Query 047644
Match_columns 314
No_of_seqs 119 out of 1435
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 13:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 3.5E-23 7.6E-28 173.4 -5.4 239 21-283 98-350 (419)
2 KOG4341 F-box protein containi 99.5 5.3E-16 1.2E-20 135.8 -7.6 264 22-309 73-380 (483)
3 PF12937 F-box-like: F-box-lik 98.9 1.1E-09 2.4E-14 68.4 2.2 35 21-55 1-35 (47)
4 PF00646 F-box: F-box domain; 98.4 4.8E-08 1.1E-12 61.2 0.3 38 21-58 3-40 (48)
5 PLN00113 leucine-rich repeat r 98.4 5.3E-07 1.1E-11 92.4 6.7 82 124-208 93-175 (968)
6 KOG3207 Beta-tubulin folding c 98.3 5.3E-08 1.1E-12 86.7 -2.1 176 125-312 147-337 (505)
7 smart00256 FBOX A Receptor for 98.3 2.8E-07 6.1E-12 55.5 1.4 34 24-57 1-34 (41)
8 PLN00113 leucine-rich repeat r 98.2 1.5E-06 3.3E-11 89.0 6.0 82 124-207 164-246 (968)
9 KOG4341 F-box protein containi 98.2 5.3E-08 1.2E-12 86.2 -4.1 176 126-308 270-459 (483)
10 KOG2120 SCF ubiquitin ligase, 98.1 3.8E-07 8.3E-12 77.7 -2.1 149 123-275 233-391 (419)
11 PLN03210 Resistant to P. syrin 97.9 1.8E-05 4E-10 82.3 6.9 62 145-208 630-692 (1153)
12 cd00116 LRR_RI Leucine-rich re 97.9 4.2E-07 9.1E-12 80.9 -5.1 36 172-207 165-203 (319)
13 PLN03210 Resistant to P. syrin 97.8 2.5E-05 5.4E-10 81.3 6.2 56 125-182 658-714 (1153)
14 cd00116 LRR_RI Leucine-rich re 97.7 1.7E-06 3.7E-11 77.0 -4.9 182 124-313 81-290 (319)
15 KOG4194 Membrane glycoprotein 97.6 3.7E-06 7.9E-11 77.9 -3.0 60 248-313 363-428 (873)
16 KOG3207 Beta-tubulin folding c 97.6 8.7E-06 1.9E-10 72.9 -1.4 180 125-313 122-313 (505)
17 KOG1947 Leucine rich repeat pr 97.5 2.5E-06 5.5E-11 80.2 -6.9 172 124-303 188-389 (482)
18 PF07723 LRR_2: Leucine Rich R 97.5 0.00012 2.7E-09 39.0 2.5 25 173-197 1-26 (26)
19 KOG1947 Leucine rich repeat pr 97.4 1.8E-05 3.9E-10 74.4 -2.6 135 170-310 186-330 (482)
20 KOG3665 ZYG-1-like serine/thre 97.2 3.7E-05 8.1E-10 75.0 -2.0 61 149-209 122-185 (699)
21 KOG4194 Membrane glycoprotein 97.2 0.00024 5.2E-09 66.2 3.2 149 125-281 79-231 (873)
22 PF14580 LRR_9: Leucine-rich r 97.1 2.9E-05 6.2E-10 62.7 -3.1 80 125-209 20-100 (175)
23 KOG1909 Ran GTPase-activating 97.1 7.4E-05 1.6E-09 65.2 -1.5 221 83-313 19-282 (382)
24 PF14580 LRR_9: Leucine-rich r 96.9 3.3E-05 7E-10 62.3 -4.6 125 147-280 17-149 (175)
25 KOG1909 Ran GTPase-activating 96.9 0.00012 2.6E-09 63.9 -1.5 185 124-314 30-254 (382)
26 PF13855 LRR_8: Leucine rich r 96.5 0.00098 2.1E-08 43.7 0.9 57 150-207 2-59 (61)
27 KOG0618 Serine/threonine phosp 96.4 0.0003 6.6E-09 68.8 -2.6 107 147-263 381-489 (1081)
28 PRK15370 E3 ubiquitin-protein 96.4 0.002 4.4E-08 63.7 2.7 55 124-184 241-295 (754)
29 PRK15387 E3 ubiquitin-protein 96.4 0.007 1.5E-07 60.0 6.1 71 125-207 202-272 (788)
30 KOG0617 Ras suppressor protein 96.3 8.5E-05 1.8E-09 58.8 -6.1 68 140-209 47-114 (264)
31 KOG2982 Uncharacterized conser 96.3 0.00034 7.3E-09 60.1 -3.1 182 124-313 71-261 (418)
32 KOG3665 ZYG-1-like serine/thre 96.1 0.00056 1.2E-08 67.0 -2.9 150 121-277 119-281 (699)
33 PF13855 LRR_8: Leucine rich r 96.1 0.0024 5.3E-08 41.8 0.9 58 250-313 1-61 (61)
34 PRK15387 E3 ubiquitin-protein 96.0 0.016 3.6E-07 57.4 6.6 51 125-183 223-273 (788)
35 PRK15370 E3 ubiquitin-protein 95.9 0.011 2.4E-07 58.6 5.1 13 301-313 346-358 (754)
36 KOG2739 Leucine-rich acidic nu 95.9 0.00072 1.6E-08 57.0 -2.7 134 125-263 19-156 (260)
37 KOG2982 Uncharacterized conser 95.7 0.00079 1.7E-08 57.9 -3.3 137 170-314 69-212 (418)
38 KOG0281 Beta-TrCP (transducin 95.6 0.0031 6.6E-08 55.0 -0.1 37 18-54 72-112 (499)
39 KOG0444 Cytoskeletal regulator 95.3 0.00043 9.2E-09 65.3 -6.8 83 125-209 198-280 (1255)
40 KOG0444 Cytoskeletal regulator 94.9 0.00016 3.4E-09 68.1 -10.6 17 297-313 335-351 (1255)
41 KOG0618 Serine/threonine phosp 94.9 0.0017 3.7E-08 63.7 -4.1 128 171-312 358-487 (1081)
42 KOG1859 Leucine-rich repeat pr 94.9 0.0038 8.3E-08 60.0 -1.8 201 95-313 54-291 (1096)
43 PRK15386 type III secretion pr 94.6 0.05 1.1E-06 49.8 4.7 135 124-281 52-187 (426)
44 PF12799 LRR_4: Leucine Rich r 94.4 0.016 3.4E-07 35.2 0.6 33 173-207 2-34 (44)
45 KOG1259 Nischarin, modulator o 94.4 0.005 1.1E-07 53.2 -2.2 128 171-313 283-411 (490)
46 PF12799 LRR_4: Leucine Rich r 94.4 0.019 4.1E-07 34.8 1.0 37 149-185 1-37 (44)
47 PLN03215 ascorbic acid mannose 93.7 0.036 7.8E-07 50.0 1.7 37 21-57 4-41 (373)
48 KOG0617 Ras suppressor protein 93.7 0.0061 1.3E-07 48.5 -2.8 83 124-208 56-138 (264)
49 KOG1259 Nischarin, modulator o 93.1 0.078 1.7E-06 46.1 2.8 154 146-314 179-365 (490)
50 KOG2739 Leucine-rich acidic nu 92.9 0.02 4.3E-07 48.5 -1.0 101 175-281 21-126 (260)
51 PLN03150 hypothetical protein; 92.7 0.09 1.9E-06 51.5 3.1 106 150-260 419-525 (623)
52 KOG2997 F-box protein FBX9 [Ge 92.3 0.038 8.3E-07 47.9 -0.0 38 17-54 103-145 (366)
53 PLN03150 hypothetical protein; 91.6 0.17 3.6E-06 49.6 3.4 69 140-209 433-502 (623)
54 COG4886 Leucine-rich repeat (L 91.2 0.071 1.5E-06 49.0 0.5 78 149-230 116-194 (394)
55 COG4886 Leucine-rich repeat (L 90.8 0.11 2.4E-06 47.6 1.3 81 125-209 117-198 (394)
56 KOG3864 Uncharacterized conser 90.6 0.022 4.8E-07 46.5 -3.0 63 167-230 120-184 (221)
57 PRK15386 type III secretion pr 90.4 0.9 2E-05 41.8 6.7 116 123-260 71-187 (426)
58 KOG2123 Uncharacterized conser 90.4 0.0034 7.3E-08 53.7 -8.2 33 172-207 19-51 (388)
59 KOG0274 Cdc4 and related F-box 90.0 0.12 2.5E-06 49.5 0.7 39 16-54 103-141 (537)
60 smart00367 LRR_CC Leucine-rich 89.5 0.12 2.7E-06 27.2 0.3 21 172-192 2-23 (26)
61 KOG1644 U2-associated snRNP A' 87.8 0.63 1.4E-05 38.2 3.4 61 148-209 63-125 (233)
62 KOG1644 U2-associated snRNP A' 86.8 1.9 4.1E-05 35.6 5.5 104 150-262 43-152 (233)
63 KOG4658 Apoptotic ATPase [Sign 86.5 0.096 2.1E-06 53.1 -2.3 39 169-208 568-606 (889)
64 PF13013 F-box-like_2: F-box-l 85.3 0.38 8.3E-06 35.4 0.9 30 20-49 21-50 (109)
65 KOG4237 Extracellular matrix p 80.0 0.7 1.5E-05 41.8 0.6 61 247-313 271-334 (498)
66 PF13516 LRR_6: Leucine Rich r 76.8 0.37 8E-06 24.7 -1.3 14 172-185 2-15 (24)
67 KOG4658 Apoptotic ATPase [Sign 74.3 1 2.2E-05 45.8 0.1 82 124-207 571-652 (889)
68 PF13504 LRR_7: Leucine rich r 72.8 2.6 5.6E-05 19.6 1.2 14 301-314 1-14 (17)
69 COG5238 RNA1 Ran GTPase-activa 72.7 7.2 0.00016 33.9 4.7 43 167-209 87-132 (388)
70 KOG3864 Uncharacterized conser 72.6 0.33 7.2E-06 39.8 -3.1 80 178-261 107-187 (221)
71 KOG0472 Leucine-rich repeat pr 67.4 0.72 1.6E-05 41.9 -2.4 45 140-184 426-470 (565)
72 KOG2123 Uncharacterized conser 65.4 0.72 1.6E-05 39.9 -2.7 79 223-312 20-99 (388)
73 KOG4579 Leucine-rich repeat (L 65.1 0.75 1.6E-05 35.5 -2.4 76 147-229 51-127 (177)
74 PF00560 LRR_1: Leucine Rich R 63.6 7.2 0.00016 19.3 1.9 16 150-165 1-16 (22)
75 KOG0472 Leucine-rich repeat pr 63.0 0.57 1.2E-05 42.6 -3.9 101 124-230 183-283 (565)
76 PF09372 PRANC: PRANC domain; 61.7 6 0.00013 28.3 1.9 25 19-43 70-94 (97)
77 smart00369 LRR_TYP Leucine-ric 58.2 7.3 0.00016 20.0 1.4 15 300-314 1-15 (26)
78 smart00370 LRR Leucine-rich re 58.2 7.3 0.00016 20.0 1.4 15 300-314 1-15 (26)
79 KOG1859 Leucine-rich repeat pr 47.9 3.8 8.2E-05 40.4 -1.3 75 125-207 188-264 (1096)
80 KOG0531 Protein phosphatase 1, 47.6 8.2 0.00018 35.7 0.8 58 147-209 116-174 (414)
81 smart00368 LRR_RI Leucine rich 43.4 10 0.00022 20.2 0.4 21 172-192 2-22 (28)
82 KOG3926 F-box proteins [Amino 42.8 14 0.00031 31.8 1.4 50 19-68 200-256 (332)
83 KOG0531 Protein phosphatase 1, 41.4 7.5 0.00016 36.0 -0.5 81 124-209 118-198 (414)
84 PF01827 FTH: FTH domain; Int 40.6 1.1E+02 0.0024 23.0 6.1 118 81-204 2-124 (142)
85 KOG4408 Putative Mg2+ and Co2+ 38.7 7 0.00015 34.6 -1.0 39 21-59 8-46 (386)
86 COG5238 RNA1 Ran GTPase-activa 37.4 24 0.00053 30.7 2.0 179 98-284 32-255 (388)
87 smart00365 LRR_SD22 Leucine-ri 32.1 35 0.00075 17.9 1.4 15 300-314 1-15 (26)
88 PF05725 FNIP: FNIP Repeat; I 29.7 79 0.0017 18.7 2.9 29 250-278 12-41 (44)
89 PF08004 DUF1699: Protein of u 29.4 48 0.001 25.0 2.2 24 185-208 29-52 (131)
90 PF13306 LRR_5: Leucine rich r 26.0 70 0.0015 23.4 2.8 58 146-206 9-67 (129)
91 PF08387 FBD: FBD; InterPro: 24.8 43 0.00094 20.6 1.2 34 172-205 14-50 (51)
92 PF06881 Elongin_A: RNA polyme 24.5 82 0.0018 23.0 2.8 32 20-51 3-34 (109)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.5e-23 Score=173.36 Aligned_cols=239 Identities=17% Similarity=0.157 Sum_probs=166.1
Q ss_pred cCCCChHHHHHHhcCCChhhhhhhhccccccccccccce---eEEEecccccCCCccccccHHHHHHHHHHHHccCCCCC
