Query 047644
Match_columns 314
No_of_seqs 119 out of 1435
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 23:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 3E-22 1E-26 178.3 -9.5 167 18-207 6-178 (336)
2 2p1m_B Transport inhibitor res 99.8 6.1E-21 2.1E-25 182.4 -6.7 174 18-208 3-195 (594)
3 3ogk_B Coronatine-insensitive 99.8 1.7E-19 5.8E-24 172.4 2.7 261 22-309 14-350 (592)
4 4fcg_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 104.6 8.7 198 96-313 81-289 (328)
5 4fcg_A Uncharacterized protein 99.0 1.6E-10 5.6E-15 102.2 5.7 174 124-313 127-313 (328)
6 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 5E-10 1.7E-14 71.0 3.0 39 17-55 5-43 (53)
7 2ast_B S-phase kinase-associat 98.8 3.7E-11 1.3E-15 106.4 -7.3 173 98-281 49-232 (336)
8 2o6q_A Variable lymphocyte rec 98.7 4.5E-09 1.5E-13 90.2 3.9 176 124-313 37-217 (270)
9 4fmz_A Internalin; leucine ric 98.7 7.9E-09 2.7E-13 91.7 5.7 17 297-313 329-345 (347)
10 3rfs_A Internalin B, repeat mo 98.7 1.8E-09 6.2E-14 92.8 1.3 174 124-313 41-217 (272)
11 3ogk_B Coronatine-insensitive 98.7 1.1E-09 3.9E-14 104.2 -0.2 36 170-205 291-326 (592)
12 2z80_A TOLL-like receptor 2, v 98.7 1.4E-08 4.7E-13 90.5 5.5 176 124-313 52-234 (353)
13 2p1m_B Transport inhibitor res 98.7 7.4E-10 2.5E-14 105.5 -3.0 108 97-207 106-221 (594)
14 1ozn_A Reticulon 4 receptor; N 98.7 5.1E-09 1.7E-13 90.5 2.4 177 124-313 56-237 (285)
15 1h6u_A Internalin H; cell adhe 98.7 1.5E-08 5E-13 88.8 5.2 166 124-313 63-229 (308)
16 4ezg_A Putative uncharacterize 98.7 5.1E-09 1.7E-13 85.5 2.1 148 124-313 44-193 (197)
17 1h6u_A Internalin H; cell adhe 98.7 8.5E-09 2.9E-13 90.3 3.6 144 124-283 85-229 (308)
18 4fmz_A Internalin; leucine ric 98.6 1.5E-08 5.1E-13 89.9 4.6 166 124-313 88-255 (347)
19 1ozn_A Reticulon 4 receptor; N 98.6 7.3E-09 2.5E-13 89.5 1.6 177 124-314 32-214 (285)
20 2z66_A Variable lymphocyte rec 98.6 7.6E-10 2.6E-14 96.7 -4.9 175 124-313 78-260 (306)
21 2z7x_B TOLL-like receptor 1, v 98.6 3.6E-08 1.2E-12 92.4 5.7 175 124-314 302-481 (520)
22 1o6v_A Internalin A; bacterial 98.6 7.5E-08 2.6E-12 89.1 7.4 166 124-314 68-234 (466)
23 3zyi_A Leucine-rich repeat-con 98.6 1.6E-08 5.5E-13 93.3 2.5 83 124-208 99-182 (452)
24 1wwl_A Monocyte differentiatio 98.6 1.2E-08 4E-13 89.5 1.5 153 149-314 149-309 (312)
25 1ogq_A PGIP-2, polygalacturona 98.6 1.5E-08 5.2E-13 88.9 2.1 201 96-313 50-256 (313)
26 1h6t_A Internalin B; cell adhe 98.6 3.7E-08 1.3E-12 85.5 4.4 164 125-312 47-211 (291)
27 3vq2_A TLR4, TOLL-like recepto 98.6 3.3E-09 1.1E-13 101.4 -2.6 61 147-207 374-434 (606)
28 1o6v_A Internalin A; bacterial 98.5 2.2E-07 7.5E-12 85.9 9.5 187 97-314 69-256 (466)
29 2z63_A TOLL-like receptor 4, v 98.5 1.8E-09 6.3E-14 102.2 -4.6 159 145-313 369-530 (570)
30 4ezg_A Putative uncharacterize 98.5 3.9E-08 1.3E-12 80.2 3.5 122 97-230 45-167 (197)
31 2z81_A CD282 antigen, TOLL-lik 98.5 1E-07 3.5E-12 89.9 6.5 178 124-313 26-208 (549)
32 2o6q_A Variable lymphocyte rec 98.5 4.9E-08 1.7E-12 83.6 3.9 174 125-314 17-194 (270)
33 1m9s_A Internalin B; cell inva 98.5 2.2E-08 7.5E-13 95.7 1.6 59 146-208 84-142 (605)
34 3zyi_A Leucine-rich repeat-con 98.5 1.2E-08 4.2E-13 94.0 -0.2 179 124-313 75-278 (452)
35 3zyj_A Leucine-rich repeat-con 98.5 2.5E-08 8.6E-13 91.6 1.9 153 148-313 135-291 (440)
36 2z80_A TOLL-like receptor 2, v 98.5 2E-08 6.8E-13 89.5 1.0 41 267-313 273-313 (353)
37 3m19_A Variable lymphocyte rec 98.5 4.3E-08 1.5E-12 83.1 3.0 153 149-313 35-191 (251)
38 3zyj_A Leucine-rich repeat-con 98.5 2.8E-08 9.6E-13 91.3 1.9 173 124-314 88-268 (440)
39 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 1.3E-07 4.5E-12 89.5 6.5 183 116-314 322-510 (562)
40 3rgz_A Protein brassinosteroid 98.5 5.2E-08 1.8E-12 95.9 3.6 156 146-313 197-355 (768)
41 1xeu_A Internalin C; cellular 98.5 4.6E-08 1.6E-12 83.6 2.7 57 148-208 40-96 (263)
42 2z63_A TOLL-like receptor 4, v 98.5 1.9E-08 6.4E-13 95.2 0.1 82 124-208 282-384 (570)
43 3t6q_A CD180 antigen; protein- 98.5 1.9E-08 6.6E-13 96.0 0.1 82 125-208 279-361 (606)
44 1ogq_A PGIP-2, polygalacturona 98.5 1.1E-08 3.9E-13 89.7 -1.4 198 96-313 76-280 (313)
45 1xku_A Decorin; proteoglycan, 98.5 3.1E-08 1E-12 87.4 1.2 80 124-207 76-155 (330)
46 3bz5_A Internalin-J, INLJ; leu 98.5 1.9E-07 6.6E-12 86.2 6.6 160 125-314 86-246 (457)
47 1xku_A Decorin; proteoglycan, 98.5 1.6E-07 5.6E-12 82.7 5.9 194 96-314 76-276 (330)
48 2id5_A Lingo-1, leucine rich r 98.5 1E-07 3.4E-12 88.4 4.6 179 124-313 104-308 (477)
49 3rfs_A Internalin B, repeat mo 98.5 5.3E-08 1.8E-12 83.5 2.5 153 147-314 39-194 (272)
50 3e4g_A ATP synthase subunit S, 98.4 6.9E-09 2.4E-13 82.6 -3.0 96 140-238 52-153 (176)
51 4glp_A Monocyte differentiatio 98.4 1.5E-08 5E-13 88.8 -1.3 155 147-314 143-307 (310)
52 2ca6_A RAN GTPase-activating p 98.4 2.9E-09 9.9E-14 96.2 -6.0 183 124-313 60-286 (386)
53 2z66_A Variable lymphocyte rec 98.4 1.8E-08 6.3E-13 87.8 -0.8 174 124-313 28-211 (306)
54 3bz5_A Internalin-J, INLJ; leu 98.4 3.4E-07 1.2E-11 84.5 7.3 161 124-314 64-225 (457)
55 1h6t_A Internalin B; cell adhe 98.4 1.2E-07 4.3E-12 82.1 4.1 147 147-314 44-191 (291)
56 3vq2_A TLR4, TOLL-like recepto 98.4 1.5E-08 5.2E-13 96.7 -1.9 18 296-313 492-509 (606)
57 2id5_A Lingo-1, leucine rich r 98.4 8.3E-08 2.8E-12 89.0 3.0 178 124-314 56-237 (477)
58 3rgz_A Protein brassinosteroid 98.4 4.7E-08 1.6E-12 96.1 1.0 173 124-313 100-281 (768)
59 3e4g_A ATP synthase subunit S, 98.4 5.5E-08 1.9E-12 77.4 1.1 85 172-261 61-150 (176)
60 2z62_A TOLL-like receptor 4, v 98.4 8.7E-08 3E-12 82.2 2.4 176 125-314 53-237 (276)
61 2ell_A Acidic leucine-rich nuc 98.4 5E-08 1.7E-12 77.3 0.7 103 124-230 24-128 (168)
62 3o6n_A APL1; leucine-rich repe 98.4 5.1E-07 1.8E-11 81.4 7.5 58 250-313 226-284 (390)
63 2ell_A Acidic leucine-rich nuc 98.4 1E-07 3.5E-12 75.4 2.5 58 149-209 24-83 (168)
64 3o6n_A APL1; leucine-rich repe 98.4 5.7E-07 1.9E-11 81.1 7.2 60 248-314 246-308 (390)
