~~~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF---N---ISANIFKY 246 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCS---C---CCGGGGGC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC---C---CChhhcCC
Confidence 456777776455444221111 3334444333322211112345677889999999999999988 6 89889999
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceec
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
++|++|+|++|.|+.+|..+++|++|++|+|++|.++.+|..|++|++|++|+++ ..+|..++.|++|+.|++.+|
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999982 567888999999999999888
Q ss_pred c--ccchHHh
Q 047642 664 Q--QWDAVDA 671 (718)
Q Consensus 664 ~--~~~~~~l 671 (718)
. +..|..+
T Consensus 327 ~l~~~~p~~~ 336 (727)
T 4b8c_D 327 PLEKQFLKIL 336 (727)
T ss_dssp CCCSHHHHHH
T ss_pred ccCCCChHHH
Confidence 7 3444443
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=1.6e-13 Score=142.61 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=139.6
Q ss_pred CceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI 588 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~ 588 (718)
...+.+.+..+.+.... ..++|+.|.+.++.... .. ...+++|+.|++++|.+++ - .|..++.++
T Consensus 80 ~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~----~~---~~~~~~L~~L~l~~N~l~~--~---~~~~~~~l~ 144 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL---VGPSIETLHAANNNISR----VS---CSRGQGKKNIYLANNKITM--L---RDLDEGCRS 144 (317)
T ss_dssp TTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCSE----EE---ECCCSSCEEEECCSSCCCS--G---GGBCTGGGS
T ss_pred CCCCEEECcCCcccccc---CCCCcCEEECCCCccCC----cC---ccccCCCCEEECCCCCCCC--c---cchhhhccC
Confidence 34455555543333211 13556666665555432 11 2346789999999999983 2 345789999
Q ss_pred cccEEeeccCCccccc-ccc-cccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCcccccccccee
Q 047642 589 HLRYFGFKCNSLVEFP-RSI-GNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVN 662 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp-~~i-~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~ 662 (718)
+|++|++++|.++.++ ..+ ..+++|++|++++|.++.+|.. ..+++|++|+++ ..+|..+..+++|+.|++.+
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence 9999999999999764 445 4789999999999999998754 459999999992 44567788999999999998
Q ss_pred cc-ccchHHhcccCCCCeEEEeec--c-ccHHHHhhccCCCCeEEEeeCC
Q 047642 663 FQ-QWDAVDARNLINLQELEIREI--P-YTNMNFILQVNSLRSLTLQTDT 708 (718)
Q Consensus 663 ~~-~~~~~~l~~l~~L~~L~l~~~--~-~~~~~~l~~l~~L~~L~l~~~~ 708 (718)
|. ...|..+..+++|+.|++++| . ...+..+..+++|+.|++++|+
T Consensus 224 N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 88 667778999999999999999 3 5788899999999999998553
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=2.6e-13 Score=139.10 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=124.4
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
+..+++|+.|++++|.+. . +| .++.+++|++|++++|.++.+|+ +.++++|++|++++|.++.+|. +++++
T Consensus 42 ~~~l~~L~~L~l~~~~i~---~---~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK---S---VQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCC---C---CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred hhhcCcccEEEccCCCcc---c---Ch-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 346788999999999998 5 65 48999999999999999999987 9999999999999999999875 99999
Q ss_pred ccceeeecc---cCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 635 QLRHLIARP---LGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 635 ~L~~L~l~~---~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+|++|+++. .-...+..+++|+.|++..+.-.....++.+++|+.|++++| ...++. +..+++|+.|+|++|...
T Consensus 113 ~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 999999931 123467888999999998888333378999999999999999 444444 999999999999998764
Q ss_pred C
Q 047642 711 N 711 (718)
Q Consensus 711 ~ 711 (718)
.
T Consensus 192 ~ 192 (291)
T 1h6t_A 192 D 192 (291)
T ss_dssp B
T ss_pred C
Confidence 4
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.40 E-value=8.3e-12 Score=131.54 Aligned_cols=291 Identities=14% Similarity=0.125 Sum_probs=167.7
Q ss_pred CCCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC------CHHHH
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY------TTRDL 231 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~ 231 (718)
..+..|+||+++++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHH
Confidence 34567999999999999988753 589999999999999999999842 1 6777765432 55666
Q ss_pred HHHHHHHhcCC-------------cccchHHhhhcCHHHHHHHHHHHhcC-ceEEEEEecCCChhh---------hhHHH
Q 047642 232 LQKTIKSFQKP-------------KIEDLELMERMTEEDLELHLYEFLEG-RRYLVVVDDIWHKSA---------WESLR 288 (718)
Q Consensus 232 l~~i~~~l~~~-------------~~~~~~~~~~~~~~~l~~~l~~~L~~-k~~LlVLDdv~~~~~---------~~~l~ 288 (718)
+..+...+... .... ......+..++...+.+.... ++++|||||++.... +..+.
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLT-LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGT-SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEeccee-eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 66666655420 0000 000123455666666666543 389999999976432 23333
Q ss_pred hhCCCCCCCcEEEEEecchhh-hhh---------cC-CCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHH
Q 047642 289 RAFPDNGNGSRIVITTRNEPV-AMI---------TD-EKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKL 357 (718)
Q Consensus 289 ~~l~~~~~gsriivTTR~~~v-~~~---------~~-~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~ 357 (718)
..... ..+.++|+|++.... ... .. .....+++.+|+.+|+.+++....-..... .+ .+.
T Consensus 157 ~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-----~~---~~~ 227 (350)
T 2qen_A 157 YAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-----VP---ENE 227 (350)
T ss_dssp HHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-----CC---HHH
T ss_pred HHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-----CC---HHH
Confidence 22221 247889999887653 211 01 111478999999999999998643211110 11 235
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhc--ccc----CCCCchHhHHHhcccCC---ChhhHHHHhhccCCCCCCeecHHHHH
Q 047642 358 GREMVEKCREEIPHEWHTVKNHLWW--HLT----QDSDHVSPILALSYDEL---PYQLKSCFLYLSLFPEDSLIDTEKLI 428 (718)
Q Consensus 358 ~~~I~~~c~~~~~~~w~~~~~~~~~--~~~----~~~~~i~~~l~~sy~~L---~~~~k~cfl~la~Fp~~~~i~~~~li 428 (718)
...|...|++ .+.....+...... ... ...+.+...+.-.+..+ ++..+..+..+|+ + ..+...+.
T Consensus 228 ~~~i~~~tgG-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~ 302 (350)
T 2qen_A 228 IEEAVELLDG-IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIR 302 (350)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHH
Confidence 5667777753 23222222221100 000 00001111122222333 7788999999988 2 13444444
Q ss_pred HHHHHcCCcCCCCCCHHHHHHHHHHHHhhccccchhhccCCcEeEEEe-CHHHHHHHH
Q 047642 429 RLWIAEGFIPEEEQDMENVAEEYLKELIDRSMIQIAERYLDKVKTCRI-HDLIRELAI 485 (718)
Q Consensus 429 ~~W~a~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~m-Hdlv~d~a~ 485 (718)
....+.. .+.+ ......+++.|.+.++|.... ..|++ |++++++.+
T Consensus 303 ~~~~~~~----~~~~-~~~~~~~l~~L~~~gli~~~~------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKG----TKIP-EPRLYALLENLKKMNWIVEED------NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTT----CCCC-HHHHHHHHHHHHHTTSEEEET------TEEEESSHHHHHHHT
T ss_pred HHHHHHh----CCCC-HHHHHHHHHHHHhCCCEEecC------CEEEEecHHHHHHHc
Confidence 4332210 0112 344778999999999997652 24554 788887753
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=3.1e-13 Score=136.34 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=64.2
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... ++ .+..+++|+.|++++|.++ . +|. ++.+++|++|++++|.++.+|....
T Consensus 40 l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~---~---~~~-l~~l~~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQIS---D---LSP-LKDLTKLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp HTTCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCC---C---CGG-GTTCSSCCEEECCSSCCSCCTTCCC-
T ss_pred cCcCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccC---C---Chh-hccCCCCCEEECCCCccCCcCcccc-
Confidence 4555555555544321 11 3444555555555555555 3 443 5555555555555555555553222
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 685 (718)
.+|++|++++|.++.+| .++++++|++|+++ ..++ .+..+++|+.|++.+|.-.....+..+++|+.|++++|
T Consensus 106 -~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp -SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred -CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 55555555555555544 35555555555541 1111 23344444444444443111133444444444444444
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=3e-13 Score=144.78 Aligned_cols=202 Identities=15% Similarity=0.054 Sum_probs=147.7
Q ss_pred CCceeEEEeecCCcccc---ccc---------cccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccc
Q 047642 508 TSLTRRQVIPSGNMKYV---SLV---------HFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSG 575 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~---~~~---------~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 575 (718)
....+.+.+..+....+ .+. ..+++|+.|.+.++.........++..+..+++|+.|+|++|.+++
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-- 136 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP-- 136 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH--
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH--
Confidence 45677788875433221 111 1268899999998887543344566778889999999999999863
Q ss_pred c-ccccchhhhhc---------ccccEEeeccCCcc--ccc---ccccccCCCcEEEecCcccc------ccChhhcccc
Q 047642 576 K-VLRLTDSIGKL---------IHLRYFGFKCNSLV--EFP---RSIGNLQCLKTMVASGNSCW------KLPSQISKLH 634 (718)
Q Consensus 576 ~-l~~~p~~i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~~L~l~~~~i~------~lp~~i~~L~ 634 (718)
. ...++..+..+ ++|++|+|++|.+. .+| ..+.++++|++|++++|.+. -+|..+.+++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 2 00133344455 89999999999986 455 46778899999999999887 2444788999
Q ss_pred ccceeeec---------ccCcccCCCccccccccceecc-c-----cchHHh--cccCCCCeEEEeec-cc-----cHHH
Q 047642 635 QLRHLIAR---------PLGHLQVSTLTNLQTLKYVNFQ-Q-----WDAVDA--RNLINLQELEIREI-PY-----TNMN 691 (718)
Q Consensus 635 ~L~~L~l~---------~~~p~~~~~l~~L~~L~~~~~~-~-----~~~~~l--~~l~~L~~L~l~~~-~~-----~~~~ 691 (718)
+|++|+++ ..+|..+..+++|+.|++.+|. . ..+..+ +.+++|+.|++++| .. .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 99999982 2246678888999999998887 1 245666 44899999999999 33 3788
Q ss_pred Hh-hccCCCCeEEEeeCCCCC
Q 047642 692 FI-LQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 692 ~l-~~l~~L~~L~l~~~~~~~ 711 (718)
.+ .++++|++|+|++|...+
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhcCCCceEEEccCCcCCc
Confidence 87 668999999999988765
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=1.1e-12 Score=148.00 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=42.4
Q ss_pred Cccccccccceecc-ccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 651 TLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 651 ~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
.+++|+.|++.+|. ...|. .+++|+.|++++| ...+|..+.++++|+.|+|++|.+.+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 44566666666665 33333 5677888888888 55778889999999999999987754
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.38 E-value=6.7e-13 Score=145.03 Aligned_cols=136 Identities=21% Similarity=0.140 Sum_probs=105.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
+++|+.|.+.++.... ++ .+..+++|++|++++|.++ . +| ++.+++|++|++++|.++.+| +++
T Consensus 41 l~~L~~L~Ls~n~l~~-----~~-~l~~l~~L~~L~Ls~n~l~---~---~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-----MT-GIEKLTGLTKLICTSNNIT---T---LD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECCSSCCCC-----CT-TGGGCTTCSEEECCSSCCS---C---CC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cCCCCEEEccCCCccc-----Ch-hhcccCCCCEEEccCCcCC---e---Ec--cccCCCCCEEECcCCCCceee--cCC
Confidence 7899999999987643 23 5788999999999999998 5 65 899999999999999999986 899
Q ss_pred cCCCcEEEecCccccccChhhccccccceeeec-ccC-cccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 610 LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR-PLG-HLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~-~~~-p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
+++|++|++++|.++.+| ++++++|++|+++ ..+ -..++.+++|+.|++..+. +.. .++.+++|+.|++++|
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 999999999999999987 8999999999982 111 1125666666666666553 211 3455555555555555
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=9.6e-13 Score=126.54 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=90.3
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccc-cccccc
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE-FPRSIG 608 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~-lp~~i~ 608 (718)
+++++.|.+.++... .++ .+..+++|+.|++++|.++ . ++.+..+++|++|++++|.++. .|..++
T Consensus 43 l~~L~~L~l~~n~i~-----~l~-~l~~l~~L~~L~l~~n~~~---~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVT-----DLT-GIEYAHNIKDLTINNIHAT---N----YNPISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCS-----CCT-TGGGCTTCSEEEEESCCCS---C----CGGGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred cCCccEEeccCCCcc-----ChH-HHhcCCCCCEEEccCCCCC---c----chhhhcCCCCCEEEeECCccCcccChhhc
Confidence 556666666665542 222 3556667777777777655 2 3356667777777777777664 566667
Q ss_pred ccCCCcEEEecCccccc-cChhhccccccceeeeccc----CcccCCCccccccccceeccccchHHhcccCCCCeEEEe
Q 047642 609 NLQCLKTMVASGNSCWK-LPSQISKLHQLRHLIARPL----GHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIR 683 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~----~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~ 683 (718)
++++|++|++++|.++. .|..++++++|++|+++.. ..+.+..+++|+.|++..|.-.....+..+++|+.|+++
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEEC
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEee
Confidence 77777777777776663 5556677777777766211 112456666677777666662222277888889999988
Q ss_pred ec
Q 047642 684 EI 685 (718)
Q Consensus 684 ~~ 685 (718)
+|
T Consensus 190 ~N 191 (197)
T 4ezg_A 190 SQ 191 (197)
T ss_dssp BC
T ss_pred Cc
Confidence 87
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=6.1e-13 Score=130.31 Aligned_cols=139 Identities=16% Similarity=0.204 Sum_probs=107.8
Q ss_pred cEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc--hhhhhcccccEEeeccCCcccccc-ccccc
Q 047642 534 RSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT--DSIGKLIHLRYFGFKCNSLVEFPR-SIGNL 610 (718)
Q Consensus 534 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l 610 (718)
+.+.+.++... .+|..+ ...++.|+|++|.++ . ++ ..++.+++|++|+|++|.|+.+|+ .+.++
T Consensus 14 ~~l~~s~n~l~-----~iP~~~--~~~~~~L~L~~N~l~---~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQKLN-----KIPEHI--PQYTAELRLNNNEFT---V---LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80 (220)
T ss_dssp TEEECCSSCCS-----SCCSCC--CTTCSEEECCSSCCC---E---ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEeEeCCCCcc-----cCccCC--CCCCCEEEcCCCcCC---c---cCchhhhccCCCCCEEECCCCcCCEECHHHhCCC
Confidence 46777776653 233322 234679999999998 4 53 347899999999999999998876 68899
Q ss_pred CCCcEEEecCccccccChh-hccccccceeeec-----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEE
Q 047642 611 QCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEI 682 (718)
Q Consensus 611 ~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l 682 (718)
++|++|+|++|.++.+|.. |.++++|++|+++ ...|..+..+++|+.|++.+|. +..+..|..+++|+.|++
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 9999999999999988765 8889999999882 3346667888888888888777 444777888888888888
Q ss_pred eec
Q 047642 683 REI 685 (718)
Q Consensus 683 ~~~ 685 (718)
++|
T Consensus 161 ~~N 163 (220)
T 2v70_A 161 LAN 163 (220)
T ss_dssp CSC
T ss_pred cCc
Confidence 888
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=1.9e-13 Score=141.59 Aligned_cols=191 Identities=15% Similarity=0.075 Sum_probs=140.2
Q ss_pred ceeEEEeecCCccccccc----cc-cccCcEeeeecCCccchhhhhhhhhc--cCCceEEEEEecCCcccccccccccc-
Q 047642 510 LTRRQVIPSGNMKYVSLV----HF-YPRLRSLLFFNPDRESINIKHLQTLC--SSLRFLRVLDLEDTRIEHSGKVLRLT- 581 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~----~~-~~~l~~L~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~l~~~p- 581 (718)
..+++.+........... .. +++|+.|.+.++.... ..+..+ ..+++|+.|+|++|.+++ . .|
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~--~---~~~ 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWAT--G---RSW 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSS--T---TSS
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccc--h---hhh
Confidence 456677764444321111 11 5779999999987643 334444 789999999999999884 3 33
Q ss_pred ---hhhhhcccccEEeeccCCccccc-ccccccCCCcEEEecCccccc---cChh--hccccccceeeec-ccC---ccc
Q 047642 582 ---DSIGKLIHLRYFGFKCNSLVEFP-RSIGNLQCLKTMVASGNSCWK---LPSQ--ISKLHQLRHLIAR-PLG---HLQ 648 (718)
Q Consensus 582 ---~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~i~~---lp~~--i~~L~~L~~L~l~-~~~---p~~ 648 (718)
..+..+++|++|+|++|.+..+| ..++++++|++|++++|.+.. +|.. ++++++|++|+++ ..+ +..
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 215 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV 215 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence 34467899999999999999776 467899999999999998753 4333 4789999999983 222 221
Q ss_pred ----CCCccccccccceecc--ccchHHhccc---CCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 649 ----VSTLTNLQTLKYVNFQ--QWDAVDARNL---INLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 649 ----~~~l~~L~~L~~~~~~--~~~~~~l~~l---~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
++.+++|++|++..|. ...|..++.+ ++|+.|++++| ...+|..+. ++|+.|+|++|+..+
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS
T ss_pred HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC
Confidence 3567899999998887 3446667766 69999999999 556676664 799999999988765
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=4.7e-13 Score=150.65 Aligned_cols=147 Identities=17% Similarity=0.175 Sum_probs=125.3
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
+..+++|+.|++++|.+. . +| .++.|++|++|+|++|.+..+|+ ++++++|+.|+|++|.+..+| .+..|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~---~---l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK---S---VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC---C---CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcCCCCC---C---Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCC
Confidence 356788999999999998 5 65 69999999999999999999987 999999999999999999987 699999
Q ss_pred ccceeeec---ccCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCC
Q 047642 635 QLRHLIAR---PLGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 635 ~L~~L~l~---~~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
+|++|+++ ...+..+..|++|+.|.+..|.-.....++.+++|+.|+|++| ...+++ +..+++|+.|+|++|.+.
T Consensus 110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 99999992 2223468889999999999888333378999999999999999 334433 999999999999999775
Q ss_pred C
Q 047642 711 N 711 (718)
Q Consensus 711 ~ 711 (718)
+
T Consensus 189 ~ 189 (605)
T 1m9s_A 189 D 189 (605)
T ss_dssp B
T ss_pred C
Confidence 4
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=9.6e-13 Score=128.89 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=98.8
Q ss_pred ceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCcccc-cccccccCCCcEEEecCccccccChh-hccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEF-PRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQ 635 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~ 635 (718)
+.|+.|++++|.++ . +| ..+..+++|++|+|++|.++.+ |..+.++++|++|+|++|.++.+|.. |..+++
T Consensus 32 ~~l~~L~l~~n~i~---~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNTIK---V---IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSCCC---E---ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCcCC---C---cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 57899999999998 5 55 4788999999999999999977 66789999999999999999999877 578999
Q ss_pred cceeeec-----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 636 LRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 636 L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
|++|+++ ...|..+..+++|+.|++.+|. ...+..|..+++|+.|++++|
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999882 2335567788888888888777 334455778888888888887
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=4.1e-13 Score=130.39 Aligned_cols=155 Identities=21% Similarity=0.147 Sum_probs=98.1
Q ss_pred ccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hhhhcccccEEeeccCCccccccc-
Q 047642 529 FYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SIGKLIHLRYFGFKCNSLVEFPRS- 606 (718)
Q Consensus 529 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~- 606 (718)
+.++++.|.+.++.... ..+..|..+++|++|++++|.++ . +|. .+..+++|++|+|++|.++.+|..
T Consensus 26 ~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~---~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQ---S---LPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC---C---CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCcEEEcCCCccCc----CChhhhcccccCcEEECCCCccC---c---cChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 35667777777766532 33445667777777777777776 4 443 356777777777777777777665
Q ss_pred ccccCCCcEEEecCccccccChh-hccccccceeeec----ccCcc-cCCCccccccccceeccccchHHhcccCCCCeE
Q 047642 607 IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHL-QVSTLTNLQTLKYVNFQQWDAVDARNLINLQEL 680 (718)
Q Consensus 607 i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~-~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L 680 (718)
+.++++|++|++++|.++.+|.. +.++++|++|++. ..+|. .+..+++|+.|++.+|. ..+.+++|+.|
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~~~l~~L 170 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-----WDCTCPGIRYL 170 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-----BCCCTTTTHHH
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-----eecCCCCHHHH
Confidence 46777777777777777777665 5677777777762 12232 25566666666666553 11334556666
Q ss_pred EEeec--cccHHHHhhccCC
Q 047642 681 EIREI--PYTNMNFILQVNS 698 (718)
Q Consensus 681 ~l~~~--~~~~~~~l~~l~~ 698 (718)
+++.| .+.+|.+++.++.
T Consensus 171 ~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHhCCceeeccCccccC
Confidence 66655 5566666665544
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=3e-13 Score=144.89 Aligned_cols=203 Identities=15% Similarity=0.113 Sum_probs=149.1
Q ss_pred CCceeEEEeecCCccccccc----cc--cccCcEeeeecCCccch------hhhhhhhhccCCceEEEEEecCCcccccc
Q 047642 508 TSLTRRQVIPSGNMKYVSLV----HF--YPRLRSLLFFNPDRESI------NIKHLQTLCSSLRFLRVLDLEDTRIEHSG 575 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~----~~--~~~l~~L~~~~~~~~~~------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 575 (718)
....+.+.+..+.+....+. .+ +++|+.|.+.++..... ....+...+..+++|++|+|++|.+++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~- 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT- 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT-
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH-
Confidence 34578888886665543221 12 78999999988754321 1222334467899999999999998731
Q ss_pred cccccchhhhhcccccEEeeccCCccc-----cccccccc---------CCCcEEEecCcccc--ccC---hhhcccccc
Q 047642 576 KVLRLTDSIGKLIHLRYFGFKCNSLVE-----FPRSIGNL---------QCLKTMVASGNSCW--KLP---SQISKLHQL 636 (718)
Q Consensus 576 ~l~~~p~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~i~--~lp---~~i~~L~~L 636 (718)
....+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|.++ .+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 111267788999999999999999873 44445555 89999999999886 455 567889999
Q ss_pred ceeeec-c---------cCcccCCCccccccccceecc------ccchHHhcccCCCCeEEEeec--c----ccHHHHhh
Q 047642 637 RHLIAR-P---------LGHLQVSTLTNLQTLKYVNFQ------QWDAVDARNLINLQELEIREI--P----YTNMNFIL 694 (718)
Q Consensus 637 ~~L~l~-~---------~~p~~~~~l~~L~~L~~~~~~------~~~~~~l~~l~~L~~L~l~~~--~----~~~~~~l~ 694 (718)
++|+++ . ..|..+..+++|+.|++..|. ...+..+..+++|+.|++++| . ..++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999982 1 123377889999999998886 235678899999999999999 2 23567774
Q ss_pred c--cCCCCeEEEeeCCCCC
Q 047642 695 Q--VNSLRSLTLQTDTAFN 711 (718)
Q Consensus 695 ~--l~~L~~L~l~~~~~~~ 711 (718)
. +++|++|+|++|....
T Consensus 270 ~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCSSCCCCEEECCSSCCBH
T ss_pred hccCCCeEEEECcCCcCCH
Confidence 4 8999999999988754
No 100
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=2.9e-11 Score=129.29 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=168.6
Q ss_pred CCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCcccc----CCCceEEEEEecCCCCHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVK----GGFDCRAWVCVTQEYTTRDLLQ 233 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~ 233 (718)
+..++||+++++++..++... ......+.|+|++|+||||||+.+++...-. +.-...+|++.....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 367999999999999988543 3345689999999999999999999842111 1012356788778888889999
Q ss_pred HHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh--cCceEEEEEecCCChhh----hhHHH---hhCCCC--CCCcEEEE
Q 047642 234 KTIKSFQKPKIEDLELMERMTEEDLELHLYEFL--EGRRYLVVVDDIWHKSA----WESLR---RAFPDN--GNGSRIVI 302 (718)
Q Consensus 234 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVLDdv~~~~~----~~~l~---~~l~~~--~~gsriiv 302 (718)
.++.+++..... ...+..++...+.+.+ .+++.+|||||++.... .+.+. ...... ..+..+|.
T Consensus 98 ~l~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 98 AIAEAVGVRVPF-----TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHSCCCCS-----SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHhCCCCCC-----CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 999998653221 2233455566666666 35689999999986432 22222 222211 44567888
Q ss_pred Eecchhhhhhc------CCCCceeeccCCCHHhHHHHHHhhh---CCCCCCCCcCCCCchHHHHHHHHHHHhcc--CChh
Q 047642 303 TTRNEPVAMIT------DEKNFVYKLRFLNQEESWKLFCKKA---FPDTADGQATVCSPGLEKLGREMVEKCRE--EIPH 371 (718)
Q Consensus 303 TTR~~~v~~~~------~~~~~~~~l~~L~~~es~~Lf~~~a---f~~~~~~~~~~~~~~l~~~~~~I~~~c~~--~~~~ 371 (718)
||+........ ......+.+++++.++..+++...+ +.... .+++ ....+++.++. .++.
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~------~~~~---~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV------LDPD---VVPLCAALAAREHGDAR 243 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT------BCSS---HHHHHHHHHHSSSCCHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC------CCHH---HHHHHHHHHHHhccCHH
Confidence 88766321111 0111478999999999999998774 32211 1222 23334444431 2222
Q ss_pred HHHHHHHHhhccc---c-C--CCCch--------HhHHHhcccCCChhhHHHHhhcc-CCCCCCeecHHHHHHHHHH---
Q 047642 372 EWHTVKNHLWWHL---T-Q--DSDHV--------SPILALSYDELPYQLKSCFLYLS-LFPEDSLIDTEKLIRLWIA--- 433 (718)
Q Consensus 372 ~w~~~~~~~~~~~---~-~--~~~~i--------~~~l~~sy~~L~~~~k~cfl~la-~Fp~~~~i~~~~li~~W~a--- 433 (718)
.-..+++...... . . ..+.+ ...+.-++..||++.+..++.++ ++-....+....+.+....
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 2222222211000 0 0 01111 12345566889998888877777 4432234555544443321
Q ss_pred -cCCcCCCCCCHHHHHHHHHHHHhhccccchhh
Q 047642 434 -EGFIPEEEQDMENVAEEYLKELIDRSMIQIAE 465 (718)
Q Consensus 434 -~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~ 465 (718)
.| . .......+..+++.|...+++....
T Consensus 324 ~~~-~---~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 324 TLG-L---EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HTT-C---CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hcC-C---CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 22 1 1122456788999999999998754
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.35 E-value=7.6e-13 Score=151.33 Aligned_cols=190 Identities=20% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhh
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSI 584 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i 584 (718)
+..+++|.++.|.+..+....+ +++|+.|.+.+|.... ..+..|.++++|++|+|++|.++ . +| ..|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~---~---l~~~~f 120 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQ---S---LALGAF 120 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCC---E---ECGGGG
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCC---C---CCHHHh
Confidence 4456666666665555444444 6666666666665422 23445666666666666666666 3 44 345
Q ss_pred hhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccc--cChhhccccccceeeec-----ccCcccCCCccccc
Q 047642 585 GKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWK--LPSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQ 656 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~ 656 (718)
+++++|++|+|++|+++.+|+. ++++++|++|++++|.++. +|..++++++|++|+++ ...|..+..+.++.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 6666666666666666666543 5666666666666666553 35556666666666662 11233333333333
Q ss_pred ccc----ceecc-ccchHHhcccCCCCeEEEeec---cccHHHHhhccCCCCeEEEeeC
Q 047642 657 TLK----YVNFQ-QWDAVDARNLINLQELEIREI---PYTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 657 ~L~----~~~~~-~~~~~~l~~l~~L~~L~l~~~---~~~~~~~l~~l~~L~~L~l~~~ 707 (718)
.+. +..+. ...+........+..|++.++ ....+..+..+..|+...+..+
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccc
Confidence 221 11111 122222223334556666666 2334456777777777666543
No 102
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=5.8e-11 Score=127.09 Aligned_cols=312 Identities=14% Similarity=0.119 Sum_probs=184.5
Q ss_pred CceeeccccHHHHHHHHhcC----CCCcEEEEEEecCCchHHHHHHHHhcCccccCCC-ceEEEEEecCCCCHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD----EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF-DCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~l~~i 235 (718)
..++||+++++++..++... .+..+.+.|+|++|+||||||+.+++. ..... ...+|++.+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999988752 222348999999999999999999984 33321 246677777777888899999
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCCh--hhhhHHHhhCCCCC----CCcEEEEEecch
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHK--SAWESLRRAFPDNG----NGSRIVITTRNE 307 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~--~~~~~l~~~l~~~~----~gsriivTTR~~ 307 (718)
+..++..... ...+..++...+...+. +++.+|||||++.. +....+...+.... .+..+|+||+..
T Consensus 95 ~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 95 ARSLNIPFPR-----RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHTTCCCCS-----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHhCccCCC-----CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 9888653221 12234455555555553 56889999999764 44566665554322 467788888876
Q ss_pred hhhhhcCC------CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc--------cCChhHH
Q 047642 308 PVAMITDE------KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR--------EEIPHEW 373 (718)
Q Consensus 308 ~v~~~~~~------~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~--------~~~~~~w 373 (718)
........ ....+.+++++.++..+++...+....... . .+ .+....|++.+. ...+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~-~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~ 243 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--S-YS---EDILQMIADITGAQTPLDTNRGDARLA 243 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--S-SC---HHHHHHHHHHHSBSSTTCTTSCCHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--C-CC---HHHHHHHHHHHhhcccCCCCCCcHHHH
Confidence 54332211 113689999999999999987643200000 0 12 235556666663 2233333
Q ss_pred HHHHHHhhccc-----cC-CCCchHhH--------HHhcccCCChhhHHHHhhccCCC---CCCeecHHHHHHHHHH---
Q 047642 374 HTVKNHLWWHL-----TQ-DSDHVSPI--------LALSYDELPYQLKSCFLYLSLFP---EDSLIDTEKLIRLWIA--- 433 (718)
Q Consensus 374 ~~~~~~~~~~~-----~~-~~~~i~~~--------l~~sy~~L~~~~k~cfl~la~Fp---~~~~i~~~~li~~W~a--- 433 (718)
..+++...... .. ..+.+..+ +.-.+..||.+.+.++..++.+. .+..+....+...+..
T Consensus 244 ~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 244 IDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 33333221100 00 11112222 22235668888888888787654 2225666666665533
Q ss_pred -cCCcCCCCCCHHHHHHHHHHHHhhccccchhhc--cC---CcEeEEE----eCHHHHHHHHHhhh
Q 047642 434 -EGFIPEEEQDMENVAEEYLKELIDRSMIQIAER--YL---DKVKTCR----IHDLIRELAIKKAR 489 (718)
Q Consensus 434 -~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~--~~---~~~~~~~----mHdlv~d~a~~~~~ 489 (718)
.|.. ..+ ......++++|.+.++|..... .. |+...++ .|+++..+...+..