Q 047644 21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVR---NLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSS 97 (314)
Q Consensus 21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 97 (314)
++.|||||+..||+.|+.+|+.+++.|||||.++-+... .++.......+ +...++ .+++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------------~~l~~l-~~rg--- 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------------DVLGRL-LSRG--- 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh-------------hHHHHH-HhCC---
Confidence 789999999999999999999999999999998754433 23333333332 223333 3332
Q ss_pred eeEEEEEeccCCCcchHHHHHHH--HHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCc
Q 047644 98 VEKFSLRCSYLRSLGMFDYWVSS--AISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRL 174 (314)
Q Consensus 98 l~~l~l~~~~~~~~~~~~~w~~~--~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L 174 (314)
|..|++--.....+ +...+ ....+++++||+....+..++...+..|.+|+.|+|.+....|.. ...+...+|
T Consensus 161 V~v~Rlar~~~~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 161 VIVFRLARSFMDQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred eEEEEcchhhhcCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 55555542211111 11222 234579999999988777788888889999999999997555432 244578999
Q ss_pred ceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEE--EecCCcceEEEEeeeeCCC-CCCCcceEEEEcC
Q 047644 175 KTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI--ISSATLKTFVLEVMYCSHS-SAPNQHTVTIVAP 250 (314)
Q Consensus 175 ~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~--i~~~~Lk~L~i~~~~c~~~-~~~~~~~l~~~~p 250 (314)
++|+|..|.. +..++.-++++|..|.+|+|++|....+. ..+. --+++|+.|+++ .|..+ .......+.-.||
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNls--G~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLS--GYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhh--hhHhhhhhhHHHHHHHhCC
Confidence 9999999987 99999999999999999999999762221 1122 256889999998 45432 2233455566889
Q ss_pred CccEEEeeccccc----ceeecCCCCceeEEEeEEec
Q 047644 251 NLEFLDITDDLAV----SYAVHQLPSLHKAVYYVMFS 283 (314)
Q Consensus 251 ~L~~L~l~~~~~~----~~~~~~~p~L~~l~l~~~~~ 283 (314)
+|..|+++++... ...+-+++.|+++.++-|+.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 9999998887543 22345677777777776643
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=5.3e-16 Score=135.85 Aligned_cols=264 Identities=16% Similarity=0.153 Sum_probs=160.7
Q ss_pred CCCChHHHHHHhcCCChhhhhhhhccccccccc------cccceeEEEecccccCCCccccccHHHHHHHHHHHHccCCC
Q 047644 22 SCLPDSILCQILSVPPTKDAVATSILSPRWKHA------WTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHP 95 (314)
Q Consensus 22 ~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 95 (314)
-.||.|++..|||+|.++.+.+++++|+-|..+ |..+..+.|..+... ..|.. +.++.+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------------~VV~~-~~~Rcg 137 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------------GVVEN-MISRCG 137 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------------cceeh-Hhhhhc
Confidence 359999999999999999999999999999876 443333333222111 12333 333444
Q ss_pred CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecccC---CCCcCC
Q 047644 96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTLP---PDGVCF 171 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~~---~~~~~~ 171 (314)
+.+++++++.+.......+..... ..+++++|.+..|.......-.. .-.|.+|+.|.|.+|...... ....+|
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 568999998887655543322211 23689999887775322222222 234899999999887543221 245689
Q ss_pred CCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCC----------CCcEEE------------------ecC
Q 047644 172 PRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANP----------ASNLII------------------SSA 222 (314)
Q Consensus 172 ~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~----------~~~~~i------------------~~~ 222 (314)
++|+.|++.+|.- ..++++.+..+|..|+++.+++|... .+ ...+.+ .+.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 9999999999866 77788888888888888888877651 11 001111 134
Q ss_pred CcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-----ceeecCCCCceeEEEeEEeccCCCCCCCChHHHh
Q 047644 223 TLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-----SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLL 297 (314)
Q Consensus 223 ~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll 297 (314)
.|+.|+.+ .|.+.++.....+.-++++|+.|.+.++.-. ...--+.+.|+++++.-+..- ....+.++-
T Consensus 295 ~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~----~d~tL~sls 368 (483)
T KOG4341|consen 295 ALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI----TDGTLASLS 368 (483)
T ss_pred Hhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee----hhhhHhhhc
Confidence 45555554 4555444434445556677777777766421 111223556666555443221 022366666
Q ss_pred hcCCCceEEEee
Q 047644 298 AGMTKTKCLTLS 309 (314)
Q Consensus 298 ~~~~~l~~L~l~ 309 (314)
.+|+.++.|.|+
T Consensus 369 ~~C~~lr~lsls 380 (483)
T KOG4341|consen 369 RNCPRLRVLSLS 380 (483)
T ss_pred cCCchhccCChh
Confidence 677777777766
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.87 E-value=1.1e-09 Score=68.41 Aligned_cols=35 Identities=37% Similarity=0.620 Sum_probs=31.0
Q ss_pred cCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644 21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW 55 (314)
Q Consensus 21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~ 55 (314)
|..||+|++.+||++|+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999865
No 4
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.43 E-value=4.8e-08 Score=61.21 Aligned_cols=38 Identities=42% Similarity=0.569 Sum_probs=31.7
Q ss_pred cCCCChHHHHHHhcCCChhhhhhhhccccccccccccc
Q 047644 21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSV 58 (314)
Q Consensus 21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~~ 58 (314)
+.+||+|++.+||++|+.+|.++++.|||+|+++....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 67899999999999999999999999999999876543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.38 E-value=5.3e-07 Score=92.36 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=39.2
Q ss_pred CCceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
..++.|+|+.+.. ...+|..++ .+++|++|+|+++.+.+.. ....+++|++|+|.++.++.. +..-+..+++|++|
T Consensus 93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence 3566666654432 123444444 4566666666555433221 223455556665555554221 22234455555555
Q ss_pred eeeeee
Q 047644 203 SLTVYF 208 (314)
Q Consensus 203 ~L~~c~ 208 (314)
+|.+|.
T Consensus 170 ~L~~n~ 175 (968)
T PLN00113 170 DLGGNV 175 (968)
T ss_pred ECccCc
Confidence 555553
No 6
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.3e-08 Score=86.70 Aligned_cols=176 Identities=18% Similarity=0.088 Sum_probs=113.6
Q ss_pred CceEEEEEec-CCCccccCCcccccCCeeEEEEcceeecccC--CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 125 NVREIEIDLR-DHERIPLPASIYRSITLEVLRLRSYFALTLP--PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 125 ~l~~L~l~~~-~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
++++|+|+-. -..+..+...+...++|+.|+|+...+.-.. .....+++||+|.|.+|.++..++.+++..||.||.
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 5666666542 1223333334445678888888776332221 133478999999999999999999999999999999
Q ss_pred eeeeeeeccCCCCCcEEE---ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee---------ecC
Q 047644 202 LSLTVYFTAANPASNLII---SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA---------VHQ 269 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i---~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~---------~~~ 269 (314)
|.|.+... . ..... ...+|+.|+++ -+...+.+........|+|+-|.+..+...++- ...
T Consensus 227 L~L~~N~~---~-~~~~~~~~i~~~L~~LdLs---~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 227 LYLEANEI---I-LIKATSTKILQTLQELDLS---NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hhhhcccc---c-ceecchhhhhhHHhhcccc---CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 99998843 2 11111 34689999997 444444444566778899999998876554221 234
Q ss_pred CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644 270 LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGV 312 (314)
Q Consensus 270 ~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~ 312 (314)
+|+|+.+.+.-....+. ...+-+..+.|++.|.+..|.