65 2z81_A CD282 antigen, TOLL-lik 98.4 2.3E-07 7.7E-12 87.5 4.7 178 124-313 310-509 (549)
66 3v47_A TOLL-like receptor 5B a 98.3 8.9E-08 3E-12 88.1 1.5 85 124-209 79-166 (455)
67 3oja_A Leucine-rich immune mol 98.3 1.8E-07 6.2E-12 87.1 3.5 165 125-313 35-203 (487)
68 3t6q_A CD180 antigen; protein- 98.3 4.8E-08 1.7E-12 93.2 -0.4 82 124-207 325-410 (606)
69 3v47_A TOLL-like receptor 5B a 98.3 1.6E-07 5.4E-12 86.4 2.7 61 124-184 103-166 (455)
70 1ziw_A TOLL-like receptor 3; i 98.3 1.2E-07 4E-12 91.9 1.4 32 249-280 535-569 (680)
71 2ft3_A Biglycan; proteoglycan, 98.3 2E-07 6.7E-12 82.3 2.7 173 124-314 78-277 (332)
72 3oja_B Anopheles plasmodium-re 98.3 7.5E-07 2.6E-11 85.0 6.8 171 125-313 100-290 (597)
73 2ft3_A Biglycan; proteoglycan, 98.3 1.2E-07 4.1E-12 83.6 1.1 111 197-314 193-307 (332)
74 1p9a_G Platelet glycoprotein I 98.3 7.6E-08 2.6E-12 83.5 -0.3 174 124-313 31-207 (290)
75 1m9s_A Internalin B; cell inva 98.3 2.1E-07 7.1E-12 88.9 2.6 166 124-313 43-209 (605)
76 3j0a_A TOLL-like receptor 5; m 98.3 7.5E-07 2.6E-11 88.5 6.7 83 125-208 74-159 (844)
77 4ecn_A Leucine-rich repeat pro 98.3 4.7E-07 1.6E-11 89.8 5.2 181 125-313 596-818 (876)
78 3o53_A Protein LRIM1, AGAP0063 98.3 2.1E-07 7.1E-12 81.7 2.3 181 110-314 18-204 (317)
79 4eco_A Uncharacterized protein 98.3 5.4E-07 1.9E-11 86.7 5.4 138 170-313 431-578 (636)
80 3oja_B Anopheles plasmodium-re 98.3 9E-07 3.1E-11 84.5 6.1 170 124-314 123-314 (597)
81 1p9a_G Platelet glycoprotein I 98.3 1.7E-07 5.7E-12 81.3 0.9 171 125-314 11-185 (290)
82 2xwt_C Thyrotropin receptor; s 98.2 5.1E-07 1.7E-11 75.7 3.8 168 124-311 55-236 (239)
83 2e31_A FBS1, F-box only protei 98.2 4E-07 1.4E-11 78.2 2.7 38 18-55 48-86 (297)
84 2je0_A Acidic leucine-rich nuc 98.2 5.1E-08 1.7E-12 75.6 -2.7 84 124-209 17-100 (149)
85 3oja_A Leucine-rich immune mol 98.2 2.7E-07 9.4E-12 85.9 1.6 192 96-314 34-227 (487)
86 1z7x_W Ribonuclease inhibitor; 98.2 6.9E-09 2.4E-13 95.7 -9.7 182 125-313 200-410 (461)
87 3o53_A Protein LRIM1, AGAP0063 98.2 3.9E-07 1.3E-11 79.9 2.0 206 80-314 20-227 (317)
88 4eco_A Uncharacterized protein 98.2 1.3E-07 4.6E-12 90.9 -1.4 81 124-209 305-389 (636)
89 2ca6_A RAN GTPase-activating p 98.2 4.4E-09 1.5E-13 94.9 -11.3 211 96-313 60-315 (386)
90 2ra8_A Uncharacterized protein 98.2 5.9E-07 2E-11 80.3 2.6 194 82-281 93-317 (362)
91 4ecn_A Leucine-rich repeat pro 98.2 2.3E-07 7.9E-12 92.0 -0.1 14 300-313 727-740 (876)
92 1wwl_A Monocyte differentiatio 98.2 2.7E-08 9.2E-13 87.2 -6.2 179 123-314 94-287 (312)
93 2ra8_A Uncharacterized protein 98.1 3.5E-07 1.2E-11 81.8 0.7 190 112-313 95-319 (362)
94 3g06_A SSPH2 (leucine-rich rep 98.1 4.8E-06 1.6E-10 79.7 8.2 131 124-281 61-191 (622)
95 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 6E-06 2E-10 78.1 8.7 19 295-313 397-415 (562)
96 3e6j_A Variable lymphocyte rec 98.1 1.5E-06 5.2E-11 72.4 4.0 133 139-280 32-168 (229)
97 3j0a_A TOLL-like receptor 5; m 98.1 1E-05 3.5E-10 80.4 10.6 103 125-230 267-370 (844)
98 2je0_A Acidic leucine-rich nuc 98.1 3.9E-07 1.3E-11 70.5 -0.0 59 148-209 16-76 (149)
99 2o6s_A Variable lymphocyte rec 98.1 2.1E-06 7.1E-11 70.3 4.3 127 149-281 28-158 (208)
100 3cvr_A Invasion plasmid antige 98.1 9.6E-06 3.3E-10 76.8 9.3 156 124-314 80-243 (571)
101 3l2o_B F-box only protein 4; s 98.1 6E-07 2.1E-11 76.4 0.9 35 20-54 4-38 (312)
102 1z7x_W Ribonuclease inhibitor; 98.1 1.6E-08 5.6E-13 93.1 -9.9 154 150-313 86-268 (461)
103 2v9t_B SLIT homolog 2 protein 98.1 1.6E-06 5.6E-11 71.8 3.1 125 149-279 32-160 (220)
104 2z7x_B TOLL-like receptor 1, v 98.1 1.6E-06 5.3E-11 81.2 3.1 59 149-208 21-80 (520)
105 3m19_A Variable lymphocyte rec 98.0 1.2E-06 4.3E-11 73.9 2.1 150 125-281 36-189 (251)
106 1ziw_A TOLL-like receptor 3; i 98.0 6.3E-07 2.1E-11 86.7 0.3 18 296-313 555-572 (680)
107 4glp_A Monocyte differentiatio 98.0 1.8E-06 6.3E-11 75.3 3.2 149 123-280 144-303 (310)
108 2xwt_C Thyrotropin receptor; s 98.0 5.8E-06 2E-10 69.1 6.1 176 124-314 31-218 (239)
109 3g06_A SSPH2 (leucine-rich rep 98.0 5.8E-06 2E-10 79.2 6.5 150 97-281 62-211 (622)
110 3cvr_A Invasion plasmid antige 98.0 1.2E-05 3.9E-10 76.2 8.1 132 124-281 100-240 (571)
111 3goz_A Leucine-rich repeat-con 98.0 7E-08 2.4E-12 86.3 -7.5 184 124-314 22-238 (362)
112 2z62_A TOLL-like receptor 4, v 97.9 3.2E-06 1.1E-10 72.3 2.8 157 149-314 28-190 (276)
113 1xeu_A Internalin C; cellular 97.9 6.8E-07 2.3E-11 76.3 -2.0 143 149-313 19-162 (263)
114 2o6s_A Variable lymphocyte rec 97.9 2.6E-06 9.1E-11 69.7 1.6 142 125-278 29-172 (208)
115 1a9n_A U2A', U2A'; complex (nu 97.9 8.5E-07 2.9E-11 70.7 -1.8 126 146-281 16-150 (176)
116 3goz_A Leucine-rich repeat-con 97.9 1.4E-07 4.7E-12 84.4 -7.5 212 97-314 52-297 (362)
117 3v7d_B Cell division control p 97.9 2.8E-06 9.4E-11 77.8 0.9 41 17-57 11-51 (464)
118 1jl5_A Outer protein YOPM; leu 97.8 1.9E-05 6.6E-10 72.7 6.4 118 124-261 131-248 (454)
119 1ds9_A Outer arm dynein; leuci 97.8 1.4E-07 4.9E-12 76.8 -7.4 63 144-209 43-105 (198)
120 4g8a_A TOLL-like receptor 4; l 97.8 8.8E-06 3E-10 77.6 2.9 127 149-281 52-183 (635)
121 4g8a_A TOLL-like receptor 4; l 97.7 4.8E-06 1.6E-10 79.4 0.5 131 124-262 52-185 (635)
122 2v70_A SLIT-2, SLIT homolog 2 97.7 1.9E-06 6.4E-11 71.4 -2.5 144 127-280 14-162 (220)
123 2ovr_B FBW7, F-BOX/WD repeat p 97.7 1.6E-05 5.5E-10 72.4 2.7 38 17-54 15-52 (445)
124 2v70_A SLIT-2, SLIT homolog 2 97.6 1.6E-05 5.5E-10 65.7 2.3 133 124-262 32-165 (220)
125 4ay9_X Follicle-stimulating ho 97.6 9.3E-05 3.2E-09 65.6 6.8 179 124-313 30-214 (350)
126 1p22_A F-BOX/WD-repeat protein 97.6 9.6E-06 3.3E-10 73.8 0.2 38 17-54 7-48 (435)
127 3e6j_A Variable lymphocyte rec 97.6 2.3E-05 7.7E-10 65.2 2.3 131 124-262 40-171 (229)
128 3un9_A NLR family member X1; l 97.6 8.2E-08 2.8E-12 86.3 -13.6 156 121-281 69-249 (372)
129 2xot_A Amphoterin-induced prot 97.6 2.9E-05 9.9E-10 69.2 3.0 153 149-313 39-201 (361)
130 1jl5_A Outer protein YOPM; leu 97.5 0.00013 4.6E-09 67.0 7.2 34 150-184 216-249 (454)