T Consensus 324 ~~~~~---~~~-~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 324 EYGER---PRV-HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp HTTCC---CCC-HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred HcCCC---CCC-HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 1211 111 3447789999999999988543 11 2222233 44666655554443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=1.9e-12 Score=127.66 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=110.2
Q ss_pred CcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccc-ccccC
Q 047642 533 LRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQ 611 (718)
Q Consensus 533 l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~ 611 (718)
...+.+.++... .+|..+ .++|++|+|++|.+++ - .|..+..+++|++|+|++|.|+.+|.. +.+++
T Consensus 21 ~~~v~c~~~~l~-----~ip~~~--~~~L~~L~Ls~n~i~~--~---~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-----SVPAGI--PTNAQILYLHDNQITK--L---EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp TTEEECTTSCCS-----SCCSCC--CTTCSEEECCSSCCCC--C---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEeEccCCCcC-----ccCCCC--CCCCCEEEcCCCccCc--c---CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 455666655542 233322 3789999999999984 2 467889999999999999999999866 58899
Q ss_pred CCcEEEecCccccccChh-hccccccceeeec----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEee
Q 047642 612 CLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIRE 684 (718)
Q Consensus 612 ~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~ 684 (718)
+|++|+|++|.++.+|.. +..+++|++|+++ ..+|..+..+++|+.|++.+|. ...+..|..+++|+.|++++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 999999999999998876 6889999999982 4567777888888888888777 33335677888888888888
Q ss_pred c
Q 047642 685 I 685 (718)
Q Consensus 685 ~ 685 (718)
|
T Consensus 169 N 169 (229)
T 3e6j_A 169 N 169 (229)
T ss_dssp S
T ss_pred C
Confidence 7
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=2.1e-13 Score=143.03 Aligned_cols=190 Identities=15% Similarity=0.074 Sum_probs=151.1
Q ss_pred ceeEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcc
Q 047642 510 LTRRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI 588 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~ 588 (718)
..+.+.+..+.+....+..+ +++|+.|.+.++.... ..++..+..+++|+.|++++|.+++ . .|..++.++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~---~~~~~~~~~~~~L~~L~L~~~~l~~--~---~~~~l~~~~ 142 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSD--P---IVNTLAKNS 142 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCH--H---HHHHHTTCT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCH---HHHHHHHhhCCCCCEEeCcCcccCH--H---HHHHHhcCC
Confidence 34555555444444333333 7899999999886532 2356778999999999999999885 5 788899999
Q ss_pred cccEEeeccC-Ccc--cccccccccCCCcEEEecCc-cccc--cChhhcccc-ccceeeecc--------cCcccCCCcc
Q 047642 589 HLRYFGFKCN-SLV--EFPRSIGNLQCLKTMVASGN-SCWK--LPSQISKLH-QLRHLIARP--------LGHLQVSTLT 653 (718)
Q Consensus 589 ~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~-~i~~--lp~~i~~L~-~L~~L~l~~--------~~p~~~~~l~ 653 (718)
+|++|++++| .++ .+|..+.++++|++|++++| .++. +|..+.+++ +|++|+++. .+|..+..++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 9999999998 687 47887899999999999999 8884 788899999 999999932 2345567889
Q ss_pred ccccccceecc---ccchHHhcccCCCCeEEEeecc---ccHHHHhhccCCCCeEEEeeC
Q 047642 654 NLQTLKYVNFQ---QWDAVDARNLINLQELEIREIP---YTNMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 654 ~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 707 (718)
+|+.|++.++. ...+..++.+++|+.|++++|. ......+.++++|+.|+|++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999998887 4567789999999999999983 222346889999999999998
No 105
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.4e-11 Score=129.79 Aligned_cols=287 Identities=10% Similarity=0.025 Sum_probs=166.1
Q ss_pred CceeeccccHHHHHHHHhc--CCCCcEEEEEEecCCchHHHHHHHHhcCcccc----CC--CceEEEEEecCCC-CHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLK--DEQQRFVISILGMGGLGKTTLARKLVNSTDVK----GG--FDCRAWVCVTQEY-TTRDL 231 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 231 (718)
..++||+++++++..++.. .....+.+.|+|++|+||||||+.+++...-. .. ....+|++..... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5699999999999988865 23345689999999999999999999842111 11 2346788777766 88888
Q ss_pred HHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhh--hhHH-HhhCCCCCCCcEEEEEecchh
Q 047642 232 LQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSA--WESL-RRAFPDNGNGSRIVITTRNEP 308 (718)
Q Consensus 232 l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~--~~~l-~~~l~~~~~gsriivTTR~~~ 308 (718)
+..++..+.+.... ....+...+...+.+.+..++.+|||||++.... +... ...+.....+..+|+||+...
T Consensus 100 ~~~l~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVP----KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCC----SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCC----CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 99998888432110 1122335566677778877666999999986432 1222 222221116788999998763
Q ss_pred hhhhcC-----CCCceeeccCCCHHhHHHHHHhhh---CCCCCCCCcCCCCchHHHHHHHHHHHhcc--CChhHHHHHHH
Q 047642 309 VAMITD-----EKNFVYKLRFLNQEESWKLFCKKA---FPDTADGQATVCSPGLEKLGREMVEKCRE--EIPHEWHTVKN 378 (718)
Q Consensus 309 v~~~~~-----~~~~~~~l~~L~~~es~~Lf~~~a---f~~~~~~~~~~~~~~l~~~~~~I~~~c~~--~~~~~w~~~~~ 378 (718)
...... -....+.+++++.++..++|...+ |.... .+++ ....|++.|+. .+...-..+++
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~------~~~~---~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGT------YDDE---ILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTS------CCSH---HHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCC------cCHH---HHHHHHHHHHhccCCHHHHHHHHH
Confidence 211110 111379999999999999999874 32211 2222 33445555541 22222222222
Q ss_pred HhhccccC----CCCchH--------hHHHhcccCCChhhHHHHhhccCCCCCCeecHHHHHHHHHHcCCcCCCCCCHHH
Q 047642 379 HLWWHLTQ----DSDHVS--------PILALSYDELPYQLKSCFLYLSLFPEDSLIDTEKLIRLWIAEGFIPEEEQDMEN 446 (718)
Q Consensus 379 ~~~~~~~~----~~~~i~--------~~l~~sy~~L~~~~k~cfl~la~Fp~~~~i~~~~li~~W~a~g~i~~~~~~~e~ 446 (718)
.......+ ..+.+. ..+.-++..|+++.+..+..++....+..+. +.....--..| + . .....
T Consensus 247 ~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~--~-~~~~~ 321 (384)
T 2qby_B 247 RAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q--K-PLSYR 321 (384)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C--C-CCCHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C--C-CCCHH
Confidence 21110000 111111 2355567889988888887777611101111 11111111122 1 1 11234
Q ss_pred HHHHHHHHHhhccccchhh
Q 047642 447 VAEEYLKELIDRSMIQIAE 465 (718)
Q Consensus 447 ~~~~~l~~L~~rsll~~~~ 465 (718)
....+++.|.+.+++....
T Consensus 322 ~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 5778999999999998754
No 106
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=3.1e-11 Score=127.48 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCC-----CCHHHHHH
Q 047642 159 GNEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQE-----YTTRDLLQ 233 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~l~ 233 (718)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||||++++.+. ... ..+|+.+... .+....+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHH
Confidence 44579999999999999 643 49999999999999999999984 222 2578877642 34455555
Q ss_pred HHHHHhcC-------------Cc-ccchHH----h-----hhcCHHHHHHHHHHHhcCceEEEEEecCCChh-----hhh
Q 047642 234 KTIKSFQK-------------PK-IEDLEL----M-----ERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS-----AWE 285 (718)
Q Consensus 234 ~i~~~l~~-------------~~-~~~~~~----~-----~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~-----~~~ 285 (718)
.+...+.. .. ....+. . ......++...+.+.-. ++++|||||++..+ +|.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 54443311 00 000000 0 01234445555544322 49999999997532 232
Q ss_pred HHHhhCCCCCCCcEEEEEecchhhhh-h---------cCCC-CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchH
Q 047642 286 SLRRAFPDNGNGSRIVITTRNEPVAM-I---------TDEK-NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGL 354 (718)
Q Consensus 286 ~l~~~l~~~~~gsriivTTR~~~v~~-~---------~~~~-~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l 354 (718)
.+...+.....+.++|+|++...... . .... ...+++.+|+.+|+.+++....-.... .....
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~------~~~~~ 232 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI------DFKDY 232 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC------CCCCH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC------CCCcH
Confidence 22222221224678999999765322 1 1111 257899999999999999874321111 11111
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHhhcc------ccCCCCc----hHhHHH-hccc--CCChhhHHHHhhccCCCCCCe
Q 047642 355 EKLGREMVEKCREEIPHEWHTVKNHLWWH------LTQDSDH----VSPILA-LSYD--ELPYQLKSCFLYLSLFPEDSL 421 (718)
Q Consensus 355 ~~~~~~I~~~c~~~~~~~w~~~~~~~~~~------~~~~~~~----i~~~l~-~sy~--~L~~~~k~cfl~la~Fp~~~~ 421 (718)
..|...|++ .+.....+...+... .....+. +..-+. +.++ .||+..+..+..+|+ +.
T Consensus 233 ----~~i~~~t~G-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~- 303 (357)
T 2fna_A 233 ----EVVYEKIGG-IPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG- 303 (357)
T ss_dssp ----HHHHHHHCS-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB-
T ss_pred ----HHHHHHhCC-CHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC-
Confidence 556666642 222222222111000 0000000 111111 2221 688899999999998 22
Q ss_pred ecHHHHHHHHH-HcCCcCCCCCCHHHHHHHHHHHHhhccccchhhccCCcEeEEE-eCHHHHHHH
Q 047642 422 IDTEKLIRLWI-AEGFIPEEEQDMENVAEEYLKELIDRSMIQIAERYLDKVKTCR-IHDLIRELA 484 (718)
Q Consensus 422 i~~~~li~~W~-a~g~i~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~-mHdlv~d~a 484 (718)
+...+....- ..|. .. .......+++.|.+.++|.... ..|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~----~~-~~~~~~~~L~~L~~~gli~~~~------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI----EI-SDSEIYNYLTQLTKHSWIIKEG------EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS----CC-CHHHHHHHHHHHHHTTSEEESS------SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhCCCEEecC------CEEEecCHHHHHhh
Confidence 3344332110 1121 01 1344778999999999997643 2466 478888764
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=3.4e-12 Score=123.88 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=127.7
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-h
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-S 583 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~ 583 (718)
.+...+++.+..+.+.......+ +++|+.|.+.++.... ..+..|..+++|++|++++|.++ . +|. .
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~---~---~~~~~ 95 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNLSTNQLQ---S---LPNGV 95 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCC---C---CCTTT
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc----cChhhcCCCCCcCEEECCCCcCC---c---cCHhH
Confidence 45578999999888776554444 8999999999987643 34566789999999999999998 5 664 4
Q ss_pred hhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeeecccCcccCCCccccccccce
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIARPLGHLQVSTLTNLQTLKYV 661 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~p~~~~~l~~L~~L~~~ 661 (718)
++.+++|++|++++|.++.+|+. +.++++|++|++++|.++.+|.. +.++++|++|++... ...+.+++|+.|...
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N--~~~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN--PWDCTCPGIRYLSEW 173 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC--CBCCCTTTTHHHHHH
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC--CeecCCCCHHHHHHH
Confidence 78999999999999999999876 68899999999999999998876 789999999998332 223566778888877
Q ss_pred ecc--ccchHHhcccCC
Q 047642 662 NFQ--QWDAVDARNLIN 676 (718)
Q Consensus 662 ~~~--~~~~~~l~~l~~ 676 (718)
.+. +..|..++.++.
T Consensus 174 ~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 174 INKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHCTTTBBCTTSSBCT
T ss_pred HHhCCceeeccCccccC
Confidence 766 678878877764
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=2.8e-12 Score=125.57 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=114.0
Q ss_pred EEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccE
Q 047642 513 RQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRY 592 (718)
Q Consensus 513 ~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~ 592 (718)
.+....+.+.. .+..+.++++.|.+.++.... ..+..|..+++|+.|+|++|.+++ - .|..+..+++|++
T Consensus 15 ~v~c~~~~l~~-iP~~l~~~l~~L~l~~n~i~~----i~~~~~~~l~~L~~L~Ls~N~i~~--~---~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLPETITEIRLEQNTIKV----IPPGAFSPYKKLRRIDLSNNQISE--L---APDAFQGLRSLNS 84 (220)
T ss_dssp EEECTTSCCSS-CCSSCCTTCCEEECCSSCCCE----ECTTSSTTCTTCCEEECCSSCCCE--E---CTTTTTTCSSCCE
T ss_pred EEEcCCCCcCc-CCCccCcCCCEEECCCCcCCC----cCHhHhhCCCCCCEEECCCCcCCC--c---CHHHhhCCcCCCE
Confidence 34444344444 333446789999999988643 345578899999999999999983 2 4788999999999
Q ss_pred EeeccCCcccccccc-cccCCCcEEEecCccccccC-hhhccccccceeeec----ccCc-ccCCCccccccccceecc
Q 047642 593 FGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLP-SQISKLHQLRHLIAR----PLGH-LQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 593 L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~L~~~~~~ 664 (718)
|+|++|.|+.+|+.+ .++++|++|+|++|.++.++ ..|..+++|++|+++ ..++ ..+..+++|+.|++.+|.
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999999999874 78999999999999999884 568999999999992 2333 457889999999998887
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=4.5e-14 Score=158.01 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=51.1
Q ss_pred cccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc
Q 047642 589 HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 589 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~ 664 (718)
.|++|+|++|.|+.+|. ++++++|++|+|++|.++.+|..|++|++|++|+++ ..+| .++.+++|+.|++.+|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 35555555555555554 555555555555555555555555555555555551 1233 45555555555555554
Q ss_pred -ccc--hHHhcccCCCCeEEEeec
Q 047642 665 -QWD--AVDARNLINLQELEIREI 685 (718)
Q Consensus 665 -~~~--~~~l~~l~~L~~L~l~~~ 685 (718)
... |..|+.+++|+.|++++|
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC
Confidence 222 455555555555555555
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.30 E-value=5.5e-12 Score=144.19 Aligned_cols=175 Identities=20% Similarity=0.121 Sum_probs=139.7
Q ss_pred ccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCcccc
Q 047642 525 SLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEF 603 (718)
Q Consensus 525 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~l 603 (718)
+|..+.++++.|.+.+|.... ..+..|.++++|++|+|++|.|+ . +| ..|++|++|++|+|++|+|+.+
T Consensus 46 vP~~lp~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~---~---i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQ---T---IEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCC---E---ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCCCcCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCC---C---cChhHhcCCCCCCEEEccCCcCCCC
Confidence 344456789999999998743 44567999999999999999998 5 65 5689999999999999999999
Q ss_pred ccc-ccccCCCcEEEecCccccccChh-hccccccceeeec------ccCcccCCCccccccccceecc--ccchHHhcc
Q 047642 604 PRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR------PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARN 673 (718)
Q Consensus 604 p~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~------~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~ 673 (718)
|+. +.+|++|++|++++|+++.+|.. |++|++|++|+++ ...|..++.+++|++|++..+. +..+..|..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 875 68999999999999999999875 8999999999982 2356778899999999998887 445666766
Q ss_pred cCCCC----eEEEeec-cccHHHHhhccCCCCeEEEeeCCC
Q 047642 674 LINLQ----ELEIREI-PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 674 l~~L~----~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+.+++ .++++.| ...++........+..|++++|..
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 66555 5666666 444555555556778888887644
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4e-13 Score=155.06 Aligned_cols=116 Identities=18% Similarity=0.134 Sum_probs=99.7
Q ss_pred cchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCcccc
Q 047642 580 LTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNL 655 (718)
Q Consensus 580 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L 655 (718)
.|..+..+.+|+.|+|++|.+..+|..++++++|++|+|++|.++.+|..|++|++|++|+++ ..+|..++.|++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 567889999999999999999999999999999999999999999999999999999999992 4678899999999
Q ss_pred ccccceecc-ccchHHhcccCCCCeEEEeec--cccHHHHhhc
Q 047642 656 QTLKYVNFQ-QWDAVDARNLINLQELEIREI--PYTNMNFILQ 695 (718)
Q Consensus 656 ~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~ 695 (718)
+.|++.+|. ..+|..|++|++|+.|+|++| ...+|..+..
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999988 777888999999999999999 4455555543
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=124.31 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=115.8
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhhcccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHL 590 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L 590 (718)
+.+.+..+.+.. .+..+.+.++.|.+.++..... ..+..|..+++|+.|+|++|.++ . +| ..++.+++|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~~~~~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~N~i~---~---i~~~~~~~l~~L 83 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSNNKIT---D---IEEGAFEGASGV 83 (220)
T ss_dssp TEEECCSSCCSS-CCSCCCTTCSEEECCSSCCCEE---CCCCCGGGCTTCCEEECCSSCCC---E---ECTTTTTTCTTC
T ss_pred CEeEeCCCCccc-CccCCCCCCCEEEcCCCcCCcc---CchhhhccCCCCCEEECCCCcCC---E---ECHHHhCCCCCC
Confidence 356666565555 3444567789999999886431 12345789999999999999998 4 55 579999999
Q ss_pred cEEeeccCCccccccc-ccccCCCcEEEecCcccccc-Chhhccccccceeeec-----ccCcccCCCccccccccceec
Q 047642 591 RYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 591 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
++|+|++|.++.+|+. +.++++|++|+|++|.++.+ |..|..+++|++|+++ ...|..+..+++|+.|++.+|
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 9999999999988876 78999999999999999987 5679999999999992 334677889999999999888
Q ss_pred c
Q 047642 664 Q 664 (718)
Q Consensus 664 ~ 664 (718)
.
T Consensus 164 ~ 164 (220)
T 2v70_A 164 P 164 (220)
T ss_dssp C
T ss_pred C
Confidence 7
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=8.8e-14 Score=155.62 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=136.6
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-------------ccccccccccchhhhhcccccEEe-e
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-------------IEHSGKVLRLTDSIGKLIHLRYFG-F 595 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------l~~~~~l~~~p~~i~~l~~L~~L~-l 595 (718)
.++|+.|.+.++. +..+|..+..+++|+.|++++|. +.+ . .|..++.+++|+.|+ +
T Consensus 348 ~~~L~~L~Ls~n~-----L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~--~---~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 348 DEQLFRCELSVEK-----STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL--Y---EKETLQYFSTLKAVDPM 417 (567)
T ss_dssp TTTSSSCCCCHHH-----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG--G---HHHHHHHHHHHHHHCGG
T ss_pred CccceeccCChhh-----HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc--C---CHHHHHHHHhcccCcch
Confidence 6778888887765 34677888899999999987764 232 3 678889999999998 6
Q ss_pred ccCCcccccc------cccc--cCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceec
Q 047642 596 KCNSLVEFPR------SIGN--LQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 596 ~~~~l~~lp~------~i~~--l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~ 663 (718)
++|.+..++. .+.. ...|++|++++|.++.+|. |++|++|++|+++ ..+|..++.+++|+.|++.+|
T Consensus 418 ~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 6665554443 1211 1368999999999999997 9999999999992 467888999999999999998
Q ss_pred c-ccchHHhcccCCCCeEEEeec-cccH--HHHhhccCCCCeEEEeeCCCCC
Q 047642 664 Q-QWDAVDARNLINLQELEIREI-PYTN--MNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 664 ~-~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
. ...| .++++++|+.|++++| ...+ |..++++++|+.|+|++|.+.+
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 8 4556 8999999999999999 4444 8999999999999999988755
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=9.8e-12 Score=132.86 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=164.8
Q ss_pred CCceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccCCC---ceEEEEEecCCCCHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF---DCRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~~l~~ 234 (718)
+..++||+++++.+.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|+......+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 467999999999999988752 334568999999999999999999984 32222 24667777666677788888
Q ss_pred HHHHhcCCcccchHHhhhcCHHHHHHHHHHHhc--CceEEEEEecCCCh------hhhhHHHhhCCC-CCCCcEEEEEec
Q 047642 235 TIKSFQKPKIEDLELMERMTEEDLELHLYEFLE--GRRYLVVVDDIWHK------SAWESLRRAFPD-NGNGSRIVITTR 305 (718)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVLDdv~~~------~~~~~l~~~l~~-~~~gsriivTTR 305 (718)
++..++..... ...+..++...+.+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+
T Consensus 97 i~~~l~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 97 LLESLDVKVPF-----TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HTTTTSCCCCS-----SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHhCCCCCC-----CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 87777543211 12234455555666654 45899999999753 234444433321 234566788888
Q ss_pred chhhhhhcCC------CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhcc--CChhHHHHHH
Q 047642 306 NEPVAMITDE------KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCRE--EIPHEWHTVK 377 (718)
Q Consensus 306 ~~~v~~~~~~------~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~--~~~~~w~~~~ 377 (718)
.......... ....+.+++++.++..+++...+...... .. .+ .+....+++.++. ..+..-..++
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~--~~-~~---~~~~~~l~~~~~~~~G~~r~~~~ll 245 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP--GV-LP---DNVIKLCAALAAREHGDARRALDLL 245 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS--SC-SC---HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC--CC-CC---HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7654322211 11479999999999999998754211000 00 22 2334444544431 2322222232
Q ss_pred HHhhcccc--C----CCCch--------HhHHHhcccCCChhhHHHHhhccCCCC-C-CeecHHHHHHHH--HHcCCcCC
Q 047642 378 NHLWWHLT--Q----DSDHV--------SPILALSYDELPYQLKSCFLYLSLFPE-D-SLIDTEKLIRLW--IAEGFIPE 439 (718)
Q Consensus 378 ~~~~~~~~--~----~~~~i--------~~~l~~sy~~L~~~~k~cfl~la~Fp~-~-~~i~~~~li~~W--~a~g~i~~ 439 (718)
........ + ..+.+ ...+.-.+..||.+.+..+..++...+ + ..+....+.+.. +++.+ ..
T Consensus 246 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~-g~ 324 (386)
T 2qby_A 246 RVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL-GV 324 (386)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc-CC
Confidence 22211000 0 11111 124555677889888888877774322 2 223343332322 11110 00
Q ss_pred CCCCHHHHHHHHHHHHhhccccchh
Q 047642 440 EEQDMENVAEEYLKELIDRSMIQIA 464 (718)
Q Consensus 440 ~~~~~e~~~~~~l~~L~~rsll~~~ 464 (718)
. .........+++.|...+++...
T Consensus 325 ~-~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 E-AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 11124467889999999999764
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=9.7e-12 Score=140.14 Aligned_cols=102 Identities=22% Similarity=0.159 Sum_probs=78.9
Q ss_pred CCCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhh
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGK 586 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~ 586 (718)
.+.+.+.|.+..|.+..++. .+++|+.|.+.+|.... +|. .+++|+.|++++|.++ . +|. .
T Consensus 59 l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~---~---l~~---~ 119 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-----LPV---LPPGLLELSIFSNPLT---H---LPA---L 119 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCC---C---CCC---C
T ss_pred hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-----CCC---CCCCCCEEECcCCcCC---C---CCC---C
Confidence 34678999999777765333 57899999999887632 333 6788999999999988 5 776 5
Q ss_pred cccccEEeeccCCcccccccccccCCCcEEEecCccccccChhh
Q 047642 587 LIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQI 630 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i 630 (718)
+++|++|++++|+++.+|.. +++|++|++++|.++.+|..+
T Consensus 120 l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~ 160 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP 160 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC
T ss_pred CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCcc
Confidence 67889999999999888874 478888888888888776543
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=8.9e-12 Score=122.80 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=107.6
Q ss_pred EEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hhhhcccccE
Q 047642 514 QVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SIGKLIHLRY 592 (718)
Q Consensus 514 l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i~~l~~L~~ 592 (718)
+....+.+.. .+..+.++++.|.+.++.... ..+..|..+++|++|+|++|.++ . +|. .+..+++|++
T Consensus 24 v~c~~~~l~~-ip~~~~~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~N~l~---~---i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 24 VDCRSKRHAS-VPAGIPTNAQILYLHDNQITK----LEPGVFDSLINLKELYLGSNQLG---A---LPVGVFDSLTQLTV 92 (229)
T ss_dssp EECTTSCCSS-CCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCC---C---CCTTTTTTCTTCCE
T ss_pred eEccCCCcCc-cCCCCCCCCCEEEcCCCccCc----cCHHHhhCccCCcEEECCCCCCC---C---cChhhcccCCCcCE
Confidence 3344333333 333446889999998887643 44567888899999999999987 5 664 4688999999
Q ss_pred EeeccCCccccccc-ccccCCCcEEEecCccccccChhhccccccceeeec----ccCc-ccCCCccccccccceecc
Q 047642 593 FGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGH-LQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 593 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p-~~~~~l~~L~~L~~~~~~ 664 (718)
|+|++|.|+.+|+. +..+++|++|++++|.++.+|..+.++++|++|+++ ..+| ..+..+++|+.|.+.+|.
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99999999988876 478999999999999999999999999999999882 2333 347788888888888776
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.27 E-value=9e-12 Score=125.51 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=75.8
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
+..+++|+.|++++|.++ . +| .++.+++|++|+|++|.++.+|+ +.++++|++|++++|.++.+|.... +
T Consensus 37 ~~~l~~L~~L~l~~n~i~---~---l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~ 106 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ---S---LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--A 106 (263)
T ss_dssp HHHHTTCSEEECTTSCCC---C---CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--S
T ss_pred hhhcCcCcEEECcCCCcc---c---ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--C
Confidence 344555566666666555 3 44 45556666666666666665555 5556666666666665555554222 5
Q ss_pred ccceeeec---ccCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCC
Q 047642 635 QLRHLIAR---PLGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 635 ~L~~L~l~---~~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+|++|+++ -.-...+..+++|+.|++..|.-.....++.+++|+.|++++| .... ..+..+++|+.|++++|..
T Consensus 107 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp SCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred cccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 56666551 1111235555555555555555111124555666666666655 2222 4455556666666665543
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.27 E-value=1.2e-11 Score=135.02 Aligned_cols=156 Identities=20% Similarity=0.213 Sum_probs=80.1
Q ss_pred CCceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhc
Q 047642 508 TSLTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKL 587 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l 587 (718)
+...+.+.+..+.+..++ ...++|+.|.+.++.... ++.. .++|++|++++|.++ . +| .++.+
T Consensus 90 ~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~---~---lp-~~~~l 152 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLE---K---LP-ELQNS 152 (454)
T ss_dssp CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCS---S---CC-CCTTC
T ss_pred cCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCC---C---Cc-ccCCC
Confidence 345666666655554421 224566666666654422 1111 145666666666665 3 55 36666
Q ss_pred ccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeecccCcccCC-Cccccccccceecc-c
Q 047642 588 IHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIARPLGHLQVS-TLTNLQTLKYVNFQ-Q 665 (718)
Q Consensus 588 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~p~~~~-~l~~L~~L~~~~~~-~ 665 (718)
++|++|++++|.++.+|..+ .+|++|++++|.++.+| .++++++|++|++......++. ..++|+.|++.++. .
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 66666666666666665433 35666666666666665 4666666666665211111111 11345555554444 2
Q ss_pred cchHHhcccCCCCeEEEeec
Q 047642 666 WDAVDARNLINLQELEIREI 685 (718)
Q Consensus 666 ~~~~~l~~l~~L~~L~l~~~ 685 (718)
..| .++.+++|+.|++++|
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSS
T ss_pred ccc-ccCCCCCCCEEECCCC
Confidence 222 3555555555555555
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=5.6e-12 Score=117.78 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=99.1
Q ss_pred cCCceEEEEEecCCccc-ccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccc-cChhhccc
Q 047642 556 SSLRFLRVLDLEDTRIE-HSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWK-LPSQISKL 633 (718)
Q Consensus 556 ~~l~~L~~L~l~~~~l~-~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~L 633 (718)
..+++|+.|++++|.++ + . +|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~--~---i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDG--K---IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp SCTTSCSEEECCSCBCBTT--B---CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CCcccCCEEECCCCCCChh--h---HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 34577889999999887 3 4 787788899999999999988888 678889999999999998887 67667778
Q ss_pred cccceeeecccCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-cccHH----HHhhccCCCCeEEEeeCC
Q 047642 634 HQLRHLIARPLGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI-PYTNM----NFILQVNSLRSLTLQTDT 708 (718)
Q Consensus 634 ~~L~~L~l~~~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~----~~l~~l~~L~~L~l~~~~ 708 (718)
++|++|+++......+ ..+..++.+++|+.|++++| ....| ..+..+++|++|++++|.
T Consensus 95 ~~L~~L~Ls~N~l~~~----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDI----------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSS----------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcc----------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8888887632110000 01245677788888888888 33333 368888889999988887
Q ss_pred CCC
Q 047642 709 AFN 711 (718)
Q Consensus 709 ~~~ 711 (718)
..+
T Consensus 159 ~~~ 161 (168)
T 2ell_A 159 DQE 161 (168)
T ss_dssp SCB
T ss_pred hhh
Confidence 644
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=8.5e-12 Score=132.08 Aligned_cols=163 Identities=14% Similarity=0.135 Sum_probs=114.8
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhcc-CCceEEEEEecCCcccccccccccc-hhhhhccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCS-SLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIH 589 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~ 589 (718)
+.+....+.+.. .+..+.+.++.|.+.+|.... ..+..|. .+++|+.|+|++|.++ . +| ..+..+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~----l~~~~~~~~l~~L~~L~L~~N~i~---~---i~~~~~~~l~~ 89 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSR----LRAEWTPTRLTNLHSLLLSHNHLN---F---ISSEAFVPVPN 89 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCE----ECTTSSSSCCTTCCEEECCSSCCC---E---ECTTTTTTCTT
T ss_pred CEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCc----cChhhhhhcccccCEEECCCCcCC---c---cChhhccCCCC
Confidence 345555444444 333446678888888887643 3345565 7888889999888888 4 44 56888888
Q ss_pred ccEEeeccCCccccccc-ccccCCCcEEEecCcccccc-Chhhccccccceeeec----ccCcccC----CCcccccccc
Q 047642 590 LRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKL-PSQISKLHQLRHLIAR----PLGHLQV----STLTNLQTLK 659 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~----~~~p~~~----~~l~~L~~L~ 659 (718)
|++|+|++|+|+.+|+. +.++.+|++|+|++|.++.+ |..|.++++|++|+++ ..+|..+ ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 99999998888888764 67888899999988888877 4568888888888882 3344443 4677788888
Q ss_pred ceecc--ccchHHhcccCC--CCeEEEeec
Q 047642 660 YVNFQ--QWDAVDARNLIN--LQELEIREI 685 (718)
Q Consensus 660 ~~~~~--~~~~~~l~~l~~--L~~L~l~~~ 685 (718)
+.+|. ...+..+..+++ |+.|++++|
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 77776 334456777766 377888877
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=4.4e-12 Score=134.39 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=17.5
Q ss_pred cccEEeeccCCcc-----cccccccccC-CCcEEEecCcccc
Q 047642 589 HLRYFGFKCNSLV-----EFPRSIGNLQ-CLKTMVASGNSCW 624 (718)
Q Consensus 589 ~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~i~ 624 (718)
+|++|+|++|.++ .++..+..+. +|++|++++|.++
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 5555555555554 3333333333 5555555555554
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.2e-11 Score=137.72 Aligned_cols=173 Identities=17% Similarity=0.103 Sum_probs=139.4
Q ss_pred ceeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhccc
Q 047642 510 LTRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIH 589 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~ 589 (718)
.++.+.+..+.+.. .+..++++|+.|.+.+|.... +| ..+++|+.|+|++|.++ . +|. ++. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~---~---ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLS---T---LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCS---C---CCC-CCT--T
T ss_pred CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCC---C---cch-hhc--C
Confidence 45677777666665 334457899999999988642 33 45789999999999998 5 787 665 9
Q ss_pred ccEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc-
Q 047642 590 LRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ- 664 (718)
Q Consensus 590 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~- 664 (718)
|++|+|++|.|+.+|. .+++|++|++++|.++.+|. .+++|++|+++ ..+|. ++ ++|+.|++.+|.
T Consensus 122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC
T ss_pred CCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC
Confidence 9999999999999998 68999999999999999997 67899999992 33565 55 889999999887
Q ss_pred ccchHHhcccCCC-------CeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCCc
Q 047642 665 QWDAVDARNLINL-------QELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFNT 712 (718)
Q Consensus 665 ~~~~~~l~~l~~L-------~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~ 712 (718)
...|. +.. +| +.|++++| ...+|..+.++++|+.|+|++|.+.+.