T Consensus 300 f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cccceeeecccCccccc-----cccchhhccchhhhhhccccc
Confidence 68888887776533211 233445566666666655543
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.29 E-value=2.8e-07 Score=55.49 Aligned_cols=34 Identities=44% Similarity=0.639 Sum_probs=31.5
Q ss_pred CChHHHHHHhcCCChhhhhhhhcccccccccccc
Q 047644 24 LPDSILCQILSVPPTKDAVATSILSPRWKHAWTS 57 (314)
Q Consensus 24 LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~ 57 (314)
||+|++.+||++|+.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.23 E-value=1.5e-06 Score=89.03 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=39.4
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|++..+... ..+|..+..+++|++|.|+++.... .|.....+++|+.|+|.+..+... +...+..+++|++|
T Consensus 164 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 241 (968)
T PLN00113 164 SSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCEE
Confidence 46777777655321 1344445555666666665553322 222334455555555555544221 22223444555555
Q ss_pred eeeee
Q 047644 203 SLTVY 207 (314)
Q Consensus 203 ~L~~c 207 (314)
++.+|
T Consensus 242 ~L~~n 246 (968)
T PLN00113 242 DLVYN 246 (968)
T ss_pred ECcCc
Confidence 55544
No 9
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=5.3e-08 Score=86.24 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=123.5
Q ss_pred ceEEEEEecCC-CccccCCcccccCCeeEEEEcceeecccC---CCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCcccc
Q 047644 126 VREIEIDLRDH-ERIPLPASIYRSITLEVLRLRSYFALTLP---PDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQ 200 (314)
Q Consensus 126 l~~L~l~~~~~-~~~~l~~~~~~c~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le 200 (314)
+.+++++-|.. +...+....+.|..|++|..++|...+.. +...++++|+.|-|.+|.- ++..+..+-.+||.||
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 45555444432 12223344456899999999998654321 2456789999999999975 9999999999999999
Q ss_pred ceeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceE---EEEcCCccEEEeeccccc----ceeecCCC
Q 047644 201 HLSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTV---TIVAPNLEFLDITDDLAV----SYAVHQLP 271 (314)
Q Consensus 201 ~L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l---~~~~p~L~~L~l~~~~~~----~~~~~~~p 271 (314)
.|.+..|....+ + ..+..+++.|+.|.++ .|...++.+...+ .-....|+.+.++.+... ...+..++
T Consensus 350 ~l~~e~~~~~~d~tL-~sls~~C~~lr~lsls--hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 350 RLDLEECGLITDGTL-ASLSRNCPRLRVLSLS--HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhcccccceehhhhH-hhhccCCchhccCChh--hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 999999965221 2 3456788999999998 8887766543332 335677888888888655 12355688
Q ss_pred CceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEe
Q 047644 272 SLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTL 308 (314)
Q Consensus 272 ~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l 308 (314)
.|+.+++.-+... ....+..+-..+||++...+
T Consensus 427 ~Leri~l~~~q~v----tk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 427 NLERIELIDCQDV----TKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeeechhhh----hhhhhHHHHhhCccceehhh
Confidence 8988776554221 14468889999999987654
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.8e-07 Score=77.73 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=102.1
Q ss_pred hCCceEEEEEecCCC-ccccCCcccccCCeeEEEEcceeecccC---CCCcCCCCcceEEeeeEEc--CCCcHHHHhcCC
Q 047644 123 SRNVREIEIDLRDHE-RIPLPASIYRSITLEVLRLRSYFALTLP---PDGVCFPRLKTFHLMLQQP--TNHLPHNLFSRC 196 (314)
Q Consensus 123 ~~~l~~L~l~~~~~~-~~~l~~~~~~c~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~--~~~~l~~ll~~c 196 (314)
.+++++++++.|... ...+...+.+|+.|..|+|+.|..+... ....--+.|+.|+|.|+.- .+..+..+...|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 358999999998643 3334445567999999999998554321 1223468999999999965 677899999999
Q ss_pred ccccceeeeeeeccCCCCCc-EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCC
Q 047644 197 PCLQHLSLTVYFTAANPASN-LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPS 272 (314)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~-~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~ 272 (314)
|.|-+|+|++|....+. -. .....+.|++|.++ .|....-. .....-+.|.|.||++.|+... ......+|.
T Consensus 313 p~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSls--RCY~i~p~-~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLS--RCYDIIPE-TLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSH 388 (419)
T ss_pred CceeeeccccccccCch-HHHHHHhcchheeeehh--hhcCCChH-HeeeeccCcceEEEEeccccCchHHHHHHHhCcc
Confidence 99999999999653221 11 11256789999998 77543211 1222348899999999999876 222344555
Q ss_pred cee
Q 047644 273 LHK 275 (314)
Q Consensus 273 L~~ 275 (314)
|+.
T Consensus 389 lki 391 (419)
T KOG2120|consen 389 LKI 391 (419)
T ss_pred ccc
Confidence 443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.92 E-value=1.8e-05 Score=82.26 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=27.4
Q ss_pred ccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 145 IYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 145 ~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
+..+++|+.|+|+++... ..| ....+++|++|.|.+|..- ..+..-+..++.|+.|++.+|.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCC
Confidence 334455555555544222 222 3334555555555554321 1122233445555555555553
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.89 E-value=4.2e-07 Score=80.86 Aligned_cols=36 Identities=19% Similarity=0.037 Sum_probs=14.8
Q ss_pred CCcceEEeeeEEcCCCcHHHHh---cCCccccceeeeee
Q 047644 172 PRLKTFHLMLQQPTNHLPHNLF---SRCPCLQHLSLTVY 207 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~ll---~~cp~Le~L~L~~c 207 (314)
++|++|+|.++.+++..+..+. ..++.|++|++.+|
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3444444444444333322222 22334444444444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.84 E-value=2.5e-05 Score=81.27 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeE
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQ 182 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~ 182 (314)
+++.|+|..|.. ...+|..+..+++|+.|.+++|... ..| ....+++|+.|+|.+|
T Consensus 658 ~Le~L~L~~c~~-L~~lp~si~~L~~L~~L~L~~c~~L~~Lp-~~i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 658 NLETLKLSDCSS-LVELPSSIQYLNKLEDLDMSRCENLEILP-TGINLKSLYRLNLSGC 714 (1153)
T ss_pred cccEEEecCCCC-ccccchhhhccCCCCEEeCCCCCCcCccC-CcCCCCCCCEEeCCCC
Confidence 444444443321 1234444444555555555555322 222 2224555555555544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.67 E-value=1.7e-06 Score=76.96 Aligned_cols=182 Identities=13% Similarity=0.017 Sum_probs=114.9
Q ss_pred CCceEEEEEecCCCccccCCccccc---CCeeEEEEcceeecccC-----CCCcCC-CCcceEEeeeEEcCCCc---HHH
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRS---ITLEVLRLRSYFALTLP-----PDGVCF-PRLKTFHLMLQQPTNHL---PHN 191 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c---~~L~~L~L~~~~~~~~~-----~~~~~~-~~L~~L~L~~~~~~~~~---l~~ 191 (314)
.++++|++..+.... ..+..+... ++|++|.++++...+.. .....+ ++|+.|+|.++.++... +..
T Consensus 81 ~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 589999998765431 122222222 45999999988554210 122345 89999999999986433 445
Q ss_pred HhcCCccccceeeeeeeccCCCCCc--EE---EecCCcceEEEEeeeeCCCCCCCc---ceEEEEcCCccEEEeeccccc
Q 047644 192 LFSRCPCLQHLSLTVYFTAANPASN--LI---ISSATLKTFVLEVMYCSHSSAPNQ---HTVTIVAPNLEFLDITDDLAV 263 (314)
Q Consensus 192 ll~~cp~Le~L~L~~c~~~~~~~~~--~~---i~~~~Lk~L~i~~~~c~~~~~~~~---~~l~~~~p~L~~L~l~~~~~~ 263 (314)
.+..|+.|++|++.+|.. .+. .. +. ...++|+.|+++ +|.. ...+. ....-..|+|++|+++++...
T Consensus 160 ~~~~~~~L~~L~l~~n~l-~~~-~~~~l~~~l~~~~~L~~L~L~--~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 160 ALRANRDLKELNLANNGI-GDA-GIRALAEGLKANCNLEVLDLN--NNGL-TDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHhCCCcCEEECcCCCC-chH-HHHHHHHHHHhCCCCCEEecc--CCcc-ChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 567888999999999865 321 11 11 134689999997 4532 21111 222346799999999997544
Q ss_pred ce---ee-----cCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 264 SY---AV-----HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 264 ~~---~~-----~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.. .+ ...+.|+++++..+..... ....+.+.+..+++++.|.++.|.+
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCC
Confidence 11 11 1237899999987632110 0234566777888999999999876
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.65 E-value=3.7e-06 Score=77.91 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=30.9
Q ss_pred EcCCccEEEeeccccc------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 248 VAPNLEFLDITDDLAV------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 248 ~~p~L~~L~l~~~~~~------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
...+|+.|++...... ...+..+|+|+++.+..... .....+-..++.++++|.|.+|.|
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql------k~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL------KSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee------eecchhhhccCcccceecCCCCcc
Confidence 3445555555443221 22344466666666654432 122344566677777777766654
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=8.7e-06 Score=72.88 Aligned_cols=180 Identities=15% Similarity=0.124 Sum_probs=99.8
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEc---CCCcHHHHhcCCcc
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQP---TNHLPHNLFSRCPC 198 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~---~~~~l~~ll~~cp~ 198 (314)
.++++.|+.+..........+-.|++++.|+|+..-+..+ ......+|+|+.|+|+.-.+ .+..... ..+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~ 198 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSH 198 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhh
Confidence 5666666665433222112344577777777776533222 12345677777777777655 2211122 4566
Q ss_pred ccceeeeeeecc-CCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEE-EcCCccEEEeeccccc----ceeecCCCC
Q 047644 199 LQHLSLTVYFTA-ANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI-VAPNLEFLDITDDLAV----SYAVHQLPS 272 (314)
Q Consensus 199 Le~L~L~~c~~~-~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~-~~p~L~~L~l~~~~~~----~~~~~~~p~ 272 (314)
|+.|.|..|..- .++ ..+....|+|+.|.+. .+.... .+.... -.-.|+.|++++.... .+..+.+|.
T Consensus 199 lK~L~l~~CGls~k~V-~~~~~~fPsl~~L~L~---~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDV-QWILLTFPSLEVLYLE---ANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHH-HHHHHhCCcHHHhhhh---cccccc--eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 677777777430 122 2334466777777775 221100 011111 2234777777776544 244677888
Q ss_pred ceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 273 LHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 273 L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
|..+.+..+....-.+.+.....-...+++++.|.+..|.+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 88888877644332222334455677899999999998876
No 17
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=2.5e-06 Score=80.16 Aligned_cols=172 Identities=19% Similarity=0.123 Sum_probs=108.8
Q ss_pred CCceEEEEEecCCCc-cccCCcccccCCeeEEEEcce-eeccc-----CCCCcCCCCcceEEeeeEE-cCCCcHHHHhcC
Q 047644 124 RNVREIEIDLRDHER-IPLPASIYRSITLEVLRLRSY-FALTL-----PPDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSR 195 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~-~~l~~~~~~c~~L~~L~L~~~-~~~~~-----~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~ 195 (314)
.+++++.+..+.... ..+......|+.|+.|.++++ ..... ......+++|+.|+|.++. ++|.++..+...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 466777776553222 123445567889999999873 22111 1144567889999999998 588889999889
Q ss_pred CccccceeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc---c-------
Q 047644 196 CPCLQHLSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA---V------- 263 (314)
Q Consensus 196 cp~Le~L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~---~------- 263 (314)
||.||+|.+..|...++. .. +.-.++.|++|++. +|...++.+...+...+|+|+.|.+.+... .