131 2xot_A Amphoterin-induced prot 97.5 1.3E-05 4.6E-10 71.4 0.4 150 124-280 39-198 (361)
132 2v9t_B SLIT homolog 2 protein 97.5 3E-05 1E-09 64.1 1.6 131 124-262 32-164 (220)
133 2o6r_A Variable lymphocyte rec 97.3 6.6E-05 2.3E-09 59.5 1.7 32 249-280 99-133 (177)
134 1a9n_A U2A', U2A'; complex (nu 97.3 3.5E-05 1.2E-09 61.2 -0.0 129 125-262 20-152 (176)
135 1w8a_A SLIT protein; signaling 97.3 3.2E-05 1.1E-09 62.4 -0.4 102 150-281 30-136 (192)
136 1dce_A Protein (RAB geranylger 97.2 6.4E-05 2.2E-09 71.2 0.6 79 125-209 442-520 (567)
137 2o6r_A Variable lymphocyte rec 97.1 0.00018 6.1E-09 57.0 2.5 108 149-262 28-136 (177)
138 2wfh_A SLIT homolog 2 protein 97.1 0.00011 3.7E-09 59.4 0.7 33 248-280 100-135 (193)
139 1w8a_A SLIT protein; signaling 96.9 0.00018 6.1E-09 57.9 0.7 85 124-209 29-114 (192)
140 2wfh_A SLIT homolog 2 protein 96.9 0.00023 7.8E-09 57.4 1.2 59 149-208 31-89 (193)
141 1ds9_A Outer arm dynein; leuci 96.8 0.00025 8.5E-09 57.3 0.3 99 124-230 48-148 (198)
142 3un9_A NLR family member X1; l 96.7 7.6E-06 2.6E-10 73.4 -9.9 160 97-263 73-252 (372)
143 4b8c_D Glucose-repressible alc 96.6 0.00022 7.4E-09 69.6 -1.7 111 143-262 218-328 (727)
144 4b8c_D Glucose-repressible alc 96.5 0.0002 7E-09 69.8 -2.1 101 124-230 224-324 (727)
145 1io0_A Tropomodulin; LRR prote 96.5 0.00044 1.5E-08 55.4 0.0 33 172-204 93-128 (185)
146 1dce_A Protein (RAB geranylger 96.4 0.0012 4.3E-08 62.3 2.8 83 124-209 463-545 (567)
147 1io0_A Tropomodulin; LRR prote 96.2 0.00013 4.4E-09 58.5 -4.5 84 125-208 66-162 (185)
148 2r9u_A Variable lymphocyte rec 96.0 0.0052 1.8E-07 48.4 4.0 59 149-208 33-92 (174)
149 4ay9_X Follicle-stimulating ho 96.0 0.019 6.6E-07 50.4 8.2 159 139-310 22-186 (350)
150 3g39_A Variable lymphocyte rec 96.0 0.0045 1.5E-07 48.5 3.4 60 149-209 30-90 (170)
151 3sb4_A Hypothetical leucine ri 95.8 0.0004 1.4E-08 60.8 -3.9 34 148-182 100-134 (329)
152 2r9u_A Variable lymphocyte rec 95.7 0.0069 2.4E-07 47.7 3.4 60 147-207 55-115 (174)
153 3g39_A Variable lymphocyte rec 95.7 0.0088 3E-07 46.8 3.9 83 124-209 30-114 (170)
154 3sb4_A Hypothetical leucine ri 95.6 0.0057 2E-07 53.3 3.1 100 98-207 27-134 (329)
155 4fdw_A Leucine rich hypothetic 95.0 0.0026 8.9E-08 57.4 -1.2 75 125-206 158-235 (401)
156 2ifg_A High affinity nerve gro 94.5 0.015 5.1E-07 51.0 2.2 66 141-208 24-91 (347)
157 4fdw_A Leucine rich hypothetic 94.0 0.071 2.4E-06 47.9 5.8 53 125-180 181-234 (401)
158 2ifg_A High affinity nerve gro 93.0 0.05 1.7E-06 47.5 3.0 81 125-209 32-115 (347)
159 3rw6_A Nuclear RNA export fact 92.7 0.016 5.6E-07 49.0 -0.6 81 124-205 170-259 (267)
160 1pgv_A TMD-1, tropomodulin TMD 86.2 0.16 5.5E-06 40.7 0.4 76 81-159 28-108 (197)
161 1pgv_A TMD-1, tropomodulin TMD 84.3 0.13 4.6E-06 41.2 -1.0 98 110-207 25-136 (197)
162 3rw6_A Nuclear RNA export fact 80.3 0.47 1.6E-05 40.0 0.9 38 171-208 169-207 (267)
163 4gt6_A Cell surface protein; l 78.3 1.3 4.5E-05 39.2 3.2 127 167-313 260-390 (394)
164 4fs7_A Uncharacterized protein 76.3 2.7 9.2E-05 37.1 4.7 138 146-306 250-393 (394)
165 4gt6_A Cell surface protein; l 42.1 17 0.00057 31.9 3.3 79 145-230 284-365 (394)
166 4h09_A Hypothetical leucine ri 41.1 18 0.0006 31.4 3.2 55 146-205 260-318 (379)
167 3rfe_A Platelet glycoprotein I 38.7 18 0.00063 26.2 2.5 36 149-184 31-67 (130)
168 4fs7_A Uncharacterized protein 36.4 20 0.00069 31.3 2.8 79 145-230 293-374 (394)
169 4h09_A Hypothetical leucine ri 22.7 39 0.0014 29.1 2.3 81 145-229 236-317 (379)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3e-22 Score=178.34 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=85.2
Q ss_pred CcccCCCChHHHHHHhcCCChhhhhhhhcccccccccccc---ceeEEEecccccCCCccccccHHHHHHHHHHHHccCC
Q 047644 18 EDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTS---VRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTH 94 (314)
Q Consensus 18 ~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 94 (314)
...+++||||++.+||+||+.+|+++++.|||+|+++... ...+++...... .. .+...+..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~---------~~----~~~~~~~~-- 70 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH---------PD----VTGRLLSQ-- 70 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC---------HH----HHHHHHHT--
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC---------HH----HHHhhhhc--
Confidence 4558999999999999999999999999999999988531 224444332221 11 22222111
Q ss_pred CCCeeEEEEEeccCCCc-chHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCC
Q 047644 95 PSSVEKFSLRCSYLRSL-GMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFP 172 (314)
Q Consensus 95 ~~~l~~l~l~~~~~~~~-~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~ 172 (314)
.++.+.+....-... .. .....++++|+++.+......++..+..|++|++|+|+++...+ .+.....++
T Consensus 71 --~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 71 --GVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp --TCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred --cceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 144443332110000 00 00013455555554432212233344445555555555553221 111223355
Q ss_pred CcceEEeeeE-EcCCCcHHHHhcCCccccceeeeee
Q 047644 173 RLKTFHLMLQ-QPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 173 ~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
+|++|+|.++ .+++..+..++..||.|++|++.+|
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 5555555555 3344445555555555555555555
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=6.1e-21 Score=182.43 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=95.3
Q ss_pred CcccCCCChHHHHHHhcCCC-hhhhhhhhccccccccccccc-eeEEEecccccCCCccccccHHHHHHHHHHHHccCCC
Q 047644 18 EDRISCLPDSILCQILSVPP-TKDAVATSILSPRWKHAWTSV-RNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHP 95 (314)
Q Consensus 18 ~d~~~~LPd~ll~~Ils~L~-~~d~~~~~~vskrWr~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 95 (314)
.|+++.||||++.+||+||+ .+|+++++.|||||+++.... ..+.+....... . ...+.+.