T Consensus 193 ~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 193 ESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp SSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred Cchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 54554 554 67 99999999 677899999999999999999988654
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=6.5e-13 Score=127.88 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=89.3
Q ss_pred CceEEEEEecCCcccccc-cccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChhhcccccc
Q 047642 558 LRFLRVLDLEDTRIEHSG-KVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQL 636 (718)
Q Consensus 558 l~~L~~L~l~~~~l~~~~-~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L 636 (718)
...++.++++++.+.+.. .+..+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 344444444444444300 11113446666777777777776666666 6666677777777777666666666666667
Q ss_pred ceeeec----ccCcccCCCccccccccceecc-ccc--hHHhcccCCCCeEEEeec--cccHHH----------HhhccC
Q 047642 637 RHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-QWD--AVDARNLINLQELEIREI--PYTNMN----------FILQVN 697 (718)
Q Consensus 637 ~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~~~--~~~l~~l~~L~~L~l~~~--~~~~~~----------~l~~l~ 697 (718)
++|+++ ..+| .++.+++|+.|++.+|. ... +..+..+++|+.|++++| ....|. .+..++
T Consensus 96 ~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 96 EELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp SEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred CEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 777661 1222 45566667777766666 222 247889999999999998 222222 378899
Q ss_pred CCCeEE
Q 047642 698 SLRSLT 703 (718)
Q Consensus 698 ~L~~L~ 703 (718)
+|+.|+
T Consensus 175 ~L~~Ld 180 (198)
T 1ds9_A 175 NLKKLD 180 (198)
T ss_dssp SCSEEC
T ss_pred CcEEEC
Confidence 999987
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=9e-12 Score=132.01 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=136.0
Q ss_pred CCCceeEEEeecCCcccccc----ccc--cc-cCcEeeeecCCccchhhhhhhhhccCC-ceEEEEEecCCccccccccc
Q 047642 507 STSLTRRQVIPSGNMKYVSL----VHF--YP-RLRSLLFFNPDRESINIKHLQTLCSSL-RFLRVLDLEDTRIEHSGKVL 578 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~----~~~--~~-~l~~L~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~l~ 578 (718)
.+...+++.+..+.+..... ..+ ++ +|+.|.+.+|.........+...+... ++|+.|+|++|.+++ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--~-- 95 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY--K-- 95 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG--S--
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh--H--
Confidence 45568899999777766443 222 55 899999998876542222333333343 889999999999884 3
Q ss_pred ccchhhhhc-----ccccEEeeccCCccccccc-c----cc-cCCCcEEEecCcccc-----ccChhhcccc-ccceeee
Q 047642 579 RLTDSIGKL-----IHLRYFGFKCNSLVEFPRS-I----GN-LQCLKTMVASGNSCW-----KLPSQISKLH-QLRHLIA 641 (718)
Q Consensus 579 ~~p~~i~~l-----~~L~~L~l~~~~l~~lp~~-i----~~-l~~L~~L~l~~~~i~-----~lp~~i~~L~-~L~~L~l 641 (718)
.+..++.. ++|++|+|++|.++..+.. + .. ..+|++|++++|.++ .++..+..++ +|++|++
T Consensus 96 -~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 96 -SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp -CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred -HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 44544443 8999999999999876542 2 33 268999999999887 5566667776 8999998
Q ss_pred cc-c----Cccc----CCCc-cccccccceecc-cc-----chHHhccc-CCCCeEEEeec--c----ccHHHHhhccCC
Q 047642 642 RP-L----GHLQ----VSTL-TNLQTLKYVNFQ-QW-----DAVDARNL-INLQELEIREI--P----YTNMNFILQVNS 698 (718)
Q Consensus 642 ~~-~----~p~~----~~~l-~~L~~L~~~~~~-~~-----~~~~l~~l-~~L~~L~l~~~--~----~~~~~~l~~l~~ 698 (718)
+. . .+.. +..+ ++|+.|++..|. +. .+..+..+ ++|+.|++++| . ..+...+..+++
T Consensus 175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 31 1 1212 2334 588889888887 22 45666664 58999999998 1 233455677899
Q ss_pred CCeEEEeeCC
Q 047642 699 LRSLTLQTDT 708 (718)
Q Consensus 699 L~~L~l~~~~ 708 (718)
|+.|+|++|.
T Consensus 255 L~~L~L~~n~ 264 (362)
T 3goz_A 255 LQTVYLDYDI 264 (362)
T ss_dssp CSEEEEEHHH
T ss_pred ccEEEeccCC
Confidence 9999999986
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=1.4e-11 Score=130.33 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=126.5
Q ss_pred cEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hhh-hcccccEEeeccCCcccccc-ccccc
Q 047642 534 RSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SIG-KLIHLRYFGFKCNSLVEFPR-SIGNL 610 (718)
Q Consensus 534 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i~-~l~~L~~L~l~~~~l~~lp~-~i~~l 610 (718)
+.+.+.++... .+|..+ .+.++.|+|++|.++ . +|. .+. .+++|++|+|++|.|+.+|+ .+.++
T Consensus 21 ~~l~c~~~~l~-----~iP~~~--~~~l~~L~Ls~N~l~---~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLP-----NVPQSL--PSYTALLDLSHNNLS---R---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCS-----SCCSSC--CTTCSEEECCSSCCC---E---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEeCCCCcC-----ccCccC--CCCCCEEECCCCCCC---c---cChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 56666666542 233332 245889999999998 5 554 455 89999999999999999885 58999
Q ss_pred CCCcEEEecCccccccChh-hccccccceeeec-----ccCcccCCCccccccccceecc-ccchHH-h---cccCCCCe
Q 047642 611 QCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ-QWDAVD-A---RNLINLQE 679 (718)
Q Consensus 611 ~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~-~~~~~~-l---~~l~~L~~ 679 (718)
++|++|+|++|.++.+|.. |.++++|++|+++ ...|..+..+++|+.|++.+|. ...+.. | ..+++|+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence 9999999999999988764 8899999999992 2336678899999999999888 444444 3 67999999
Q ss_pred EEEeec-cccH-HHHhhccCC--CCeEEEeeCCCC
Q 047642 680 LEIREI-PYTN-MNFILQVNS--LRSLTLQTDTAF 710 (718)
Q Consensus 680 L~l~~~-~~~~-~~~l~~l~~--L~~L~l~~~~~~ 710 (718)
|++++| ...+ +..+..++. |+.|+|++|...
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999 3333 456788876 489999998753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=5.6e-12 Score=115.15 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCceEEEEEecCCccc-ccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccc-cChhhcccc
Q 047642 557 SLRFLRVLDLEDTRIE-HSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWK-LPSQISKLH 634 (718)
Q Consensus 557 ~l~~L~~L~l~~~~l~-~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~L~ 634 (718)
..++|+.|++++|.++ + . +|..++.+++|++|++++|.++.+ ..++++++|++|++++|.++. +|..+++++
T Consensus 15 ~~~~l~~L~l~~n~l~~~--~---~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEG--K---LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTT--B---CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCccCeEEEccCCcCChh--H---HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3466777788887776 3 4 677777778888888888777777 567777888888888887776 666666677
Q ss_pred ccceeeecccCcccCCCccccccccceeccccchHHhcccCCCCeEEEeec-cccHH----HHhhccCCCCeEEEe
Q 047642 635 QLRHLIARPLGHLQVSTLTNLQTLKYVNFQQWDAVDARNLINLQELEIREI-PYTNM----NFILQVNSLRSLTLQ 705 (718)
Q Consensus 635 ~L~~L~l~~~~p~~~~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~----~~l~~l~~L~~L~l~ 705 (718)
+|++|+++.... +. ...+..++.+++|+.|++++| ....+ ..+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i------~~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKI------KD----------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCC------CS----------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcC------CC----------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776521100 00 001245566666666666666 22222 356666777776654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.1e-11 Score=115.73 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=83.8
Q ss_pred hcccccEEeeccCCcc--cccccccccCCCcEEEecCccccccChhhccccccceeeecccCcccCCCccccccccceec
Q 047642 586 KLIHLRYFGFKCNSLV--EFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIARPLGHLQVSTLTNLQTLKYVNF 663 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~p~~~~~l~~L~~L~~~~~ 663 (718)
..++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++ ..|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L-------------------s~N 81 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLEL-------------------SEN 81 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEE-------------------ESC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEEC-------------------cCC
Confidence 4478999999999998 8998889999999999999988877 55666666666654 333
Q ss_pred c--ccchHHhcccCCCCeEEEeec-cccHH--HHhhccCCCCeEEEeeCCCCC
Q 047642 664 Q--QWDAVDARNLINLQELEIREI-PYTNM--NFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 664 ~--~~~~~~l~~l~~L~~L~l~~~-~~~~~--~~l~~l~~L~~L~l~~~~~~~ 711 (718)
. ...+..++.+++|+.|++++| ...++ ..+.++++|+.|++++|...+
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 3 224566778999999999999 44433 789999999999999987644
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=1.4e-11 Score=116.05 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=55.0
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcc-cccEEeeccCCcccccccccccCCCcEEEecCccccccChhh-cc
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLI-HLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQI-SK 632 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~ 632 (718)
+..+.+|+.|++++|.++ . +|. +..+. +|++|++++|.++.+ +.++++++|++|++++|.++.+|..+ +.
T Consensus 15 ~~~~~~L~~L~l~~n~l~---~---i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP---V---IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCC---S---CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCcCCceEEEeeCCCCc---h---hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 455667777777777776 4 543 44444 777777777777776 46777777777777777777777554 67
Q ss_pred ccccceeee
Q 047642 633 LHQLRHLIA 641 (718)
Q Consensus 633 L~~L~~L~l 641 (718)
+++|++|++
T Consensus 87 l~~L~~L~L 95 (176)
T 1a9n_A 87 LPDLTELIL 95 (176)
T ss_dssp CTTCCEEEC
T ss_pred CCCCCEEEC
Confidence 777777766
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=3.7e-12 Score=139.71 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=92.4
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCc----eEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccc-c
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLR----FLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEF-P 604 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~l-p 604 (718)
+++|+.|.+.++..... .+...+..++ +|+.|++++|.+++.. ...+|..+..+++|++|++++|.+... +
T Consensus 55 ~~~L~~L~Ls~n~l~~~---~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 55 NPALAELNLRSNELGDV---GVHCVLQGLQTPSCKIQKLSLQNCCLTGAG-CGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp CTTCCEEECTTCCCHHH---HHHHHHHTTCSTTCCCCEEECTTSCCBGGG-HHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred CCCcCEEeCCCCcCChH---HHHHHHHHHhhCCCceeEEEccCCCCCHHH-HHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 45666666665554221 1112222233 4666666666655200 001455566666666666666665521 2
Q ss_pred cccc-----ccCCCcEEEecCccccc-----cChhhccccccceeeec-ccC----cccCC-----Cccccccccceecc
Q 047642 605 RSIG-----NLQCLKTMVASGNSCWK-----LPSQISKLHQLRHLIAR-PLG----HLQVS-----TLTNLQTLKYVNFQ 664 (718)
Q Consensus 605 ~~i~-----~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~-~~~----p~~~~-----~l~~L~~L~~~~~~ 664 (718)
..+. .+.+|++|++++|.++. +|..+..+++|++|+++ ..+ +..+. .+++|+.|++.++.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 2221 23456666666665553 34455666777777662 111 11111 23466777766665
Q ss_pred -c-----cchHHhcccCCCCeEEEeec--cc----cHHHH-hhccCCCCeEEEeeCCCC
Q 047642 665 -Q-----WDAVDARNLINLQELEIREI--PY----TNMNF-ILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 665 -~-----~~~~~l~~l~~L~~L~l~~~--~~----~~~~~-l~~l~~L~~L~l~~~~~~ 710 (718)
. ..+..+..+++|+.|++++| .. .+++. +..+++|++|++++|...
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 2 13556677777888888777 11 12222 234677888888777653
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=4.5e-11 Score=125.96 Aligned_cols=200 Identities=11% Similarity=0.021 Sum_probs=137.9
Q ss_pred CCCceeEEEeecCCccccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEE-EEEecCCccccccccccc-ch
Q 047642 507 STSLTRRQVIPSGNMKYVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLR-VLDLEDTRIEHSGKVLRL-TD 582 (718)
Q Consensus 507 ~~~~~r~l~l~~~~~~~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~l~~~-p~ 582 (718)
.+..+++|.+..|.+..+....+ +++|+.|.+.+|.... ...+..|.++++|. .+.+++|+++ . + |.
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~---~i~~~~f~~L~~l~~~l~~~~N~l~---~---l~~~ 98 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---VIEADVFSNLPKLHEIRIEKANNLL---Y---INPE 98 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC---EECTTSBCSCTTCCEEEEEEETTCC---E---ECTT
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC---ccChhHhhcchhhhhhhcccCCccc---c---cCch
Confidence 34568889999888877555555 8899999998887522 12235677777654 4667778887 4 5 45
Q ss_pred hhhhcccccEEeeccCCccccccc-ccccCCCcEEEecC-ccccccChh-hcccc-ccceeeec----ccCcccCCCccc
Q 047642 583 SIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASG-NSCWKLPSQ-ISKLH-QLRHLIAR----PLGHLQVSTLTN 654 (718)
Q Consensus 583 ~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~-~~i~~lp~~-i~~L~-~L~~L~l~----~~~p~~~~~l~~ 654 (718)
.+..+++|++|++++|.++.+|+. +....++..|++.+ +.+..+|.. +..+. .|+.|+++ ..+|.......+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 678889999999999888887754 34566777888865 467777764 45553 57777772 345666666777
Q ss_pred cccccceecc--ccch-HHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCCccCCCC
Q 047642 655 LQTLKYVNFQ--QWDA-VDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFNTLLPLS 717 (718)
Q Consensus 655 L~~L~~~~~~--~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~pl~ 717 (718)
|+.|.+..++ ..+| ..|+.+++|+.|++++| ...+|. ..+.+|+.|.+.+++.+..+|++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTT
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCCch
Confidence 8888776543 4444 45788888888888888 555554 235677777777777666666643
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.18 E-value=2.9e-11 Score=127.35 Aligned_cols=191 Identities=15% Similarity=0.019 Sum_probs=139.9
Q ss_pred EEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhhcccccE
Q 047642 514 QVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRY 592 (718)
Q Consensus 514 l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~ 592 (718)
+.-..+++.. .+..+.++++.|.+.+|.... ..+..|.++++|+.|+|++|.+.+ . +| ..|.++++|..
T Consensus 14 v~C~~~~Lt~-iP~~l~~~l~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~i~~--~---i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 14 FLCQESKVTE-IPSDLPRNAIELRFVLTKLRV----IQKGAFSGFGDLEKIEISQNDVLE--V---IEADVFSNLPKLHE 83 (350)
T ss_dssp EEEESTTCCS-CCTTCCTTCSEEEEESCCCSE----ECTTSSTTCTTCCEEEEECCTTCC--E---ECTTSBCSCTTCCE
T ss_pred EEecCCCCCc-cCcCcCCCCCEEEccCCcCCC----cCHHHHcCCCCCCEEECcCCCCCC--c---cChhHhhcchhhhh
Confidence 3344344444 344457789999999988643 345678999999999999999763 4 55 45788888775
Q ss_pred -EeeccCCcccccc-cccccCCCcEEEecCccccccChh-hccccccceeeec-----ccCcc-cCCCc-ccccccccee
Q 047642 593 -FGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHL-QVSTL-TNLQTLKYVN 662 (718)
Q Consensus 593 -L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~-~~~~l-~~L~~L~~~~ 662 (718)
+.+++|+++.+|+ .+.++++|++|++++|.+..+|.. +..+.++..|++. ..+|. .+..+ ..|+.|.+..
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 6667899999865 478899999999999999988764 5566677777762 22332 34444 3578888888
Q ss_pred cc-ccchHHhcccCCCCeEEEeec--cccHHH-HhhccCCCCeEEEeeCCCCCccCC
Q 047642 663 FQ-QWDAVDARNLINLQELEIREI--PYTNMN-FILQVNSLRSLTLQTDTAFNTLLP 715 (718)
Q Consensus 663 ~~-~~~~~~l~~l~~L~~L~l~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~p 715 (718)
+. ..++......++|+.|++.++ ...+|. .+.++++|+.|+|++|++. .+++
T Consensus 164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 77 556666667788999999854 556654 5799999999999998764 3544
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.18 E-value=4.5e-11 Score=130.40 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=133.7
Q ss_pred eeEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccc
Q 047642 511 TRRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHL 590 (718)
Q Consensus 511 ~r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L 590 (718)
.+++.+..+.+..++ ...++|+.|.+.++.... +|. .+++|+.|++++|.++ . +|.. .++|
T Consensus 73 l~~L~l~~~~l~~lp--~~~~~L~~L~l~~n~l~~-----lp~---~~~~L~~L~l~~n~l~---~---l~~~---~~~L 133 (454)
T 1jl5_A 73 AHELELNNLGLSSLP--ELPPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLK---A---LSDL---PPLL 133 (454)
T ss_dssp CSEEECTTSCCSCCC--SCCTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCS---C---CCSC---CTTC
T ss_pred CCEEEecCCccccCC--CCcCCCCEEEccCCcCCc-----ccc---ccCCCcEEECCCCccC---c---ccCC---CCCC
Confidence 456777766555422 246889999999887643 333 3478999999999998 4 5532 2689
Q ss_pred cEEeeccCCcccccccccccCCCcEEEecCccccccChhhccccccceeeec----ccCcccCCCccccccccceecc-c
Q 047642 591 RYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIAR----PLGHLQVSTLTNLQTLKYVNFQ-Q 665 (718)
Q Consensus 591 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~----~~~p~~~~~l~~L~~L~~~~~~-~ 665 (718)
++|++++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|+++ ..+| .++.+++|+.|++..+. .
T Consensus 134 ~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 134 EYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 99999999999999 6999999999999999999998754 589999882 3345 68899999999988887 3
Q ss_pred cchHHhcccCCCCeEEEeec-cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 666 WDAVDARNLINLQELEIREI-PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 666 ~~~~~l~~l~~L~~L~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
..|. ..++|+.|++++| ...+| .++++++|++|++++|...+
T Consensus 209 ~l~~---~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 209 KLPD---LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCC---CcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 3332 1258999999999 44666 48899999999999987654
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=3.6e-11 Score=109.73 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=76.7
Q ss_pred CceeEEEeecCCcc-ccccccc--cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhh
Q 047642 509 SLTRRQVIPSGNMK-YVSLVHF--YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIG 585 (718)
Q Consensus 509 ~~~r~l~l~~~~~~-~~~~~~~--~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~ 585 (718)
...+++.+..+.+. ...+..+ +++|+.|.+.++.... + ..+..+++|++|++++|.+++ . +|..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~Ls~n~i~~--~---~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----I-ANLPKLNKLKKLELSDNRVSG--G---LEVLAE 85 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-----C-TTCCCCTTCCEEECCSSCCCS--C---THHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-----c-hhhhcCCCCCEEECCCCcccc--h---HHHHhh
Confidence 45666666655554 1222222 6677777776665432 1 455667777777777777663 3 555566
Q ss_pred hcccccEEeeccCCccccc--ccccccCCCcEEEecCccccccCh----hhccccccceeee
Q 047642 586 KLIHLRYFGFKCNSLVEFP--RSIGNLQCLKTMVASGNSCWKLPS----QISKLHQLRHLIA 641 (718)
Q Consensus 586 ~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l 641 (718)
.+++|++|++++|.++.+| ..++++++|++|++++|.++.+|. .++.+++|++|++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6777777777777777654 566777777777777777776665 4666677776653
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=6.1e-12 Score=138.01 Aligned_cols=200 Identities=16% Similarity=0.082 Sum_probs=115.4
Q ss_pred CceeEEEeecCCccccccccc-------cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccccc-cccc
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF-------YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGK-VLRL 580 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~-------~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-l~~~ 580 (718)
...+++.+..+.+.......+ .++|+.|.+.++.........++..+..+++|+.|++++|.+++ . +..+
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~--~~~~~l 247 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD--VGMAEL 247 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH--HHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh--HHHHHH
Confidence 345666666554433211111 33677777777665443333345556667777777777777652 1 0001
Q ss_pred chh-hhhcccccEEeeccCCccc-----ccccccccCCCcEEEecCcccccc-Chhhc-----cccccceeeec-cc---
Q 047642 581 TDS-IGKLIHLRYFGFKCNSLVE-----FPRSIGNLQCLKTMVASGNSCWKL-PSQIS-----KLHQLRHLIAR-PL--- 644 (718)
Q Consensus 581 p~~-i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~-----~L~~L~~L~l~-~~--- 644 (718)
++. +..+++|++|++++|.++. +|..+.++++|++|++++|.+... +..+. ..++|++|+++ ..
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 111 1246777777777777765 666666777777777777766532 11222 22577777772 11
Q ss_pred -----CcccCCCccccccccceecc--ccchHHhcc-----cCCCCeEEEeec--c----ccHHHHhhccCCCCeEEEee
Q 047642 645 -----GHLQVSTLTNLQTLKYVNFQ--QWDAVDARN-----LINLQELEIREI--P----YTNMNFILQVNSLRSLTLQT 706 (718)
Q Consensus 645 -----~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~-----l~~L~~L~l~~~--~----~~~~~~l~~l~~L~~L~l~~ 706 (718)
++..+..+++|+.|++..+. ...+..+.. .++|+.|++++| . ..+|..+..+++|++|+|++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 23344556777777777665 222333332 567778888777 2 15677777778888888877
Q ss_pred CCCC
Q 047642 707 DTAF 710 (718)
Q Consensus 707 ~~~~ 710 (718)
|...
T Consensus 408 N~i~ 411 (461)
T 1z7x_W 408 NCLG 411 (461)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=4e-11 Score=114.62 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=81.4
Q ss_pred cEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch--hhhhcccccEEeeccCCcccc-ccccccc
Q 047642 534 RSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD--SIGKLIHLRYFGFKCNSLVEF-PRSIGNL 610 (718)
Q Consensus 534 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l 610 (718)
+++.+.++... .+|..+. ..|+.|++++|.++ . +|. .++.+++|++|+|++|.|+.+ |..+.++
T Consensus 11 ~~l~~s~~~l~-----~ip~~~~--~~l~~L~l~~n~i~---~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-----EIPRDIP--LHTTELLLNDNELG---R---ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCS-----SCCSCCC--TTCSEEECCSCCCC---S---BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcC-----cCccCCC--CCCCEEECCCCcCC---c---cCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 56666665542 2233222 26788888888887 4 554 378888888888888888876 5567888
Q ss_pred CCCcEEEecCccccccChh-hccccccceeeec-----ccCcccCCCccccccccceecc
Q 047642 611 QCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR-----PLGHLQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 611 ~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~-----~~~p~~~~~l~~L~~L~~~~~~ 664 (718)
++|++|+|++|.++.+|.. |.++++|++|+++ ...|..+..+++|+.|++.+|.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8888888888888877654 7778888888772 3345566677777777766665
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=3.3e-11 Score=113.42 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=56.0
Q ss_pred cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccc-c
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSI-G 608 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~ 608 (718)
+++++.|.+.++.... ++......++|++|++++|.++ . + +.++.+++|++|++++|.++.+|+.+ .
T Consensus 18 ~~~L~~L~l~~n~l~~-----i~~~~~~~~~L~~L~Ls~N~l~---~---~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIR---K---L-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCC---E---E-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCceEEEeeCCCCch-----hHHhhhcCCCCCEEECCCCCCC---c---c-cccccCCCCCEEECCCCcccccCcchhh
Confidence 4455555555554421 1222222336666666666665 3 3 34556666666666666666666554 5
Q ss_pred ccCCCcEEEecCccccccCh--hhccccccceeee
Q 047642 609 NLQCLKTMVASGNSCWKLPS--QISKLHQLRHLIA 641 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l 641 (718)
.+++|++|++++|.+..+|. .++.+++|++|++
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 66666666666666666665 4555555555554
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=4.8e-11 Score=114.02 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=96.0
Q ss_pred EEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccc--ccccCCCcEEEecCcccccc-Chhhccccccce
Q 047642 562 RVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS--IGNLQCLKTMVASGNSCWKL-PSQISKLHQLRH 638 (718)
Q Consensus 562 ~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~ 638 (718)
++++++++.++ . +|..+.. +|++|++++|.++.+|+. +.++++|++|+|++|.++.+ |..|.++++|++
T Consensus 11 ~~l~~s~~~l~---~---ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLK---E---IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCS---S---CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcC---c---CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 67899999998 6 8876654 899999999999999874 88999999999999999987 667999999999
Q ss_pred eeec-----ccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 639 LIAR-----PLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 639 L~l~-----~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
|+++ ...|..+..+++|+.|++.+|. +..+..++.+++|+.|++++|
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9982 2334457778888888888777 445677888888888888888
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=9.6e-11 Score=111.96 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=71.3
Q ss_pred ceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccccCh-hhcccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLPS-QISKLHQL 636 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L 636 (718)
++|+.|++++|.++ . +|..+..+++|++|+|++|.|+.+|+ .+.++++|++|+|++|.++.+|. .|..+++|
T Consensus 31 ~~l~~L~L~~n~i~---~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFT---L---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCC---S---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCCcCc---h---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 46788888888877 5 77778888888888888888887765 46778888888888888887765 47777788
Q ss_pred ceeeec----ccCcc-cCCCccccccccceecc
Q 047642 637 RHLIAR----PLGHL-QVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 637 ~~L~l~----~~~p~-~~~~l~~L~~L~~~~~~ 664 (718)
++|+++ ..+|. .+..+++|+.|++.+|.
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 877772 22333 24556666666655554
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=1.7e-12 Score=124.84 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=97.1
Q ss_pred hhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccChh
Q 047642 550 HLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPSQ 629 (718)
Q Consensus 550 ~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~~ 629 (718)
.++..+..+++|++|++++|.++ . +| .++.+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~---~---l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIE---K---IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEES---C---CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H
T ss_pred hhhHHHhcCCCCCEEECCCCCCc---c---cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c
Confidence 34456778888999999998888 5 77 788899999999999888888887788888999999999888887 6
Q ss_pred hccccccceeeec----ccCc--ccCCCccccccccceecc-ccc-h----------HHhcccCCCCeEE
Q 047642 630 ISKLHQLRHLIAR----PLGH--LQVSTLTNLQTLKYVNFQ-QWD-A----------VDARNLINLQELE 681 (718)
Q Consensus 630 i~~L~~L~~L~l~----~~~p--~~~~~l~~L~~L~~~~~~-~~~-~----------~~l~~l~~L~~L~ 681 (718)
++++++|++|+++ ..+| ..+..+++|+.|++.+|. ... | ..+..+++|+.|+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8888899998882 1222 257788888888887776 222 2 2378899999887
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.12 E-value=6.1e-11 Score=134.46 Aligned_cols=149 Identities=12% Similarity=0.011 Sum_probs=82.0
Q ss_pred ccCCceEEEEEecCCcccc--cccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccc----cccCh
Q 047642 555 CSSLRFLRVLDLEDTRIEH--SGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSC----WKLPS 628 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~--~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i----~~lp~ 628 (718)
+..+++|+.|++++|.+++ ... ++..+..+++|++|++++|.+..+|..+.++++|+.|+++++.. ...+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKD---LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHH---HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HhcCCCccEEEeeccCCCccCHHH---HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 3344445555555544431 001 33334445555555555555555554455555555555543211 12233
Q ss_pred hhccccccceeee----cccCcccCCCccccccccceecc---ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCC
Q 047642 629 QISKLHQLRHLIA----RPLGHLQVSTLTNLQTLKYVNFQ---QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSL 699 (718)
Q Consensus 629 ~i~~L~~L~~L~l----~~~~p~~~~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L 699 (718)
.+..+++|+.|.+ ...+|..+..+++|+.|++..+. ......++.+++|+.|+++++ ...++..+..+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 4445555555554 13345555667778888777765 122234678888888888855 44555556778889
Q ss_pred CeEEEee
Q 047642 700 RSLTLQT 706 (718)
Q Consensus 700 ~~L~l~~ 706 (718)
++|+|++
T Consensus 345 ~~L~L~~ 351 (592)
T 3ogk_B 345 KRLRIER 351 (592)
T ss_dssp CEEEEEC
T ss_pred CEEEeec
Confidence 9999984
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=110.34 Aligned_cols=116 Identities=19% Similarity=0.181 Sum_probs=95.6
Q ss_pred EEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccCh-hhccccccceee
Q 047642 562 RVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLI 640 (718)
Q Consensus 562 ~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~ 640 (718)
++++++++.++ . +|..+. .+|++|+|++|.|+.+|..+.++++|++|++++|.++.+|. .|.+|++|++|+
T Consensus 13 ~~l~~~~~~l~---~---ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK---V---LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS---S---CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC---c---CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 57899999988 6 887664 68999999999999999999999999999999999998875 489999999999
Q ss_pred ec-----ccCcccCCCccccccccceecc-ccc-hHHhcccCCCCeEEEeec
Q 047642 641 AR-----PLGHLQVSTLTNLQTLKYVNFQ-QWD-AVDARNLINLQELEIREI 685 (718)
Q Consensus 641 l~-----~~~p~~~~~l~~L~~L~~~~~~-~~~-~~~l~~l~~L~~L~l~~~ 685 (718)
++ ...|..+..+++|+.|++.+|. ... +..|..+++|+.|++++|
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 82 2234457788888888888777 333 345778888888888887
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.00 E-value=3e-09 Score=105.41 Aligned_cols=197 Identities=14% Similarity=0.200 Sum_probs=110.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
..++||+..++.+..++..+. ....+.|+|++|+||||||+.+++.......+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 469999999999999987653 2358899999999999999999884321111100 00000000 011100000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEEecchhhh-hh
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVITTRNEPVA-MI 312 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivTTR~~~v~-~~ 312 (718)
. .............+.+. .+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+..... ..
T Consensus 95 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 95 V-DLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp S-SEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred c-ceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0 00000000000111111 222222 34679999999975 456777777666556678899988765421 11
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHH
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTV 376 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~ 376 (718)
.......+++++++.++..+++...+...... .+ .+....|++.|++ .+..-..+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-----~~---~~~~~~l~~~~~G-~~~~~~~~ 227 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-----HE---PRALQLLARAAEG-SLRDALSL 227 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-----BC---HHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-----CC---HHHHHHHHHHcCC-CHHHHHHH
Confidence 11122578999999999999998876532211 12 2445677777743 44333333
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=5.5e-10 Score=126.56 Aligned_cols=198 Identities=17% Similarity=0.074 Sum_probs=146.0
Q ss_pred CCceeEEEeecCCccccc---cccc---cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc
Q 047642 508 TSLTRRQVIPSGNMKYVS---LVHF---YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT 581 (718)
Q Consensus 508 ~~~~r~l~l~~~~~~~~~---~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p 581 (718)
.+..+.|.+..+...... ...+ +++|++|.+.++.........++..+.++++|+.|++++|.+. . +|
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~---~---l~ 236 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL---E---LV 236 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG---G---GH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH---H---HH
Confidence 356788888866543221 1111 7899999998887642223455667788999999999999988 5 88
Q ss_pred hhhhhcccccEEeeccCCc----ccccccccccCCCcEEEecCccccccChhhccccccceeeecc-cC-----cccCCC
Q 047642 582 DSIGKLIHLRYFGFKCNSL----VEFPRSIGNLQCLKTMVASGNSCWKLPSQISKLHQLRHLIARP-LG-----HLQVST 651 (718)
Q Consensus 582 ~~i~~l~~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~-~~-----p~~~~~ 651 (718)
..+..+++|++|+++.... ...+..+..+++|+.|+++++....+|..+..+++|++|+++. .+ +..+..