T Consensus 268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~--~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLS--GCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeee--cCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 999999998888742333 22 22366889999998 687665544555555677777766655432 0
Q ss_pred ----------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644 264 ----------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT 303 (314)
Q Consensus 264 ----------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l 303 (314)
......+|.++++.+..+. .. .......+.+|+++
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~----~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-IS----DLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhh-cc----CcchHHHhcCCccc
Confidence 1223446666666666553 21 22235677777777
No 18
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.46 E-value=0.00012 Score=38.97 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=22.9
Q ss_pred CcceEEeeeEEc-CCCcHHHHhcCCc
Q 047644 173 RLKTFHLMLQQP-TNHLPHNLFSRCP 197 (314)
Q Consensus 173 ~L~~L~L~~~~~-~~~~l~~ll~~cp 197 (314)
+||+|+|.++.+ +++.++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 19
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.36 E-value=1.8e-05 Score=74.37 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeee-eccCCCC---CcEEEecCCcceEEEEeeeeCCCCCCCcce
Q 047644 170 CFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVY-FTAANPA---SNLIISSATLKTFVLEVMYCSHSSAPNQHT 244 (314)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~---~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~ 244 (314)
.+++|+.|.+.++.. ++..+..+...||.|++|.+.+| ....... ..+...+++|++|++. +|...++.+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~--~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS--GCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh--hhhccCchhHHH
Confidence 378888888888865 66667788888888888888873 2211110 1223355778888887 666555555666
Q ss_pred EEEEcCCccEEEeeccccc-----ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeec
Q 047644 245 VTIVAPNLEFLDITDDLAV-----SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSA 310 (314)
Q Consensus 245 l~~~~p~L~~L~l~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~ 310 (314)
+.-.+|+|++|.+.++... ......+|.|+++++..+.... ...+..+..+|++++.|.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~----d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT----DSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch----HHHHHHHHHhCcchhhhhhhh
Confidence 6666888888887766632 1233457888888888653321 333566677788777766543
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=3.7e-05 Score=75.00 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCeeEEEEcceeec--ccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 149 ITLEVLRLRSYFAL--TLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 149 ~~L~~L~L~~~~~~--~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.+|++|++++...+ ++| ....-||+|++|.+.+..+..+++..+..++|+|..|+++++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI 185 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI 185 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence 46666666664221 222 13346888888888888885555888888888888888888755
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.22 E-value=0.00024 Score=66.25 Aligned_cols=149 Identities=13% Similarity=0.137 Sum_probs=73.4
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
.++.|+++.+...... +..++..++|+.+++........|.......+|+.|.|.+-.++.-.-+ -++.-|.||.|+|
T Consensus 79 ~t~~LdlsnNkl~~id-~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHID-FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCc-HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhh
Confidence 3445555554321111 1234556777777777665555563444455577777777766322212 2345577777777
Q ss_pred eeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEeE
Q 047644 205 TVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYV 280 (314)
Q Consensus 205 ~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~ 280 (314)
+.... ..+ ..-.. ...++|+|+++ .+..+.-+...+. ...+|.+|.++..... .-.+.++|.|+.+++..
T Consensus 157 SrN~i-s~i-~~~sfp~~~ni~~L~La---~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 157 SRNLI-SEI-PKPSFPAKVNIKKLNLA---SNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhchh-hcc-cCCCCCCCCCceEEeec---ccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 76543 222 11111 23567777775 3332222111111 1225666666654432 22345566666666655
Q ss_pred E
Q 047644 281 M 281 (314)
Q Consensus 281 ~ 281 (314)
.
T Consensus 231 N 231 (873)
T KOG4194|consen 231 N 231 (873)
T ss_pred c
Confidence 4
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.15 E-value=2.9e-05 Score=62.65 Aligned_cols=80 Identities=26% Similarity=0.227 Sum_probs=25.7
Q ss_pred CceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
++++|+|..+..... ..+. .+.+|+.|+|+++.....+ +...+++|++|.+.+-.++.-. ..+...||+|++|.
T Consensus 20 ~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred ccccccccccccccc---cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence 567777776643322 2233 3578899999888776665 6667888999988888874421 23445689999999
Q ss_pred eeeeec
Q 047644 204 LTVYFT 209 (314)
Q Consensus 204 L~~c~~ 209 (314)
+.+...
T Consensus 95 L~~N~I 100 (175)
T PF14580_consen 95 LSNNKI 100 (175)
T ss_dssp -TTS--
T ss_pred CcCCcC
Confidence 887755
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.07 E-value=7.4e-05 Score=65.23 Aligned_cols=221 Identities=15% Similarity=0.054 Sum_probs=107.1
Q ss_pred HHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEe--cCCCccccC-------CcccccCCe
Q 047644 83 EKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDL--RDHERIPLP-------ASIYRSITL 151 (314)
Q Consensus 83 ~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~--~~~~~~~l~-------~~~~~c~~L 151 (314)
..-|-..+..... +.++.++ ..+-+.-..+|+..+.+ +.+++.+++- ..+....+| ..+..|++|
T Consensus 19 ~~~v~~~~~~~~s--~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 19 EKDVEEELEPMDS--LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred hhhHHHHhcccCc--eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3444445544433 5555443 33344556788877765 3566666542 122222222 234456666
Q ss_pred eEEEEcceeecc-cC----CCCcCCCCcceEEeeeEEcCCCc------------HHHHhcCCccccceeeeeeeccCCCC
Q 047644 152 EVLRLRSYFALT-LP----PDGVCFPRLKTFHLMLQQPTNHL------------PHNLFSRCPCLQHLSLTVYFTAANPA 214 (314)
Q Consensus 152 ~~L~L~~~~~~~-~~----~~~~~~~~L~~L~L~~~~~~~~~------------l~~ll~~cp~Le~L~L~~c~~~~~~~ 214 (314)
+.|+|+.+.+.. .+ ....++..|++|.|.+|.++..+ ..+.+..-|.|+.+....... .+.
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~- 172 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENG- 172 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccc-
Confidence 666666653321 11 01123556666666666553221 112223344444444443332 111
Q ss_pred CcEEE-----ecCCcceEEEEeeeeCCCCCCCcce---EEEEcCCccEEEeeccccc-------ceeecCCCCceeEEEe
Q 047644 215 SNLII-----SSATLKTFVLEVMYCSHSSAPNQHT---VTIVAPNLEFLDITDDLAV-------SYAVHQLPSLHKAVYY 279 (314)
Q Consensus 215 ~~~~i-----~~~~Lk~L~i~~~~c~~~~~~~~~~---l~~~~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~ 279 (314)
+...+ .+++|+.+.+. -+-....+... -.-++|+|+.|++.+.... ...+...|.|+++.++
T Consensus 173 ga~~~A~~~~~~~~leevr~~---qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLS---QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred cHHHHHHHHHhccccceEEEe---cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 11111 34677777764 21111111111 1137888888888876543 2234556778888888
Q ss_pred EEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 280 VMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 280 ~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.|...... ...-+..+-.+.++++.|.+.+|.|
T Consensus 250 dcll~~~G-a~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 250 DCLLENEG-AIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred cccccccc-HHHHHHHHhccCCCCceeccCcchh
Confidence 77554211 0111334455677777777777654
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.94 E-value=3.3e-05 Score=62.33 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=38.0
Q ss_pred ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCc-EEEecCCcc
Q 047644 147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASN-LIISSATLK 225 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~-~~i~~~~Lk 225 (314)
.+..+++|+|.++...........+.+|+.|+|++..+.. +.. +..++.|++|.+.+..- ..+ .. +.-..|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I-~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRI-SSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCC-Ccc-ccchHHhCCcCC
Confidence 4557788888887555543233357888888888887732 222 34568888888887755 323 11 111357788
Q ss_pred eEEEEeeeeCCCCC-CCcceEEEEcCCccEEEeeccccc------ceeecCCCCceeEEEeE
Q 047644 226 TFVLEVMYCSHSSA-PNQHTVTIVAPNLEFLDITDDLAV------SYAVHQLPSLHKAVYYV 280 (314)
Q Consensus 226 ~L~i~~~~c~~~~~-~~~~~l~~~~p~L~~L~l~~~~~~------~~~~~~~p~L~~l~l~~ 280 (314)
.|.+. -+...+ .+...+ -.+|+|+.|++.|.+.. .+.+..+|+|+.+|-..
T Consensus 92 ~L~L~---~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLS---NNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-T---TS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECc---CCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88774 222111 111111 15677888888776543 23455677777766544
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.93 E-value=0.00012 Score=63.94 Aligned_cols=185 Identities=15% Similarity=0.127 Sum_probs=116.6
Q ss_pred CCceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeecc----cC-------CCCcCCCCcceEEeeeEEcC---C
Q 047644 124 RNVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALT----LP-------PDGVCFPRLKTFHLMLQQPT---N 186 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~----~~-------~~~~~~~~L~~L~L~~~~~~---~ 186 (314)
..+.+++|+.++.... .+...+.+-+.|+...++..+... .| +....+|.|+.|+|++-.++ .
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4789999988754321 222334445688888887753321 11 12346889999999999984 3
Q ss_pred CcHHHHhcCCccccceeeeeeeccCCCCC-c-----------EEE-ecCCcceEEEEeeeeCCCCCCCcc---eEEEEcC
Q 047644 187 HLPHNLFSRCPCLQHLSLTVYFTAANPAS-N-----------LII-SSATLKTFVLEVMYCSHSSAPNQH---TVTIVAP 250 (314)
Q Consensus 187 ~~l~~ll~~cp~Le~L~L~~c~~~~~~~~-~-----------~~i-~~~~Lk~L~i~~~~c~~~~~~~~~---~l~~~~p 250 (314)
..+..++++|..|++|.|.+|.. ...++ . -.+ ..+.|+.+... -+...+.+.. ...-..|
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~---rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICG---RNRLENGGATALAEAFQSHP 185 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEee---ccccccccHHHHHHHHHhcc
Confidence 56788999999999999999965 32100 1 111 44678877764 2222222211 1122458
Q ss_pred CccEEEeeccccc-------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 251 NLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 251 ~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+|+.+++.-.... ...+..+|.|+.+++.-.+-.... ...+...+..+++++.|.++++-|+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--s~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--SVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--HHHHHHHhcccchheeecccccccc
Confidence 9999888754322 234566889999988766332111 3346778888899999998887654
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.51 E-value=0.00098 Score=43.71 Aligned_cols=57 Identities=32% Similarity=0.408 Sum_probs=31.6
Q ss_pred CeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 150 TLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 150 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
+|++|.++++.....|. .+.++++|+.|+|.+..+..- -...+.++|+|++|+++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 56666666664444442 334566666666666655211 1234566677777666655
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.44 E-value=0.0003 Score=68.76 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=63.8
Q ss_pred ccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEE-EecCCc
Q 047644 147 RSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI-ISSATL 224 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-i~~~~L 224 (314)
..++|+.|.|++.....+|+ ....++.|++|+|+|-.+.. +..=+..|+.|+.|....... . .... ...+.|
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l-~---~fPe~~~l~qL 454 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQL-L---SFPELAQLPQL 454 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCce-e---echhhhhcCcc
Confidence 34677777776665544442 33456667777777766533 334455777777776655432 1 1111 256889
Q ss_pred ceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc
Q 047644 225 KTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV 263 (314)
Q Consensus 225 k~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~ 263 (314)
+.++++ |++....... ...-.|+|++|+++|....