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--------~-------~~~~~~~-- 65 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS--------P-------ATVIRRF-- 65 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC--------H-------HHHHHHC--
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC--------H-------HHHHhhC--
Confidence 58999999999999999999 999999999999999883211 123332211100 0 0112221
Q ss_pred CCeeEEEEEeccC---------CCcchHHHHHHHHHh--CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-c
Q 047644 96 SSVEKFSLRCSYL---------RSLGMFDYWVSSAIS--RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-T 163 (314)
Q Consensus 96 ~~l~~l~l~~~~~---------~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~ 163 (314)
+.++++.+..+.. .+...+..|+..... .++++|++..+......+......|++|++|+|.+|... +
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 2377777776431 122345567765543 467888887664322221111124677777777766322 1
Q ss_pred --cCCCCcCCCCcceEEeeeEEcCCCc---HHHHhcCCccccceeeeeee
Q 047644 164 --LPPDGVCFPRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 164 --~~~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~ 208 (314)
.+.....+++|++|+|.++.+++.. +..+...||+|++|++.+|.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 1112235677777777766653322 44445566677777776664
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=1.7e-19 Score=172.41 Aligned_cols=261 Identities=12% Similarity=0.110 Sum_probs=132.7
Q ss_pred CCCChHHHHHHhcCC-Chhhhhhhhccccccccccccce-eEEEecccccCCCccccccHHHHHHHHHHHHccCCCCCee
Q 047644 22 SCLPDSILCQILSVP-PTKDAVATSILSPRWKHAWTSVR-NLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVE 99 (314)
Q Consensus 22 ~~LPd~ll~~Ils~L-~~~d~~~~~~vskrWr~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~ 99 (314)
++||||++.+||+|| +.+|+++++.|||||++++...+ .+.+... +. .+...++.+... ++
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~--------------~~~~~~~~~~~~--L~ 76 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YT--------------ATPDRLSRRFPN--LR 76 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GG--------------SCHHHHHHHCTT--CS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cc--------------cChHHHHHhCCC--Ce
Confidence 489999999999999 79999999999999998854333 1221111 10 011222222221 55
Q ss_pred EEEEEeccC---------CCcchHHHHHHHHH----------------------------hCCceEEEEEecCC-Ccccc
Q 047644 100 KFSLRCSYL---------RSLGMFDYWVSSAI----------------------------SRNVREIEIDLRDH-ERIPL 141 (314)
Q Consensus 100 ~l~l~~~~~---------~~~~~~~~w~~~~~----------------------------~~~l~~L~l~~~~~-~~~~l 141 (314)
++.++.+.. ........|+.... ..++++|++..|.. ....+
T Consensus 77 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 77 SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred EEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 555544221 11122233443332 22344444444321 01112
Q ss_pred CCcccccCCeeEEEEcceeecccC-----CCCcCCCCcceEEeeeEEcC---CCcHHHHhcCCccccceeeeeeeccCCC
Q 047644 142 PASIYRSITLEVLRLRSYFALTLP-----PDGVCFPRLKTFHLMLQQPT---NHLPHNLFSRCPCLQHLSLTVYFTAANP 213 (314)
Q Consensus 142 ~~~~~~c~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~~~~~ 213 (314)
+..+..|++|++|+|+++...+.. .....+++|++|+|.+..++ +..+..++.+||+|++|++.+|.. .++
T Consensus 157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l 235 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LEL 235 (592)
T ss_dssp HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGG
T ss_pred HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHH
Confidence 222224555566655555332210 01224556666666555442 345566666777777777777654 222
Q ss_pred CCcEEEecCCcceEEEEeeeeCCC------------------------CCCCcceEEEEcCCccEEEeecccccc----e
Q 047644 214 ASNLIISSATLKTFVLEVMYCSHS------------------------SAPNQHTVTIVAPNLEFLDITDDLAVS----Y 265 (314)
Q Consensus 214 ~~~~~i~~~~Lk~L~i~~~~c~~~------------------------~~~~~~~l~~~~p~L~~L~l~~~~~~~----~ 265 (314)
.......++|+.|.+. .+... .......+.-.+|+|++|+++++.... .
T Consensus 236 -~~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 236 -VGFFKAAANLEEFCGG--SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp -HHHHHHCTTCCEEEEC--BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred -HHHHhhhhHHHhhccc--ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 1111123445555553 11100 011111122246678888887765321 1
Q ss_pred eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEee
Q 047644 266 AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLS 309 (314)
Q Consensus 266 ~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~ 309 (314)
.+..+|+|+++++..... ...+..+..++++++.|.|+
T Consensus 313 ~~~~~~~L~~L~L~~~~~------~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIG------DRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHTTCTTCCEEEEEGGGH------HHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhCcCCCEEeccCccC------HHHHHHHHHhCCCCCEEEee
Confidence 246778888888762111 23456677788888888888
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=6.9e-11 Score=104.63 Aligned_cols=198 Identities=19% Similarity=0.121 Sum_probs=129.2
Q ss_pred CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcc
Q 047644 96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLK 175 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~ 175 (314)
..+..+.+....-.. +...+.. -.++++|+++.+... .+|..+..+++|++|.|+++.+...|.....+++|+
T Consensus 81 ~~l~~L~L~~n~l~~---lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ---FPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSS---CCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchh---cChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 448888887554211 1111111 358899999887644 677778888999999999886666665667889999
Q ss_pred eEEeeeEEcCCCcHHH--------HhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEE
Q 047644 176 TFHLMLQQPTNHLPHN--------LFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI 247 (314)
Q Consensus 176 ~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~ 247 (314)
.|+|.++......-.. .+.+++.|++|+|.+|.. ..+ ...--..++|+.|+++ ++... .. +.. .-
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~l-p~~l~~l~~L~~L~L~--~N~l~-~l-~~~-l~ 226 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSL-PASIANLQNLKSLKIR--NSPLS-AL-GPA-IH 226 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCC-CGGGGGCTTCCEEEEE--SSCCC-CC-CGG-GG
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-Ccc-hHhhcCCCCCCEEEcc--CCCCC-cC-chh-hc
Confidence 9999988652211111 134589999999999865 333 1111245789999997 34322 11 111 23
Q ss_pred EcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 248 VAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 248 ~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..|+|++|+++++... ...+..+++|+.+++..+... ..+...+.++++++.|.|++|.+
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------LTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------CBCCTTGGGCTTCCEEECTTCTT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch------hhcchhhhcCCCCCEEeCCCCCc
Confidence 5689999999986543 234677899999988764221 12233478899999999998764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.04 E-value=1.6e-10 Score=102.24 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=100.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCc---------CCCCcceEEeeeEEcCCCcHHHHh
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGV---------CFPRLKTFHLMLQQPTNHLPHNLF 193 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~---------~~~~L~~L~L~~~~~~~~~l~~ll 193 (314)
.++++|+++.+... .+|..+..+++|++|.|++|... ..|.... .+++|+.|+|.+..++ .+..-+
T Consensus 127 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l 202 (328)
T 4fcg_A 127 AGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASI 202 (328)
T ss_dssp TTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGG
T ss_pred CCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhh
Confidence 46777777776543 56666777777777777776333 2232221 3777777777777764 233346
Q ss_pred cCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCC
Q 047644 194 SRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQL 270 (314)
Q Consensus 194 ~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~ 270 (314)
..++.|++|+|.+|.. .++ ...--..++|+.|+++ +|..... .....-..++|++|+++++... ...+.++
T Consensus 203 ~~l~~L~~L~L~~N~l-~~l-~~~l~~l~~L~~L~Ls--~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPL-SAL-GPAIHHLPKLEELDLR--GCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp GGCTTCCEEEEESSCC-CCC-CGGGGGCTTCCEEECT--TCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred cCCCCCCEEEccCCCC-CcC-chhhccCCCCCEEECc--CCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 6777777777777755 333 1111134677777775 3433211 1111224577777777775332 2235667
Q ss_pred CCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 271 PSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 271 p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
++|+.+++..+.. ...+...+..+++++.+.+..+.+
T Consensus 277 ~~L~~L~L~~n~~------~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 277 TQLEKLDLRGCVN------LSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCEEECTTCTT------CCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCCEEeCCCCCc------hhhccHHHhhccCceEEeCCHHHH
Confidence 7777777765422 223444567777777777665543
No 6
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.92 E-value=5e-10 Score=71.04 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCcccCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644 17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW 55 (314)
Q Consensus 17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~ 55 (314)
....++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999764
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.81 E-value=3.7e-11 Score=106.38 Aligned_cols=173 Identities=12% Similarity=0.078 Sum_probs=102.2
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc--cCCCCcCCCCcc
Q 047644 98 VEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT--LPPDGVCFPRLK 175 (314)
Q Consensus 98 l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~--~~~~~~~~~~L~ 175 (314)
++.+.+.... .. ...+......+++.+++..+... ..+..++.+++|++|+|+++...+ .+.....+++|+
T Consensus 49 ~~~l~l~~~~-~~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKN-LH----PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCB-CC----HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred heeecccccc-CC----HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 5666654322 11 23445555578999998665322 223346678999999999986543 333456899999