T Consensus 237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 8999999999999985322 2455677889999999999887778998899999999999932 12 123578
Q ss_pred ccccccccceecc--ccchHHhcccCCCCeEEEee-----------c---cccHHHHhhccCCCCeEEEeeCCCCC
Q 047642 652 LTNLQTLKYVNFQ--QWDAVDARNLINLQELEIRE-----------I---PYTNMNFILQVNSLRSLTLQTDTAFN 711 (718)
Q Consensus 652 l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~-----------~---~~~~~~~l~~l~~L~~L~l~~~~~~~ 711 (718)
+++|+.|.+.++- ...+..+..+++|+.|++++ + ...++.....+++|++|++++|+..+
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 8999999887433 33444557889999999994 3 33445556779999999997776643
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.98 E-value=6.9e-10 Score=104.37 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=61.0
Q ss_pred ceEEEEEecCCcccccccccccch-hhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTD-SIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQ 635 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~ 635 (718)
++|+.|++++|.++ . +|. .++.+++|++|++++|.++.+|+. +.++++|++|++++|.++.+|.. +.++++
T Consensus 28 ~~l~~L~l~~n~l~---~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 28 SSATRLELESNKLQ---S---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TTCSEEECCSSCCC---C---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEeCCCccc---E---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 45666666666665 3 343 345666666666666666666554 35666666666666666655543 344445
Q ss_pred cceeeecccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 636 LRHLIARPLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 636 L~~L~l~~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
|++|+ +.++. ...+..+..+++|+.|++++|
T Consensus 102 L~~L~-------------------l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 102 LKELA-------------------LDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCEEE-------------------CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEEE-------------------CcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 54444 44443 222334677889999999988
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=1.3e-09 Score=102.39 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=94.9
Q ss_pred EEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch-hhhhccccc
Q 047642 513 RQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD-SIGKLIHLR 591 (718)
Q Consensus 513 ~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~-~i~~l~~L~ 591 (718)
.+.+..+.+.. .+..+.++++.|.+.++.... .++..|..+++|++|++++|.++ . +|. .++.+++|+
T Consensus 11 ~l~~~~~~l~~-~p~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~---~---~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 11 EIRCNSKGLTS-VPTGIPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQ---S---LPDGVFDKLTKLT 79 (177)
T ss_dssp EEECCSSCCSS-CCTTCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC---C---CCTTTTTTCTTCC
T ss_pred EEEecCCCCcc-CCCCCCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcce---E---eChhHccCCCccC
Confidence 44555444444 233446889999999887643 34566788999999999999998 5 664 468999999
Q ss_pred EEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccceeee
Q 047642 592 YFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIA 641 (718)
Q Consensus 592 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 641 (718)
+|++++|.++.+|+. +.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 999999999999876 58899999999999999999887 477899999988
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.91 E-value=9.8e-09 Score=100.11 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCHHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
...++|+++.++.+.+++.... ...+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+. ..+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVR-HKIKE 91 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHH-HHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHH-HHHHH
Confidence 3468999999999999997654 23489999999999999999988421 11121 12233333222222111 11111
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchhhh-hhcCC
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEPVA-MITDE 315 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~v~-~~~~~ 315 (718)
+.... ..-.+++.+||+||++.. ..++.+...+.....+.++|+||+..... .....
T Consensus 92 ~~~~~--------------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 92 FARTA--------------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp HHTSC--------------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred Hhccc--------------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 10000 001357889999999864 34555665555455678899988765321 11111
Q ss_pred CCceeeccCCCHHhHHHHHHhhhC
Q 047642 316 KNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
....+++.+++.++..+++...+.
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHH
Confidence 124789999999999999987664
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=5.9e-10 Score=126.31 Aligned_cols=194 Identities=15% Similarity=0.094 Sum_probs=98.8
Q ss_pred ceeEEEeecCCccccccccc---cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCccccccc-ccccchhhh
Q 047642 510 LTRRQVIPSGNMKYVSLVHF---YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGK-VLRLTDSIG 585 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-l~~~p~~i~ 585 (718)
..+++.+..+......+..+ +++|+.|.+.++.... ...++..+.++++|++|+|++|.+++ . ...++....
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~ 181 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDD--VSGHWLSHFPD 181 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEEC--CCGGGGGGSCT
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCC--cchHHHHHHhh
Confidence 34555555443332222111 4566666666553211 11233444456666666666665542 1 000111122
Q ss_pred hcccccEEeeccCC--cc--cccccccccCCCcEEEecCc-cccccChhhccccccceeee-------------------
Q 047642 586 KLIHLRYFGFKCNS--LV--EFPRSIGNLQCLKTMVASGN-SCWKLPSQISKLHQLRHLIA------------------- 641 (718)
Q Consensus 586 ~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l------------------- 641 (718)
.+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|..+.++++|++|.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 44456666665554 11 12222233455666666555 33344444445555555542
Q ss_pred ------------c----ccCcccCCCccccccccceecc---ccchHHhcccCCCCeEEEeec--cccHHHHhhccCCCC
Q 047642 642 ------------R----PLGHLQVSTLTNLQTLKYVNFQ---QWDAVDARNLINLQELEIREI--PYTNMNFILQVNSLR 700 (718)
Q Consensus 642 ------------~----~~~p~~~~~l~~L~~L~~~~~~---~~~~~~l~~l~~L~~L~l~~~--~~~~~~~l~~l~~L~ 700 (718)
. ..+|..+..+++|+.|++..+. ......+..+++|+.|+++++ ...++.....+++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 1 1223333356778888877766 122334668899999999988 333444445688999
Q ss_pred eEEEeeC
Q 047642 701 SLTLQTD 707 (718)
Q Consensus 701 ~L~l~~~ 707 (718)
+|+|++|
T Consensus 342 ~L~L~~~ 348 (594)
T 2p1m_B 342 ELRVFPS 348 (594)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 9999553
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=3e-09 Score=99.59 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=50.7
Q ss_pred ceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccc-cccCCCcEEEecCccccccChh-hcccccc
Q 047642 559 RFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSI-GNLQCLKTMVASGNSCWKLPSQ-ISKLHQL 636 (718)
Q Consensus 559 ~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L 636 (718)
++|++|+|++|.+++ - .|..++.+++|++|+|++|+|+.+|+.+ .++++|++|+|++|.++.+|.. |.++++|
T Consensus 33 ~~L~~L~Ls~N~l~~--~---~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK--L---EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCC--C---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCCccc--c---CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence 556666777776662 1 2455666777777777777777666653 5667777777777766666654 6666666
Q ss_pred ceeee
Q 047642 637 RHLIA 641 (718)
Q Consensus 637 ~~L~l 641 (718)
++|++
T Consensus 108 ~~L~L 112 (174)
T 2r9u_A 108 THIYL 112 (174)
T ss_dssp SEEEC
T ss_pred CEEEe
Confidence 66666
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=3.9e-09 Score=98.84 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=90.5
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh-hhhcccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS-IGKLIHL 590 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~-i~~l~~L 590 (718)
+.+.+..+.+.. .+..+.++|+.|.+.+|.... ..+..|..+++|+.|+|++|.|+ . +|.. +..+++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~---~---i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIPTDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLT---A---IPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSS-CCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCC---C---CCTTTTTTCTTC
T ss_pred cEEEeCCCCCCc-cCCCcCCCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCC---c---cChhHhCCcchh
Confidence 445666555554 334457899999999998743 44678899999999999999999 5 7765 5899999
Q ss_pred cEEeeccCCccccccc-ccccCCCcEEEecCccccccChhhcccc
Q 047642 591 RYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQISKLH 634 (718)
Q Consensus 591 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~i~~L~ 634 (718)
++|+|++|.|+.+|+. +.++++|++|+|++|.+...|..+..|.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 9999999999999987 8899999999999999987776554443
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.78 E-value=2e-09 Score=121.92 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=83.9
Q ss_pred CCceEEEEEecCC-cccccccccccchhhhhcccccEEeec-------cCCcccccccccccCCCcEE-EecCccccccC
Q 047642 557 SLRFLRVLDLEDT-RIEHSGKVLRLTDSIGKLIHLRYFGFK-------CNSLVEFPRSIGNLQCLKTM-VASGNSCWKLP 627 (718)
Q Consensus 557 ~l~~L~~L~l~~~-~l~~~~~l~~~p~~i~~l~~L~~L~l~-------~~~l~~lp~~i~~l~~L~~L-~l~~~~i~~lp 627 (718)
.+++|+.|++++| .+. . +|..+..+++|++|+++ .+.+..++..+.++++|+.| .+.+.....+|
T Consensus 209 ~~~~L~~L~L~~~~~~~---~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE---K---LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HCTTCCEEECCTTSCHH---H---HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred hCCCCcEEecCCCCcHH---H---HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 3444555555544 222 2 44444455555555432 22233444445555555555 33333334566
Q ss_pred hhhccccccceeeec-ccC-----cccCCCccccccccceecc--ccchHHhcccCCCCeEEEee---------c--cc-
Q 047642 628 SQISKLHQLRHLIAR-PLG-----HLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIRE---------I--PY- 687 (718)
Q Consensus 628 ~~i~~L~~L~~L~l~-~~~-----p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~---------~--~~- 687 (718)
..+..+++|++|+++ ..+ +..+..+++|++|.+.++- ...+.....+++|+.|++.+ + ..
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 666678999999983 212 1225678999999988774 12223334689999999943 2 22
Q ss_pred cHHHHhhccCCCCeEEEeeCCCC
Q 047642 688 TNMNFILQVNSLRSLTLQTDTAF 710 (718)
Q Consensus 688 ~~~~~l~~l~~L~~L~l~~~~~~ 710 (718)
.+......+++|++|.+++|+..
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHHHHhchhHHHHHHhcCCcC
Confidence 23333345899999988776654
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1e-08 Score=95.61 Aligned_cols=97 Identities=20% Similarity=0.229 Sum_probs=69.0
Q ss_pred CcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccc-cccC
Q 047642 533 LRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSI-GNLQ 611 (718)
Q Consensus 533 l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~ 611 (718)
.+.+.+.++... .+|..+ .+.|+.|+|++|.++ .+ .|..++.+++|++|+|++|+|+.+|+.+ .+++
T Consensus 11 ~~~l~~s~n~l~-----~ip~~~--~~~l~~L~L~~N~i~---~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLA-----SVPTGI--PTTTQVLYLYDNQIT---KL--EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCS-----SCCSCC--CTTCSEEECCSSCCC---CC--CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCCCcC-----ccCccC--CCCCcEEEcCCCcCC---cc--ChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 356666666542 223222 366778888888887 41 3566788888888888888888887764 6788
Q ss_pred CCcEEEecCccccccChh-hccccccceeee
Q 047642 612 CLKTMVASGNSCWKLPSQ-ISKLHQLRHLIA 641 (718)
Q Consensus 612 ~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 641 (718)
+|++|+|++|.++.+|.. |.++++|++|++
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 888888888888887764 777888888877
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=1.2e-08 Score=95.18 Aligned_cols=106 Identities=18% Similarity=0.188 Sum_probs=85.7
Q ss_pred eEEEeecCCccccccccccccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchh-hhhcccc
Q 047642 512 RRQVIPSGNMKYVSLVHFYPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS-IGKLIHL 590 (718)
Q Consensus 512 r~l~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~-i~~l~~L 590 (718)
+.+.+..+.+.. .+..+.++++.|.+.+|.... ..+..|..+++|++|+|++|.++ . +|.. +..+++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~---~---l~~~~f~~l~~L 80 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIPTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLT---V---LPAGVFDKLTQL 80 (170)
T ss_dssp TEEECTTSCCSS-CCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCC---C---CCTTTTTTCTTC
T ss_pred CEEEeCCCCcCc-cCccCCCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcC---c---cChhhccCCCCC
Confidence 346666555555 334457899999999998743 44677899999999999999999 5 6654 6899999
Q ss_pred cEEeeccCCccccccc-ccccCCCcEEEecCccccccCh
Q 047642 591 RYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPS 628 (718)
Q Consensus 591 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~ 628 (718)
++|+|++|+|+.+|+. +.++++|++|+|++|.+.-.+.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999999885 7899999999999998775443
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.69 E-value=3.4e-08 Score=102.56 Aligned_cols=262 Identities=18% Similarity=0.095 Sum_probs=137.6
Q ss_pred CCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
-..++|++..++.+..++... ......+.|+|++|+|||++|+.+++. .... ..+++.+......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~------- 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPG------- 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHH-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChH-------
Confidence 356999999999888877531 223457889999999999999999883 2222 2333322221111
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh--hhhHHHhhCCCC------------------CC
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS--AWESLRRAFPDN------------------GN 296 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~------------------~~ 296 (718)
++...+...+ .++.+|+|||++... ..+.+...+... ..
T Consensus 79 --------------------~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 79 --------------------DLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp --------------------HHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred --------------------HHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1111111111 345688999997642 333343332211 02
Q ss_pred CcEEEEEecchhh-hhhcCCC-CceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHH
Q 047642 297 GSRIVITTRNEPV-AMITDEK-NFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWH 374 (718)
Q Consensus 297 gsriivTTR~~~v-~~~~~~~-~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~ 374 (718)
+.++|.||..... ....... ...+.+.+++.++..+++...+...... .+ .+....++..|+ ..+....
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-----~~---~~~~~~l~~~~~-G~~r~l~ 208 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-----IT---EEAALEIGRRSR-GTMRVAK 208 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-----CC---HHHHHHHHHHSC-SCHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-----CC---HHHHHHHHHHcc-CCHHHHH
Confidence 3456666664421 1111111 1478999999999999988776432221 12 234566666663 3444445
Q ss_pred HHHHHhhcccc--C----CCCch---HhHHHhcccCCChhhHHHHhhccC-CCCC----------CeecHHHHHH----H
Q 047642 375 TVKNHLWWHLT--Q----DSDHV---SPILALSYDELPYQLKSCFLYLSL-FPED----------SLIDTEKLIR----L 430 (718)
Q Consensus 375 ~~~~~~~~~~~--~----~~~~i---~~~l~~sy~~L~~~~k~cfl~la~-Fp~~----------~~i~~~~li~----~ 430 (718)
.+++....... . ....+ ...+...+..++...+..+..+.. |..+ ..+++..+.+ .
T Consensus 209 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~ 288 (324)
T 1hqc_A 209 RLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPY 288 (324)
T ss_dssp HHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHH
Confidence 55544322111 0 01111 122334455677666676665543 3222 1133333333 2
Q ss_pred HHHcCCc--CCCCCCHHHHHHHHHH-HHhhccccch
Q 047642 431 WIAEGFI--PEEEQDMENVAEEYLK-ELIDRSMIQI 463 (718)
Q Consensus 431 W~a~g~i--~~~~~~~e~~~~~~l~-~L~~rsll~~ 463 (718)
-+..|++ ...+....+.|..||+ ++.+|+|||+
T Consensus 289 ~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 289 LIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4557777 3455666777888887 8888888875
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=6.2e-09 Score=110.05 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=99.2
Q ss_pred cccCcEeeeecCCccchhhhhhhhhcc-CCceEEEEEecCCcccccccccccchh-hhhcccccEEeeccCCccccc---
Q 047642 530 YPRLRSLLFFNPDRESINIKHLQTLCS-SLRFLRVLDLEDTRIEHSGKVLRLTDS-IGKLIHLRYFGFKCNSLVEFP--- 604 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~l~~~p~~-i~~l~~L~~L~l~~~~l~~lp--- 604 (718)
.+.++.|.+.++.........+...+. ..++|+.|+|++|.+++ . -... ...+++|++|+|++|.++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~---~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--A---GLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--H---HHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--H---HHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 567788888877765433334444444 33689999999998863 2 2222 345678899999998886332
Q ss_pred --ccc-cccCCCcEEEecCccccc-----cChhhccccccceeeec-cc--------CcccCCCccccccccceecc-c-
Q 047642 605 --RSI-GNLQCLKTMVASGNSCWK-----LPSQISKLHQLRHLIAR-PL--------GHLQVSTLTNLQTLKYVNFQ-Q- 665 (718)
Q Consensus 605 --~~i-~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~-~~--------~p~~~~~l~~L~~L~~~~~~-~- 665 (718)
..+ ....+|++|+|++|.++. ++..+..+++|++|+++ .. ++..+...++|++|++.+|. +
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 222 235789999999988764 55566778888888872 11 23345556677777777776 1
Q ss_pred ----cchHHhcccCCCCeEEEeec
Q 047642 666 ----WDAVDARNLINLQELEIREI 685 (718)
Q Consensus 666 ----~~~~~l~~l~~L~~L~l~~~ 685 (718)
.....+...++|+.|++++|
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCC
Confidence 23445566777888888877
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=4.5e-08 Score=101.47 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=103.0
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-CCc-eEEEEEecCCCCHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-GFD-CRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
...++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++. +.. .+. ..+++..+..... ..+++++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccCh-HHHHHHHH
Confidence 3468999999999999987654 223899999999999999999984 211 111 1233332222121 11111111
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchhh-hhhc
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEPV-AMIT 313 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~v-~~~~ 313 (718)
.+... ...+ .+++.+||+||++.. ..++.+...+.....++++|+||+...- ....
T Consensus 95 ~~~~~--------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 95 HFAQK--------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HHHHB--------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHhc--------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 11100 0011 346889999999863 3455555555444567888888876432 1111
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
......+++.+++.++..+++...+...... .+ .+....|++.|+
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-----~~---~~~~~~l~~~~~ 199 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-----YT---NDGLEAIIFTAE 199 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-----BC---HHHHHHHHHHHT
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCC-----CC---HHHHHHHHHHcC
Confidence 1222579999999999999998765322111 11 234566777774
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=5e-08 Score=101.56 Aligned_cols=95 Identities=12% Similarity=-0.067 Sum_probs=60.2
Q ss_pred cCCCcEEEecCccccccChh-hccccccceeeec---ccC-cccCCCccccc-cccceecc-ccchHHhcccCCCCeEEE
Q 047642 610 LQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR---PLG-HLQVSTLTNLQ-TLKYVNFQ-QWDAVDARNLINLQELEI 682 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~---~~~-p~~~~~l~~L~-~L~~~~~~-~~~~~~l~~l~~L~~L~l 682 (718)
+++|+.|+|++|+++.+|.. |.++.+|+.|.+. ..+ +..+..+++|+ .|.+...- ......|.++++|+.|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEe
Confidence 56778888887777777765 6777788877772 112 23356666776 66654421 334556777777777777
Q ss_pred eec-cccH-HHHhhccCCCCeEEE
Q 047642 683 REI-PYTN-MNFILQVNSLRSLTL 704 (718)
Q Consensus 683 ~~~-~~~~-~~~l~~l~~L~~L~l 704 (718)
..+ ...+ +..|.++++|+.|+.
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCccCccchhhhcCCcchhhhcc
Confidence 655 3333 346777777777753
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.54 E-value=4e-07 Score=92.69 Aligned_cols=170 Identities=11% Similarity=0.062 Sum_probs=104.2
Q ss_pred ceeeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhcCccccC---CCc--eEEEEEecCCCCHHHHHHH
Q 047642 162 QVVGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVNSTDVKG---GFD--CRAWVCVTQEYTTRDLLQK 234 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~~l~~ 234 (718)
.+.||++++++|...|... ......+.|+|++|+|||++|+.|++...... ... ..+.++.....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888653 34567889999999999999999998532111 111 3556666677788899999
Q ss_pred HHHHhcCCcccchHHhhhcCHHHHHHHHHHH--hcCceEEEEEecCCChhhhhHHHhhCCCC-CCCcE--EEEEecchhh
Q 047642 235 TIKSFQKPKIEDLELMERMTEEDLELHLYEF--LEGRRYLVVVDDIWHKSAWESLRRAFPDN-GNGSR--IVITTRNEPV 309 (718)
Q Consensus 235 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--L~~k~~LlVLDdv~~~~~~~~l~~~l~~~-~~gsr--iivTTR~~~v 309 (718)
|++++.+.... .....+.+...+... -.+++++||||+++....-+.+...+.+. ..+++ ||.++...+.
T Consensus 101 I~~~L~g~~~~-----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 101 IWFAISKENLC-----GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHSCCC-------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHhcCCCCC-----chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999764221 111223333333332 24578999999998653222222222110 12232 3334433322
Q ss_pred ---------hhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 310 ---------AMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 310 ---------~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
...+. ...+.+.+++.++-.+++..++
T Consensus 176 ~~~~L~~~v~SR~~--~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKAH--FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHTT--EEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC--ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 1468899999999999888765
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.49 E-value=8.6e-08 Score=90.91 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=39.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-..++||++.++++.+.+.... ...+.|+|++|+||||||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999987643 456789999999999999999884
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.47 E-value=1.3e-07 Score=99.08 Aligned_cols=86 Identities=19% Similarity=0.121 Sum_probs=41.2
Q ss_pred cccCcEeeeec-CCccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccccccccc
Q 047642 530 YPRLRSLLFFN-PDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIG 608 (718)
Q Consensus 530 ~~~l~~L~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~ 608 (718)
+++|+.|.+.+ |.+.. .++..|..+++|+.|+|++|.|++ - .|..|+.|++|++|+|++|+|+.+|+.+.
T Consensus 30 ~~~L~~L~l~~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~--~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 30 AENLTELYIENQQHLQH----LELRDLRGLGELRNLTIVKSGLRF--V---APDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp CSCCSEEECCSCSSCCE----ECGGGSCSCCCCSEEECCSSCCCE--E---CTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred CCCeeEEEccCCCCCCC----cChhHhccccCCCEEECCCCccce--e---CHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 44455555553 44321 223445555555555555555552 1 22344555555555555555555554443
Q ss_pred ccCCCcEEEecCcccc
Q 047642 609 NLQCLKTMVASGNSCW 624 (718)
Q Consensus 609 ~l~~L~~L~l~~~~i~ 624 (718)
....|+.|+|++|.+.
T Consensus 101 ~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCCEEECCSSCCC
T ss_pred ccCCceEEEeeCCCcc
Confidence 3333555555555443
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2.6e-07 Score=95.85 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=93.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|+++.++.+..++..+. ...+.|+|++|+||||+|+.+++. +........++.+... +....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~-~~~~~--------- 90 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNAS-DERGI--------- 90 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETT-CHHHH---------
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeecc-ccCch---------
Confidence 458999999999999887764 334899999999999999999984 2111111112222211 10000
Q ss_pred CCcccchHHhhhcCHHHHHHHHHHH--h-cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchhh-hhhcC
Q 047642 241 KPKIEDLELMERMTEEDLELHLYEF--L-EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEPV-AMITD 314 (718)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~v-~~~~~ 314 (718)
. ...+........ + .+++.+||+||++.. +.++.+...+.....++++|+||....- .....
T Consensus 91 ----------~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 91 ----------N--VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp ----------H--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred ----------H--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 0 000000001110 1 256889999999854 4566666666555567888888876532 11111
Q ss_pred CCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 315 EKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 315 ~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.....+++.+++.++..+++...+..
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~ 184 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAEN 184 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHh
Confidence 11247899999999999998877643
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=4.1e-07 Score=95.29 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=73.5
Q ss_pred hhhhhhccCCceEEEEEecC-Ccccccccccccc-hhhhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccc
Q 047642 549 KHLQTLCSSLRFLRVLDLED-TRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWK 625 (718)
Q Consensus 549 ~~~~~~~~~l~~L~~L~l~~-~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~ 625 (718)
..+|. +..+++|+.|+|++ |.|+ . +| ..|+.|++|++|+|++|+|+.+|+ .+.+|++|+.|+|++|.++.
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~---~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQ---H---LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCC---E---ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CccCC-CCCCCCeeEEEccCCCCCC---C---cChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce
Confidence 34566 88999999999996 9998 5 55 679999999999999999998876 46899999999999999999
Q ss_pred cChhhccccccceeee
Q 047642 626 LPSQISKLHQLRHLIA 641 (718)
Q Consensus 626 lp~~i~~L~~L~~L~l 641 (718)
+|..+....+|++|++
T Consensus 95 ~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 95 LSWKTVQGLSLQELVL 110 (347)
T ss_dssp CCSTTTCSCCCCEEEC
T ss_pred eCHHHcccCCceEEEe
Confidence 9987654445999988
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=9.1e-08 Score=101.02 Aligned_cols=147 Identities=13% Similarity=0.071 Sum_probs=102.2
Q ss_pred ceeEEEeecCCccccccccc-------cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccch
Q 047642 510 LTRRQVIPSGNMKYVSLVHF-------YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTD 582 (718)
Q Consensus 510 ~~r~l~l~~~~~~~~~~~~~-------~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~ 582 (718)
..+.+.+..+.+.......+ .++|+.|.+.+|..... ........+++|+.|+|++|.+++ . -..
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~---~~~~l~~~L~~L~~L~Ls~n~l~~--~---~~~ 144 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA---GLRTLLPVFLRARKLGLQLNSLGP--E---ACK 144 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH---HHHHTHHHHHTEEEEECCSSCCCH--H---HHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH---HHHHHHHHHHhccHhhcCCCCCCH--H---HHH
Confidence 45667777666554222221 36899999998876432 223344456789999999999873 2 223
Q ss_pred hhh-----hcccccEEeeccCCccc-----ccccccccCCCcEEEecCccccc-----cChhhccccccceeeec-cc--
Q 047642 583 SIG-----KLIHLRYFGFKCNSLVE-----FPRSIGNLQCLKTMVASGNSCWK-----LPSQISKLHQLRHLIAR-PL-- 644 (718)
Q Consensus 583 ~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~-~~-- 644 (718)
.++ ..++|++|+|++|.|+. ++..+..+++|++|+|++|.+.. ++..+...++|++|+++ ..
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 332 35789999999999864 56666788999999999998763 46667888899999983 22
Q ss_pred ------CcccCCCccccccccceecc
Q 047642 645 ------GHLQVSTLTNLQTLKYVNFQ 664 (718)
Q Consensus 645 ------~p~~~~~l~~L~~L~~~~~~ 664 (718)
++..+...++|++|++..|.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 22234456889999998887
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.35 E-value=1e-06 Score=89.47 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=90.7
Q ss_pred CCCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 159 GNEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
.-.+++|.++.+++|.+.+... -....-+.|+|++|+|||+||+.+++. ....| +.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH-
Confidence 3456899999999998877431 123456899999999999999999984 32221 222221110
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh----------------hhhhHHHhhC
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK----------------SAWESLRRAF 291 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l 291 (718)
..... .....+...+......++.+|+|||++.. ..+..+...+
T Consensus 89 -------------~~~~~-------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 89 -------------KKFIG-------EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp -------------CCSTT-------HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred -------------Hhccc-------hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 00000 00111222223333456689999999643 1122222222
Q ss_pred C--CCCCCcEEEEEecchhhhhh--cC--CCCceeeccCCCHHhHHHHHHhhhCCC
Q 047642 292 P--DNGNGSRIVITTRNEPVAMI--TD--EKNFVYKLRFLNQEESWKLFCKKAFPD 341 (718)
Q Consensus 292 ~--~~~~gsriivTTR~~~v~~~--~~--~~~~~~~l~~L~~~es~~Lf~~~af~~ 341 (718)
. ....+..||.||........ .. -....+.++..+.++..++|...+...
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM 204 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC
Confidence 2 12345677888875533210 11 112468899999999999998876543
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=5.1e-07 Score=94.54 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=41.4
Q ss_pred cccCcEeeeecCCccc--hhh---hhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccc-c
Q 047642 530 YPRLRSLLFFNPDRES--INI---KHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE-F 603 (718)
Q Consensus 530 ~~~l~~L~~~~~~~~~--~~~---~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~-l 603 (718)
+++|++|.+.+..... ..+ ..+...+..+++|+.|+|++|.-. . +|. + .+++|+.|+|.++.+.. .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~---l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---S---IGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---B---CCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---e---ecc-c-cCCCCcEEEEecCCCChHH
Confidence 6677777765432210 000 123344556666777777665311 2 333 3 25667777776655541 1
Q ss_pred ccccc--ccCCCcEEEec
Q 047642 604 PRSIG--NLQCLKTMVAS 619 (718)
Q Consensus 604 p~~i~--~l~~L~~L~l~ 619 (718)
...++ ++++|+.|+|+
T Consensus 210 l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHHSBCTTCCEEEEE
T ss_pred HHHHHHccCCCCcEEEEe
Confidence 11222 56667776664
No 165
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=2.2e-06 Score=89.03 Aligned_cols=95 Identities=11% Similarity=-0.032 Sum_probs=78.7
Q ss_pred cccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-hccccccc-eeeec---ccC-cccCCCcccccccc
Q 047642 587 LIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLR-HLIAR---PLG-HLQVSTLTNLQTLK 659 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~-~L~l~---~~~-p~~~~~l~~L~~L~ 659 (718)
+++|+.|+|+.|+++.+|+. +.++.+|+.|++++| ++.++.. |.++.+|+ .+.+. ..+ +..+..+++|+.|.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEE
Confidence 78999999999999999986 678999999999987 8888765 89999999 99882 222 45688899999998
Q ss_pred ceecc--ccchHHhcccCCCCeEEE
Q 047642 660 YVNFQ--QWDAVDARNLINLQELEI 682 (718)
Q Consensus 660 ~~~~~--~~~~~~l~~l~~L~~L~l 682 (718)
+..+. ......|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 76665 445568999999998863
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.24 E-value=4.5e-06 Score=88.21 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=92.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+.+.......+.. ..+..-.....+....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~- 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR- 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC-
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC-
Confidence 359999999999999987653 2357889999999999999999874321111100 0000000011111000
Q ss_pred CCcccchHH---hhhcCHHHHHHHHHHH-hcCceEEEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEEecchh-hhhhc
Q 047642 241 KPKIEDLEL---MERMTEEDLELHLYEF-LEGRRYLVVVDDIWH--KSAWESLRRAFPDNGNGSRIVITTRNEP-VAMIT 313 (718)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~l~~~l~~~-L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~ 313 (718)
......... .......++...+... ..+++.+||+||++. ...++.+...+.....+..+|++|.... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 000000000 0001112222111110 134678999999975 3456666666655455677777776443 21111
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
......+++.+++.++..+++...+
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHH
Confidence 1222678999999999998888655
No 167
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.21 E-value=2.7e-06 Score=87.76 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=93.1
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCHHHHHHHHHHHh
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.+++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++... ...+. ..+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~--------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV--------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT---------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH---------
Confidence 468999999999988886643 23389999999999999999988411 11111 122233222111000
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHH--h-cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhc
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEF--L-EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMIT 313 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~--L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~ 313 (718)
..+....+... + .+++.+||+||++.. +..+.+...+.....+.++|+||.... +....
T Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 85 ---------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp ---------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred ---------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 00111111111 1 256789999999754 445666666665556788888886554 21111
Q ss_pred CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 314 DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 314 ~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
......+++.+++.++..+++...+..
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~ 176 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEK 176 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHH
Confidence 112257899999999999888876643
No 168
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=2.2e-05 Score=78.41 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=84.2
Q ss_pred CCceeeccccHHHHHHHHh---cCC-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLL---KDE-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.++.++.+.+++. ... ...+.|.|+|++|+|||++|+.+++. ....| +.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEechHHHHhh-
Confidence 3468999888877766542 211 23456889999999999999999984 33222 23333221110
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-----------------hhhhHHHhhCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-----------------SAWESLRRAFP 292 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~l~ 292 (718)
.. . .....+...+.......+.+|+|||++.. ..+..+...+.
T Consensus 79 ---------~~---~--------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 79 ---------IG---G--------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp ---------ST---T--------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH
T ss_pred ---------cc---C--------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh
Confidence 00 0 00112222233333456789999999853 11223333222
Q ss_pred C--CCCCcEEEEEecchhhhh--hcC--CCCceeeccCCCHHhHHHHHHhhhC
Q 047642 293 D--NGNGSRIVITTRNEPVAM--ITD--EKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 293 ~--~~~gsriivTTR~~~v~~--~~~--~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
. ...+..||.||....... ... -....+.++..+.++-.+++...+.
T Consensus 139 ~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 139 GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 2 123456666776544211 111 1125677889999999998887664
No 169
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.18 E-value=2.7e-06 Score=87.46 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=88.7
Q ss_pred ceeeccccHHHHHHHHhcC-------------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 162 QVVGFEENTKMLIKQLLKD-------------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.++|.+..++.|.+.+... ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 4889998888887665421 233457899999999999999988874221222111223333311
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCC-----------ChhhhhHHHhhCCCCCCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIW-----------HKSAWESLRRAFPDNGNG 297 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~-----------~~~~~~~l~~~l~~~~~g 297 (718)
.+..... ......+...+... +.-+|+||+++ +......+...+.....+
T Consensus 109 ---------~l~~~~~-------g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 ---------DLVGQYI-------GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp ---------GTCCSST-------TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred ---------Hhhhhcc-------cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 1111000 00011122222222 34599999998 334455666555555556
Q ss_pred cEEEEEecchhh----------hhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 298 SRIVITTRNEPV----------AMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 298 sriivTTR~~~v----------~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
..||.||..... ...+ ...+.+++++.++-.+++...+-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRI---AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHE---EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhC---CeEEEcCCcCHHHHHHHHHHHHH
Confidence 788888864332 2222 15789999999999988877664
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=7.1e-06 Score=87.36 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=86.0
Q ss_pred hhccCCceEEEEEecCCcccccccccccchh-----------------------hhhcccccEEeeccCCcccccccccc
Q 047642 553 TLCSSLRFLRVLDLEDTRIEHSGKVLRLTDS-----------------------IGKLIHLRYFGFKCNSLVEFPRSIGN 609 (718)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~-----------------------i~~l~~L~~L~l~~~~l~~lp~~i~~ 609 (718)
..|.++++|+.+++.+|.++ . +|.. |.++++|+.+.+..+ ++.++.....