T Consensus 455 ~~lDlS---~N~L~~~~l~-~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 455 KVLDLS---CNNLSEVTLP-EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred eEEecc---cchhhhhhhh-hhCCCcccceeeccCCccc
Confidence 999998 8775432111 1112289999999998754
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.39 E-value=0.002 Score=63.69 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=29.9
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP 184 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 184 (314)
.+++.|+|+.+... .+|..+. .+|+.|.|+++.+...|. . -+++|+.|+|.++.+
T Consensus 241 ~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~-~-l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 241 DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPE-N-LPEELRYLSVYDNSI 295 (754)
T ss_pred ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCcccc-c-cCCCCcEEECCCCcc
Confidence 35677777665432 3443322 467777776654444431 1 124677777766655
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.36 E-value=0.007 Score=59.96 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=35.3
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
+-..|+++.+.. ..+|..+. ++|+.|.+.++.+...|. ..++|++|+|.+..++. +.. ..+.|++|.+
T Consensus 202 ~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence 445555555432 24555433 356666666654444431 24666777766665431 111 1245555555
Q ss_pred eee
Q 047644 205 TVY 207 (314)
Q Consensus 205 ~~c 207 (314)
.++
T Consensus 270 s~N 272 (788)
T PRK15387 270 FSN 272 (788)
T ss_pred cCC
Confidence 554
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.26 E-value=8.5e-05 Score=58.76 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=43.5
Q ss_pred ccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 140 PLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 140 ~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
..|+.+-...+|+.|++.+....+.|....++|.|+.|++.--.+.. +..=+.++|.||.|+|.+...
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc
Confidence 45666667778888888777666666566677777777765333211 122245668888888777643
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.00034 Score=60.13 Aligned_cols=182 Identities=14% Similarity=0.072 Sum_probs=109.0
Q ss_pred CCceEEEEEecC-CCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRD-HERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~-~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
..|++++|.-+. .++.++...+-..+.|+.|+|+........ ..+....+|++|-|.+..++...+...+..-|.+.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 478888886543 234444444556689999999776443322 123567789999999999988888999999999999
Q ss_pred eeeeeeec---cCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc----eeecCCCCce
Q 047644 202 LSLTVYFT---AANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS----YAVHQLPSLH 274 (314)
Q Consensus 202 L~L~~c~~---~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~ 274 (314)
|+++.... ..|. ....-.++.++.|+.- .|....-.+...+.-..||+..+.+..++..+ -.+..+|++.
T Consensus 151 lHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~--~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQL--PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhccchhhhhcccc-ccccccchhhhhhhcC--CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 99887632 1111 2222255667777665 45432222234455567777777776654431 1123345444
Q ss_pred eEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 275 KAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 275 ~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
-+.++-... +.-+...-+.+++.+..|.+..|+|
T Consensus 228 ~LnL~~~~i-----dswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 228 CLNLGANNI-----DSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred hhhhccccc-----ccHHHHHHHcCCchhheeeccCCcc
Confidence 333332211 1112334567777777777777765
No 32
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.09 E-value=0.00056 Score=66.98 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=93.7
Q ss_pred HHhCCceEEEEEecCCCccccCCcccc-cCCeeEEEEcceeeccc--CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCc
Q 047644 121 AISRNVREIEIDLRDHERIPLPASIYR-SITLEVLRLRSYFALTL--PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCP 197 (314)
Q Consensus 121 ~~~~~l~~L~l~~~~~~~~~l~~~~~~-c~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp 197 (314)
....++++|++.....-....+..++. +|+|++|.+.+-.+... -....+||+|..|+++++.+++- .-+++-+
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk 195 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK 195 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence 344689999997654333333434444 69999999988644322 23567899999999999998552 4456779
Q ss_pred cccceeeeeeeccCCCCCcEE-EecCCcceEEEEeeeeCCCCCCC-----cceEEEEcCCccEEEeeccccc----ceee
Q 047644 198 CLQHLSLTVYFTAANPASNLI-ISSATLKTFVLEVMYCSHSSAPN-----QHTVTIVAPNLEFLDITDDLAV----SYAV 267 (314)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~~~-i~~~~Lk~L~i~~~~c~~~~~~~-----~~~l~~~~p~L~~L~l~~~~~~----~~~~ 267 (314)
+||.|.+.+-.. ........ .....|+.|+|+ ........ .-......|+|+.|+.+|.... ...+
T Consensus 196 nLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS---~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 196 NLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDIS---RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred cHHHHhccCCCC-CchhhHHHHhcccCCCeeecc---ccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 999999988755 21101111 256889999998 43322111 1122235789999999986544 2223
Q ss_pred cCCCCceeEE
Q 047644 268 HQLPSLHKAV 277 (314)
Q Consensus 268 ~~~p~L~~l~ 277 (314)
..-|+|+.+.
T Consensus 272 ~sH~~L~~i~ 281 (699)
T KOG3665|consen 272 NSHPNLQQIA 281 (699)
T ss_pred HhCccHhhhh
Confidence 4455555544
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.06 E-value=0.0024 Score=41.79 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=40.2
Q ss_pred CCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 250 PNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 250 p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
|+|++|.+++.... ...+.+++.|+.+++..+... ..-...+.++++++.|.+++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~------~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT------SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES------EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC------ccCHHHHcCCCCCCEEeCcCCcC
Confidence 67788888876443 234677888888888754221 11223588999999999998865
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.98 E-value=0.016 Score=57.42 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=26.4
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEE
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQ 183 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 183 (314)
+++.|.+..+..+ .+|. ..++|++|.|+++.+...|. ..++|+.|+|.+..
T Consensus 223 ~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 223 HITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 273 (788)
T ss_pred CCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccCcccC---cccccceeeccCCc
Confidence 5666666654322 2332 23667777777664444431 23455555554443
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.91 E-value=0.011 Score=58.58 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=10.5
Q ss_pred CCceEEEeecCCC
Q 047644 301 TKTKCLTLSAGVL 313 (314)
Q Consensus 301 ~~l~~L~l~~~~l 313 (314)
++++.|.++.|.|
T Consensus 346 ~sL~~L~Ls~N~L 358 (754)
T PRK15370 346 PELQVLDVSKNQI 358 (754)
T ss_pred CcccEEECCCCCC
Confidence 5888888888865
No 36
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.00072 Score=56.98 Aligned_cols=134 Identities=23% Similarity=0.187 Sum_probs=81.2
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~ 203 (314)
.+.++.++.+....-.+....-....|+.|++.++...... ..-.+|+||.|.++...+ ....+.-++..||+|.+|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 34555555443333333333333456677776666444433 555788999999988855 4556777888889999999
Q ss_pred eeeeeccCCCCCcEEE--ecCCcceEEEEeeeeCCCC-CCCcceEEEEcCCccEEEeeccccc
Q 047644 204 LTVYFTAANPASNLII--SSATLKTFVLEVMYCSHSS-APNQHTVTIVAPNLEFLDITDDLAV 263 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i--~~~~Lk~L~i~~~~c~~~~-~~~~~~l~~~~p~L~~L~l~~~~~~ 263 (314)
++.... .++ ..+.- .-++|++|++. +|.... ....+.+..-.|+|++|+..+....
T Consensus 98 ls~Nki-~~l-stl~pl~~l~nL~~Ldl~--n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 98 LSGNKI-KDL-STLRPLKELENLKSLDLF--NCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred ecCCcc-ccc-cccchhhhhcchhhhhcc--cCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 998765 333 22211 23467777776 565422 2223445567889999887765543
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.00079 Score=57.93 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEE
Q 047644 170 CFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIV 248 (314)
Q Consensus 170 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~ 248 (314)
.+..++.|.|.+-.+ +...+..|+.+.|+|+.|+|+......++ +.+.....+|+.|.+. .....-....+..-.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLN---gT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLN---GTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEc---CCCCChhhhhhhhhc
Confidence 467788888888888 66778888888899999998876553344 4444455677777774 222222223344445
Q ss_pred cCCccEEEeeccccc-----ceeecC-CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 249 APNLEFLDITDDLAV-----SYAVHQ-LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 249 ~p~L~~L~l~~~~~~-----~~~~~~-~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
.|.++.|.++..... .....+ -|.++.+.+.-|.... +.+..++.+-++|+..+.+..++|+
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~~~~l~r~Fpnv~sv~v~e~PlK 212 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLNKNKLSRIFPNVNSVFVCEGPLK 212 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHHHHhHHhhcccchheeeecCccc
Confidence 666666666554221 011111 1233333332221110 3356677888888888888888764
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.61 E-value=0.0031 Score=55.02 Aligned_cols=37 Identities=32% Similarity=0.479 Sum_probs=35.0
Q ss_pred CcccCCCC----hHHHHHHhcCCChhhhhhhhccccccccc
Q 047644 18 EDRISCLP----DSILCQILSVPPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 18 ~d~~~~LP----d~ll~~Ils~L~~~d~~~~~~vskrWr~l 54 (314)
.|.++.|| |++...||++|+..++..+-.|||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 48899999 99999999999999999999999999965
No 39
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.27 E-value=0.00043 Score=65.26 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
.++.|.++...++-..+|..+-...+|..++|+.......|+....+++|++|+|++-.++.-.. -+.---+||.|+|
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--TEGEWENLETLNL 275 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec--cHHHHhhhhhhcc
Confidence 45555566666677788888888888888888887777777677788999999999888744211 1112257788888
Q ss_pred eeeec
Q 047644 205 TVYFT 209 (314)
Q Consensus 205 ~~c~~ 209 (314)
+..+.
T Consensus 276 SrNQL 280 (1255)
T KOG0444|consen 276 SRNQL 280 (1255)
T ss_pred ccchh
Confidence 87754
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.94 E-value=0.00016 Score=68.07 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=11.0
Q ss_pred hhcCCCceEEEeecCCC
Q 047644 297 LAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 297 l~~~~~l~~L~l~~~~l 313 (314)
+..|..+++|.|+.|.|
T Consensus 335 lcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhhHHHHHhcccccce
Confidence 44677777777766643
No 41
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.93 E-value=0.0017 Score=63.71 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=59.6
Q ss_pred CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEc
Q 047644 171 FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249 (314)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~ 249 (314)
++.|+.|.|.+-.++|+.+.- +.+.++|+.|+|.+... ... ....+ .-+.|+.|.++ .+..+. .......+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL-~~f-pas~~~kle~LeeL~LS---GNkL~~--Lp~tva~~ 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL-NSF-PASKLRKLEELEELNLS---GNKLTT--LPDTVANL 429 (1081)
T ss_pred hHHHHHHHHhcCcccccchhh-hccccceeeeeeccccc-ccC-CHHHHhchHHhHHHhcc---cchhhh--hhHHHHhh
Confidence 344555555555555544433 34666666666666532 111 11111 22344555554 222111 11222345
Q ss_pred CCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644 250 PNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGV 312 (314)
Q Consensus 250 p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~ 312 (314)
+.|++|...+.... ...+...|.|+-+|++..-.. ...+...+.. ++++.|.+++|+
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~-----~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLS-----EVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccchhh-----hhhhhhhCCC-cccceeeccCCc
Confidence 55555555554332 234566777777777654221 1111111222 677888887776
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.91 E-value=0.0038 Score=60.00 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=110.5
Q ss_pred CCCeeEEEEEeccCCCcch---HHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcC-
Q 047644 95 PSSVEKFSLRCSYLRSLGM---FDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVC- 170 (314)
Q Consensus 95 ~~~l~~l~l~~~~~~~~~~---~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~- 170 (314)
+.+++.|+.......+... ++..++.. ...+.+.+--.+.....-|..|+...+|++|.|.+|....+- +...