Q ss_pred eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC-Cc
Q 047644 176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP-NL 252 (314)
Q Consensus 176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p-~L 252 (314)
+|+|.++.+++.... .+..||.|++|++.+|....+ + ....-..++|+.|+++ +|...+..+.....-..| +|
T Consensus 122 ~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 122 NLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLS--WCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp EEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECC--CCTTCCHHHHHHHHHHSCTTC
T ss_pred EEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCC--CCCCcChHHHHHHHHhcccCC
Confidence 999999987655444 456799999999999953121 1 1111245677777776 442222111122223455 66
Q ss_pred cEEEeecccc--c----ceeecCCCCceeEEEeEE
Q 047644 253 EFLDITDDLA--V----SYAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 253 ~~L~l~~~~~--~----~~~~~~~p~L~~l~l~~~ 281 (314)
++|+++++.. . ...+..+|+|+++++..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 6666666531 1 122344566666665543
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.74 E-value=4.5e-09 Score=90.19 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=107.0
Q ss_pred CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|++..+... .++. .+..+++|++|.|+++.....+.. ...+++|++|+|.+..+..-. ...+..++.|++
T Consensus 37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 36777777665432 2332 455678888888888766555533 356888888888887763321 244567888888
Q ss_pred eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEE
Q 047644 202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVY 278 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l 278 (314)
|++.++.. ........-..++|+.|+++ ++.. ... .....-..++|++|++++.....+ .+.++++|+.+++
T Consensus 114 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls--~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 114 LRLDRNQL-KSLPPRVFDSLTKLTYLSLG--YNEL-QSL-PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred EECCCCcc-CeeCHHHhCcCcCCCEEECC--CCcC-Ccc-CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 88888754 32201111134678888886 3322 111 111112458888888887654422 3566788888888
Q ss_pred eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..+... ......+..+++++.|.|++|++
T Consensus 189 ~~N~l~------~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 189 DNNQLK------RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCS------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCC------cCCHHHhccccCCCEEEecCCCe
Confidence 654221 11223456788888998888876
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.74 E-value=7.9e-09 Score=91.72 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=8.7
Q ss_pred hhcCCCceEEEeecCCC
Q 047644 297 LAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 297 l~~~~~l~~L~l~~~~l 313 (314)
+..+++++.|.+++|.|
T Consensus 329 ~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 329 LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGCTTCSEESSSCC--
T ss_pred hhhhhccceeehhhhcc
Confidence 45555556665555554
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.74 E-value=1.8e-09 Score=92.79 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=98.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
..+++|++..+.... ...+..+++|++|.++++...+.+ ....+++|+.|+|.++.++.- ....+..++.|++|+
T Consensus 41 ~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 467777666553221 223556677777777776555443 455677777777777766321 233456777777777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
+.+|.. .+......-..++|+.|+++ ++.. ... .....-..++|++|++++...... .+..+++|+.+++..
T Consensus 116 L~~n~l-~~~~~~~~~~l~~L~~L~L~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 116 LVENQL-QSLPDGVFDKLTNLTYLNLA--HNQL-QSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CTTSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcC-CccCHHHhccCCCCCEEECC--CCcc-Ccc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 777754 32201101134667777775 3321 111 111112457788888777654322 245677788777765
Q ss_pred EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+... ......+..+++++.|.+++|.+
T Consensus 191 N~l~------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 191 NQLK------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SCCS------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCC------ccCHHHHhCCcCCCEEEccCCCc
Confidence 4221 11224466778888888877765
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.73 E-value=1.1e-09 Score=104.15 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=19.6
Q ss_pred CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeee
Q 047644 170 CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLT 205 (314)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~ 205 (314)
.+++|++|+|.++.+++..+..++..||+|++|++.
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 455555555555555444444555555555555555
No 12
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.69 E-value=1.4e-08 Score=90.54 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=113.7
Q ss_pred CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|+++.+... .++. .+..+++|+.|.|+++...+.+ .....+++|++|+|.+..++.- ....+..++.|++
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 47888888766432 3333 5667889999999888665553 2456788999999988887542 2445678899999
Q ss_pred eeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeE
Q 047644 202 LSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKA 276 (314)
Q Consensus 202 L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l 276 (314)
|++.++.. ..+ .. ..-..++|+.|+++ ++....... ....-..++|++|++++..... ..+.+++.|+++
T Consensus 129 L~L~~n~l-~~l-~~~~~~~~l~~L~~L~l~--~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 129 LNLLGNPY-KTL-GETSLFSHLTKLQILRVG--NMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp EECTTCCC-SSS-CSSCSCTTCTTCCEEEEE--ESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EECCCCCC-ccc-CchhhhccCCCCcEEECC--CCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 99988865 333 22 11245789999987 442211100 0011245788889888875442 345677888888
Q ss_pred EEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 277 VYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
++..+.. ......++..+++++.|.++.|.+
T Consensus 204 ~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 204 ILHMKQH------ILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp EEECSCS------TTHHHHHHHHTTTEEEEEEESCBC
T ss_pred cCCCCcc------ccchhhhhhhcccccEEECCCCcc
Confidence 8865422 222334566788888888888765
No 13
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=7.4e-10 Score=105.48 Aligned_cols=108 Identities=17% Similarity=0.140 Sum_probs=71.6
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CccccCCcccccCCeeEEEEcceeeccc-----CCCCcC
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDH-ERIPLPASIYRSITLEVLRLRSYFALTL-----PPDGVC 170 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~-~~~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~~~~~ 170 (314)
.++++.+..+. ..+..+...... .+++++|++..|.. ....++.....|++|++|+|++|.+.+. +.....
T Consensus 106 ~L~~L~L~~~~-~~~~~~~~l~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 106 WLEEIRLKRMV-VTDDCLELIAKS--FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TCCEEEEESCB-CCHHHHHHHHHH--CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCeEEeeCcE-EcHHHHHHHHHh--CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 48888888654 232222221111 35899999987732 2222444445789999999998864331 113346
Q ss_pred CCCcceEEeeeEE--cCCCcHHHHhcCCccccceeeeee
Q 047644 171 FPRLKTFHLMLQQ--PTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 171 ~~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
+++|++|+|.++. +++..+..++..||+|++|++.+|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 7899999998886 466678888888899999988887
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.68 E-value=5.1e-09 Score=90.46 Aligned_cols=177 Identities=19% Similarity=0.092 Sum_probs=115.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEccee-eccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYF-ALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|++..+.... ..+..+..+++|++|.|+++. .... +.....+++|++|+|.+..++.. ....+..++.|++
T Consensus 56 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 56 RNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQY 133 (285)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccce-eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCE
Confidence 478888887664321 224456678899999998875 4444 23556788999999988877432 2344678899999
Q ss_pred eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEE
Q 047644 202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVY 278 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l 278 (314)
|++.++.. ..+....--..++|+.|+++ ++.. ... .....-..++|++|++++..... ..+.++++|+.+++
T Consensus 134 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 134 LYLQDNAL-QALPDDTFRDLGNLTHLFLH--GNRI-SSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCcc-cccCHhHhccCCCccEEECC--CCcc-ccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 99998865 33301111135788888886 3321 110 00011146889999999876542 34667889999988
Q ss_pred eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..+.. .......+..+++++.|.+++|.+
T Consensus 209 ~~n~l------~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 209 FANNL------SALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CSSCC------SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCCcC------CcCCHHHcccCcccCEEeccCCCc
Confidence 76532 223446788999999999999875
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.68 E-value=1.5e-08 Score=88.79 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=105.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+... .++. +..+++|+.|.|+++...+.+ ....+++|+.|+|.++.+++- .. +..++.|++|+
T Consensus 63 ~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT--DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC--CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence 47788887766432 2333 566778888888877655554 566778888888888777442 22 67788888888
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEe
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMF 282 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~ 282 (314)
+.+|.. .+. .. --..++|+.|+++ +|.. .. ... .-..++|+.|++++...... .+..++.|+++++..+.