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~---~---I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKIT---K---LPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp STTTTCTTCCEEECTTSCCS---E---ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred HHhhCcccCCeeecCCCcce---E---echhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence 45666666666666666555 3 4432 334444444444432 3444433222
Q ss_pred cCCCcEEEecCccccccCh-hhccccccceeeecc----------cCcccCCCccccccccceecc-ccchHHhcccCCC
Q 047642 610 LQCLKTMVASGNSCWKLPS-QISKLHQLRHLIARP----------LGHLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINL 677 (718)
Q Consensus 610 l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~----------~~p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L 677 (718)
-.+|+.+.+ .++++.++. .|.++++|+.+.+.. ..+..+..+++|+.+.+.+.- ......|.++++|
T Consensus 247 ~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 247 ESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKV 325 (401)
T ss_dssp TCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSC
T ss_pred cCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCc
Confidence 245555555 234555543 467778888887621 122346677778777765322 3345568888899
Q ss_pred CeEEEeeccc-cHHHHhhccCCCCeEEEeeCCC
Q 047642 678 QELEIREIPY-TNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 678 ~~L~l~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+.|.+..+.. .-..+|.++ +|+.|++.+|..
T Consensus 326 ~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 326 TQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred cEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 9998877632 234567888 999999988754
No 171
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.12 E-value=9.2e-06 Score=86.50 Aligned_cols=184 Identities=7% Similarity=0.088 Sum_probs=123.6
Q ss_pred CceeEEEeecCCccccccccc-cccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCcccccccccccc-hhhhh
Q 047642 509 SLTRRQVIPSGNMKYVSLVHF-YPRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGK 586 (718)
Q Consensus 509 ~~~r~l~l~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~ 586 (718)
...+.+.+..+.+..+....+ ..+|+.+.+.++ . .......|.++++|+.+++..+ ++ . ++ ..|.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l----~~I~~~aF~~~~~L~~l~l~~~-l~---~---I~~~aF~~ 247 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L----KEIGSQAFLKTSQLKTIEIPEN-VS---T---IGQEAFRE 247 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C----CEECTTTTTTCTTCCCEECCTT-CC---E---ECTTTTTT
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-h----heehhhHhhCCCCCCEEecCCC-cc---C---cccccccc
Confidence 345555555444444333333 556666666433 1 1233467888889999998864 44 4 55 34555
Q ss_pred cccccEEeeccCCccccccc-ccccCCCcEEEecCcccc-----ccCh-hhccccccceeeec---ccC-cccCCCcccc
Q 047642 587 LIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCW-----KLPS-QISKLHQLRHLIAR---PLG-HLQVSTLTNL 655 (718)
Q Consensus 587 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~-----~lp~-~i~~L~~L~~L~l~---~~~-p~~~~~l~~L 655 (718)
.+|+.+.+. +.++.++.. +.++.+|+.+++.+|.+. .++. .|.++++|+.+.+. ..+ ...+..+++|
T Consensus 248 -~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 -SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKV 325 (401)
T ss_dssp -CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSC
T ss_pred -CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCc
Confidence 789999994 558888654 678999999999988665 5655 48899999999882 222 3346778889
Q ss_pred ccccceecc-ccchHHhcccCCCCeEEEeec-ccc-HHHHhhcc-CCCCeEEEeeC
Q 047642 656 QTLKYVNFQ-QWDAVDARNLINLQELEIREI-PYT-NMNFILQV-NSLRSLTLQTD 707 (718)
Q Consensus 656 ~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~-~~~-~~~~l~~l-~~L~~L~l~~~ 707 (718)
+.+.+..+- ......|.++ +|+.|.+.++ ... ....+..+ .+++.|++-.+
T Consensus 326 ~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 326 TQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred cEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 888874332 3345678889 9999999988 222 23446666 47889988764
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=8e-06 Score=88.02 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=87.4
Q ss_pred Ccee-eccccH--HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc--eEEEEEecCCCCHHHHHHHH
Q 047642 161 EQVV-GFEENT--KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD--CRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~l~~i 235 (718)
..|| |..... ..+......... ...+.|+|++|+||||||+.+++. ....|. ..++++. ..+..++
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~ 175 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHH
Confidence 3455 644432 233333333322 567899999999999999999984 332222 2344432 2334444
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh----hhhHHHhhCCC-CCCCcEEEEEecchh--
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS----AWESLRRAFPD-NGNGSRIVITTRNEP-- 308 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gsriivTTR~~~-- 308 (718)
...+.... .. .+...+..+.-+|+|||++... ..+.+...+.. ...|..||+||.+..
T Consensus 176 ~~~~~~~~-----------~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 176 VDSMKEGK-----------LN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHTTC-----------HH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHccc-----------HH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 44433211 11 1233344367799999997432 22333333321 235678999887632
Q ss_pred -------hhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 309 -------VAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 309 -------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
+...+... ..+.+++++.++-.+++.+.+.
T Consensus 241 l~~l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMG-LVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CSSCCHHHHHHHHSS-BCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCC-eEEEeCCCCHHHHHHHHHHHHH
Confidence 22223222 4688999999999998887763
No 173
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=7.8e-06 Score=73.55 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=36.0
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888643222345789999999999999999984
No 174
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=5.5e-06 Score=86.66 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred cchhhhhcccccEEeeccCCcccccccccccCCCcEEEecCccccc-cChhhc--cccccceeeecc--cC------c--
Q 047642 580 LTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWK-LPSQIS--KLHQLRHLIARP--LG------H-- 646 (718)
Q Consensus 580 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~--~L~~L~~L~l~~--~~------p-- 646 (718)
++..+..+++|+.|+|+++.-..+|+ + .+++|++|+|..|.+.. ....+. .+++|++|++.. .. .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 33445566667777776653223443 3 26667777776655431 111222 566666666510 00 0
Q ss_pred --ccC--CCccccccccceecc--ccchHHh---cccCCCCeEEEeec--c----ccHHHHhhccCCCCeEEEeeCCC
Q 047642 647 --LQV--STLTNLQTLKYVNFQ--QWDAVDA---RNLINLQELEIREI--P----YTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 647 --~~~--~~l~~L~~L~~~~~~--~~~~~~l---~~l~~L~~L~l~~~--~----~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
..+ ..+++|+.|.+.++. ...+..+ ..+++|+.|+++.| . ..++..+.++++|+.|+|++|..
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 011 235566666665554 1111222 24666777777666 1 12344445666777777766643
No 175
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=4.5e-05 Score=78.69 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=88.7
Q ss_pred CCCceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 159 GNEQVVGFEENTKMLIKQLLK----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.-.+++|.++.++.|.+.+.. .....+-|.|+|++|+|||+||+++++. .... ++.++.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~-----~~~v~~---- 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSS---- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE-----EEEEEH----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC-----EEEEch----
Confidence 345789999999999887731 1123457899999999999999999984 3222 222211
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh-------------hhhHHHhhCC---
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS-------------AWESLRRAFP--- 292 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~--- 292 (718)
.. +..... . .....+...+...-..++.+|+||+++... ....+...+.
T Consensus 85 ~~----l~~~~~---g--------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 85 SD----LVSKWM---G--------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp HH----HHTTTG---G--------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred HH----Hhhccc---c--------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 11 111100 0 001111222222234567899999997431 1233333332
Q ss_pred CCCCCcEEEEEecchhhh-----hhcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 293 DNGNGSRIVITTRNEPVA-----MITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 293 ~~~~gsriivTTR~~~v~-----~~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
....+..||.||...... ..+ ...+.+...+.++-.++|..++..
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf---~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRF---ERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHC---CEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEecCChhhCCHHHHccc---CeEEEeCCCCHHHHHHHHHHHhcc
Confidence 233456666677654321 221 246788889999999999987754
No 176
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=4.5e-06 Score=82.80 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=66.8
Q ss_pred ccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccccccccC--CCcEEEecCcccc-ccCh---
Q 047642 555 CSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRSIGNLQ--CLKTMVASGNSCW-KLPS--- 628 (718)
Q Consensus 555 ~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~i~-~lp~--- 628 (718)
..++++|+.|+|++|.|+ .+..+|..++.+++|++|+|++|.|+.+. .+..+. +|+.|+|++|.+. .+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~---~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLY---RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHCTTCCEEECTTSCCC---CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HhhCCCCCEEECCCCCCC---CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchh
Confidence 356889999999999998 43336778889999999999999999874 456665 9999999999887 4552
Q ss_pred ----hhccccccceeee
Q 047642 629 ----QISKLHQLRHLIA 641 (718)
Q Consensus 629 ----~i~~L~~L~~L~l 641 (718)
.+..+++|+.|+-
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 3678888888874
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.97 E-value=2.5e-05 Score=84.06 Aligned_cols=146 Identities=20% Similarity=0.211 Sum_probs=83.4
Q ss_pred CceeeccccH---HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENT---KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
..+||.+..+ ..+...+..+. ...+.|+|++|+||||||+.+.+. .... ++.++.......-++.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEIREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHHHHHHH
Confidence 4688988777 66777776654 467899999999999999999984 3222 3333322111111111111
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEE-Eecchh--hhhh
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVI-TTRNEP--VAMI 312 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriiv-TTR~~~--v~~~ 312 (718)
.. ......+++.+|+||+++.. ...+.+...+.. + ...+|. ||.+.. +...
T Consensus 97 ~a----------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 97 RA----------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH----------------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HH----------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 10 01112467889999999864 334444444442 1 233333 444442 1111
Q ss_pred cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.-....++.+.+++.++-.+++.+.+-
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 111225788999999999998887654
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=5.9e-05 Score=77.90 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhh
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELME 251 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~ 251 (718)
.+..++..+......+.|+|++|+||||||+.+++. ....-...++++. ..+...+...+...
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~~~~~--------- 87 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEHLKKG--------- 87 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHHHHHT---------
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHHHHcC---------
Confidence 344444443323567899999999999999999984 2111112344432 23333333332211
Q ss_pred hcCHHHHHHHHHHHhcCceEEEEEecCCChh----hhhHHHhhCCC-CCCCcEEEEEecchh---------hhhhcCCCC
Q 047642 252 RMTEEDLELHLYEFLEGRRYLVVVDDIWHKS----AWESLRRAFPD-NGNGSRIVITTRNEP---------VAMITDEKN 317 (718)
Q Consensus 252 ~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gsriivTTR~~~---------v~~~~~~~~ 317 (718)
.... +...+. +.-+|+|||+.... ..+.+...+.. ...|..||+||.... +...+...
T Consensus 88 --~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~- 159 (324)
T 1l8q_A 88 --TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG- 159 (324)
T ss_dssp --CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS-
T ss_pred --cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc-
Confidence 1111 122222 36699999997542 22333333221 124567888876432 12222221
Q ss_pred ceeeccCCCHHhHHHHHHhhhC
Q 047642 318 FVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 318 ~~~~l~~L~~~es~~Lf~~~af 339 (718)
..+++++ +.++..+++...+.
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHH
Confidence 4689999 99999999888764
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.95 E-value=3.2e-05 Score=77.69 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=82.0
Q ss_pred CceeeccccHHHHHHH-------HhcC-CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHH
Q 047642 161 EQVVGFEENTKMLIKQ-------LLKD-EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLL 232 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~-------L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 232 (718)
..++|.....++++.. +... ......+.|+|++|+|||+||+.+++. ....| +.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-------
Confidence 3578888877777663 3222 345678999999999999999999984 22221 22222210
Q ss_pred HHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh------------hhhhHHHhhCCC---CCCC
Q 047642 233 QKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK------------SAWESLRRAFPD---NGNG 297 (718)
Q Consensus 233 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~------------~~~~~l~~~l~~---~~~g 297 (718)
+.+... ......+...+......+..+|+|||++.. ...+.+...+.. .+..
T Consensus 101 ------~~g~~~-------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 167 (272)
T 1d2n_A 101 ------MIGFSE-------TAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK 167 (272)
T ss_dssp ------CTTCCH-------HHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE
T ss_pred ------hcCCch-------HHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC
Confidence 111000 000112222333334467889999998642 122334343332 2234
Q ss_pred cEEEEEecchhhhhh---cCCCCceeeccCCCH-HhHHHHHHh
Q 047642 298 SRIVITTRNEPVAMI---TDEKNFVYKLRFLNQ-EESWKLFCK 336 (718)
Q Consensus 298 sriivTTR~~~v~~~---~~~~~~~~~l~~L~~-~es~~Lf~~ 336 (718)
..||.||........ .......+.+++++. ++-.+++..
T Consensus 168 ~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 168 LLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred EEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh
Confidence 456777776644332 111135678888887 555555554
No 180
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.95 E-value=0.00025 Score=72.90 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=97.9
Q ss_pred CCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.++.++.|.+.+... ....+-|.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~----~~~~~~i~~~~--- 81 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD--- 81 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT----SCEEEEEECCS---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC----CCcEEEEEhHH---
Confidence 456899999888888776321 123467899999999999999999984 21 11233332210
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh-------------hhhHHHhhCCC---
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS-------------AWESLRRAFPD--- 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~~--- 293 (718)
+..... ......+...+...-..++.+|+||+++... ....+...+..
T Consensus 82 ---------l~~~~~-------g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 82 ---------LVSKWL-------GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp ---------SCCSSC-------CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred ---------HHhhhh-------hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 000000 0111122222222234577899999997540 11223222221
Q ss_pred CCCCcEEEEEecchhhhh-hc-CCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChh
Q 047642 294 NGNGSRIVITTRNEPVAM-IT-DEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPH 371 (718)
Q Consensus 294 ~~~gsriivTTR~~~v~~-~~-~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~ 371 (718)
...+..||.||....... .. .-....+.+...+.++-.+++..+.-..... .+ ......|++.+.+-...
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-----l~---~~~l~~la~~t~G~sga 217 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-----LT---EADFRELGRKTDGYSGA 217 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-----CC---HHHHHHHHHTCTTCCHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-----CC---HHHHHHHHHHcCCCCHH
Confidence 234455666665442211 00 0112567888889898889888776432211 11 22345556655544444
Q ss_pred HHHHHHH
Q 047642 372 EWHTVKN 378 (718)
Q Consensus 372 ~w~~~~~ 378 (718)
+...+++
T Consensus 218 dl~~l~~ 224 (322)
T 1xwi_A 218 DISIIVR 224 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.95 E-value=2.7e-06 Score=83.80 Aligned_cols=143 Identities=14% Similarity=0.095 Sum_probs=78.7
Q ss_pred Cceeecc---ccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFE---ENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
..++|.+ ..++.+..+.... ....+.|+|++|+||||||+.+++. .........|++.+.-...
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--------- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--------- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---------
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---------
Confidence 4577643 3334444444432 3567899999999999999999984 3222334566654331100
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh--h--hhHHHhhCCCC-CCC-cEEEEEecchh---
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS--A--WESLRRAFPDN-GNG-SRIVITTRNEP--- 308 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~--~--~~~l~~~l~~~-~~g-sriivTTR~~~--- 308 (718)
+ . .. + +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...
T Consensus 95 -~----~------~~---------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 -S----T------AL---------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -C----G------GG---------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred -H----H------HH---------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 0 00 0 011 345689999997542 1 23333332211 112 25778776432
Q ss_pred ------hhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 309 ------VAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 309 ------v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
+...+.. ...+++.+++.++..+++...+.
T Consensus 153 ~~~~~~l~~r~~~-~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 153 GFVLPDLVSRMHW-GLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp TCCCHHHHHHHHH-SEEEECCCCCGGGHHHHHHHHHH
T ss_pred HHhhhhhhhHhhc-CceEEeCCCCHHHHHHHHHHHHH
Confidence 1111111 15789999999999999887663
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.94 E-value=2.1e-05 Score=81.36 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=85.3
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.+++|.++.++.+.+++..+. ...++.+.|++|+||||+|+.+.+. .. ...+.++.+. .. ...+++.+...
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~~~~~~ 96 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRGPLTNF 96 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHTHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHHHHHHH
Confidence 3568999999999999988653 3457888899999999999999984 22 1233344322 11 11122211111
Q ss_pred cCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh---hhhHHHhhCCCCCCCcEEEEEecchhh-hhhcCC
Q 047642 240 QKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS---AWESLRRAFPDNGNGSRIVITTRNEPV-AMITDE 315 (718)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~---~~~~l~~~l~~~~~gsriivTTR~~~v-~~~~~~ 315 (718)
... ....+++-+||+||++... ..+.+...+.....+.++|+||....- ......
T Consensus 97 ~~~---------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 97 ASA---------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHB---------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred Hhh---------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 000 0012467899999998653 445555444433346778888876541 111101
Q ss_pred CCceeeccCCCHHhHHH
Q 047642 316 KNFVYKLRFLNQEESWK 332 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~ 332 (718)
....+++++++.++-.+
T Consensus 156 R~~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIE 172 (324)
T ss_dssp HSEEEECCCCCHHHHHH
T ss_pred hCcEEEeCCCCHHHHHH
Confidence 11468888999887433
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.93 E-value=3.9e-05 Score=80.78 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCceeeccccHHH---HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKM---LIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+||++..++. +.+.+..+....+.+.|+|++|+|||++|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999988776 45555554433468999999999999999999984
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.93 E-value=0.00019 Score=73.07 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=89.6
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.+++|.++.++++.+.+... -...+.|.|+|++|+|||+||+.+++. .... ++.++ .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 346899999888888776431 123467899999999999999999984 3222 23332 2
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh----------------hhhHHHhhCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS----------------AWESLRRAFP 292 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~ 292 (718)
..+.. ...+... ..+...+.......+.+|+||+++... ....+...+.
T Consensus 83 ~~l~~----~~~g~~~-----------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 83 PELLT----MWFGESE-----------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHHH----HHHTTCT-----------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred HHHHh----hhcCchH-----------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 22222 2111111 112222333334567899999997421 1233333332
Q ss_pred C--CCCCcEEEEEecchhhhh--hcC--CCCceeeccCCCHHhHHHHHHhhhC
Q 047642 293 D--NGNGSRIVITTRNEPVAM--ITD--EKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 293 ~--~~~gsriivTTR~~~v~~--~~~--~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
. ...+..||.||....... ... -....+.+...+.++-.+++....-
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 1 223566777776553221 111 1225688899999998888877654
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=3.2e-05 Score=81.05 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=86.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc--ccC--CCceEE------------------
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD--VKG--GFDCRA------------------ 218 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~--~F~~~~------------------ 218 (718)
.+++|.+..++.+..++........ +.|+|+.|+||||+|+.+..... -.+ .++...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 4689999888888887733322334 89999999999999998877310 000 011000
Q ss_pred EEEecCCC-C--HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCC
Q 047642 219 WVCVTQEY-T--TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPD 293 (718)
Q Consensus 219 wv~vs~~~-~--~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~ 293 (718)
++.+.... . .....++++..+...... .... .+. .+.+++-++|||++... ...+.+...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQV----------DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccc----------cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 11111000 0 000122222222111000 0000 000 02346679999999864 234445544433
Q ss_pred CCCCcEEEEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 NGNGSRIVITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 ~~~gsriivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+..+|++|.+.. +..........+++.+++.++..+.+...+-
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 344677888877643 2222222226789999999999988887653
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.87 E-value=0.00015 Score=75.70 Aligned_cols=152 Identities=15% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.++.++.|.+.+... ....+-|.|+|++|+|||+||+.+++. ....| +.+.. .
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~------~ 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeH------H
Confidence 346899999999998877321 112346889999999999999999984 32222 12221 1
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh-------------hhhHHHhhCC---C
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS-------------AWESLRRAFP---D 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~---~ 293 (718)
++ .....+ .....+...+...-..++.+|+||+++... ....+...+. .
T Consensus 119 ~l----~~~~~g-----------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 119 DL----VSKWMG-----------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp HH----HSCC--------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred HH----hhhhcc-----------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 11 111000 011112222222234578899999997531 1223332222 2
Q ss_pred CCCCcEEEEEecchh-----hhhhcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 294 NGNGSRIVITTRNEP-----VAMITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 294 ~~~gsriivTTR~~~-----v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
...+..||.||.... +...+ ...+.+...+.++-.+++..++..
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf---~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRF---ERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTC---CEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEeecCCcccCCHHHHccc---CEEEEeCCcCHHHHHHHHHHHHhh
Confidence 234556666776542 22211 256788889999999999877654
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.86 E-value=0.00011 Score=76.75 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=85.6
Q ss_pred CCCceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 159 GNEQVVGFEENTKMLIKQLLK----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+.+++. .... .+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc-
Confidence 335689999999999887753 1123567899999999999999999984 2221 22333322111
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCCC--
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPD-- 293 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~-- 293 (718)
.... .....+...+...-..++.+|+||+++.. .....+...+..
T Consensus 156 -------------~~~g-------~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 156 -------------KWVG-------EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp -------------SSTT-------HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred -------------cccc-------hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 0000 00011111122222356789999999532 112333333321
Q ss_pred --CCCCcEEEEEecchhhh-hhc-CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 --NGNGSRIVITTRNEPVA-MIT-DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 --~~~gsriivTTR~~~v~-~~~-~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+..||.||...... ... .-....+.+...+.++..+++...+-
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 12344566566543211 111 11124678888888888888877653
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=1e-05 Score=84.76 Aligned_cols=186 Identities=12% Similarity=0.145 Sum_probs=99.5
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCc-eEEEEEecCCCCHHHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFD-CRAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
-..++|+++.++.+..++..+.. ..+.|+|++|+||||+|+.+.+.......+. ....+..+...... .+.+.+..
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 112 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKVKN 112 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHHHH
Confidence 35689999999999999876532 2388999999999999999988421110111 12223332222221 22222211
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-hhhhcCC
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-VAMITDE 315 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v~~~~~~ 315 (718)
....... ..... .....-..++-+|++|+++.. ...+.+...+.......++|++|.... +......
T Consensus 113 ~~~~~~~-----~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 113 FARLTVS-----KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HHHSCCC-----CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred Hhhhccc-----ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 1110000 00000 000111235569999998753 344555555543444567777775443 2111111
Q ss_pred CCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhc
Q 047642 316 KNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCR 366 (718)
Q Consensus 316 ~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~ 366 (718)
....+.+.+++.++..+.+...+...... .+ .+....|++.++
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~-----i~---~~~l~~l~~~~~ 225 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVK-----CD---DGVLERILDISA 225 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCC-----CC---HHHHHHHHHHTS
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCC-----CC---HHHHHHHHHHcC
Confidence 11468899999999988888765332211 12 234556666664
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=4.9e-05 Score=83.78 Aligned_cols=163 Identities=16% Similarity=0.155 Sum_probs=91.0
Q ss_pred CCceeeccccHHHHHHHHhcC---------------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 160 NEQVVGFEENTKMLIKQLLKD---------------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
-.+++|++..++++.+++... .+..+.+.|+|++|+||||+|+.+++. . .+. .+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l--~~~-~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--L--GYD-ILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--T--TCE-EEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--c--CCC-EEEEeCCC
Confidence 356999999999999998651 013468999999999999999999984 2 121 23344333
Q ss_pred CCCHHHHHHHHHHHhcCCcccchHH-hhhcCHHHHHHHHHHHhcCceEEEEEecCCChh-----hhhHHHhhCCCCCCCc
Q 047642 225 EYTTRDLLQKTIKSFQKPKIEDLEL-MERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS-----AWESLRRAFPDNGNGS 298 (718)
Q Consensus 225 ~~~~~~~l~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~-----~~~~l~~~l~~~~~gs 298 (718)
.... ..+...+......... .. +... .. .....+++.+||+|+++... .+..+...+.. .+.
T Consensus 113 ~~~~-~~~~~~i~~~~~~~~~--~~~~~~~--~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNMSV--VGYFKHN--EE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TST 180 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBCCS--TTTTTC-----------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSS
T ss_pred cchH-HHHHHHHHHHhccccH--HHHHhhh--hh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCC
Confidence 3332 2233222222110000 00 0000 00 00123577899999997531 23344433322 234
Q ss_pred EEEEEecchhh--hhhcCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 299 RIVITTRNEPV--AMITDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 299 riivTTR~~~v--~~~~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.||+++..... ..........+.+++++.++..+.+...+.
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 46666554321 111222235789999999999988877654
No 190
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=1.1e-05 Score=75.80 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=74.6
Q ss_pred cccCcEeeeecC-CccchhhhhhhhhccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCccc-----c
Q 047642 530 YPRLRSLLFFNP-DRESINIKHLQTLCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE-----F 603 (718)
Q Consensus 530 ~~~l~~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~-----l 603 (718)
.+.|+.|.+.++ .........+...+...++|++|+|++|.+.+. ....+...+...+.|++|+|++|.|.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-VAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-HHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-HHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 567888888877 655433444556667778888888888887630 011134455666788888888888873 5
Q ss_pred cccccccCCCcEEEe--cCccccc-----cChhhccccccceeee
Q 047642 604 PRSIGNLQCLKTMVA--SGNSCWK-----LPSQISKLHQLRHLIA 641 (718)
Q Consensus 604 p~~i~~l~~L~~L~l--~~~~i~~-----lp~~i~~L~~L~~L~l 641 (718)
...+...++|++|+| ++|.+.. +...+...++|++|++
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 666777778888888 7777663 4444555566777765
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.82 E-value=0.00048 Score=72.98 Aligned_cols=185 Identities=10% Similarity=0.044 Sum_probs=95.7
Q ss_pred CCCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 159 GNEQVVGFEENTKMLIKQLLKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.-.+++|.+..++.+.+++... ....+-|.|+|.+|+|||+||+.+++. .... ++.++...-.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~-----~~~v~~~~l~ 185 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT-----FFNISAASLT 185 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE-----EEEECSCCC-
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc-----EEEeeHHHhh
Confidence 3457999999999998887321 112457899999999999999999883 2222 2222221111
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCC---
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFP--- 292 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--- 292 (718)
... .+ .....+...+...-...+.+|+||+++.. .....+...+.
T Consensus 186 ~~~-------~g------------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 186 SKY-------VG------------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp -------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred ccc-------cc------------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 000 00 01111112222222345679999999643 11122222221
Q ss_pred -CCCCCcEEEEEecchhhh-hhc-CCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCC
Q 047642 293 -DNGNGSRIVITTRNEPVA-MIT-DEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEI 369 (718)
Q Consensus 293 -~~~~gsriivTTR~~~v~-~~~-~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~ 369 (718)
.......||.||...... ... .-....+.+...+.++-.+++...+-..... .. .+....|++.+.+..
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-----l~---~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-----LT---QKELAQLARMTDGYS 318 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-----SC---HHHHHHHHHHTTTCC
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-----CC---HHHHHHHHHHcCCCC
Confidence 112334556566543221 111 1111467888899999999988776443221 11 234456666665444
Q ss_pred hhHHHHHH
Q 047642 370 PHEWHTVK 377 (718)
Q Consensus 370 ~~~w~~~~ 377 (718)
......++
T Consensus 319 ~~~l~~L~ 326 (389)
T 3vfd_A 319 GSDLTALA 326 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43444443
No 192
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=1.1e-05 Score=72.29 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.0
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35789999999888887542112234779999999999999999884
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.81 E-value=1e-05 Score=75.96 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=38.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++||+.+++.+.+.+.... ...+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 456789999999999999999884
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.77 E-value=2e-05 Score=75.33 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=37.5
Q ss_pred ceeeccc----cHHHHHHHHhcCCCC--cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe
Q 047642 162 QVVGFEE----NTKMLIKQLLKDEQQ--RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV 222 (718)
Q Consensus 162 ~~vGr~~----~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 222 (718)
.|++... .++.+.+++...... ...+.|+|++|+||||||+.+++. ...+....+|++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 4555443 334455555543221 268899999999999999999984 3333344566654
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.76 E-value=0.00046 Score=74.35 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=87.4
Q ss_pred CCCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 159 GNEQVVGFEENTKMLIKQLLKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
.-.+++|.++.++.|.+.+... ....+-|.|+|++|+|||+||+.+++. .. ..-++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEEEeHHH--
Confidence 3456899999999888876310 123467899999999999999999984 21 12334443321
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCCC--
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPD-- 293 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~-- 293 (718)
+.... .+.. ......+. ...-..++.+|+||+++.. .....+...+..
T Consensus 204 --l~~~~---~g~~---------~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 --LVSKW---LGES---------EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------C---------CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred --HHhhh---cchH---------HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 11110 0100 01111221 2222356789999999854 112334333332
Q ss_pred -CCCCcEEEEEecchhhhh--hcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 294 -NGNGSRIVITTRNEPVAM--ITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 294 -~~~gsriivTTR~~~v~~--~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
...+..||.||....... ...-....+.+...+.++-.++|..++..
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 234566676776543211 01111246778888888888888877643
No 196
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.75 E-value=0.00022 Score=73.85 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=84.1
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC--------------------CCceEEEEEecCCCC
Q 047642 168 ENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG--------------------GFDCRAWVCVTQEYT 227 (718)
Q Consensus 168 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~ 227 (718)
+..+.+...+..+. -...+.++|+.|+||||+|+.+.+...-.. |++ ..++.....
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~-- 84 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT--
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc--
Confidence 34455666555442 345789999999999999999887421111 122 122211100
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHh-----cCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEE
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFL-----EGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRI 300 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsri 300 (718)
. .....+++. .+.+.+ .+++-++|+|+++.. +..+.+...+..-..++.+
T Consensus 85 ----------------~------~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 85 ----------------K------NTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp ----------------C------SSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ----------------C------CCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 0 011222222 122222 246778999999854 4556677777655556777
Q ss_pred EEEecchh-hhhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 301 VITTRNEP-VAMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 301 ivTTR~~~-v~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
|++|.+.+ +..........+++.+++.++..+.+....
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 77776553 332222233679999999999998888765
No 197
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=1.9e-05 Score=73.87 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=54.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
...++|+|++|+||||||+.+++.......+. +++++ ..++...+......... ... .
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~-----------~~~----~ 95 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD-----------TKF----L 95 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC-----------SHH----H
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH-----------HHH----H
Confidence 46899999999999999999998422122222 23333 33444444333221111 011 1
Q ss_pred HHhcCceEEEEEecCCC--hhhhh--HHHhhCCC-CCCCcEEEEEecc
Q 047642 264 EFLEGRRYLVVVDDIWH--KSAWE--SLRRAFPD-NGNGSRIVITTRN 306 (718)
Q Consensus 264 ~~L~~k~~LlVLDdv~~--~~~~~--~l~~~l~~-~~~gsriivTTR~ 306 (718)
+.+. +.-+|||||++. .+.|. .+...+.. ...|..+|+||..
T Consensus 96 ~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 96 KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1222 456899999983 33333 22222221 1246788888863
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.74 E-value=0.00048 Score=69.94 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=95.0
Q ss_pred CCceeeccccHHHHHHHHhcC----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.+..++.+.+.+... ....+.+.|+|++|+||||+|+.+++. .... .+.++.+.-..