T Consensus 54 g~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~l 130 (1096)
T KOG1859|consen 54 GAPVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK-GLQEL 130 (1096)
T ss_pred CCCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh-hhHHH
Confidence 4568888877665444322 22233332 234444443333333333778889999999999998432211 0000
Q ss_pred --------------------------------CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEE
Q 047644 171 --------------------------------FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI 218 (314)
Q Consensus 171 --------------------------------~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~ 218 (314)
+-.|.+-++..-.+ ..+..-+.-.|+||.|+|+.... .++ . --
T Consensus 131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~-~~v-~-~L 205 (1096)
T KOG1859|consen 131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKF-TKV-D-NL 205 (1096)
T ss_pred HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhh-hhh-H-HH
Confidence 11122222222211 01112222347888888887765 443 2 11
Q ss_pred EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHh
Q 047644 219 ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLL 297 (314)
Q Consensus 219 i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll 297 (314)
-.++.||+|+++ .+.... ...+....-.|+.|.+.+...... -+.++.+|+.+++..+...++ .=...|
T Consensus 206 r~l~~LkhLDls---yN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h-----seL~pL 275 (1096)
T KOG1859|consen 206 RRLPKLKHLDLS---YNCLRH--VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH-----SELEPL 275 (1096)
T ss_pred Hhcccccccccc---cchhcc--ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc-----hhhhHH
Confidence 267888888887 222111 222333333388888887654422 256788888898887755432 244567
Q ss_pred hcCCCceEEEeecCCC
Q 047644 298 AGMTKTKCLTLSAGVL 313 (314)
Q Consensus 298 ~~~~~l~~L~l~~~~l 313 (314)
..+..++.|.|.+|+|
T Consensus 276 wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 276 WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 7888888888888875
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.64 E-value=0.05 Score=49.78 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
+++.+|+++.|. ...+|. --.+|+.|.+++|......+... .++|+.|.+.+|.. +..+ -+.|+.|.
T Consensus 52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~----L~sL---P~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPE----ISGL---PESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccc----cccc---ccccceEE
Confidence 578888888773 233341 12468888888874432211111 25788888887732 1111 24577777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCC-CCceeEEEeEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQL-PSLHKAVYYVM 281 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~-p~L~~l~l~~~ 281 (314)
+..... ..+..--++|+.|.+. .+...... ..-..-.++|++|.+.++.... ....+ ++|+.++++..
T Consensus 119 L~~n~~-----~~L~~LPssLk~L~I~--~~n~~~~~--~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSAT-----DSIKNVPNGLTSLSIN--SYNPENQA--RIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE 187 (426)
T ss_pred eCCCCC-----cccccCcchHhheecc--cccccccc--ccccccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence 753221 1222223467887773 11111000 0001234789999999876432 11223 47888887653
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.39 E-value=0.016 Score=35.22 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=12.9
Q ss_pred CcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 173 RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 173 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
+|++|+|.+..+++ +...+..||.|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 34444444444332 3333344444444444444
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.37 E-value=0.005 Score=53.21 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=73.7
Q ss_pred CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC
Q 047644 171 FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP 250 (314)
Q Consensus 171 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p 250 (314)
+..|++|.|++-.++. +..-+.-.|.++.|++++... ..+ .. --..++|..|+++ .+.. .....+....-
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i-~~v-~n-La~L~~L~~LDLS---~N~L--s~~~Gwh~KLG 352 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRI-RTV-QN-LAELPQLQLLDLS---GNLL--AECVGWHLKLG 352 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEeccccce-eee-hh-hhhcccceEeecc---cchh--HhhhhhHhhhc
Confidence 5677788887776622 222233448888888887643 111 11 1134678888876 2211 11234455667
Q ss_pred CccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 251 NLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 251 ~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
|+++|.+.+..... .-++.+-+|..+++.-.... ...-.+-+.++|.+++|.+.+|+|
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie-----~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE-----ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccchh-----hHHHhcccccccHHHHHhhcCCCc
Confidence 77888877765432 22455666666666543221 222445677888888888888876
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.36 E-value=0.019 Score=34.84 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcC
Q 047644 149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPT 185 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 185 (314)
++|++|.++++...+.|+....+++|+.|+|.+..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4799999999988787734789999999999998874
No 47
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.66 E-value=0.036 Score=50.00 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=33.4
Q ss_pred cCCCChHHHHHHhcCCC-hhhhhhhhcccccccccccc
Q 047644 21 ISCLPDSILCQILSVPP-TKDAVATSILSPRWKHAWTS 57 (314)
Q Consensus 21 ~~~LPd~ll~~Ils~L~-~~d~~~~~~vskrWr~l~~~ 57 (314)
+++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999997 78999999999999986543
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.65 E-value=0.0061 Score=48.48 Aligned_cols=83 Identities=20% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.+++.|.+.... ...+|..+++.++|+.|++.-......|.++++||.|+.|.|.+-.+++..+..-+-....|.-|.
T Consensus 56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 477777777664 457899999999999999976666677779999999999999998886655543333344555555
Q ss_pred eeeee
Q 047644 204 LTVYF 208 (314)
Q Consensus 204 L~~c~ 208 (314)
|++..
T Consensus 134 l~dnd 138 (264)
T KOG0617|consen 134 LGDND 138 (264)
T ss_pred hcCCC
Confidence 55543
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.10 E-value=0.078 Score=46.08 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=81.2
Q ss_pred cccCCeeEEEEcceee-c---cc-CC----CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCC---
Q 047644 146 YRSITLEVLRLRSYFA-L---TL-PP----DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANP--- 213 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~-~---~~-~~----~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~--- 213 (314)
--|..|+.|.+++.-- + .. |. ....|.+|+++.++.|. ...+..+...=|.|..+.+.+... .+.
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~-~~~~~l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTI-QDVPSL 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccc-cccccc
Confidence 3467888888877411 0 00 10 11247889998888876 445666777789999988887654 111
Q ss_pred -----------------CCcEEEec---CCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCC
Q 047644 214 -----------------ASNLIISS---ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPS 272 (314)
Q Consensus 214 -----------------~~~~~i~~---~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~ 272 (314)
.+...... ..|..|+++ .+. +.....-.--+|.++.|+++-.....+ .+..+++
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS---~N~--I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~ 330 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLS---GNL--ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQ 330 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhcccc---ccc--hhhhhhhhhhccceeEEeccccceeeehhhhhccc
Confidence 00111111 245555554 111 111112222456666666665433211 1445667
Q ss_pred ceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 273 LHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 273 L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
|.+++++..... .+..+-..+-|+|+|.+..|-||
T Consensus 331 L~~LDLS~N~Ls-------~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-------ECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ceEeecccchhH-------hhhhhHhhhcCEeeeehhhhhHh
Confidence 777777655322 12233345566777777666554
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.91 E-value=0.02 Score=48.49 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=48.1
Q ss_pred ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCC-CCCCCcceEEEEcCCcc
Q 047644 175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSH-SSAPNQHTVTIVAPNLE 253 (314)
Q Consensus 175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~-~~~~~~~~l~~~~p~L~ 253 (314)
+++.|..+.-....+..+....-.|+.|.+.+|.. +.. .-.-..++||.|.++ |+. ....++..+...+|+|+
T Consensus 21 ~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gl-tt~--~~~P~Lp~LkkL~ls---dn~~~~~~~l~vl~e~~P~l~ 94 (260)
T KOG2739|consen 21 DELFLDNARSGAGKLGGLTDEFVELELLSVINVGL-TTL--TNFPKLPKLKKLELS---DNYRRVSGGLEVLAEKAPNLK 94 (260)
T ss_pred hhhhcchhhhcCCCcccccccccchhhhhhhccce-eec--ccCCCcchhhhhccc---CCcccccccceehhhhCCcee
Confidence 34444444333333444444555555555555533 111 001133566666665 442 22233445555667777
Q ss_pred EEEeecccccce----eecCCCCceeEEEeEE
Q 047644 254 FLDITDDLAVSY----AVHQLPSLHKAVYYVM 281 (314)
Q Consensus 254 ~L~l~~~~~~~~----~~~~~p~L~~l~l~~~ 281 (314)
+|+++|.....+ .+..+++|..+++..+
T Consensus 95 ~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 95 VLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred EEeecCCccccccccchhhhhcchhhhhcccC
Confidence 777777654411 1233444555555554
No 51
>PLN03150 hypothetical protein; Provisional
Probab=92.74 E-value=0.09 Score=51.46 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=58.6
Q ss_pred CeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEE
Q 047644 150 TLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFV 228 (314)
Q Consensus 150 ~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~ 228 (314)
.++.|.|+++.... .|.....+++|+.|+|.+..+.. .+...+..++.|+.|+|+++.. .+.-...--..++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCCEEE
Confidence 36777777764432 23344567888888888877632 2444567788888888888755 221011111456788888
Q ss_pred EEeeeeCCCCCCCcceEEEEcCCccEEEeecc
Q 047644 229 LEVMYCSHSSAPNQHTVTIVAPNLEFLDITDD 260 (314)
Q Consensus 229 i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~ 260 (314)
++ .+.....-+..+.-...++..+.+.+.
T Consensus 497 Ls---~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LN---GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred Cc---CCcccccCChHHhhccccCceEEecCC
Confidence 76 322222222222222234556666654
No 52
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.31 E-value=0.038 Score=47.95 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=32.1
Q ss_pred CCcccCCCChHHHHHHhcC-----CChhhhhhhhccccccccc
Q 047644 17 SEDRISCLPDSILCQILSV-----PPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 17 ~~d~~~~LPd~ll~~Ils~-----L~~~d~~~~~~vskrWr~l 54 (314)
..+.|..||||+|..||.. |+.+++.+++.|||.|...
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 4466889999999999864 5579999999999999853
No 53
>PLN03150 hypothetical protein; Provisional
Probab=91.55 E-value=0.17 Score=49.62 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred ccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 140 PLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 140 ~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.+|..+..+++|+.|.|+++.+. ..|.....+++|+.|+|.+..++.. +..-+..+++|+.|+|+++..
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence 34445555667777777766443 3333455667777777777666322 344456677777777776643
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.25 E-value=0.071 Score=48.97 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=43.9
Q ss_pred CCeeEEEEcceeecccCCCCcCCC-CcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPPDGVCFP-RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
+.+..|.+.+....+.+.....+. +|+.|++.+-.+.. +..-+..+|.|+.|.+.++.. .++ .......+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l-~~l-~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDL-SDL-PKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchh-hhh-hhhhhhhhhhhhe
Confidence 556777776665555552333342 67777776666422 113356777777777777765 333 2222255666666
Q ss_pred EEE
Q 047644 228 VLE 230 (314)
Q Consensus 228 ~i~ 230 (314)
.++
T Consensus 192 ~ls 194 (394)
T COG4886 192 DLS 194 (394)
T ss_pred ecc
Confidence 664
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.79 E-value=0.11 Score=47.64 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=51.0
Q ss_pred CceEEEEEecCCCccccCCcccccC-CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSI-TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.+..+++.... ...++......+ +|+.|.+++....+.|.....+++|+.|.+....+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 45555555443 334455444453 7888888777665554355678888888888887644 333333667888888
Q ss_pred eeeeec
Q 047644 204 LTVYFT 209 (314)
Q Consensus 204 L~~c~~ 209 (314)
+++...