T Consensus 136 l~~n~l-~~~-~~-l~~l~~L~~L~l~--~n~l-~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 136 LDLNQI-TNI-SP-LAGLTNLQYLSIG--NAQV-SD--LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCSSCC-CCC-GG-GGGCTTCCEEECC--SSCC-CC--CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred CCCCcc-CcC-cc-ccCCCCccEEEcc--CCcC-CC--Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence 888765 443 22 1134678888886 3322 11 111 23567888888887654422 26677888888886543
Q ss_pred ccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
... +. -+..+++++.|.+++|.+
T Consensus 207 l~~-------~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 207 ISD-------VS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCB-------CG-GGTTCTTCCEEEEEEEEE
T ss_pred cCc-------cc-cccCCCCCCEEEccCCee
Confidence 211 11 267888899998888764
No 16
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.67 E-value=5.1e-09 Score=85.48 Aligned_cols=148 Identities=12% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+... .++ .+..+++|++|.++++...+.+ ....+++|++|+|.+..+++.... .+..+|.|+.|+
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence 46667766655432 333 3555666677766666333332 444566666666666555321111 244566666666
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc-cc-ceeecCCCCceeEEEeEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL-AV-SYAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~-~~-~~~~~~~p~L~~l~l~~~ 281 (314)
+.+|.. .+. . +.. .-..++|++|+++++. .. ...+..++.|+.+++..+
T Consensus 119 Ls~n~i-~~~--~-------------------------~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 119 ISHSAH-DDS--I-------------------------LTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCSSBC-BGG--G-------------------------HHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred ecCCcc-CcH--h-------------------------HHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 666643 211 0 000 0123455555555443 21 113456677777777554
Q ss_pred eccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 282 FSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 282 ~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
... . +. .+.++++++.|.+++|.+
T Consensus 170 ~i~-----~--~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 170 GVH-----D--YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCC-----C--CT-TGGGCSSCCEEEECBC--
T ss_pred CCc-----C--hH-HhccCCCCCEEEeeCccc
Confidence 221 1 11 467778888888888765
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.67 E-value=8.5e-09 Score=90.27 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+.... + ..+..+++|+.|.++++...+.+ ....+++|+.|+|.+..++.-.- +..++.|+.|+
T Consensus 85 ~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~ 157 (308)
T 1h6u_A 85 TKITELELSGNPLKN--V-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLS 157 (308)
T ss_dssp CSCCEEECCSCCCSC--C-GGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEE
T ss_pred CCCCEEEccCCcCCC--c-hhhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEE
Confidence 356666666554322 1 23455666777777666554444 35566677777776666633211 55666777777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEe
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMF 282 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~ 282 (314)
+.+|.. .++ .. .-..++|+.|+++ ++.. ... .. ....|+|++|++++.... ...+..++.|+.+++..+.
T Consensus 158 l~~n~l-~~~-~~-l~~l~~L~~L~l~--~n~l-~~~--~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 158 IGNAQV-SDL-TP-LANLSKLTTLKAD--DNKI-SDI--SP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCSSCC-CCC-GG-GTTCTTCCEEECC--SSCC-CCC--GG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred ccCCcC-CCC-hh-hcCCCCCCEEECC--CCcc-CcC--hh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 766654 333 22 1133566666665 2221 111 11 224566777776665433 1135566667776666654
Q ss_pred c
Q 047644 283 S 283 (314)
Q Consensus 283 ~ 283 (314)
.
T Consensus 229 i 229 (308)
T 1h6u_A 229 I 229 (308)
T ss_dssp E
T ss_pred e
Confidence 3
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.65 E-value=1.5e-08 Score=89.92 Aligned_cols=166 Identities=11% Similarity=0.094 Sum_probs=92.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L 202 (314)
.++++|++..+.... + ..+..+++|++|.++++...+.+ ....+++|+.|++.++.. ..- .. +..++.|++|
T Consensus 88 ~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L 160 (347)
T 4fmz_A 88 VKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYL 160 (347)
T ss_dssp TTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCCCG-GGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEE
T ss_pred CcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccCch-hhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEE
Confidence 356666665553222 1 23445666666666666544444 345666666666666643 221 11 5566666776
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEE
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVM 281 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~ 281 (314)
++.+|.. .+. .. .-..++|+.|+++ +|..... .. ....++|++|.+++...... .+..++.|+++++..+
T Consensus 161 ~l~~~~~-~~~-~~-~~~l~~L~~L~l~--~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 161 TVTESKV-KDV-TP-IANLTDLYSLSLN--YNQIEDI---SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN 231 (347)
T ss_dssp ECCSSCC-CCC-GG-GGGCTTCSEEECT--TSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred EecCCCc-CCc-hh-hccCCCCCEEEcc--CCccccc---cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence 6666654 332 11 1134667777775 3322111 11 22557777777777654422 2567788888887654
Q ss_pred eccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 282 FSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 282 ~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.... +.. +..+++++.|.++.|.+
T Consensus 232 ~l~~-------~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 232 KITD-------LSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CCCC-------CGG-GTTCTTCCEEECCSSCC
T ss_pred ccCC-------Ccc-hhcCCCCCEEECCCCcc
Confidence 2211 111 77888999999888865
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.62 E-value=7.3e-09 Score=89.46 Aligned_cols=177 Identities=18% Similarity=0.073 Sum_probs=118.7
Q ss_pred CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEE-cCCCcHHHHhcCCcccc
Q 047644 124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSRCPCLQ 200 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le 200 (314)
.++++|+++.+... .++ ..+..+++|++|.|+++...+. +.....+++|++|+|.+.. ++.- ....+..++.|+
T Consensus 32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCC
Confidence 57888888766432 233 3456789999999999866555 3356689999999999986 4332 134467899999
Q ss_pred ceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEE
Q 047644 201 HLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAV 277 (314)
Q Consensus 201 ~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~ 277 (314)
+|++.++.. .+......-..++|+.|+++ ++.. ... .....-..++|++|++++.....+ .+..+++|+.++
T Consensus 109 ~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 109 TLHLDRCGL-QELGPGLFRGLAALQYLYLQ--DNAL-QAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp EEECTTSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCcC-CEECHhHhhCCcCCCEEECC--CCcc-ccc-CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 999999865 33201111135789999997 3322 111 111112478999999998765422 367789999999
Q ss_pred EeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 278 YYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 278 l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+..+... ......+..+++++.|.++.|.+.
T Consensus 184 l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 184 LHQNRVA------HVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCSSCCC------EECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccc------ccCHhHccCcccccEeeCCCCcCC
Confidence 8764221 112345678999999999998763
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.61 E-value=7.6e-10 Score=96.67 Aligned_cols=175 Identities=12% Similarity=0.118 Sum_probs=116.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|+++.+... .++..+..+++|++|.++++...+.+. ....+++|+.|+|.+..++.. ....+..++.|++
T Consensus 78 ~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 154 (306)
T 2z66_A 78 TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEV 154 (306)
T ss_dssp SCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCE
T ss_pred cccCEEECCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCE
Confidence 57899988876532 456667778999999999986665542 466889999999988876321 2345678899999
Q ss_pred eeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeE
Q 047644 202 LSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKA 276 (314)
Q Consensus 202 L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l 276 (314)
|++.++.. .+ . ....-..++|+.|+++ ++.. ....+ ...-..|+|++|++++.... ...+..+++|+.+
T Consensus 155 L~l~~n~l-~~~~~-~~~~~~l~~L~~L~Ls--~n~l-~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 155 LKMAGNSF-QENFL-PDIFTELRNLTFLDLS--QCQL-EQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp EECTTCEE-GGGEE-CSCCTTCTTCCEEECT--TSCC-CEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred EECCCCcc-ccccc-hhHHhhCcCCCEEECC--CCCc-CCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 99998865 22 1 1111134789999986 3322 11100 11124689999999987654 2246778999999
Q ss_pred EEeEEeccCCCCCCCChHHHhhcC-CCceEEEeecCCC
Q 047644 277 VYYVMFSEWPPIDRRPPVQLLAGM-TKTKCLTLSAGVL 313 (314)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~ll~~~-~~l~~L~l~~~~l 313 (314)
++..+.... .....+..+ ++++.|.|++|.+
T Consensus 229 ~L~~N~l~~------~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 229 DYSLNHIMT------SKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCB------CSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCCcc------cCHHHHHhhhccCCEEEccCCCe
Confidence 987653321 122234556 4899999999876
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.59 E-value=3.6e-08 Score=92.42 Aligned_cols=175 Identities=12% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCC-CcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTN-HLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~ 201 (314)
.++++|+++.+.......+ ..+++|++|.++++...+ .|.....+++|+.|+|.+..++. ..+...+..++.|+.