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~-- 92 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS-- 92 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS--
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh--
Confidence 456899999999998877431 112467899999999999999999984 2222 12233222110
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHH-HHHHHhcCceEEEEEecCCChh-------------hhhHHH---hhCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLEL-HLYEFLEGRRYLVVVDDIWHKS-------------AWESLR---RAFP 292 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~---~~l~ 292 (718)
.... ....... .+......++.+|+||+++... ....+. ..++
T Consensus 93 ------------~~~~--------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 93 ------------KYVG--------DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp ------------SSCS--------CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred ------------cccc--------hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 0000 0111111 1222224567899999996431 111222 2223
Q ss_pred CC--CCCcEEEEEecchh-----hhhhcCCCCceeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHh
Q 047642 293 DN--GNGSRIVITTRNEP-----VAMITDEKNFVYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKC 365 (718)
Q Consensus 293 ~~--~~gsriivTTR~~~-----v~~~~~~~~~~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c 365 (718)
.. +.+..||.||.... +...+ ...+.+...+.++..+++...+-..... .+ .+....+++.+
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~R~---~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~---~~~~~~la~~~ 221 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALRRF---TKRVYVSLPDEQTRELLLNRLLQKQGSP-----LD---TEALRRLAKIT 221 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHHHC---CEEEECCCCCHHHHHHHHHHHHGGGSCC-----SC---HHHHHHHHHHT
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHhhC---CeEEEeCCcCHHHHHHHHHHHHHhcCCC-----CC---HHHHHHHHHHc
Confidence 22 23455666776543 22222 1456777778888888877665322110 11 22345566666
Q ss_pred ccCChhHHHHHHH
Q 047642 366 REEIPHEWHTVKN 378 (718)
Q Consensus 366 ~~~~~~~w~~~~~ 378 (718)
.+........+++
T Consensus 222 ~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 222 DGYSGSDLTALAK 234 (297)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5444444444443
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00019 Score=73.01 Aligned_cols=145 Identities=15% Similarity=0.054 Sum_probs=87.7
Q ss_pred ccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc-ccc-CCCceEEEEEecC-CCCHHHHHHHHHHHhcCC
Q 047642 166 FEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNST-DVK-GGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQKP 242 (718)
Q Consensus 166 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~~ 242 (718)
-++.++.+...+..+. .....++|++|+||||+|+.+.+.. ... .+.+ ..++..+. ...+. ..+++++.+...
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id-~ir~li~~~~~~ 77 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGID-DIRTIKDFLNYS 77 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHH-HHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHH-HHHHHHHHHhhc
Confidence 3445566666666554 6789999999999999999998731 111 1223 34443332 22222 223333333211
Q ss_pred cccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecch-hhhhhcCCCCce
Q 047642 243 KIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNE-PVAMITDEKNFV 319 (718)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~-~v~~~~~~~~~~ 319 (718)
. ..+++-++|+|+++.. +..+.+...+..-...+.+|++|.+. .+....... .
T Consensus 78 p----------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~ 133 (305)
T 2gno_A 78 P----------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--V 133 (305)
T ss_dssp C----------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--S
T ss_pred c----------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--e
Confidence 1 1245678999999853 45666776666555677777776544 333333333 7
Q ss_pred eeccCCCHHhHHHHHHhhh
Q 047642 320 YKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 320 ~~l~~L~~~es~~Lf~~~a 338 (718)
+++.+++.++..+.+...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 8999999999988887765
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00013 Score=76.11 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=89.8
Q ss_pred CCCCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLK-----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
..-.++.|.++.+++|.+.+.- +-..++-|.++|++|+|||.||+++++. ....| +.|..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhh
Confidence 3345688999988888776532 1123567899999999999999999994 33332 223322111
Q ss_pred CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh----------h------hhhHHHhh
Q 047642 227 TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK----------S------AWESLRRA 290 (718)
Q Consensus 227 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~----------~------~~~~l~~~ 290 (718)
+ ... ..+...+...+...-...+++|++|+++.. . ....+...
T Consensus 220 s--------------k~v-------Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 278 (405)
T 4b4t_J 220 Q--------------KYI-------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278 (405)
T ss_dssp C--------------SST-------THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHH
T ss_pred c--------------ccc-------chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1 000 001111222222222456899999999843 0 12233333
Q ss_pred CCC--CCCCcEEEEEecchhhhh----hcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 291 FPD--NGNGSRIVITTRNEPVAM----ITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 291 l~~--~~~gsriivTTR~~~v~~----~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
+.. ...+-.||.||...+... .-+-....+.++.-+.++-.++|..+.-.
T Consensus 279 lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp HHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 332 233445677777664321 11122367888888888888999877643
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00022 Score=75.62 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=89.2
Q ss_pred CCCCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLK-----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
..-.++.|.++.+++|.+.+.- +-..++-|.++|++|+|||+||+++++. ....| +.+..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhc
Confidence 3445788999988888776642 1124578999999999999999999994 33332 223322211
Q ss_pred CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-----------h-----hhhHHHhh
Q 047642 227 TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-----------S-----AWESLRRA 290 (718)
Q Consensus 227 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-----------~-----~~~~l~~~ 290 (718)
+ .... .+...+...+...-...+++|++|+++.. + .+..+...
T Consensus 253 s--------------k~~G-------ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 253 D--------------KYIG-------ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp C--------------SSSS-------HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred c--------------ccch-------HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 1 0000 00111112222222457899999999742 0 12233333
Q ss_pred CCC--CCCCcEEEEEecchhhhhhc--CC--CCceeeccCCCHHhHHHHHHhhhC
Q 047642 291 FPD--NGNGSRIVITTRNEPVAMIT--DE--KNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 291 l~~--~~~gsriivTTR~~~v~~~~--~~--~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
+.. ...+..||.||...+...-. .. ....++++.-+.++-.++|..+.-
T Consensus 312 lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp HHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred hhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 331 23355677788766543211 11 225678887888888888876653
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=0.00022 Score=77.53 Aligned_cols=154 Identities=11% Similarity=0.082 Sum_probs=89.6
Q ss_pred CceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
..++|.+..++++.+++... .....-|.|+|++|+|||++|+.+.+. ....| +.++.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~------- 271 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLING------- 271 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEH-------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEc-------
Confidence 46899999999998877532 223456899999999999999999883 32222 22221
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh-------------hhhhHHHhhCCC--C
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK-------------SAWESLRRAFPD--N 294 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~--~ 294 (718)
.++...+.+ .....+...+.....+++.+|+||+++.. .....+...+.. .
T Consensus 272 ---~~l~~~~~g-----------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 272 ---PEIMSKLAG-----------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp ---HHHHTSCTT-----------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT
T ss_pred ---hHhhhhhcc-----------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc
Confidence 111111110 01122233344444567789999999421 112333333331 2
Q ss_pred CCCcEEEEEecchhh-hhhc---CCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 295 GNGSRIVITTRNEPV-AMIT---DEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 295 ~~gsriivTTR~~~v-~~~~---~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
..+.+||.||..... .... +-....+.+...+.++-.+++..++-.
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 234566667665532 1111 112246889999999999999887643
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.65 E-value=0.00016 Score=71.77 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=35.3
Q ss_pred CCCceeeccccHHHHHHHH---hcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 159 GNEQVVGFEENTKMLIKQL---LKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 159 ~~~~~vGr~~~~~~l~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.-.+++|.+..++++.+.+ ... ....+-+.|+|++|+||||||+.+++.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456899988877766543 221 012345889999999999999999984
No 204
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.65 E-value=0.0003 Score=73.00 Aligned_cols=146 Identities=21% Similarity=0.166 Sum_probs=85.6
Q ss_pred CCceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHH
Q 047642 160 NEQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
-.+++|++..++++..++... ......|.|+|++|+|||+||+.+.+. ....| +.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 456999999999998888653 233456899999999999999999883 33332 2222211110
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh--hhhhHHHhhCCCCC------------------C
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK--SAWESLRRAFPDNG------------------N 296 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~------------------~ 296 (718)
.......+.. ..+..+|+||+++.. ...+.+...+.... +
T Consensus 94 ------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 94 ------------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ------------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ------------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 0111111111 235678889998754 23334433332211 1
Q ss_pred CcEEEEEecchhhh-hhc-CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 297 GSRIVITTRNEPVA-MIT-DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 297 gsriivTTR~~~v~-~~~-~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
+..+|.||...... ... .-....+.+.+++.++..+++...+-
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 24566666543321 111 11125789999999999998887663
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.58 E-value=0.00013 Score=75.74 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=84.2
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccC-CCce-EEEEEecCCCCHHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKG-GFDC-RAWVCVTQEYTTRDLLQKTIKS 238 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~~l~~i~~~ 238 (718)
..++|.+..++.+...+..+. ...+.++|++|+||||+|+.+.+. +.. .+.. ..-++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~---------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGI---------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSH----------
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccH----------
Confidence 457888888888887776653 223899999999999999999884 211 1111 111221111111
Q ss_pred hcCCcccchHHhhhcCHHHHHHHHHHH------hcCceEEEEEecCCCh--hhhhHHHhhCCCCCCCcEEEEEecchh-h
Q 047642 239 FQKPKIEDLELMERMTEEDLELHLYEF------LEGRRYLVVVDDIWHK--SAWESLRRAFPDNGNGSRIVITTRNEP-V 309 (718)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~l~~~l~~~------L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gsriivTTR~~~-v 309 (718)
+.+...+... +.+.+-++|+|+++.. +..+.+...+.......++|++|.... +
T Consensus 91 -----------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 91 -----------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 153 (340)
T ss_dssp -----------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred -----------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCcccc
Confidence 1111111111 1234678999998643 344555544443345667777765442 2
Q ss_pred hhhcCCCCceeeccCCCHHhHHHHHHhhh
Q 047642 310 AMITDEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..........+++.+++.++..+.+...+
T Consensus 154 ~~~i~sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 154 TPALLSQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred chhHHhhceeEeccCCCHHHHHHHHHHHH
Confidence 11111122468899999998888777655
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00023 Score=75.31 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=87.6
Q ss_pred CCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLK-----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.++.|.++.+++|.+.+.- +-..++-|.++|++|+|||+||+++++. ....| +.+..+.-
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L--- 279 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSEL--- 279 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG---
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHh---
Confidence 34688999988888776431 1134678899999999999999999994 33332 22322211
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChh----------------hhhHHHhhCC
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKS----------------AWESLRRAFP 292 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~ 292 (718)
...... .+...+...+...-...+++|++|+++... ....+...+.
T Consensus 280 -----------~sk~vG-------esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 280 -----------VQKYVG-------EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp -----------CCCSSS-------HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred -----------hcccCC-------HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 111000 011112222222334578999999997430 1122222222
Q ss_pred C--CCCCcEEEEEecchhhhh----hcCCCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 293 D--NGNGSRIVITTRNEPVAM----ITDEKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 293 ~--~~~gsriivTTR~~~v~~----~~~~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
. ...+-.||.||...+... ..+-....+++...+.++-.++|..+.-.
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 2 223445566776554321 11122367888888888888999877643
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.57 E-value=0.00029 Score=70.30 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=34.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35889999999888777543222346789999999999999999984
No 208
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00011 Score=79.68 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=78.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCC-----ceEEEEEecCCCCHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGF-----DCRAWVCVTQEYTTRDLLQKT 235 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~~~~wv~vs~~~~~~~~l~~i 235 (718)
..+|||+.+++.++..|.... ..-+.|+|.+|+|||++|+.+++. +...+ ...-++.+.-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC-------------
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC----------
Confidence 459999999999999997643 234579999999999999999884 21111 11111111111
Q ss_pred HHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhh---
Q 047642 236 IKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMI--- 312 (718)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~--- 312 (718)
....+. +. ..+...+...-..++.+|++| ...+..+.+...+. ...-++|.+|........
T Consensus 246 -~~~~g~-------~e----~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 -TKYRGE-------FE----DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp ---------------C----TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -ccccch-------HH----HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000000 00 011112222223567888899 22233333433333 123456665554431111
Q ss_pred ---cCCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 313 ---TDEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 313 ---~~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
.......+.+++.+.++..+++...+-
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 101114688999999999999986553
No 209
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.0007 Score=72.93 Aligned_cols=154 Identities=15% Similarity=0.085 Sum_probs=85.9
Q ss_pred CCceeeccccHHHHHHHHh---cC-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 160 NEQVVGFEENTKMLIKQLL---KD-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
-.+++|.++.++++.+.+. .. -.-.+-|.|+|++|+||||||+.+++. ....| +.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH-
Confidence 3468999988777766543 21 012335889999999999999999984 33222 22332221110
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh----------------hhhhHHHhhCCC
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK----------------SAWESLRRAFPD 293 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~ 293 (718)
..+ .........+.......+.+|+||+++.. .....+...+..
T Consensus 89 ---------~~g-----------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 89 ---------FVG-----------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG 148 (476)
T ss_dssp ---------CTT-----------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH
T ss_pred ---------Hhc-----------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc
Confidence 000 00112223344444567889999999642 123333333321
Q ss_pred --CCCCcEEEEEecchhhhh--hcC--CCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 --NGNGSRIVITTRNEPVAM--ITD--EKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 --~~~gsriivTTR~~~v~~--~~~--~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+..||.||...+... ... -....+.++..+.++-.+++..++-
T Consensus 149 ~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~ 200 (476)
T 2ce7_A 149 FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTR 200 (476)
T ss_dssp SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHH
Confidence 123556777777665432 111 1224678888888887788876654
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=3.3e-05 Score=72.62 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=50.9
Q ss_pred hhhhhccCCceEEEEEecCC-cccccccccccchhhhhcccccEEeeccCCccc-----ccccccccCCCcEEEecCccc
Q 047642 550 HLQTLCSSLRFLRVLDLEDT-RIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVE-----FPRSIGNLQCLKTMVASGNSC 623 (718)
Q Consensus 550 ~~~~~~~~l~~L~~L~l~~~-~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~i 623 (718)
.+...+...+.|+.|+|++| .+... ....+...+...++|++|+|++|.|.. +...+...++|++|+|++|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34556777888999999988 77520 111144555666788888888888762 455555667788888888876
Q ss_pred cc
Q 047642 624 WK 625 (718)
Q Consensus 624 ~~ 625 (718)
..
T Consensus 106 ~~ 107 (185)
T 1io0_A 106 SG 107 (185)
T ss_dssp CH
T ss_pred CH
Confidence 63
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.49 E-value=0.00017 Score=84.65 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=38.4
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|||+++++++++.|.... ..-+.++|.+|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997653 234689999999999999999884
No 212
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00038 Score=72.90 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCCCceeeccccHHHHHHHHhc----C-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLK----D-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
..-.++.|.++.+++|.+.+.- . -..++-|.++|++|+|||.||+++++. ....| +.++.+.-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSEL- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGG-
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHh-
Confidence 3445688999988888776532 1 123578999999999999999999994 33332 22222211
Q ss_pred CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH-HHHhcCceEEEEEecCCCh----------------hhhhHHHh
Q 047642 227 TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL-YEFLEGRRYLVVVDDIWHK----------------SAWESLRR 289 (718)
Q Consensus 227 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~ 289 (718)
...... +.+...+.+ ...-...+++|++|+++.. .....+..
T Consensus 253 -------------~sk~vG--------esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 253 -------------IQKYLG--------DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp -------------CCSSSS--------HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred -------------hhccCc--------hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 110000 011122222 2222456899999998742 01223333
Q ss_pred hCC--CCCCCcEEEEEecchhhhhhc--C--CCCceeeccCCCHHhHHHHHHhhhCC
Q 047642 290 AFP--DNGNGSRIVITTRNEPVAMIT--D--EKNFVYKLRFLNQEESWKLFCKKAFP 340 (718)
Q Consensus 290 ~l~--~~~~gsriivTTR~~~v~~~~--~--~~~~~~~l~~L~~~es~~Lf~~~af~ 340 (718)
.+. ....+-.||.||...+...-. . -....+.+..-+.++-.++|..+.-.
T Consensus 312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 222 123345667777766543211 1 11245778878888888888877643
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0002 Score=75.80 Aligned_cols=154 Identities=13% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCCCceeeccccHHHHHHHHhc----C-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLK----D-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
..-.++.|.++.+++|.+.+.. + -..++-|.++|++|+|||.||+++++. ....| +.++.+.-
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l- 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQL- 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG-
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhh-
Confidence 3445789999999988776432 1 134678899999999999999999994 33332 22322211
Q ss_pred CHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH-HhcCceEEEEEecCCCh-------h---------hhhHHHh
Q 047642 227 TTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE-FLEGRRYLVVVDDIWHK-------S---------AWESLRR 289 (718)
Q Consensus 227 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVLDdv~~~-------~---------~~~~l~~ 289 (718)
...... . .+...+.+.. .-...+++|++|+++.. . ....+..
T Consensus 252 -------------~~~~vG-------e-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 252 -------------VQMYIG-------E-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp -------------CSSCSS-------H-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred -------------hhcccc-------h-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 110000 0 0111222222 22346789999998632 0 1223444
Q ss_pred hCCCC--CCCcEEEEEecchhhhhhc--C--CCCceeeccCCCHHhHHHHHHhhh
Q 047642 290 AFPDN--GNGSRIVITTRNEPVAMIT--D--EKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 290 ~l~~~--~~gsriivTTR~~~v~~~~--~--~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.+... ..+-.||.||...+..... . -....++++.-+.++-.++|..+.
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 44422 2344566677766543211 1 112567888888888888887654
No 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=3.3e-05 Score=76.61 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=44.9
Q ss_pred hhcccccEEeeccCCccccc---ccccccCCCcEEEecCccccccChhhcccc--ccceeee
Q 047642 585 GKLIHLRYFGFKCNSLVEFP---RSIGNLQCLKTMVASGNSCWKLPSQISKLH--QLRHLIA 641 (718)
Q Consensus 585 ~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l 641 (718)
.++++|+.|+|++|+|+.++ ..+..+++|++|+|++|.++.+. .+..+. +|+.|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L 227 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWL 227 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEEC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEc
Confidence 57889999999999998655 55678999999999999998773 355554 7777776
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.41 E-value=0.00022 Score=72.97 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=36.5
Q ss_pred ceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.+..++.+...+... ......+.|+|++|+||||+|+.+++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 4778888888888777543 112358999999999999999999983
No 216
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00035 Score=73.97 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=39.1
Q ss_pred CCCCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLK-----------DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..-.++.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445788999999888776632 1134567899999999999999999994
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.38 E-value=6.2e-05 Score=75.40 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCceeeccccHHHHHHHHhc----------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLK----------DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|.++.++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35689999998888776541 1111234779999999999999999984
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.36 E-value=0.00016 Score=73.75 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=37.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|....++++.+.+..-......|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35889999999998888653323446789999999999999999984
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.00011 Score=66.08 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-..++|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999984
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.0014 Score=76.00 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=84.6
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcc---ccC-CCceEEEEEecCCCCHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTD---VKG-GFDCRAWVCVTQEYTTRDLLQKTI 236 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~~-~F~~~~wv~vs~~~~~~~~l~~i~ 236 (718)
..++||+++++++++.|.... ..-+.|+|.+|+||||+|+.+.+... +.. .+.+.+|. +.-. .+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~~----~l----- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDIG----SL----- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCCC-----------
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcHH----HH-----
Confidence 458999999999999987653 34568999999999999999987421 000 11223331 1100 00
Q ss_pred HHhcCCcccchHHhhhcCHHHHHHHHHHHh-cCceEEEEEecCCCh--------hh---hhHHHhhCCCCCCCcEEEEEe
Q 047642 237 KSFQKPKIEDLELMERMTEEDLELHLYEFL-EGRRYLVVVDDIWHK--------SA---WESLRRAFPDNGNGSRIVITT 304 (718)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVLDdv~~~--------~~---~~~l~~~l~~~~~gsriivTT 304 (718)
+.+... .-..+.....+.+.+ ..++.+|++||++.. .. ...+...+. ..+.++|.+|
T Consensus 254 --~~~~~~-------~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 254 --LAGTKY-------RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ---CCCCC-------SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred --hccccc-------cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 000000 001122222233333 346789999999754 12 122222222 2345666666
Q ss_pred cchhhhhhcC------CCCceeeccCCCHHhHHHHHHhhh
Q 047642 305 RNEPVAMITD------EKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 305 R~~~v~~~~~------~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
.......... .....+.+...+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5443221111 111358889999999888877543
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.31 E-value=0.00041 Score=70.82 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=37.1
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD------------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.++.++.+...+... ......+.|+|++|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999988877541 112456789999999999999999984
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.25 E-value=0.00075 Score=78.13 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc---cccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNST---DVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
..+|||+++++++...|.... ..-+.++|++|+|||++|+.+.+.. .+-......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 469999999999999997653 2346899999999999999998841 0000111111211111
Q ss_pred HhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhhcC---
Q 047642 238 SFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMITD--- 314 (718)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~~--- 314 (718)
+..... .++ ..+...+......++.+|++| ...+..+.+...+. ...-++|.||..........
T Consensus 245 --g~~~~G---~~e----~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --GTKYRG---EFE----DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -------------C----TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --cccccc---hHH----HHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000000 000 112222233334677899999 22222233333333 22356666665544211110
Q ss_pred ---CCCceeeccCCCHHhHHHHHHhhh
Q 047642 315 ---EKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 315 ---~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
..-..+.++..+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111468999999999999998654
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.22 E-value=0.001 Score=75.94 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=87.3
Q ss_pred CCceeeccccHHHHHHHHhc----C-------CCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLK----D-------EQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.++.|.++.+++|.+.+.- + -..++-|.++|++|+|||+||+++++. ...+| +.|+.+
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH-----
Confidence 34688999999888876532 1 123578999999999999999999994 33332 223211
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh---------h----hhhHHHhhCCC--
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK---------S----AWESLRRAFPD-- 293 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~---------~----~~~~l~~~l~~-- 293 (718)
+++.. .. ......+...+.......+.+|++|+++.. + ...++...+..
T Consensus 273 -----~l~sk----~~-------gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~ 336 (806)
T 3cf2_A 273 -----EIMSK----LA-------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp -----HHHSS----CT-------THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC
T ss_pred -----Hhhcc----cc-------hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc
Confidence 11110 00 001222333344444567899999999742 0 12223222221
Q ss_pred CCCCcEEEEEecchhhhh-hc---CCCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 NGNGSRIVITTRNEPVAM-IT---DEKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 ~~~gsriivTTR~~~v~~-~~---~~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+--||.||...+... .+ +-....+++...+.++-.++|..+.-
T Consensus 337 ~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 112334555665543321 11 11235688888888888888887654
No 224
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.21 E-value=0.00045 Score=63.45 Aligned_cols=33 Identities=6% Similarity=0.027 Sum_probs=16.5
Q ss_pred cccEEeeccCCccc-ccccccccCCCcEEEecCc
Q 047642 589 HLRYFGFKCNSLVE-FPRSIGNLQCLKTMVASGN 621 (718)
Q Consensus 589 ~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~ 621 (718)
+|+.||++++.|+. --..+.++++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 45556665555541 1123445555555555555
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.09 E-value=0.00042 Score=80.24 Aligned_cols=47 Identities=32% Similarity=0.432 Sum_probs=37.5
Q ss_pred CceeeccccHHHHHHHHhcCC-------CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDE-------QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999988888876421 12347999999999999999999984
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.03 E-value=0.0011 Score=63.85 Aligned_cols=91 Identities=21% Similarity=0.109 Sum_probs=52.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH-----hhh-cCHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL-----MER-MTEED 257 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~-----~~~-~~~~~ 257 (718)
-.++.|+|.+|+||||||..+.. . .-..++|++....++...+. .+....+......... ... .+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999987 1 12357788877656665443 3333332211000000 000 11123
Q ss_pred HHHHHHHHhcCceEEEEEecCCC
Q 047642 258 LELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 258 l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
....++..+..+.-+||+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 44445555544577999999764
No 227
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.00 E-value=0.00085 Score=69.30 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=35.7
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++|+++.++.+...+..+. -+.++|.+|+|||+||+.+.+
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 58899999988888877643 578999999999999999988
No 228
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.90 E-value=0.00076 Score=61.89 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=43.4
Q ss_pred ccCcEeeeecCCccchhhhhhhhhccCCceEEEEEecCCc-ccccccccccchhhhhc----ccccEEeeccC-Cccc-c
Q 047642 531 PRLRSLLFFNPDRESINIKHLQTLCSSLRFLRVLDLEDTR-IEHSGKVLRLTDSIGKL----IHLRYFGFKCN-SLVE-F 603 (718)
Q Consensus 531 ~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~l~~~p~~i~~l----~~L~~L~l~~~-~l~~-l 603 (718)
.+|+.|.++++......+ ..+..+++|+.|+|++|. +++ . --..++.+ ++|++|+|++| +|+. -
T Consensus 61 ~~L~~LDLs~~~Itd~GL----~~L~~~~~L~~L~L~~C~~ItD--~---gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF----DHMEGLQYVEKIRLCKCHYIED--G---CLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGG----GGGTTCSCCCEEEEESCTTCCH--H---HHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHH----HHhcCCCCCCEEEeCCCCccCH--H---HHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 346667776665432111 223566777777777764 542 2 22334432 35677777653 3551 1
Q ss_pred cccccccCCCcEEEecCc
Q 047642 604 PRSIGNLQCLKTMVASGN 621 (718)
Q Consensus 604 p~~i~~l~~L~~L~l~~~ 621 (718)
-..+.++++|++|++++|
T Consensus 132 l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHHGGGCTTCCEEEEESC
T ss_pred HHHHhcCCCCCEEECCCC
Confidence 123455666777777666
No 229
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.85 E-value=0.0003 Score=71.76 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=28.2
Q ss_pred cHHHHHHHHhcCCC-CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 169 NTKMLIKQLLKDEQ-QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 169 ~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++.+.+++..... ....+.|+|++|+|||+||+.+++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34445555554322 2467889999999999999999984
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.83 E-value=0.0018 Score=65.46 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568889999999999999999984
No 231
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.83 E-value=0.0051 Score=71.23 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=84.8
Q ss_pred CCceeeccccHHHHHHHHhc-----------CCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH
Q 047642 160 NEQVVGFEENTKMLIKQLLK-----------DEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT 228 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 228 (718)
-.+++|.+..+++|.+++.. .-.....|.|+|++|+||||||+.+.+. ....| +.++.+
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch-----
Confidence 35689999999999888753 1123457899999999999999999983 33222 222211
Q ss_pred HHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh---------h----hhhHHHhhCCC--
Q 047642 229 RDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK---------S----AWESLRRAFPD-- 293 (718)
Q Consensus 229 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~---------~----~~~~l~~~l~~-- 293 (718)
.+...... .....+...++........++++|+++.. + ....+...+..
T Consensus 273 ---------~l~~~~~g-------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 273 ---------EIMSKLAG-------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp ---------HHSSSSTT-------HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred ---------Hhhhhhhh-------hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Confidence 11111000 00112222333333456789999999521 0 11222222221
Q ss_pred CCCCcEEEEEecchhhh-hhcC---CCCceeeccCCCHHhHHHHHHhhhC
Q 047642 294 NGNGSRIVITTRNEPVA-MITD---EKNFVYKLRFLNQEESWKLFCKKAF 339 (718)
Q Consensus 294 ~~~gsriivTTR~~~v~-~~~~---~~~~~~~l~~L~~~es~~Lf~~~af 339 (718)
...+-.+|.||...... .... -....+.+...+.++-.+++...+-
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 12344556666554321 1111 1124567888888888888876653
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.77 E-value=0.013 Score=58.32 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=79.4
Q ss_pred CceeeccccHHHHHHHHhcC----------C-CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 161 EQVVGFEENTKMLIKQLLKD----------E-QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~----------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
.++.|.++.+++|.+.+... + .-.+-++|+|++|+||||||+.++.. ... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhh-
Confidence 45788888888777654211 0 11122999999999999999999983 221 2334432211100
Q ss_pred HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHH-hcCceEEEEEecCCCh-------------hhhhHHHhhCCCC-
Q 047642 230 DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEF-LEGRRYLVVVDDIWHK-------------SAWESLRRAFPDN- 294 (718)
Q Consensus 230 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~- 294 (718)
.. . ........+.+. -...+.++++|+++.. .....+...+..+
T Consensus 84 -------------~~------~--~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 84 -------------YV------G--ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp -------------TT------H--HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC
T ss_pred -------------hh------h--HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc
Confidence 00 0 000111112221 1345689999999742 1122233333321
Q ss_pred -CCCcEEEEEecchhhhhhc----CCCCceeeccCCCHHhHHHHHHhhh
Q 047642 295 -GNGSRIVITTRNEPVAMIT----DEKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 295 -~~gsriivTTR~~~v~~~~----~~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
....-++.+|...++..-. +-....+.+...+.++-.++|....
T Consensus 143 ~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 143 ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1234456677766553211 1123567788888888888887655
No 233
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.75 E-value=0.0076 Score=65.25 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=82.2
Q ss_pred CCCCceeeccccHHHHHHHHh---cCC-------CCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC
Q 047642 158 AGNEQVVGFEENTKMLIKQLL---KDE-------QQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT 227 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 227 (718)
..-.+++|.++.++++.+... ... .-.+-|.|+|++|+||||||+.+++. .... .+.++.+.-..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~~---~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARVP---FITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCC---EEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEehhHHHH
Confidence 334568999887777665442 210 11234899999999999999999984 3222 23333221100
Q ss_pred HHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcC----ceEEEEEecCCCh------------h----hhhHH
Q 047642 228 TRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEG----RRYLVVVDDIWHK------------S----AWESL 287 (718)
Q Consensus 228 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~----k~~LlVLDdv~~~------------~----~~~~l 287 (718)
.. .......++..++. ...++++|+++.. + ....+
T Consensus 103 --------------~~-----------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~L 157 (499)
T 2dhr_A 103 --------------MF-----------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL 157 (499)
T ss_dssp --------------SC-----------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHH
T ss_pred --------------hh-----------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHH
Confidence 00 00111223333322 3479999999532 1 12344
Q ss_pred HhhCCCC--CCCcEEEEEecchhhhhh--cC--CCCceeeccCCCHHhHHHHHHhhh
Q 047642 288 RRAFPDN--GNGSRIVITTRNEPVAMI--TD--EKNFVYKLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 288 ~~~l~~~--~~gsriivTTR~~~v~~~--~~--~~~~~~~l~~L~~~es~~Lf~~~a 338 (718)
...+..+ ..+..|+.||...++..- .. -....+.++..+.++-.+++..++
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 4334322 233456666766654221 11 112467888888888888887665
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.71 E-value=0.00084 Score=67.59 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=44.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEe--cCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCV--TQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELH 261 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 261 (718)
.+++.|+|++|+||||||.++... ....++|+++ .+..+.. ..+.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~----------------------~~~le~~l~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGY----------------------NTDFNVFVDD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTC----------------------BCCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhh----------------------hcCHHHHHHH
Confidence 357789999999999999999874 1123456766 2221110 0133445555
Q ss_pred HHHHhcCceEEEEEecCCC
Q 047642 262 LYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~ 280 (718)
+.+.+...+ +||+|++..
T Consensus 176 i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHHCS-EEEEECCTT
T ss_pred HHHHHhhCC-EEEEecccc
Confidence 566665555 999999964
No 235
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.55 E-value=0.0068 Score=55.64 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKL 204 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v 204 (718)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.45 E-value=0.0021 Score=70.90 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=34.7
Q ss_pred CceeeccccHHHHHHHHhc----CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLK----DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|.++-.+.+.+.+.- .......+.++|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3478888777777554421 1223558999999999999999999983
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.45 E-value=0.0094 Score=55.45 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=62.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC---CCCHHHHHHHHHHHhcC------Cc---ccchHHhhh
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ---EYTTRDLLQKTIKSFQK------PK---IEDLELMER 252 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~l~~i~~~l~~------~~---~~~~~~~~~ 252 (718)
..|-|++..|.||||+|-.+.- +.-++-..+.++.... .+....++ +.+.. .. ..+....+.
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 4677777778999999987776 3333333445553332 22233333 33310 00 000000011
Q ss_pred cCHHHHHHHHHHHhcCceE-EEEEecCCCh-----hhhhHHHhhCCCCCCCcEEEEEecchhh
Q 047642 253 MTEEDLELHLYEFLEGRRY-LVVVDDIWHK-----SAWESLRRAFPDNGNGSRIVITTRNEPV 309 (718)
Q Consensus 253 ~~~~~l~~~l~~~L~~k~~-LlVLDdv~~~-----~~~~~l~~~l~~~~~gsriivTTR~~~v 309 (718)
..........++.+...+| |||||++-.. -..+.+...+.......-||+|+|...-
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 1122334445566655555 9999998432 2234455555444556789999998753
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.34 E-value=0.0065 Score=70.31 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.1
Q ss_pred ceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.++.++.+...+... +.....+.++|++|+|||++|+.+.+.