T Consensus 193 ls~N~i 198 (394)
T COG4886 193 LSGNKI 198 (394)
T ss_pred ccCCcc
Confidence 887754
No 56
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=0.022 Score=46.46 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=41.2
Q ss_pred CCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEE-EecCCcceEEEE
Q 047644 167 DGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI-ISSATLKTFVLE 230 (314)
Q Consensus 167 ~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-i~~~~Lk~L~i~ 230 (314)
....++.++.|.|.+|.. +|..+..+-.-.|+||.|+|++|...++- +.-. ...++|+.|.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhc
Confidence 334567778888888866 88888888888888888888888653321 1111 134566666653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.39 E-value=0.9 Score=41.80 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=64.9
Q ss_pred hCCceEEEEEecCCCccccCCcccccCCeeEEEEccee-ecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 123 SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYF-ALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 123 ~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
..++++|.+..|..- ..+|..+ .++|+.|.+++|. ....| ++|+.|.|.... ...+-.--+.|++
T Consensus 71 P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~-----~~~L~~LPssLk~ 136 (426)
T PRK15386 71 PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSA-----TDSIKNVPNGLTS 136 (426)
T ss_pred CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccccc------cccceEEeCCCC-----CcccccCcchHhh
Confidence 457999999876431 2333322 3689999999883 33343 568888865322 1122223357888
Q ss_pred eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecc
Q 047644 202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDD 260 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~ 260 (314)
|.+.++...... ..-..-.++|+.|.+. +|..... +. .-.++|++|.++..
T Consensus 137 L~I~~~n~~~~~-~lp~~LPsSLk~L~Is--~c~~i~L--P~---~LP~SLk~L~ls~n 187 (426)
T PRK15386 137 LSINSYNPENQA-RIDNLISPSLKTLSLT--GCSNIIL--PE---KLPESLQSITLHIE 187 (426)
T ss_pred eecccccccccc-ccccccCCcccEEEec--CCCcccC--cc---cccccCcEEEeccc
Confidence 888654320000 0011123689999997 5653211 11 12367888888654
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=0.0034 Score=53.67 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=15.3
Q ss_pred CCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 172 PRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
.+.+.|++++|.++| ..|....|.||.|.|+..
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvN 51 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVN 51 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeecc
Confidence 344455555555444 222334455555555544
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.95 E-value=0.12 Score=49.49 Aligned_cols=39 Identities=28% Similarity=0.472 Sum_probs=36.3
Q ss_pred CCCcccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644 16 GSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 16 ~~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l 54 (314)
...|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 356999999999999999999999999999999999865
No 60
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.50 E-value=0.12 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=9.8
Q ss_pred CCcceEEeeeEEc-CCCcHHHH
Q 047644 172 PRLKTFHLMLQQP-TNHLPHNL 192 (314)
Q Consensus 172 ~~L~~L~L~~~~~-~~~~l~~l 192 (314)
|+|++|+|.+|.- +|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555532 44444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=87.83 E-value=0.63 Score=38.24 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=38.2
Q ss_pred cCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeec
Q 047644 148 SITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 148 c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.+.|..|-|.+......- .....+|+|+.|.|.+-.+ .-+++.. +..||.|++|.+.+...
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence 456777777766444332 1344677788888877766 4444554 35778888887776543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=86.77 E-value=1.9 Score=35.55 Aligned_cols=104 Identities=21% Similarity=0.147 Sum_probs=63.8
Q ss_pred CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcC--CCcHHHHhcCCccccceeeeeeec--cCCCCCcEEEecCCcc
Q 047644 150 TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPT--NHLPHNLFSRCPCLQHLSLTVYFT--AANPASNLIISSATLK 225 (314)
Q Consensus 150 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~ll~~cp~Le~L~L~~c~~--~~~~~~~~~i~~~~Lk 225 (314)
....+.|+.......+ ....+++|++|-|.+-.++ +..+.. -.|+|..|.|.+... ..++ .--..+|+|+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDL--DPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhc--chhccCCccc
Confidence 3344555554333333 5557888999999888773 333444 448899999988643 1222 2234788999
Q ss_pred eEEEEeeeeCCCCC-CCc-ceEEEEcCCccEEEeecccc
Q 047644 226 TFVLEVMYCSHSSA-PNQ-HTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 226 ~L~i~~~~c~~~~~-~~~-~~l~~~~p~L~~L~l~~~~~ 262 (314)
.|.+. -+..+. .+. ..+....|+|+.|++.+...
T Consensus 117 ~Ltll---~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 117 YLTLL---GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeeec---CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 99885 333222 112 23444779999999887543
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.55 E-value=0.096 Score=53.05 Aligned_cols=39 Identities=15% Similarity=0.052 Sum_probs=18.1
Q ss_pred cCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 169 VCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 169 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
..+|.|+.|+|+++. +-..+..-++..-+|+.|+++++.
T Consensus 568 ~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred hhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC
Confidence 345555555555422 122233334444555555555543
No 64
>PF13013 F-box-like_2: F-box-like domain
Probab=85.34 E-value=0.38 Score=35.40 Aligned_cols=30 Identities=20% Similarity=0.037 Sum_probs=27.2
Q ss_pred ccCCCChHHHHHHhcCCChhhhhhhhcccc
Q 047644 20 RISCLPDSILCQILSVPPTKDAVATSILSP 49 (314)
Q Consensus 20 ~~~~LPd~ll~~Ils~L~~~d~~~~~~vsk 49 (314)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999988888887
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=80.00 E-value=0.7 Score=41.84 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=43.0
Q ss_pred EEcCCccEEEeecccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 247 IVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 247 ~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
-..|+|+.|++++..... -.+.++..++++.++-.... ..-...+.+++++++|+|++|.|
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~------~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE------FVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH------HHHHHhhhccccceeeeecCCee
Confidence 356788888888765542 34566777777777665332 12345788999999999999986
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.76 E-value=0.37 Score=24.68 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=5.3
Q ss_pred CCcceEEeeeEEcC
Q 047644 172 PRLKTFHLMLQQPT 185 (314)
Q Consensus 172 ~~L~~L~L~~~~~~ 185 (314)
++|++|+|.++.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444443
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=74.26 E-value=1 Score=45.84 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
+.++.||++.+. ....+|..++..-+|++|+|+.......|.+...+..|.+|++..+..-. .+..+....+.|+.|.
T Consensus 571 ~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLR 648 (889)
T ss_pred cceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEEE
Confidence 356666666532 34466777777777777777666555555444455555555555443210 1123333344555555
Q ss_pred eeee
Q 047644 204 LTVY 207 (314)
Q Consensus 204 L~~c 207 (314)
+-.-
T Consensus 649 l~~s 652 (889)
T KOG4658|consen 649 LPRS 652 (889)
T ss_pred eecc
Confidence 4443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=72.78 E-value=2.6 Score=19.64 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=8.7
Q ss_pred CCceEEEeecCCCC
Q 047644 301 TKTKCLTLSAGVLH 314 (314)
Q Consensus 301 ~~l~~L~l~~~~l~ 314 (314)
++++.|.|+.|.|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 57888888888764
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=72.70 E-value=7.2 Score=33.86 Aligned_cols=43 Identities=23% Similarity=0.097 Sum_probs=36.5
Q ss_pred CCcCCCCcceEEeeeEEcC---CCcHHHHhcCCccccceeeeeeec
Q 047644 167 DGVCFPRLKTFHLMLQQPT---NHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 167 ~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
....||+|++.+|+.-.|+ ...+..++++...|++|.+.+|..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 4567999999999999883 456788999999999999999965
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.62 E-value=0.33 Score=39.77 Aligned_cols=80 Identities=15% Similarity=0.020 Sum_probs=48.2
Q ss_pred EeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCC-CcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEE
Q 047644 178 HLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLD 256 (314)
Q Consensus 178 ~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~ 256 (314)
.=+++.+.-++++++ .+++.|+.|.+.+|..++|.. ..+.--+++|+.|+|+ .|...++.+.. .....+||+.|.
T Consensus 107 DAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~ls--gC~rIT~~GL~-~L~~lknLr~L~ 182 (221)
T KOG3864|consen 107 DASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLS--GCPRITDGGLA-CLLKLKNLRRLH 182 (221)
T ss_pred ecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeecc--CCCeechhHHH-HHHHhhhhHHHH
Confidence 333444444456664 699999999999997744320 1222256777777777 67665554322 223556777776
Q ss_pred eeccc
Q 047644 257 ITDDL 261 (314)
Q Consensus 257 l~~~~ 261 (314)
+.+..
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66544
No 71
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.38 E-value=0.72 Score=41.94 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=33.9
Q ss_pred ccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc
Q 047644 140 PLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP 184 (314)
Q Consensus 140 ~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 184 (314)
..|..++..++|..|+|++....+.|...+++-.|++|+|+.-+|
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc
Confidence 344556667888888888887777776667777788888877765
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.44 E-value=0.72 Score=39.88 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=44.9
Q ss_pred CcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCC
Q 047644 223 TLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301 (314)
Q Consensus 223 ~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~ 301 (314)
+.|+|+.| +|.-.. -++-..+|.|+.|.++-.... ...+..+..|++++|.-.... .-+=..-|++++
T Consensus 20 ~vkKLNcw--g~~L~D----Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-----sldEL~YLknlp 88 (388)
T KOG2123|consen 20 NVKKLNCW--GCGLDD----ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-----SLDELEYLKNLP 88 (388)
T ss_pred Hhhhhccc--CCCccH----HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-----cHHHHHHHhcCc
Confidence 45666666 453211 133346677777777655433 123456666777766554322 222334578888
Q ss_pred CceEEEeecCC
Q 047644 302 KTKCLTLSAGV 312 (314)
Q Consensus 302 ~l~~L~l~~~~ 312 (314)
+++.|-|..|+
T Consensus 89 sLr~LWL~ENP 99 (388)
T KOG2123|consen 89 SLRTLWLDENP 99 (388)
T ss_pred hhhhHhhccCC
Confidence 88888777664
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=65.15 E-value=0.75 Score=35.55 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=49.4
Q ss_pred ccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcc
Q 047644 147 RSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLK 225 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk 225 (314)
.-..|+..+|++..+.++|+ ...-||-+++|+|.+-.+.+--.+ ++..|+|+.|++.+... . ....+-.+ |+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l---~-~~p~vi~~-L~ 123 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL---N-AEPRVIAP-LI 123 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc---c-cchHHHHH-HH
Confidence 34567777777776666663 334677888888888887553333 67889999999888754 1 23344444 55
Q ss_pred eEEE
Q 047644 226 TFVL 229 (314)
Q Consensus 226 ~L~i 229 (314)
+|+.