T Consensus 302 ~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred CceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 4688998887754332221 467999999999986655 34466789999999999998853 345567889999999
Q ss_pred eeeeeeeccCC-CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc--eeecCCCCceeEEE
Q 047644 202 LSLTVYFTAAN-PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVY 278 (314)
Q Consensus 202 L~L~~c~~~~~-~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l 278 (314)
|+++++.. .+ ++.......++|+.|+++ +|.. ....+..+ .++|++|++++..... ..+..+++|+++++
T Consensus 379 L~Ls~N~l-~~~l~~~~~~~l~~L~~L~Ls--~N~l-~~~~~~~l---~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 379 LDISQNSV-SYDEKKGDCSWTKSLLSLNMS--SNIL-TDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp EECCSSCC-BCCGGGCSCCCCTTCCEEECC--SSCC-CGGGGGSC---CTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred EECCCCcC-CcccccchhccCccCCEEECc--CCCC-Ccchhhhh---cccCCEEECCCCcccccchhhhcCCCCCEEEC
Confidence 99999976 33 311112245799999997 3432 22112222 2799999999986542 23458999999999
Q ss_pred eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
..+..... ....+..+++++.|.+++|.+.
T Consensus 452 ~~N~l~~l------~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 452 ASNQLKSV------PDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CSSCCCCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCCcc------CHHHhccCCcccEEECcCCCCc
Confidence 77533211 1115788999999999999873
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.58 E-value=7.5e-08 Score=89.11 Aligned_cols=166 Identities=14% Similarity=0.106 Sum_probs=115.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+... .++. +..+++|++|.++++...+.+ ....+++|++|+|.++.+++-. . +..++.|++|+
T Consensus 68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred cCCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccCh-hhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence 58899998876533 2333 667899999999888766665 3678899999999988874432 2 78899999999
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEe
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMF 282 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~ 282 (314)
+.+|.. .++ .. .-..++|+.|.+. ..... ... ....++|++|++++..... ..+..+++|+.+++..+.
T Consensus 141 l~~n~l-~~~-~~-~~~l~~L~~L~l~---~~~~~---~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 141 LSSNTI-SDI-SA-LSGLTSLQQLSFG---NQVTD---LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEE-CCC-GG-GTTCTTCSEEEEE---ESCCC---CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCcc-CCC-hh-hccCCcccEeecC---CcccC---chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc
Confidence 999976 444 22 1245788888886 22111 111 2356899999999876542 236778999999887653
Q ss_pred ccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
... ... +..+++++.|.++.|.++
T Consensus 211 l~~------~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 211 ISD------ITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCC------CGG--GGGCTTCCEEECCSSCCC
T ss_pred ccc------ccc--ccccCCCCEEECCCCCcc
Confidence 211 111 678999999999998763
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.57 E-value=1.6e-08 Score=93.27 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+|+.+.... ..+..+..+++|++|.|+++.....++ ....+++|++|+|.+..++.- ....+..+|.|+.|
T Consensus 99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEE
Confidence 366777776553221 122344456777777777765544442 244567777777776655311 12234566666666
Q ss_pred eeeeee
Q 047644 203 SLTVYF 208 (314)
Q Consensus 203 ~L~~c~ 208 (314)
++.+|.
T Consensus 177 ~l~~~~ 182 (452)
T 3zyi_A 177 DLGELK 182 (452)
T ss_dssp ECCCCT
T ss_pred eCCCCC
Confidence 666653
No 24
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.57 E-value=1.2e-08 Score=89.49 Aligned_cols=153 Identities=15% Similarity=0.065 Sum_probs=84.4
Q ss_pred CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcC-CCcHHHHh--cCCccccceeeeeeeccCCCCCcEE----Ee
Q 047644 149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPT-NHLPHNLF--SRCPCLQHLSLTVYFTAANPASNLI----IS 220 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~ll--~~cp~Le~L~L~~c~~~~~~~~~~~----i~ 220 (314)
++|++|.|+++.....+ .....+++|+.|+|.+..+. ...+..-+ ..++.|++|++.++.. ... ..+. -.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~-~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETP-SGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCH-HHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cch-HHHHHHHHhc
Confidence 56666666665444433 23445666777777666542 11111122 5677777777777654 211 1111 12
Q ss_pred cCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcC
Q 047644 221 SATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGM 300 (314)
Q Consensus 221 ~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~ 300 (314)
.++|+.|+++ ++ ......+.......++|++|++++.....+.-.-.++|+.+++....... . .. +..+
T Consensus 227 l~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~-----~--p~-~~~l 295 (312)
T 1wwl_A 227 RVQLQGLDLS--HN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-----N--PS-PDEL 295 (312)
T ss_dssp TCCCSEEECT--TS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS-----C--CC-TTTS
T ss_pred CCCCCEEECC--CC-cCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCC-----C--hh-HhhC
Confidence 3688888886 22 22221111222346889999988875542211111678888876543221 1 11 6789
Q ss_pred CCceEEEeecCCCC
Q 047644 301 TKTKCLTLSAGVLH 314 (314)
Q Consensus 301 ~~l~~L~l~~~~l~ 314 (314)
++++.|.+++|.|.
T Consensus 296 ~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 296 PQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEEEEECTTCTTT
T ss_pred CCCCEEeccCCCCC
Confidence 99999999999873
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.56 E-value=1.5e-08 Score=88.87 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=124.0
Q ss_pred CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCc
Q 047644 96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRL 174 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L 174 (314)
..|+.+.+....-.....+...+. .-..+++|++..+......+|..+..+++|++|.|+++... ..|.....+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 458888887654322001111111 12578999998422223356777788899999999888655 344356688999
Q ss_pred ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccC-CCCCcEEEec-CCcceEEEEeeeeCCCCCCCcceEEEEcCCc
Q 047644 175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAA-NPASNLIISS-ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNL 252 (314)
Q Consensus 175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~~~i~~-~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L 252 (314)
++|+|.+..++.. +...+..+|.|++|++.++.. . ..+..+. .. +.|+.|+++ ++.. ....+.. +...+|
T Consensus 128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~-~l~~~L~~L~L~--~N~l-~~~~~~~--~~~l~L 199 (313)
T 1ogq_A 128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI-SGAIPDSYG-SFSKLFTSMTIS--RNRL-TGKIPPT--FANLNL 199 (313)
T ss_dssp CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC-EEECCGGGG-CCCTTCCEEECC--SSEE-EEECCGG--GGGCCC
T ss_pred CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc-cCcCCHHHh-hhhhcCcEEECc--CCee-eccCChH--HhCCcc
Confidence 9999998887422 334567889999999998854 2 1101111 22 378888886 2211 1000100 111239
Q ss_pred cEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 253 EFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 253 ~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
++|++++.... ...+..++.|+.+++..+.... .... +..+++++.|.++.|.+
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------BGGG-CCCCTTCCEEECCSSCC
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------ecCc-ccccCCCCEEECcCCcc
Confidence 99999886543 2346788999999987654321 1222 67889999999999876
No 26
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.56 E-value=3.7e-08 Score=85.46 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=79.0
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
.+++|++..+.... ++ .+..+++|+.|.|+++...+.+ ....+++|+.|+|.+..+++ +.. +..++.|++|++
T Consensus 47 ~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 47 SIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp TCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred cccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence 55666555443221 12 2444566666666665544443 24556666666666665533 222 456666666666
Q ss_pred eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEec
Q 047644 205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFS 283 (314)
Q Consensus 205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~ 283 (314)
.+|.. .++ ..+ -..++|+.|+++ ++.... . ...-..++|++|++++..... ..+..++.|+.+++..+..
T Consensus 120 ~~n~i-~~~-~~l-~~l~~L~~L~l~--~n~l~~---~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 120 EHNGI-SDI-NGL-VHLPQLESLYLG--NNKITD---I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TTSCC-CCC-GGG-GGCTTCCEEECC--SSCCCC---C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCcC-CCC-hhh-cCCCCCCEEEcc--CCcCCc---c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence 66643 322 111 123556666664 222111 1 111134566666666554331 1245566666666654321
Q ss_pred cCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644 284 EWPPIDRRPPVQLLAGMTKTKCLTLSAGV 312 (314)
Q Consensus 284 ~~~~~~~~~~~~ll~~~~~l~~L~l~~~~ 312 (314)
. .+. -+..+++++.|.+++|.