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4789888888887776532 122357899999999999999999984
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.16 E-value=0.013 Score=68.61 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=36.8
Q ss_pred ceeeccccHHHHHHHHhcC-------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLKD-------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.+..++.+...+... +.....+.|+|++|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999888888777542 112358899999999999999999883
No 240
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.08 E-value=0.037 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 241
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.07 E-value=0.011 Score=57.05 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=60.4
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccc----h---HH--------
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIED----L---EL-------- 249 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~----~---~~-------- 249 (718)
.+++|+|.+|+|||||++.+....... -..++|+.... ....+...+ ..++...... . ..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 589999999999999999998632111 12355655433 344443332 2333211100 0 00
Q ss_pred --hhhcCHHHHHHHHHHHhcC-ce--EEEEEecCC-----ChhhhhHHHhhCCC--CCCCcEEEEEecch
Q 047642 250 --MERMTEEDLELHLYEFLEG-RR--YLVVVDDIW-----HKSAWESLRRAFPD--NGNGSRIVITTRNE 307 (718)
Q Consensus 250 --~~~~~~~~l~~~l~~~L~~-k~--~LlVLDdv~-----~~~~~~~l~~~l~~--~~~gsriivTTR~~ 307 (718)
....+.+++...+...+.. +. .+||+|... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0112445555555554432 33 499999986 22222333322221 12477899998765
No 242
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.05 E-value=0.031 Score=53.83 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=34.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccc---cC-CCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDV---KG-GFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
-.+++|+|+.|+|||||++.+...... .. .-...+|+.-...+.... +..+.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~ 83 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR 83 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence 469999999999999999999762111 11 123477877655444433 33444443
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.04 E-value=0.021 Score=55.51 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=53.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccC----CCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH---hhhcCHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKG----GFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL---MERMTEE 256 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~---~~~~~~~ 256 (718)
-.+++|+|.+|+|||||+..+........ .-..++|+.....++...+ ..++..++.....-... ....+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35999999999999999999887321211 2346888887766555543 33444444321000000 0111222
Q ss_pred H---HHHHHHHHhc-CceEEEEEecCCC
Q 047642 257 D---LELHLYEFLE-GRRYLVVVDDIWH 280 (718)
Q Consensus 257 ~---l~~~l~~~L~-~k~~LlVLDdv~~ 280 (718)
+ ....+.+.+. .+.-+||+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4677889998753
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.04 E-value=0.041 Score=53.12 Aligned_cols=51 Identities=8% Similarity=-0.072 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEEecCCCh---hhhhHHHhh-CCCCCCCcEEEEEecchhhhhh
Q 047642 262 LYEFLEGRRYLVVVDDIWHK---SAWESLRRA-FPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~-l~~~~~gsriivTTR~~~v~~~ 312 (718)
+-..|..++-+++||+--.. ..-..+... +.....|..||++|.+...+..
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~ 195 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 195 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh
Confidence 44556667778999997542 333445443 2332346778999988776654
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.99 E-value=0.012 Score=60.75 Aligned_cols=89 Identities=20% Similarity=0.170 Sum_probs=55.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
-.++.|.|++|+||||||..+.... ...-..++|++....++.. .++.++..... .......+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~-l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKS-LLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGG-CEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhh-hhhhhccCHHHHHHHHH
Confidence 4699999999999999999998742 2222346788877776654 34445432110 00012234555555555
Q ss_pred HHhc-CceEEEEEecCCC
Q 047642 264 EFLE-GRRYLVVVDDIWH 280 (718)
Q Consensus 264 ~~L~-~k~~LlVLDdv~~ 280 (718)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4556899998753
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.0028 Score=60.86 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=61.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
-.++.|+|..|+||||++..+.+. ...+-..++.+.-.. +.. ....++..++..... .......++...+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~----~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPS----VEVESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCC----EEESSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccc----cccCCHHHHHHHHH
Confidence 468999999999999999888874 333322334443222 112 222333333321110 11123345555555
Q ss_pred HHhcCceE-EEEEecCCC--hhhhhHHHhhCCCCCCCcEEEEEecchh
Q 047642 264 EFLEGRRY-LVVVDDIWH--KSAWESLRRAFPDNGNGSRIVITTRNEP 308 (718)
Q Consensus 264 ~~L~~k~~-LlVLDdv~~--~~~~~~l~~~l~~~~~gsriivTTR~~~ 308 (718)
+.+.+.++ +||+|.+.. .+..+.+.. +.+ .|-.||+|-+..+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 55544444 999999864 234444432 222 2678999988443
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.94 E-value=0.005 Score=58.68 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+++|.+.+........+|+|+|..|.|||||++.+..-
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444554433334679999999999999999999873
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.90 E-value=0.046 Score=53.86 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999986
No 249
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0066 Score=57.48 Aligned_cols=41 Identities=34% Similarity=0.497 Sum_probs=32.2
Q ss_pred ccccHHHHHHHHhcC-CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 166 FEENTKMLIKQLLKD-EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 166 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
|++.++++.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445567777777653 23467999999999999999999986
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.79 E-value=0.032 Score=57.14 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccC----CCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH---hhhcCHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKG----GFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL---MERMTEE 256 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~---~~~~~~~ 256 (718)
-.++.|+|.+|+||||||..+........ .-..++|++....++...+. .++..++.....-... ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 35899999999999999999886422111 12467899888887777654 3455554321100000 0111222
Q ss_pred ---HHHHHHHHHhc--CceEEEEEecCC
Q 047642 257 ---DLELHLYEFLE--GRRYLVVVDDIW 279 (718)
Q Consensus 257 ---~l~~~l~~~L~--~k~~LlVLDdv~ 279 (718)
++...+...+. .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 23344444443 455688888874
No 251
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.78 E-value=0.0041 Score=63.92 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccc-cCCCceEEEEEecCCCCHHHHHHHHHHHhcCC---cccch
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDV-KGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKP---KIEDL 247 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~---~~~~~ 247 (718)
++++.+..-. .-..++|+|.+|+|||||++.+.+.... ...+. ++++-+.+..... .++.+.+... ...+.
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTS
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCC
Confidence 3445544332 2348899999999999999998873211 12333 3456677664322 2233333110 00000
Q ss_pred HHhhhcCH----HHHHHHHHHHhcCceEEEEEecCCC
Q 047642 248 ELMERMTE----EDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 248 ~~~~~~~~----~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
+....... -..++.+++ +++.+||++||+..
T Consensus 238 p~~~r~~~a~~alt~AEyfrd--~G~dVLil~DslTR 272 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVE--HKKDVIILLDSITR 272 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--TSCEEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh--cCCCEEEEEeCchH
Confidence 00000001 112333443 58999999999854
No 252
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.77 E-value=0.0038 Score=64.41 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=35.6
Q ss_pred CceeeccccHHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.+..++.+...+... +.....+.|+|++|+||||||+.+++.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45788877777766655432 223467899999999999999999983
No 253
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.73 E-value=0.033 Score=58.78 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=71.2
Q ss_pred hccCCceEEEEEecCCcccccccccccchhhhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccccChh-hc
Q 047642 554 LCSSLRFLRVLDLEDTRIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLPSQ-IS 631 (718)
Q Consensus 554 ~~~~l~~L~~L~l~~~~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~-i~ 631 (718)
.|..+..|+.+.+..+... - -...+..+..|+.+.+..+. +|. .+..+.+|+.+.+..+ ++.++.. |.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~---i---~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLR---I---GGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp TTTTCSSCCEEEECCTTCE---E---CSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred cccccccceeEEcCCCcce---e---eccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhc
Confidence 3445555555555544322 1 12334455555555544332 222 2345566666666433 5555433 55
Q ss_pred cccccceeeec---ccC-cccCCCccccccccceecc-ccchHHhcccCCCCeEEEeeccccHHHHhhccCCCCeE
Q 047642 632 KLHQLRHLIAR---PLG-HLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREIPYTNMNFILQVNSLRSL 702 (718)
Q Consensus 632 ~L~~L~~L~l~---~~~-p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L 702 (718)
++.+|+.+.+. ..+ ...+.++++|+.+.+-.+- ......|.++++|+.+.+..+...+...+.++++|+.+
T Consensus 318 ~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 66666666551 111 2234555666655543221 22344677777888887776643444556666666654
No 254
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.64 E-value=0.025 Score=57.85 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=55.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccC---------CC-----ceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKG---------GF-----DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL 249 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~ 249 (718)
-.++.|+|.+|+||||||..+........ .. ..++|++....++...+.. ++..++.....-...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46999999999999999998886422111 11 4678998888887776553 445554321100000
Q ss_pred ---hhhcCHH---HHHHHHHHHhcC--ceEEEEEecCC
Q 047642 250 ---MERMTEE---DLELHLYEFLEG--RRYLVVVDDIW 279 (718)
Q Consensus 250 ---~~~~~~~---~l~~~l~~~L~~--k~~LlVLDdv~ 279 (718)
....+.+ ++...+...+.. +.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 233445555543 45588888874
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.64 E-value=0.019 Score=59.27 Aligned_cols=89 Identities=20% Similarity=0.154 Sum_probs=53.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
-.++.|+|.+|+||||||..+... ....-..++|++....++.. ....++..... ..-....+.++....+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~-l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDS-LLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGG-CEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHH-eEEecCCCHHHHHHHHH
Confidence 458999999999999999998864 22222357899888776653 23444432110 00011223455555555
Q ss_pred HHhc-CceEEEEEecCCC
Q 047642 264 EFLE-GRRYLVVVDDIWH 280 (718)
Q Consensus 264 ~~L~-~k~~LlVLDdv~~ 280 (718)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 3456999999753
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.52 E-value=0.051 Score=56.05 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=40.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccC----CCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKG----GFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
.-.++.|+|.+|+||||||..++....... .-..++|++....++...+. .++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 356999999999999999999887422211 22468899988887776654 3444544
No 257
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.52 E-value=0.028 Score=59.32 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=72.3
Q ss_pred hhhcccccEEeeccCCcccccccccccCCCcEEEecCccccccCh-hhccccccceeeec---ccC-cccCCCccccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPRSIGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIAR---PLG-HLQVSTLTNLQTL 658 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~---~~~-p~~~~~l~~L~~L 658 (718)
+..+..|+.+.+..+...--...+.++..|+.+....+. +|. .+..+.+|+.+.+. ..+ ...+.++++|+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccccceechhhhcCCCCCCEE
Confidence 344555555555544222222234455556655554332 332 35677788877762 122 2346777888888
Q ss_pred cceecc-ccchHHhcccCCCCeEEEeecccc-HHHHhhccCCCCeEEEeeC
Q 047642 659 KYVNFQ-QWDAVDARNLINLQELEIREIPYT-NMNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 659 ~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~L~~L~l~~~ 707 (718)
.+-..- ......|.++++|+.+.+..+... -..+|.++.+|+.+.|..+
T Consensus 326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence 764322 334567889999999988776322 3456889999999999764
No 258
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.51 E-value=0.011 Score=59.28 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.5
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 181 EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 181 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.....+|+|+|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999988773
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.51 E-value=0.015 Score=60.13 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=52.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
-.++.|.|.+|+||||||..+..... ..-..++|++....++... +..++..... .......+.+++...++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~-l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDN-LLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGG-CEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhh-eeeeCCCCHHHHHHHHH
Confidence 45899999999999999998887422 2223588999887776542 3444432110 00011123444444444
Q ss_pred HHhc-CceEEEEEecCC
Q 047642 264 EFLE-GRRYLVVVDDIW 279 (718)
Q Consensus 264 ~~L~-~k~~LlVLDdv~ 279 (718)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4332 445589999874
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.49 E-value=0.036 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.45 E-value=0.026 Score=58.57 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=54.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLY 263 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 263 (718)
-.++.|.|.+|+||||||..+.... ...-..++|++....++.. ....++..... +.-....+.+++...+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~-l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDE-LLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGG-CEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHH-ceeecCCcHHHHHHHHH
Confidence 3588999999999999999887742 2222368899988777654 23444432110 00011224456666666
Q ss_pred HHhcC-ceEEEEEecCC
Q 047642 264 EFLEG-RRYLVVVDDIW 279 (718)
Q Consensus 264 ~~L~~-k~~LlVLDdv~ 279 (718)
...+. +.-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 55543 44599999975
No 262
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.40 E-value=0.044 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 263
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.40 E-value=0.057 Score=54.09 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=54.1
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHH-HHHHHH
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDL-ELHLYE 264 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~ 264 (718)
++-|.|.+|+||||||.++.......+.-..++||+....++.. .+++++..... +-.....+.++. ...+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~-llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPER-VIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGG-EEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHH-eEEEcCCCHHHHHHHHHHH
Confidence 78999999999999998887742211112457899888887764 25666653221 000122344444 333322
Q ss_pred H--h-cCceEEEEEecCCC
Q 047642 265 F--L-EGRRYLVVVDDIWH 280 (718)
Q Consensus 265 ~--L-~~k~~LlVLDdv~~ 280 (718)
. + .++.-+||+|-|..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 3 34678999999864
No 264
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.36 E-value=0.083 Score=52.85 Aligned_cols=51 Identities=8% Similarity=-0.072 Sum_probs=31.7
Q ss_pred HHHHhcCceEEEEEecCCCh---hhhhHHHhh-CCCCCCCcEEEEEecchhhhhh
Q 047642 262 LYEFLEGRRYLVVVDDIWHK---SAWESLRRA-FPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 262 l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~-l~~~~~gsriivTTR~~~v~~~ 312 (718)
+-..|..++-+++||+--.. ..-..+... +.....|..||++|.+...+..
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc
Confidence 44556667778999997642 333344443 2222347789999988876654
No 265
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.36 E-value=0.011 Score=63.67 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred CceeeccccHHHHHH---HHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIK---QLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.++.++.+.. ++..+....+-+.++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999988776544 44444333457889999999999999999984
No 266
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.31 E-value=0.069 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4899999999999999999987
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.28 E-value=0.0076 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999883
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.26 E-value=0.011 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 269
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.23 E-value=0.0092 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.16 E-value=0.0093 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.15 E-value=0.0096 Score=62.19 Aligned_cols=46 Identities=33% Similarity=0.390 Sum_probs=35.6
Q ss_pred ceeeccccHHHHHHHHhc-------------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLK-------------DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.+..++.+...+.. .......|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 378988888888877731 1113457899999999999999999984
No 272
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.10 E-value=0.088 Score=56.03 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCC-HHHHHHHHHHHhcCC-------c
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYT-TRDLLQKTIKSFQKP-------K 243 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i~~~l~~~-------~ 243 (718)
+.++.|..-. .-+.++|+|.+|+|||+|+.++.++. .+.+-+.++++-+.+... ..+++.++...=... .
T Consensus 154 rvID~l~pig-kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~r 231 (498)
T 1fx0_B 154 KVVNLLAPYR-RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESK 231 (498)
T ss_dssp TTHHHHSCCC-TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCC
T ss_pred eEeeeecccc-cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccc
Confidence 3455554432 23468999999999999999998842 233557888998888765 345555554431110 0
Q ss_pred c------cchHHhhhcCHHHHHHHHHHHh---cCceEEEEEecCCC
Q 047642 244 I------EDLELMERMTEEDLELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 244 ~------~~~~~~~~~~~~~l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
. .+.+...........-.+-+++ +++.+||++||+..
T Consensus 232 tvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 232 VALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 0001111222222333344555 35899999999853
No 273
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.07 E-value=0.081 Score=55.52 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=37.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccc----cCCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDV----KGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
-.++.|+|.+|+|||||+..++-.... .+.-..++|+.....+....+ ..+.+.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 359999999999999999976532111 112345888887776666543 335555543
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.04 E-value=0.0096 Score=56.21 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 275
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.04 E-value=0.012 Score=63.64 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=35.9
Q ss_pred ceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.++.++.+...+..+. -|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 47899988888887776653 6889999999999999999984
No 276
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.03 E-value=0.046 Score=54.96 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|.+|+||||++..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998863
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.01 E-value=0.077 Score=53.95 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=38.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
-.++.|.|.+|+||||||..+..+...++ ..++|++.. .+...+...++....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 35899999999999999999886533222 457777655 566777777766543
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.94 E-value=0.038 Score=58.68 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=37.7
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHH
Q 047642 173 LIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKT 235 (718)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i 235 (718)
.++.|..-.. -+.++|+|.+|+|||||+..+..+.... +-+.++++.+.+..+. .+++.++
T Consensus 141 ~ID~L~pi~k-Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 141 VVDLLAPYIK-GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp HHHHHSCEET-TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 4555543211 2368999999999999999998753222 2245567777776533 3344434
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.012 Score=54.65 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.91 E-value=0.0098 Score=54.56 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 281
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.88 E-value=0.011 Score=58.23 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCceeeccccHHHHHHHHh---cC------C-CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLL---KD------E-QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~---~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|.++.+.++.+... .. + .-.+-+.|+|++|+||||||+.+++.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468888876666554332 11 0 01123899999999999999999984
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.86 E-value=0.015 Score=54.85 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|+.|+||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999874
No 283
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.83 E-value=0.1 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.82 E-value=0.012 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 285
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.81 E-value=0.024 Score=52.97 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=63.0
Q ss_pred cccCcEeeeecC-CccchhhhhhhhhccCCceEEEEEecCCcccc--cccccccchhhhhcccccEEeeccCCcc-----
Q 047642 530 YPRLRSLLFFNP-DRESINIKHLQTLCSSLRFLRVLDLEDTRIEH--SGKVLRLTDSIGKLIHLRYFGFKCNSLV----- 601 (718)
Q Consensus 530 ~~~l~~L~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~l~~~p~~i~~l~~L~~L~l~~~~l~----- 601 (718)
-+.|+.|.+.++ .........+-..+..-+.|+.|+|++|.+.+ +.. +...+..-+.|+.|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---lA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG---LIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---HHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---HHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456777777654 44332233344555666778888888888763 222 3344555677888888888876
Q ss_pred cccccccccCCCcEEEecCccc---c-----ccChhhccccccceeee
Q 047642 602 EFPRSIGNLQCLKTMVASGNSC---W-----KLPSQISKLHQLRHLIA 641 (718)
Q Consensus 602 ~lp~~i~~l~~L~~L~l~~~~i---~-----~lp~~i~~L~~L~~L~l 641 (718)
.|-+.+..-+.|+.|+|++|.. . .+-..+..-++|..|++
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 2344444455688888875432 2 12233344455666554
No 286
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.80 E-value=0.15 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999987
No 287
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.79 E-value=0.058 Score=57.16 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCH-HHHHHHHHHH
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTT-RDLLQKTIKS 238 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i~~~ 238 (718)
+.++.|..-. .-+-++|+|.+|+|||+|+.++.++. .+.+-+.++++-+.+.... .++++++...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566664322 12478999999999999999998842 2334466788888887543 4555555543
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.79 E-value=0.065 Score=56.68 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988874
No 289
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.79 E-value=0.02 Score=58.53 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=31.2
Q ss_pred eeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 164 VGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
|+.+.-.+++++.+... .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445556666666432 23456799999999999999998887
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.79 E-value=0.0059 Score=63.21 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=63.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCC--cccchHHhhhcCHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKP--KIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~--~~~~~~~~~~~~~~~l~~~l 262 (718)
.+++|+|+.|+|||||.+.+... +.......+ +++.+..... .... ...+.+ .. .........+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~-~~-~~~~~~~~~L 189 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQRE-VH-RDTLGFSEAL 189 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEE-BT-TTBSCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh---------hhccccceeeee-ec-cccCCHHHHH
Confidence 49999999999999999998763 211111222 2222221100 0000 000000 00 0011233468
Q ss_pred HHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhhh
Q 047642 263 YEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAMI 312 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~~ 312 (718)
...|...+=+|++|.+-+.+.++.+.... ..|..||+||.....+..
T Consensus 190 a~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 190 RSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred HHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 88888899999999999877766655442 236679999987776543
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.79 E-value=0.016 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.13 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999987
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.75 E-value=0.023 Score=64.83 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=35.7
Q ss_pred CCceeeccccHHHHHHHHhcC-----------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLKD-----------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-..+.|.++.+++|.+.+.-. -...+-|.++|++|.|||.||+++++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 345778888888877665321 112456789999999999999999994
No 294
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.74 E-value=0.024 Score=56.84 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.73 E-value=0.015 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999883
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.68 E-value=0.02 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 297
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.64 E-value=0.02 Score=54.33 Aligned_cols=24 Identities=46% Similarity=0.710 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|+|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999987
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.62 E-value=0.088 Score=54.32 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCcccc---CCCc-eEEEEEecCCCCHHHHHHHHHHHhcCCcccchHH--h-hhc--
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVK---GGFD-CRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLEL--M-ERM-- 253 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~--~-~~~-- 253 (718)
.-.++.|+|.+|+|||||+..+....... +... .++|+.....+.... +..+.+..+.....-... + ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999998742111 1112 348888766554443 333444433211100000 0 001
Q ss_pred -CHHHHHHHHHHHhc------CceEEEEEecCCC
Q 047642 254 -TEEDLELHLYEFLE------GRRYLVVVDDIWH 280 (718)
Q Consensus 254 -~~~~l~~~l~~~L~------~k~~LlVLDdv~~ 280 (718)
...++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 12233344444443 4677999999864
No 299
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.62 E-value=0.016 Score=57.85 Aligned_cols=50 Identities=26% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCCCceeeccccHHHHHHHHhcC---------C-CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 158 AGNEQVVGFEENTKMLIKQLLKD---------E-QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 158 ~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..-.+++|.++.++++.+....- + .-.+-+.|+|++|+||||||+.++..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 33456889887776665543210 0 01123899999999999999999984
No 300
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.61 E-value=0.073 Score=56.04 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=61.3
Q ss_pred hhhcccccEEeeccCCcccccc-cccccCCCcEEEecCccccccChh-hccccccceeeec---ccC-cccCCCcccccc
Q 047642 584 IGKLIHLRYFGFKCNSLVEFPR-SIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIAR---PLG-HLQVSTLTNLQT 657 (718)
Q Consensus 584 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~---~~~-p~~~~~l~~L~~ 657 (718)
|..+..|+.+.+..+. ..++. .+.++.+|+.+.+. +.++.++.. |.++.+|+.+.+. ..+ ...+..+++|+.
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCE
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCE
Confidence 4455555555554332 22322 24455666666663 345555543 5556666666551 111 223555566666
Q ss_pred ccceecc-ccchHHhcccCCCCeEEEeeccccHHHHhhccCCCCeEEEeeCCC
Q 047642 658 LKYVNFQ-QWDAVDARNLINLQELEIREIPYTNMNFILQVNSLRSLTLQTDTA 709 (718)
Q Consensus 658 L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~ 709 (718)
+.+-..- ......|.++++|+.+.+.++... ...+.....|+.|.+..+..
T Consensus 339 i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~-~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 339 IAIPSSVTKIPESAFSNCTALNNIEYSGSRSQ-WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEECTTCCBCCGGGGTTCTTCCEEEESSCHHH-HHTCBCCCCC----------
T ss_pred EEECcccCEEhHhHhhCCCCCCEEEECCceee-hhhhhccCCCCEEEeCCCCE
Confidence 5542221 334557888999999988876222 24567778888888876543
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.61 E-value=0.016 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 45899999999999999997554
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.56 E-value=0.02 Score=54.04 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.54 E-value=0.11 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999987
No 304
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.54 E-value=0.037 Score=48.03 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=33.7
Q ss_pred EEEecCCccc-ccccccccchhhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccc
Q 047642 563 VLDLEDTRIE-HSGKVLRLTDSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSC 623 (718)
Q Consensus 563 ~L~l~~~~l~-~~~~l~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i 623 (718)
.++.+++.++ . . +|..+. .+|++|+|++|+|+.||.. +..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~--~---vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWA--S---LPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTT--T---SCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccc--c---CCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555665554 0 1 554332 3577777777777777765 35677777777777743
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.54 E-value=0.019 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 306
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.53 E-value=0.14 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4899999999999999999987
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.53 E-value=0.014 Score=55.23 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.52 E-value=0.017 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 309
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.50 E-value=0.11 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|.++|.+|+||||+|..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988864
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.50 E-value=0.021 Score=54.34 Aligned_cols=24 Identities=50% Similarity=0.630 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.49 E-value=0.018 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.017 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.45 E-value=0.012 Score=54.64 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999987
No 314
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.02 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 315
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.44 E-value=0.017 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 316
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.43 E-value=0.015 Score=60.23 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.2
Q ss_pred CCceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 160 NEQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 160 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-..++|.+..++.+...+.... ..-|.|+|.+|+|||+||+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886655444443322 224889999999999999999984
No 317
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.43 E-value=0.015 Score=53.80 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|+|++|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999873
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.43 E-value=0.023 Score=57.63 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=30.8
Q ss_pred eeccccHHHHHHHHhcC--CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 164 VGFEENTKMLIKQLLKD--EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 164 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+|-...+..+...+... ...+.+|+|.|..|+||||||+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444455555444443 34577999999999999999999876
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.41 E-value=0.018 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999883
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.41 E-value=0.019 Score=54.30 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.40 E-value=0.019 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|.|+|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 322
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.38 E-value=0.02 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.37 E-value=0.02 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 324
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.36 E-value=0.021 Score=52.76 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 325
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.36 E-value=0.024 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
....+|+|.|++|+||||+|+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999986
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.36 E-value=0.022 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 327
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.36 E-value=0.021 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999874
No 328
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.33 E-value=0.031 Score=54.95 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.5
Q ss_pred HHHHHHHHhcC---CCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 170 TKMLIKQLLKD---EQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 170 ~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 23467999999999999999999987
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.31 E-value=0.016 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.31 E-value=0.023 Score=53.59 Aligned_cols=24 Identities=50% Similarity=0.534 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.30 E-value=0.02 Score=55.17 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999986
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.28 E-value=0.02 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|+|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.28 E-value=0.017 Score=53.87 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 334
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.27 E-value=0.12 Score=52.05 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999988873
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.27 E-value=0.022 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 336
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.21 E-value=0.076 Score=53.56 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|+|+|.+|+||||++..++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3579999999999999999999874
No 337
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.17 E-value=0.024 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 338
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.17 E-value=0.057 Score=57.14 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+.+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3689999999999999999888863
No 339
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.15 E-value=0.025 Score=59.25 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=34.1
Q ss_pred ceeeccccHHHHHHHHhc----------------------------CCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 162 QVVGFEENTKMLIKQLLK----------------------------DEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 162 ~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|.++.++.|...+.. .......+.++|++|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 477888877777766620 0112346889999999999999999983
No 340
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.15 E-value=0.024 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...|+|.|++|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 341
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.14 E-value=0.0081 Score=55.94 Aligned_cols=22 Identities=32% Similarity=0.141 Sum_probs=18.9
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966665
No 342
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.12 E-value=0.025 Score=52.55 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|.|+|++|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999874
No 343
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.10 E-value=0.022 Score=52.36 Aligned_cols=21 Identities=48% Similarity=0.686 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 344
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.09 E-value=0.026 Score=52.56 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 345
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.05 E-value=0.2 Score=48.33 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=54.2
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCc-cccCCC-ceEEEEEecCCCCHHHHHHHHHHHhcCCccc-
Q 047642 169 NTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNST-DVKGGF-DCRAWVCVTQEYTTRDLLQKTIKSFQKPKIE- 245 (718)
Q Consensus 169 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F-~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~- 245 (718)
..++++..+..+. .+.|+|..|+||||+.....-+. ...+.. ...+.+..........+...+...++.....
T Consensus 65 ~q~~~i~~i~~g~----~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 65 FESEILEAISQNS----VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GHHHHHHHHHHCS----EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred HHHHHHHHHhcCC----EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 3455666665543 88999999999998665544321 112222 2234333333333334444444443321100
Q ss_pred ---c----------hHHhhhcCHHHHHHHHHHHhcCceEEEEEecCCCh
Q 047642 246 ---D----------LELMERMTEEDLELHLYEFLEGRRYLVVVDDIWHK 281 (718)
Q Consensus 246 ---~----------~~~~~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~~ 281 (718)
. ...+--.+...+...+...+.+- -+||+|.++..
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 0 00011123455556665544333 47899999863
No 346
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.04 E-value=0.02 Score=53.94 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999976
No 347
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.01 E-value=0.019 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.01 E-value=0.026 Score=53.00 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 349
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.01 E-value=0.11 Score=54.77 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999998874
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.99 E-value=0.028 Score=52.59 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 351
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.98 E-value=0.58 Score=49.00 Aligned_cols=100 Identities=7% Similarity=-0.024 Sum_probs=70.8
Q ss_pred ccccCCCcEEEecCccccccCh-hhccccccceeeec---ccCc-ccCCCccccccccceecc-ccchHHhcccCCCCeE
Q 047642 607 IGNLQCLKTMVASGNSCWKLPS-QISKLHQLRHLIAR---PLGH-LQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQEL 680 (718)
Q Consensus 607 i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~---~~~p-~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L 680 (718)
+.++.+|+.+.+..+ +..++. .|.++.+|+.+.+. ..++ ..+..+.+|+.+.+-..- ......|.++++|+.+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEE
Confidence 456788898888654 344443 47888999998872 2233 346778888888764332 3345678999999999
Q ss_pred EEeeccccH-HHHhhccCCCCeEEEeeC
Q 047642 681 EIREIPYTN-MNFILQVNSLRSLTLQTD 707 (718)
Q Consensus 681 ~l~~~~~~~-~~~l~~l~~L~~L~l~~~ 707 (718)
.|..+...+ ..+|.++.+|+.+.+.++
T Consensus 340 ~ip~sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 340 AIPSSVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred EECcccCEEhHhHhhCCCCCCEEEECCc
Confidence 997763333 457899999999999864
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.98 E-value=0.027 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 353
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.97 E-value=0.059 Score=46.75 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred cEEeeccCCcc--cccccccccCCCcEEEecCccccccChh-hccccccceeee
Q 047642 591 RYFGFKCNSLV--EFPRSIGNLQCLKTMVASGNSCWKLPSQ-ISKLHQLRHLIA 641 (718)
Q Consensus 591 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 641 (718)
..++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|+.|++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 62 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHL 62 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEEC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEe
Confidence 47888889998 9997653 4799999999999999886 678999999987
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.93 E-value=0.02 Score=52.33 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.93 E-value=0.031 Score=56.71 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999887
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.92 E-value=0.026 Score=51.31 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|..|+|||||+..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999873
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.89 E-value=0.028 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999995
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.89 E-value=0.027 Score=51.22 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 359
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.89 E-value=0.068 Score=54.68 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=58.3
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
.+++|+|..|.|||||++.+..- +. .-...+.+.-........ ..... .-+.. ........+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~----------~~~~i--~~~~g-gg~~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKH----------HKNYT--QLFFG-GNITSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSS----------CSSEE--EEECB-TTBCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeecccccc----------chhEE--EEEeC-CChhHHHHHHH
Confidence 38999999999999999999883 22 223455554222211000 00000 00000 00112334566
Q ss_pred HhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhh
Q 047642 265 FLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVA 310 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~ 310 (718)
.|..++-+|++|++-+.+.++.+.. +..+ +.-+|+||......
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~-~~~g--~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNV-LCSG--HKGTLTTLHAGSSE 278 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHH-HHTT--CCCEEEEEECSSHH
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHH-HhcC--CCEEEEEEcccHHH
Confidence 7777888999999987665554433 3221 22367777665543
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.87 E-value=0.027 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|+|++|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 361
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.87 E-value=0.18 Score=54.26 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=28.8
Q ss_pred eeeccccHHHHHH----HHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 163 VVGFEENTKMLIK----QLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 163 ~vGr~~~~~~l~~----~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
|-+...+-++.+. .+..+. ..+.|.|.+|+||||++..+...