T Consensus 124 ~l~~ 127 (177)
T KOG4579|consen 124 KLDM 127 (177)
T ss_pred hHHH
Confidence 5554
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=63.58 E-value=7.2 Score=19.33 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=10.2
Q ss_pred CeeEEEEcceeecccC
Q 047644 150 TLEVLRLRSYFALTLP 165 (314)
Q Consensus 150 ~L~~L~L~~~~~~~~~ 165 (314)
+|++|+|++|.+...|
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4677777777555444
No 75
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.01 E-value=0.57 Score=42.57 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
+.+++++..-. .-..+|+.+....+|..|.|........| .+.+|..|++|+...-.+.-- -..+.++-++|-.|+
T Consensus 183 ~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhh-HHHHhcccccceeee
Confidence 34555544322 23355666666666666666665444455 566666666666655544110 123344556666666
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLE 230 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~ 230 (314)
|.+... ..+ ..-.+-..+|.+|+++
T Consensus 259 LRdNkl-ke~-Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 259 LRDNKL-KEV-PDEICLLRSLERLDLS 283 (565)
T ss_pred cccccc-ccC-chHHHHhhhhhhhccc
Confidence 666533 211 1111123456666665
No 76
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=61.69 E-value=6 Score=28.34 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.5
Q ss_pred cccCCCChHHHHHHhcCCChhhhhh
Q 047644 19 DRISCLPDSILCQILSVPPTKDAVA 43 (314)
Q Consensus 19 d~~~~LPd~ll~~Ils~L~~~d~~~ 43 (314)
..+..||.|+...||++|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5689999999999999999988754
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=58.17 E-value=7.3 Score=20.05 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.0
Q ss_pred CCCceEEEeecCCCC
Q 047644 300 MTKTKCLTLSAGVLH 314 (314)
Q Consensus 300 ~~~l~~L~l~~~~l~ 314 (314)
+++++.|.|+.|.|+
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467889999988774
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=58.17 E-value=7.3 Score=20.05 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.0
Q ss_pred CCCceEEEeecCCCC
Q 047644 300 MTKTKCLTLSAGVLH 314 (314)
Q Consensus 300 ~~~l~~L~l~~~~l~ 314 (314)
+++++.|.|+.|.|+
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 467889999988774
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=47.90 E-value=3.8 Score=40.43 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=42.5
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccce
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L 202 (314)
-+++|+|+-+..... ..+-.|++|++|+|++++...+|. ...++. |..|+|.+-.+ +-.+++++ .+|+.|
T Consensus 188 ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~L----ksL~~L 259 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENL----KSLYGL 259 (1096)
T ss_pred Hhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhh----hhhhcc
Confidence 456666655432221 245567777888777776655552 223444 77777777665 33334333 666666
Q ss_pred eeeee
Q 047644 203 SLTVY 207 (314)
Q Consensus 203 ~L~~c 207 (314)
++++.
T Consensus 260 DlsyN 264 (1096)
T KOG1859|consen 260 DLSYN 264 (1096)
T ss_pred chhHh
Confidence 66654
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=47.61 E-value=8.2 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.040 Sum_probs=28.4
Q ss_pred ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeec
Q 047644 147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.+.+|++|+|++....+.. +...++.|+.|++.+..+ +-..+ ...+.|+.+++.++..
T Consensus 116 ~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDLSYNRI 174 (414)
T ss_pred hhhcchheecccccccccc-chhhccchhhheeccCcchhccCC----ccchhhhcccCCcchh
Confidence 3455666655555444443 444455555555555554 22111 1245555555555543
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.39 E-value=10 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=13.3
Q ss_pred CCcceEEeeeEEcCCCcHHHH
Q 047644 172 PRLKTFHLMLQQPTNHLPHNL 192 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~l 192 (314)
++|++|+|.+..+++++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 567777777777765554443
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=42.81 E-value=14 Score=31.77 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=38.5
Q ss_pred cccCCCChHHHHHHhcCCC-hhhhhhhhcccccc------ccccccceeEEEecccc
Q 047644 19 DRISCLPDSILCQILSVPP-TKDAVATSILSPRW------KHAWTSVRNLCFDDELS 68 (314)
Q Consensus 19 d~~~~LPd~ll~~Ils~L~-~~d~~~~~~vskrW------r~l~~~~~~l~~~~~~~ 68 (314)
--+.+||.|++..|+-+|+ -+|++.+++|-..- +++|+..-.++|.+..+
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3488999999999999998 89999999874333 25677776677765543
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=41.43 E-value=7.5 Score=36.02 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=52.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++........ .+..+..|+.|.+.++...+.. ....+++|+.+.+.+..+.+-.-.. +..++.|+.+.
T Consensus 118 ~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~ 192 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLE---GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD 192 (414)
T ss_pred hcchheecccccccccc---chhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence 47788888776432221 1223455888888887655554 5556888888888888773321111 57888888888
Q ss_pred eeeeec
Q 047644 204 LTVYFT 209 (314)
Q Consensus 204 L~~c~~ 209 (314)
+.....
T Consensus 193 l~~n~i 198 (414)
T KOG0531|consen 193 LGGNSI 198 (414)
T ss_pred ccCCch
Confidence 887754
No 84
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=40.56 E-value=1.1e+02 Score=23.01 Aligned_cols=118 Identities=12% Similarity=0.149 Sum_probs=61.8
Q ss_pred HHHHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCc--ccccCCeeEEEEcc
Q 047644 81 AFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPAS--IYRSITLEVLRLRS 158 (314)
Q Consensus 81 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~--~~~c~~L~~L~L~~ 158 (314)
.|.+.+...+.......++++.+... ....+..++...-.+.++++.+ ........+... .-..++++.+.+.+
T Consensus 2 ~~~~~l~~~l~s~~~l~vk~l~i~~~---~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~~~i~~ 77 (142)
T PF01827_consen 2 KFFEKLQEILKSKHKLKVKKLKINSL---NQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKEFKIGG 77 (142)
T ss_pred hHHHHHHHHHcCCCCeeEEEEEEEcC---CHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceeheeEecc
Confidence 35566677777733345777776543 3356666676665667899988 211112222221 12246777777766
Q ss_pred eeecccCCCCcCCCCcceEEeeeEEcCCCcHHHH---hcCCccccceee
Q 047644 159 YFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNL---FSRCPCLQHLSL 204 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l---l~~cp~Le~L~L 204 (314)
...... ....|.++....+.--.++.+++..+ +..-|.++.-.+
T Consensus 78 ~~~~~~--~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 78 FVIDSF--PLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred cccccH--HHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 533221 23455666666664434444444333 334454554444
No 85
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=38.70 E-value=7 Score=34.59 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred cCCCChHHHHHHhcCCChhhhhhhhccccccccccccce
Q 047644 21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVR 59 (314)
Q Consensus 21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~~~ 59 (314)
+..+|++++..|++|+..+++++++.|++|-+.+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 567999999999999999999999999999986644333
No 86
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=37.44 E-value=24 Score=30.74 Aligned_cols=179 Identities=15% Similarity=0.051 Sum_probs=99.8
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEe--cCCCcc-------ccCCcccccCCeeEEEEcceeec-ccC
Q 047644 98 VEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDL--RDHERI-------PLPASIYRSITLEVLRLRSYFAL-TLP 165 (314)
Q Consensus 98 l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~--~~~~~~-------~l~~~~~~c~~L~~L~L~~~~~~-~~~ 165 (314)
+..+.+ ++.+-+.....|+..+++ ++++..+++- ...... .+.+.+..|++|+..+|+...+. ..|
T Consensus 32 ~~evdL--SGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 32 LVEVDL--SGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred eeEEec--cCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 444444 344455667789987765 3566665532 111111 23345678999999999987542 333
Q ss_pred C----CCcCCCCcceEEeeeEEcCCCc---H---------HHHhcCCccccceeeeeeeccCCCC--CcEEE-ecCCcce
Q 047644 166 P----DGVCFPRLKTFHLMLQQPTNHL---P---------HNLFSRCPCLQHLSLTVYFTAANPA--SNLII-SSATLKT 226 (314)
Q Consensus 166 ~----~~~~~~~L~~L~L~~~~~~~~~---l---------~~ll~~cp~Le~L~L~~c~~~~~~~--~~~~i-~~~~Lk~ 226 (314)
+ ...+-..|++|.|.++..+..+ + .+=++.-|.||...........+.. ..... +...||.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 2 2235688999999999874322 2 2223466777776555444311110 01111 2357888
Q ss_pred EEEEeeeeCCCCCCCcceE-------EEEcCCccEEEeeccccc-------ceeecCCCCceeEEEeEEecc
Q 047644 227 FVLEVMYCSHSSAPNQHTV-------TIVAPNLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSE 284 (314)
Q Consensus 227 L~i~~~~c~~~~~~~~~~l-------~~~~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~ 284 (314)
+.|. - +++. ++.+ ..++.+|+.|++.+.... ...+..-+.|+++.+.-|...
T Consensus 190 vki~---q--NgIr-pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 190 VKIQ---Q--NGIR-PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred EEee---e--cCcC-cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 8875 2 1221 1111 136788888888776443 112333466788888777554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.15 E-value=35 Score=17.94 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=10.9
Q ss_pred CCCceEEEeecCCCC
Q 047644 300 MTKTKCLTLSAGVLH 314 (314)
Q Consensus 300 ~~~l~~L~l~~~~l~ 314 (314)
+++++.|.++.|-|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467888888887663
No 88
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=29.69 E-value=79 Score=18.67 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=12.9
Q ss_pred CCccEEEeecccccceeecCCC-CceeEEE
Q 047644 250 PNLEFLDITDDLAVSYAVHQLP-SLHKAVY 278 (314)
Q Consensus 250 p~L~~L~l~~~~~~~~~~~~~p-~L~~l~l 278 (314)
++|++|.+.+.....+..+.+| +|+++.+
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP~sl~~L~f 41 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLPNSLKSLSF 41 (44)
T ss_pred CCCeEEEECCccCccCCCCccCCCceEEEe
Confidence 4556666644333323333332 4454444
No 89
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=29.43 E-value=48 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=19.6
Q ss_pred CCCcHHHHhcCCccccceeeeeee
Q 047644 185 TNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 185 ~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
++.++-.++..||+|+.+.+-.-.
T Consensus 29 SN~Dif~Lv~~CP~lk~iqiP~SY 52 (131)
T PF08004_consen 29 SNKDIFSLVERCPNLKAIQIPPSY 52 (131)
T ss_pred cchHHHHHHHhCCCCeEEeCChHH
Confidence 677899999999999988776543
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=26.05 E-value=70 Score=23.45 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=25.7
Q ss_pred cccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeee
Q 047644 146 YRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTV 206 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~ 206 (314)
+.|.+|+.+.+... ..... ..+.++++|+.+.+.+. +.. --...+.+|+.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc
Confidence 44667777777642 22222 13445667777777652 211 0123456777777777743
No 91
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=24.80 E-value=43 Score=20.62 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCcceEEeeeEEcCC---CcHHHHhcCCccccceeee
Q 047644 172 PRLKTFHLMLQQPTN---HLPHNLFSRCPCLQHLSLT 205 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~ 205 (314)
.+|+.+.+.+..... +-+.-++.+.+.||.+.+.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 566777776665422 2356678899999988775
No 92
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=24.46 E-value=82 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=27.6
Q ss_pred ccCCCChHHHHHHhcCCChhhhhhhhcccccc
Q 047644 20 RISCLPDSILCQILSVPPTKDAVATSILSPRW 51 (314)
Q Consensus 20 ~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrW 51 (314)
-++++|.+++.-||...++.++.+.-.-|..-
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL 34 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc
Confidence 47889999999999999999999988776443
Done!