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344444444444 343332 38999999999999999998874
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.83 E-value=0.019 Score=53.15 Aligned_cols=23 Identities=39% Similarity=0.362 Sum_probs=17.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.80 E-value=0.029 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 364
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.77 E-value=0.46 Score=48.75 Aligned_cols=137 Identities=11% Similarity=-0.027 Sum_probs=81.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhh
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELME 251 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~ 251 (718)
++.+.+. + .-..+..++|..|.||++.|+.+.+... ...|+....+.+....+..++
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l-------------------- 64 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAI-------------------- 64 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHH--------------------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHH--------------------
Confidence 3444454 2 2356899999999999999998877311 123432222223333333322
Q ss_pred hcCHHHHHHHHHH-HhcCceEEEEEecCCC---hhhhhHHHhhCCCCCCCcEEEEEecc-------hhhhhhcCCCCcee
Q 047642 252 RMTEEDLELHLYE-FLEGRRYLVVVDDIWH---KSAWESLRRAFPDNGNGSRIVITTRN-------EPVAMITDEKNFVY 320 (718)
Q Consensus 252 ~~~~~~l~~~l~~-~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gsriivTTR~-------~~v~~~~~~~~~~~ 320 (718)
...+.. -+-+++-++|+|+++. .+.++.+...+..-..++.+|++|.. ..+..........+
T Consensus 65 -------~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 65 -------FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp -------HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred -------HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 222211 1345567888999865 45678888777765667887776643 23444433333678
Q ss_pred eccCCCHHhHHHHHHhhh
Q 047642 321 KLRFLNQEESWKLFCKKA 338 (718)
Q Consensus 321 ~l~~L~~~es~~Lf~~~a 338 (718)
+..+++.++-...+...+
T Consensus 138 ~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp EECCCCTTHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHH
Confidence 888898888776666554
No 365
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.76 E-value=0.028 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 366
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.74 E-value=0.034 Score=56.48 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=27.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
+.+||+|.|-|||||||.|.-+.-- ....-..+.-|....
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 5789999999999999988766552 222222355555543
No 367
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.74 E-value=0.031 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 368
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.71 E-value=0.049 Score=56.48 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++.+.+........+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555556544456789999999999999999998763
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.71 E-value=0.037 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|+.|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999876
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.71 E-value=0.049 Score=55.60 Aligned_cols=25 Identities=44% Similarity=0.634 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+++|+|+.|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998873
No 371
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.69 E-value=0.58 Score=60.57 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=103.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYE 264 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 264 (718)
+-|.++|++|+|||++|+.+... . ..+ ....++.+...+...+.+.+-..+..............
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~-~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~----------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--S-SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK----------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--C-SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB-----------
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--C-CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC-----------
Confidence 46789999999999999777663 1 222 24567777777776655554444332110000000000
Q ss_pred HhcCceEEEEEecCCCh--h------hhhHHHhhCCCC-----CCC-------cEEEEEecchh------hhhhcCCCCc
Q 047642 265 FLEGRRYLVVVDDIWHK--S------AWESLRRAFPDN-----GNG-------SRIVITTRNEP------VAMITDEKNF 318 (718)
Q Consensus 265 ~L~~k~~LlVLDdv~~~--~------~~~~l~~~l~~~-----~~g-------sriivTTR~~~------v~~~~~~~~~ 318 (718)
-.+|+.++.+||+.-. + ..+-+...+..+ ..+ ..+|.+|.... +-........
T Consensus 1333 -~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1333 -SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp -SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred -CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 0367889999997532 1 233333332211 111 23333442221 1111111114
Q ss_pred eeeccCCCHHhHHHHHHhhhCCCCCCCCcCCCCchHHHHHHHHHHHhccCChhHHHHHHHHhhccccCCCCchHhHHHhc
Q 047642 319 VYKLRFLNQEESWKLFCKKAFPDTADGQATVCSPGLEKLGREMVEKCREEIPHEWHTVKNHLWWHLTQDSDHVSPILALS 398 (718)
Q Consensus 319 ~~~l~~L~~~es~~Lf~~~af~~~~~~~~~~~~~~l~~~~~~I~~~c~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~s 398 (718)
++.+...+.++-..+|.......-. ..+++..++..|+... ..-|..+.+.+... . +.-
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~l~------~~~~v~~~~~~lv~at----i~~y~~v~~~~~~~-~----------k~H 1470 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAIFK------LVPEFRSYTEPFARAS----VHLYNECKARYSTG-L----------QSH 1470 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHHTT------SSGGGGGGHHHHHHHH----HHHHHHHHHHSCTT-T----------CTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhc------cCHHHHHHHHHHHHHH----HHHHHHHHHHcCCc-c----------CCC
Confidence 6778888887777777654321111 1234455556665543 44566665554211 0 011
Q ss_pred ccCCChhhHHHHhhccC-CCCCCeecHHHHHHHHHHcCCc
Q 047642 399 YDELPYQLKSCFLYLSL-FPEDSLIDTEKLIRLWIAEGFI 437 (718)
Q Consensus 399 y~~L~~~~k~cfl~la~-Fp~~~~i~~~~li~~W~a~g~i 437 (718)
|.-=+.++-+.|.-+.. -|....-+...++++|+.|..=
T Consensus 1471 Y~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~R 1510 (2695)
T 4akg_A 1471 YLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWR 1510 (2695)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHH
Confidence 11111222222222111 1222233578999999988753
No 372
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.67 E-value=0.049 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999874
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.65 E-value=0.038 Score=52.69 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999884
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.63 E-value=0.033 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.63 E-value=0.021 Score=54.36 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|+|..|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999873
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.61 E-value=0.04 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999999999999873
No 377
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.60 E-value=0.034 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.027 Score=51.52 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 379
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.59 E-value=0.033 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 380
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.59 E-value=0.072 Score=56.07 Aligned_cols=93 Identities=15% Similarity=0.310 Sum_probs=51.2
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCc----eEEEEEecCCCC-HHHHHHHHHHH--hcCC----cccchHHhhhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFD----CRAWVCVTQEYT-TRDLLQKTIKS--FQKP----KIEDLELMERMT 254 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~~l~~i~~~--l~~~----~~~~~~~~~~~~ 254 (718)
-++|.|..|+|||+|+.++.+.... +.+ .++++-+.+... ..+++.++... +... ...+.+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 5789999999999999999986433 223 566777777654 34444444332 1100 000001001111
Q ss_pred HHHHHHHHHHHh---cCceEEEEEecCCC
Q 047642 255 EEDLELHLYEFL---EGRRYLVVVDDIWH 280 (718)
Q Consensus 255 ~~~l~~~l~~~L---~~k~~LlVLDdv~~ 280 (718)
.....-.+-+++ +++.+||++||+..
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111122234444 37899999999853
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.57 E-value=0.04 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999974
No 382
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.53 E-value=0.057 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999987
No 383
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.48 E-value=0.046 Score=51.06 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 170 TKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 170 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+..+..++.. -+....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433 223347999999999999999999884
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.48 E-value=0.031 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.765 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 385
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.46 E-value=0.061 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 386
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.45 E-value=0.035 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.42 E-value=0.036 Score=51.83 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.42 E-value=0.042 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 389
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.38 E-value=0.014 Score=60.02 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCcccc-CCCceEEEEEecCC
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVK-GGFDCRAWVCVTQE 225 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~ 225 (718)
++++.|..-. .-+.++|+|.+|+|||+|++++.+..... ..+. ++++-+.+.
T Consensus 164 raID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 5666665432 23478999999999999999998842211 2233 345666655
No 390
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.38 E-value=0.038 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 391
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.36 E-value=0.049 Score=52.05 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=27.8
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 168 ENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 168 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+..+++.+.+... ...+|+|+|.+|+|||||+..+...
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444444444332 4679999999999999999998874
No 392
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.34 E-value=0.036 Score=58.78 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=35.5
Q ss_pred CceeeccccHHHHHHHHhcC------------CCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKD------------EQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 35788888888877666321 112456889999999999999999983
No 393
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.32 E-value=0.071 Score=54.05 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 394
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.29 E-value=0.26 Score=54.47 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 168 ENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 168 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
++-.+.+..+.. .+++.|.|.+|+||||++..+...
T Consensus 192 ~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 192 EEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp HHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445555443 248899999999999999998873
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.28 E-value=0.046 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 396
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.27 E-value=0.043 Score=55.39 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+++|+|++|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999999986
No 397
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.27 E-value=0.065 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999986
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.26 E-value=0.04 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.24 E-value=0.047 Score=51.88 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|+|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.20 E-value=0.036 Score=53.19 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 401
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.20 E-value=0.073 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999987
No 402
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.14 E-value=0.069 Score=52.64 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 403
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.14 E-value=0.087 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998873
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.11 E-value=0.043 Score=52.32 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.10 E-value=0.039 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 406
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.09 E-value=0.044 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|+|.|+.|+||||+|+.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999883
No 407
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.09 E-value=0.046 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 359999999999999999999873
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.06 E-value=0.056 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+++|+|+.|.|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999863
No 409
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.03 E-value=0.077 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999987
No 410
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.02 E-value=0.31 Score=53.11 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=37.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
-.++.|.|.+|+||||||..+..+.... +-..++|++.. -+..++...++....+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E--~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLE--ESVEETAEDLIGLHNR 296 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESS--SCHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEecc--CCHHHHHHHHHHHHcC
Confidence 4589999999999999999988753322 12346777654 3566777776655443
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.89 E-value=0.081 Score=51.65 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.85 E-value=0.051 Score=53.03 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999999998884
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.84 E-value=0.041 Score=53.79 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.83 E-value=0.083 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.83 E-value=0.072 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 416
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.82 E-value=0.083 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999987
No 417
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.80 E-value=0.4 Score=48.86 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=38.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQK 241 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~ 241 (718)
-.++.|.|.+|+||||||..++.+... +-..++|++. +-+...+...++.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhC
Confidence 358999999999999999998875332 2234666654 45677777777766554
No 418
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.80 E-value=0.06 Score=54.29 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|+.|+||||+++.++.-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 419
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.78 E-value=0.052 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 420
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.77 E-value=0.085 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 421
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.72 E-value=0.086 Score=52.24 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.72 E-value=0.038 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=16.0
Q ss_pred EEEEEEecCCchHHHHHHHHh-c
Q 047642 185 FVISILGMGGLGKTTLARKLV-N 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~-~ 206 (718)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 423
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.71 E-value=0.26 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 424
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.71 E-value=0.087 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999986
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.66 E-value=0.057 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999883
No 426
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.63 E-value=0.31 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999884
No 427
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.58 E-value=0.43 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.58 E-value=0.34 Score=51.76 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=44.1
Q ss_pred eccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhc
Q 047642 165 GFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQ 240 (718)
Q Consensus 165 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~ 240 (718)
|...-...+-+.+ .+=..-.++.|.|.+|+||||||..++.+.... +-..++|++.. -+...+...++....
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHHc
Confidence 3344444444444 332234589999999999999999988753222 12346776654 456677776665443
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.52 E-value=0.06 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 430
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.50 E-value=0.31 Score=51.95 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCccccCCCce-EEEEEecCCCCH-HHHHHHHHHHhc--C-----
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLA-RKLVNSTDVKGGFDC-RAWVCVTQEYTT-RDLLQKTIKSFQ--K----- 241 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~~l~~i~~~l~--~----- 241 (718)
+.++.|..-. .-+-++|+|.+|+|||+|| .++.|.. .-+. ++++-+.+.... .++.+.+...=. .
T Consensus 164 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 164 KAIDSMIPIG-RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHHHSCEE-TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccc-cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence 4555554321 1236899999999999995 5888742 3453 577778877543 344444433100 0
Q ss_pred -CcccchHHhhhc----CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 242 -PKIEDLELMERM----TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 242 -~~~~~~~~~~~~----~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
+... +..... ..-...+.++. +++.+||++||+..
T Consensus 239 atad~--p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~DslTr 278 (515)
T 2r9v_A 239 ASASD--PASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDLSK 278 (515)
T ss_dssp ECTTS--CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHH
T ss_pred ECCCC--CHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccHHH
Confidence 0000 000000 11123333443 58999999999853
No 431
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.49 E-value=0.06 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 432
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.49 E-value=0.11 Score=54.73 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=33.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCcccc--------CCCc-eEEEEEecCCCCH-HHHHHHH
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVK--------GGFD-CRAWVCVTQEYTT-RDLLQKT 235 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~~~-~~~l~~i 235 (718)
+-++|.|.+|+|||+|+.++.+..... ++=+ .++++-+.+.... .++..++
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l 208 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF 208 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHh
Confidence 367899999999999999999864431 1111 5667777776543 3444443
No 433
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.48 E-value=0.097 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.47 E-value=0.062 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.44 E-value=0.09 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 436
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.43 E-value=0.06 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.42 E-value=0.06 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999874
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.34 Score=53.79 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEE-------------------------------EEEecCCCCHH-----
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRA-------------------------------WVCVTQEYTTR----- 229 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-------------------------------wv~vs~~~~~~----- 229 (718)
+++|+|+.|+|||||.+.+.. ......+.+ .+...+..+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G---ll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG---KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIK 181 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT---SSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCS
T ss_pred EEEEECCCCChHHHHHHHHhc---CCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhc
Q ss_pred ------------------HHHHHHHHHhcCCcccchHHhhhcCHHHHHHHHHHHhcCceEEEEEe------cCCChhhhh
Q 047642 230 ------------------DLLQKTIKSFQKPKIEDLELMERMTEEDLELHLYEFLEGRRYLVVVD------DIWHKSAWE 285 (718)
Q Consensus 230 ------------------~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVLD------dv~~~~~~~ 285 (718)
+...++++.++.....+.....-..-+.-.-.+-..|..++-+++|| |........
T Consensus 182 ~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~ 261 (608)
T 3j16_B 182 GPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261 (608)
T ss_dssp SSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHH
Q ss_pred HHHhhCCCCCCCcEEEEEecchhhhhhcCC
Q 047642 286 SLRRAFPDNGNGSRIVITTRNEPVAMITDE 315 (718)
Q Consensus 286 ~l~~~l~~~~~gsriivTTR~~~v~~~~~~ 315 (718)
.+...+... |..||++|.+...+.....
T Consensus 262 ~~l~~l~~~--g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 262 QIIRSLLAP--TKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp HHHHGGGTT--TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHhC--CCEEEEEeCCHHHHHHhCC
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.38 E-value=0.14 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 440
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.37 E-value=0.064 Score=60.02 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=35.7
Q ss_pred CceeeccccHHHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 161 EQVVGFEENTKMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 161 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46889888887777776654 37899999999999999999983
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.30 E-value=0.083 Score=54.92 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 171 KMLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 171 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+++-+.-.-....+++|+|++|+|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433333456999999999999999999997
No 442
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.23 E-value=0.11 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 443
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.11 E-value=0.44 Score=50.67 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCccccCCCc-eEEEEEecCCCCH-HHHHHHHHHHhcCCc-----
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLA-RKLVNSTDVKGGFD-CRAWVCVTQEYTT-RDLLQKTIKSFQKPK----- 243 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~l~~i~~~l~~~~----- 243 (718)
+.++.|..-. .-+-++|.|..|+|||+|| ..+.|. .+-+ .++++-+.+.... .++..++.+. +.-.
T Consensus 151 kaID~l~Pig-rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~-g~m~~tvvV 224 (513)
T 3oaa_A 151 KAVDSMIPIG-RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEH-GALANTIVV 224 (513)
T ss_dssp HHHHHHSCCB-TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHH-SCSTTEEEE
T ss_pred eeeccccccc-cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhc-CcccceEEE
Confidence 4555554322 1236799999999999996 577773 2233 3578888887543 3444443332 1100
Q ss_pred --ccchHHh----hhcCHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 244 --IEDLELM----ERMTEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 244 --~~~~~~~----~~~~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..+.+.. .....-.+.+.++. +++.+||++||+..
T Consensus 225 ~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 225 VATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred EECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 0000000 00111233444554 68999999999854
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.11 E-value=0.073 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999883
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.08 E-value=0.073 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 446
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.07 E-value=0.18 Score=53.68 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCccccCCCce-EEEEEecCCCCH-HHHHHHHHHHhcCCc-----
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLA-RKLVNSTDVKGGFDC-RAWVCVTQEYTT-RDLLQKTIKSFQKPK----- 243 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~~-~~~l~~i~~~l~~~~----- 243 (718)
+.++.|..-. .-+-++|+|.+|+|||+|| ..+.|.. +-+. ++++-+.+.... .++.+.+...=....
T Consensus 151 raID~l~Pig-rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccc-cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 4455554322 1246799999999999995 5888742 2443 467778877543 344444433110000
Q ss_pred -ccchHHhhh----cCHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 244 -IEDLELMER----MTEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 244 -~~~~~~~~~----~~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..+.+.... ...-.+.+.++. +++.+||++||+..
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDLSK 265 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 000000000 011123333443 58999999999853
No 447
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.05 E-value=0.076 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468899999999999999999875
No 448
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.05 E-value=0.075 Score=52.00 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 449
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.03 E-value=0.084 Score=54.44 Aligned_cols=24 Identities=46% Similarity=0.531 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|..|+||||+++.++.-
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 569999999999999999999873
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.01 E-value=0.073 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|.|.|++|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 451
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.94 E-value=0.085 Score=53.53 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.9
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999983
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.91 E-value=0.11 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999986
No 453
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.89 E-value=0.08 Score=52.36 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999988
No 454
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.87 E-value=0.16 Score=53.71 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCC--CceEEEEEecCCCC-HHHHHHHHHH
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGG--FDCRAWVCVTQEYT-TRDLLQKTIK 237 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~~l~~i~~ 237 (718)
+.++.|..-. .-+-++|.|.+|+|||+|+.++.++....+. =+.++++-+.+... ..++..++..
T Consensus 141 r~ID~l~pig-rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 141 STIDGTNTLV-RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp HHHHTTSCCB-TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred Eeeeeeeccc-cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 3455554322 1236788999999999999999986443221 13567777777654 3445555443
No 455
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.86 E-value=0.11 Score=47.67 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 456
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.86 E-value=0.47 Score=50.84 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=34.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIK 237 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~ 237 (718)
-.++.|.|.+|+||||||..+..+..... -..++|++.. .+...+...++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHH
Confidence 35999999999999999999887532221 1246776644 345666666544
No 457
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.85 E-value=0.27 Score=47.40 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.8
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 458
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.85 E-value=0.88 Score=53.00 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=63.2
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCc---eEEEEEecCCC-------CHHH-----------HHHHHHHHhcCCc
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFD---CRAWVCVTQEY-------TTRD-----------LLQKTIKSFQKPK 243 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~~-------~~~~-----------~l~~i~~~l~~~~ 243 (718)
.+++|+|..|.|||||.+.+... .+.+ ++ ..-.+.+.+.. +..+ -..++++.++-..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~g-~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVDG-FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTD 539 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CSTT-CCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcCC-CccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCCh
Confidence 48999999999999999999842 1211 11 00012233221 1111 2233444443311
Q ss_pred ccchHHhhhcCHHHHH-HHHHHHhcCceEEEEEecCCCh---hhhhHHHhhCCCCCCCcEEEEEecchhhhhhc
Q 047642 244 IEDLELMERMTEEDLE-LHLYEFLEGRRYLVVVDDIWHK---SAWESLRRAFPDNGNGSRIVITTRNEPVAMIT 313 (718)
Q Consensus 244 ~~~~~~~~~~~~~~l~-~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gsriivTTR~~~v~~~~ 313 (718)
..........+..+.+ -.+-..|..++-+|+||.--+. ..-+.+...+.. .|..||++|.+...+...
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV 611 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence 0000002233333332 2345556677789999986532 222223322322 366788888887766543
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.85 E-value=0.075 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 460
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.84 E-value=0.08 Score=50.02 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=43.9
Q ss_pred EEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcc---cchHHhhhcCHHHHHHHH
Q 047642 186 VISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKI---EDLELMERMTEEDLELHL 262 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~---~~~~~~~~~~~~~l~~~l 262 (718)
+|.|.|++|+||+|.|+.+... |. ...++ .-+++++-+..-+.-.. .....-.....+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999999883 21 12222 34455544332111000 000001112334455667
Q ss_pred HHHhcCceEEEEEecCCC
Q 047642 263 YEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~ 280 (718)
.+.+....- +|||..-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 777765443 68898753
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.79 E-value=0.079 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.+++|+|+.|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999873
No 462
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.76 E-value=0.14 Score=50.13 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcC
Q 047642 173 LIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 173 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+..||....+....|.++|++|+|||.+|.++.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44444433233457999999999999999999983
No 463
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.73 E-value=0.078 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 464
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.71 E-value=0.29 Score=50.97 Aligned_cols=124 Identities=12% Similarity=0.037 Sum_probs=71.8
Q ss_pred hhccCCceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-
Q 047642 553 TLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ- 629 (718)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~- 629 (718)
..+.....|+.+.+..+- . . ++ ..+..+..|+.+.+..+ ++.++.. +.++.+|+.+.+.. .+..++..
T Consensus 211 ~~f~~~~~l~~i~~~~~~-~---~---i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~a 281 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV-T---T---LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLL 281 (379)
T ss_dssp TTTTTCSSCSEEECCTTC-C---E---ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTT
T ss_pred cccccccccceeeeccce-e---E---EccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccc
Confidence 345556666666665432 2 2 22 34566777777777654 6666543 45677788887754 46666553
Q ss_pred hccccccceeeec-c---cC-cccCCCccccccccceecc-ccchHHhcccCCCCeEEEeec
Q 047642 630 ISKLHQLRHLIAR-P---LG-HLQVSTLTNLQTLKYVNFQ-QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 630 i~~L~~L~~L~l~-~---~~-p~~~~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 685 (718)
|.++.+|+.+.+. . .+ ...+.++++|+.+.+-..- ......|.++++|+.+.+..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECCc
Confidence 6677778777762 1 12 2335566667666553221 223445667777777666544
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.70 E-value=0.095 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...++.+.|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.68 E-value=0.083 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.68 E-value=0.089 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.66 E-value=0.046 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=18.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.63 E-value=0.28 Score=46.45 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..|.|.|..|+||||+++.+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999884
No 470
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.60 E-value=0.14 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchHHHHHHHHhc
Q 047642 184 RFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45899999999999999999987
No 471
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.59 E-value=0.25 Score=53.07 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHH
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTR 229 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 229 (718)
++++.|..-. .-+.++|.|..|+|||+|++++.+. .+-+.++++-+.+.....
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev 268 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEM 268 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHH
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHH
Confidence 4566664322 1247899999999999999999874 233578888888887653
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.54 E-value=0.09 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 473
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.43 E-value=0.1 Score=51.34 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred cEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC-CCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 184 RFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ-EYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
-.+++|+|+.|+|||||++.+..- +...+...+++.-.. .+-.... ..+ +. .... .... ..+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~-q~~~---gl~~---~~l~~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSI---VN-QREV---GEDT---KSFADAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSE---EE-EEEB---TTTB---SCHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-cee---ee-HHHh---CCCH---HHHHHHH
Confidence 469999999999999999998873 211113334332110 1100000 000 00 0000 0000 1223456
Q ss_pred HHHhcCceEEEEEecCCChhhhhHHHhhCCCCCCCcEEEEEecchhhhh
Q 047642 263 YEFLEGRRYLVVVDDIWHKSAWESLRRAFPDNGNGSRIVITTRNEPVAM 311 (718)
Q Consensus 263 ~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gsriivTTR~~~v~~ 311 (718)
...|..++=+|++|+.-+.+....+.... ..|.-|++||.+..+..
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 66666677789999997655444333322 24667888888766443
No 474
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.40 E-value=0.11 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.-|+|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 475
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.39 E-value=0.11 Score=52.70 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=28.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEY 226 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 226 (718)
..++|+|+|-||+||||+|..+..- ....-..++-|......
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCC
Confidence 5689999999999999999887763 22222245556555443
No 476
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.36 E-value=0.17 Score=53.90 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=49.9
Q ss_pred EEEEEEecCCchHHHHH-HHHhcCccccCCCc-eEEEEEecCCCCH-HHHHHHHHHH--hcCC----cccchHHhhhc--
Q 047642 185 FVISILGMGGLGKTTLA-RKLVNSTDVKGGFD-CRAWVCVTQEYTT-RDLLQKTIKS--FQKP----KIEDLELMERM-- 253 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~l~~i~~~--l~~~----~~~~~~~~~~~-- 253 (718)
+-++|+|.+|+|||+|| ..+.|.. .-+ .++++-+.+.... .++.+.+... +... ...+.+.....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 46799999999999995 5888842 234 3577778776543 2333333221 0000 00000001111
Q ss_pred --CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 254 --TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 254 --~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..-...+.++. +++.+||++||+..
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 12234455555 58999999999854
No 477
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.34 E-value=0.17 Score=51.80 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHHHHHhc
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++-+.-.-....+++|+|.+|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433333467999999999999999999985
No 478
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.33 E-value=0.18 Score=62.84 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHhcCCcccchHHhhhcCHHHHHHHH
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSFQKPKIEDLELMERMTEEDLELHL 262 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 262 (718)
..+.|.|+|++|+|||+||.++... ...+=..++|+++...++... +..++..... +.-......++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~-l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDN-LLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTT-CEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchh-ceeecCChHHHHHHHH
Confidence 3569999999999999999999874 333334578888888877765 3344321100 0000111234444555
Q ss_pred HHHhc-CceEEEEEecCC
Q 047642 263 YEFLE-GRRYLVVVDDIW 279 (718)
Q Consensus 263 ~~~L~-~k~~LlVLDdv~ 279 (718)
+...+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 466799999994
No 479
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.32 E-value=0.11 Score=55.52 Aligned_cols=25 Identities=44% Similarity=0.694 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+++|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 3579999999999999999999873
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.29 E-value=0.1 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchHHHHHHHHhcC
Q 047642 183 QRFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999873
No 481
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.27 E-value=0.37 Score=51.41 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=55.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchHHHHH-HHHhcCccc----cCCCc-eEEEEEecCCCCH-HHHHHHHHHHhcCCc-
Q 047642 172 MLIKQLLKDEQQRFVISILGMGGLGKTTLA-RKLVNSTDV----KGGFD-CRAWVCVTQEYTT-RDLLQKTIKSFQKPK- 243 (718)
Q Consensus 172 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~~-~~~l~~i~~~l~~~~- 243 (718)
+.++.|..-. .-+-++|+|..|+|||+|| ..+.|.... ..+-+ .++++-+.+.... .++.+.+... +.-.
T Consensus 151 raID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~-g~m~~ 228 (510)
T 2ck3_A 151 KAVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA-DAMKY 228 (510)
T ss_dssp HHHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHT-TCGGG
T ss_pred eeeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhc-CCccc
Confidence 4555554432 1236799999999999994 577774321 12334 3678888877543 3444444331 1100
Q ss_pred ------ccchHHhhhc----CHHHHHHHHHHHhcCceEEEEEecCCC
Q 047642 244 ------IEDLELMERM----TEEDLELHLYEFLEGRRYLVVVDDIWH 280 (718)
Q Consensus 244 ------~~~~~~~~~~----~~~~l~~~l~~~L~~k~~LlVLDdv~~ 280 (718)
..+.+..... ..-...+.++. +++.+||++||+..
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsltr 273 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDLSK 273 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHH
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCHHH
Confidence 0000000000 11123333443 58999999999854
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.25 E-value=0.099 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999875
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.20 E-value=0.12 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-+.|.|.|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999873
No 484
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.17 E-value=0.1 Score=54.86 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999988
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.15 E-value=0.11 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.761 Sum_probs=20.1
Q ss_pred EEEEEecCCchHHHHHHHHhcC
Q 047642 186 VISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
-|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999875
No 486
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.14 E-value=0.13 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.14 E-value=0.18 Score=51.92 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.+++|+|+.|+|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999987
No 488
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.13 E-value=0.19 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchHHHHHHHHhc
Q 047642 182 QQRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 182 ~~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999999875
No 489
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.12 E-value=0.12 Score=51.88 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.6
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+++|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999874
No 490
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.09 E-value=0.11 Score=52.29 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=33.0
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecCCCCHHHHHHHHHHHh
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQEYTTRDLLQKTIKSF 239 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i~~~l 239 (718)
.+++|+|.+|+|||||++.+........ -..++|+... .....+...++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 4899999999999999999887422221 1135566543 24445555544443
No 491
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.09 E-value=0.11 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhc
Q 047642 185 FVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++.|+|.+|+||||||..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999998886
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.07 E-value=0.095 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchHHHHHHHHhc
Q 047642 183 QRFVISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 183 ~~~vi~I~G~gGiGKTtLA~~v~~ 206 (718)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356999999999999999999987
No 493
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.06 E-value=0.11 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.0
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
..+|+|.|+.|+||||+++.+.+.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.05 E-value=0.24 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcC
Q 047642 185 FVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
+.|+|-|.-|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999884
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.03 E-value=0.12 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.7
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
...|+|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 496
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.01 E-value=0.12 Score=48.16 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=73.0
Q ss_pred hhhhccCCceEEEEEecCC-cccccccccccchhhhhcccccEEeeccCCcc-----cccccccccCCCcEEEecCcccc
Q 047642 551 LQTLCSSLRFLRVLDLEDT-RIEHSGKVLRLTDSIGKLIHLRYFGFKCNSLV-----EFPRSIGNLQCLKTMVASGNSCW 624 (718)
Q Consensus 551 ~~~~~~~l~~L~~L~l~~~-~l~~~~~l~~~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~i~ 624 (718)
+...+.+-+.|+.|+|+++ .|... ....+-..+..-+.|+.|+|++|.|. .|-..+..-+.|++|+|++|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445566778999999986 66420 11113445666688999999999987 34445555678999999999876
Q ss_pred c-----cChhhccccccceeeecccCcccCCCccccccccceecc--ccchHHhcccCCCCeEEEeec
Q 047642 625 K-----LPSQISKLHQLRHLIARPLGHLQVSTLTNLQTLKYVNFQ--QWDAVDARNLINLQELEIREI 685 (718)
Q Consensus 625 ~-----lp~~i~~L~~L~~L~l~~~~p~~~~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~ 685 (718)
. +-..+..-..|++|++....... .... ..+...+..-+.|+.|+++.+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~------------ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSV------------LGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCC------------CCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcC------------cCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2 33334444456655542100000 0000 123445666677888888766
No 497
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.89 E-value=0.12 Score=51.16 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhc
Q 047642 186 VISILGMGGLGKTTLARKLVN 206 (718)
Q Consensus 186 vi~I~G~gGiGKTtLA~~v~~ 206 (718)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 498
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.88 E-value=0.72 Score=47.91 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=53.1
Q ss_pred hhccCCceEEEEEecCCcccccccccccc-hhhhhcccccEEeeccCCccccccc-ccccCCCcEEEecCccccccChh-
Q 047642 553 TLCSSLRFLRVLDLEDTRIEHSGKVLRLT-DSIGKLIHLRYFGFKCNSLVEFPRS-IGNLQCLKTMVASGNSCWKLPSQ- 629 (718)
Q Consensus 553 ~~~~~l~~L~~L~l~~~~l~~~~~l~~~p-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~- 629 (718)
..|..+..|+.+.+..+ ++ . +. ..+.++..|+.+.+.. .++.++.. +.++.+|+.+.+.++.++.++..
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~---~---I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT---S---IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC---E---ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred ccccCCccceEEEcCCC-cc---E---eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhh
Confidence 34555666666666543 33 2 22 3455566666666643 25555543 35566666666666666666543
Q ss_pred hccccccceeeec---ccC-cccCCCccccccccc
Q 047642 630 ISKLHQLRHLIAR---PLG-HLQVSTLTNLQTLKY 660 (718)
Q Consensus 630 i~~L~~L~~L~l~---~~~-p~~~~~l~~L~~L~~ 660 (718)
|.++.+|+.+.+. ..+ ...+.++++|+.+.+
T Consensus 306 F~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 5666666666651 111 223455566665554
No 499
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.87 E-value=0.14 Score=49.71 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=26.9
Q ss_pred EEEEEEecCCchHHHHHHHHhcCccccCCCceEEEEEecC
Q 047642 185 FVISILGMGGLGKTTLARKLVNSTDVKGGFDCRAWVCVTQ 224 (718)
Q Consensus 185 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 224 (718)
.++.|.|.+|+||||||..++.... ..-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 4899999999999999987765321 1223467776443
No 500
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.82 E-value=0.11 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.537 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchHHHHHHHHhcC
Q 047642 184 RFVISILGMGGLGKTTLARKLVNS 207 (718)
Q Consensus 184 ~~vi~I~G~gGiGKTtLA~~v~~~ 207 (718)
.--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999875
Done!