T Consensus 191 ~-------~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 S-------DLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp C-------BCG-GGTTCTTCSEEEEEEEE
T ss_pred C-------CCh-hhccCCCCCEEECcCCc
Confidence 1 111 25566666666666554
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.55 E-value=3.3e-09 Score=101.36 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=25.4
Q ss_pred ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
.+++|+.|.++++.....|.....+++|+.|+|.+..+....-...+..++.|+.|++.+|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 3444444444444333333233444555555555444421111122334445555555444
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=2.2e-07 Score=85.94 Aligned_cols=187 Identities=14% Similarity=0.085 Sum_probs=128.8
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcce
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKT 176 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 176 (314)
.++.+.+....-..... + ....++++|+++.+... .++. +..+++|++|.++++...+.+ ....+++|++
T Consensus 69 ~L~~L~Ls~n~l~~~~~----~--~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 138 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP----L--KNLTKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNR 138 (466)
T ss_dssp TCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred CCCEEECCCCccCCchh----h--hccccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCE
Confidence 48888887554222211 1 11258999999877533 2333 678899999999998776665 4778999999
Q ss_pred EEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEE
Q 047644 177 FHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLD 256 (314)
Q Consensus 177 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~ 256 (314)
|+|.++.+.+-. -+..++.|++|.+.+.. .+. .. .-..++|+.|+++ +|..... .. .-..++|++|+
T Consensus 139 L~l~~n~l~~~~---~~~~l~~L~~L~l~~~~--~~~-~~-~~~l~~L~~L~l~--~n~l~~~---~~-l~~l~~L~~L~ 205 (466)
T 1o6v_A 139 LELSSNTISDIS---ALSGLTSLQQLSFGNQV--TDL-KP-LANLTTLERLDIS--SNKVSDI---SV-LAKLTNLESLI 205 (466)
T ss_dssp EEEEEEEECCCG---GGTTCTTCSEEEEEESC--CCC-GG-GTTCTTCCEEECC--SSCCCCC---GG-GGGCTTCSEEE
T ss_pred EECCCCccCCCh---hhccCCcccEeecCCcc--cCc-hh-hccCCCCCEEECc--CCcCCCC---hh-hccCCCCCEEE
Confidence 999999985532 27899999999997542 222 11 1245789999997 4432211 11 23679999999
Q ss_pred eecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 257 ITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 257 l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
++++.... ..++.+++|+++++..+... .+ ..+..+++++.|.++.|.+.
T Consensus 206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~~-~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 206 ATNNQISDITPLGILTNLDELSLNGNQLK-------DI-GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCC-------CC-GGGGGCTTCSEEECCSSCCC
T ss_pred ecCCcccccccccccCCCCEEECCCCCcc-------cc-hhhhcCCCCCEEECCCCccc
Confidence 99876542 23677899999999764221 11 34788999999999998763
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.55 E-value=1.8e-09 Score=102.19 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=88.8
Q ss_pred ccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCc
Q 047644 145 IYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATL 224 (314)
Q Consensus 145 ~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L 224 (314)
+..+++|++|.++++.....++....+++|++|+|.++.+........+..++.|++|++.+|.. .+......-..++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-cccchhhhhcCCcC
Confidence 34455666666666544433323455667777777666653222223456677777777777643 11100001134677
Q ss_pred ceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCC
Q 047644 225 KTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301 (314)
Q Consensus 225 k~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~ 301 (314)
+.|+++ +|... ........-.+++|++|+++++..... .+.++++|+.+++..+... ......+.+++
T Consensus 448 ~~L~l~--~n~l~-~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~ 518 (570)
T 2z63_A 448 EVLKMA--GNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK------SVPDGIFDRLT 518 (570)
T ss_dssp CEEECT--TCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCT
T ss_pred cEEECc--CCcCc-cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC------CCCHHHhhccc
Confidence 777775 33211 000111122467888888888755422 4567788888888764221 12234567889
Q ss_pred CceEEEeecCCC
Q 047644 302 KTKCLTLSAGVL 313 (314)
Q Consensus 302 ~l~~L~l~~~~l 313 (314)
+++.|.+++|.+
T Consensus 519 ~L~~L~l~~N~~ 530 (570)
T 2z63_A 519 SLQKIWLHTNPW 530 (570)
T ss_dssp TCCEEECCSSCB
T ss_pred CCcEEEecCCcc
Confidence 999999999876
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.53 E-value=3.9e-08 Score=80.17 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=83.1
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcc
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLK 175 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~ 175 (314)
.++.+.+....-.+-.. + ....++++|++..+.. ..+..+..+++|++|.++++...+ .+.....+++|+
T Consensus 45 ~L~~L~l~~n~i~~l~~----l--~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 45 SLTYITLANINVTDLTG----I--EYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp TCCEEEEESSCCSCCTT----G--GGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CccEEeccCCCccChHH----H--hcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 37888887554222111 1 1125899999998843 223456778999999999986654 344667899999
Q ss_pred eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEE
Q 047644 176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLE 230 (314)
Q Consensus 176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~ 230 (314)
.|+|.++.+++... ..+..+|.|++|++.+|....++ .. --..++|+.|+++
T Consensus 116 ~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~-~~-l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 116 LLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI-MP-LKTLPELKSLNIQ 167 (197)
T ss_dssp EEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC-GG-GGGCSSCCEEECT
T ss_pred EEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcccc-Hh-hcCCCCCCEEECC
Confidence 99999999865444 45679999999999999631444 21 1134567777775
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.52 E-value=1e-07 Score=89.85 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=92.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
..+++|+++.+... ...+..+..+++|++|.|+++...+.+ .....+++|++|+|.+..++.. ....+..++.|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence 36677777665422 122344556777777777777555443 2455677777777777766432 23345677777777
Q ss_pred eeeeeeccCCCC-CcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEE
Q 047644 203 SLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVY 278 (314)
Q Consensus 203 ~L~~c~~~~~~~-~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l 278 (314)
+++++.. .+.. ....-..++|+.|+++ ++...... +....-..++|++|++++..... ..+.+++.|+++++
T Consensus 104 ~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~--~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 104 NLMGNPY-QTLGVTSLFPNLTNLQTLRIG--NVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp ECTTCCC-SSSCSSCSCTTCTTCCEEEEE--ESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred ECCCCcc-cccchhhhhhccCCccEEECC--CCcccccc-CHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 7777754 2210 0111134577777776 33211110 00001135667777777654331 23445566666665
Q ss_pred eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..... ......+...+++++.|.++.|.+
T Consensus 180 ~~n~~------~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 180 HLSES------AFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp ECSBS------TTHHHHHHHSTTTBSEEEEESCBC
T ss_pred ccCcc------cccchhhHhhcccccEEEccCCcc
Confidence 54311 111222334556666666655543
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.51 E-value=4.9e-08 Score=83.62 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=114.1
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
+++.++++... -..+|..+ .++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ...++..++.|++|+
T Consensus 17 ~~~~l~~~~~~--l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKK--LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSC--CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCC--CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEE
Confidence 34555554432 22345433 2689999999987666653 466899999999999887432 234567899999999
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
|.++.. ..+.....-..++|+.|+++ ++.. ... .....-..++|++|++++.....+ .+..+++|+++++..
T Consensus 92 l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKL-QALPIGVFDQLVNLAELRLD--RNQL-KSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCC-CCCCTTTTTTCSSCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcC-CcCCHhHcccccCCCEEECC--CCcc-Cee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 999865 33311111245789999997 3322 211 111112568999999998765422 367789999999976
Q ss_pred EeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+... ......+.++++++.|.|+.|.|+
T Consensus 167 n~l~------~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 167 NQLK------RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp SCCS------CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCc------EeChhHhccCCCcCEEECCCCcCC
Confidence 4221 112234678999999999998763
No 33
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.50 E-value=2.2e-08 Score=95.66 Aligned_cols=59 Identities=19% Similarity=0.042 Sum_probs=25.9
Q ss_pred cccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 146 YRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
..+++|+.|.|+++.+.+.+ ....+++|+.|+|.++.+.+- . -+..||.|+.|+|++|.
T Consensus 84 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSC
T ss_pred ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCc
Confidence 34445555555444333333 334444555555544444221 1 13344555555554443
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.50 E-value=1.2e-08 Score=94.05 Aligned_cols=179 Identities=17% Similarity=0.055 Sum_probs=102.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+|+.+.... ..+..+..+++|+.|.|+++.....+ .....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus 75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence 578999988765322 22445667899999999998665554 3556799999999999887432 23446789999999
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCC---c------ceE------------EEEcCCccEEEeeccc
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN---Q------HTV------------TIVAPNLEFLDITDDL 261 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~---~------~~l------------~~~~p~L~~L~l~~~~ 261 (314)
+|.++.. ..+.....-..++|+.|++. .|....... . ..+ ....++|++|++++..
T Consensus 153 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~--~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 153 WLRNNPI-ESIPSYAFNRVPSLMRLDLG--ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp ECCSCCC-CEECTTTTTTCTTCCEEECC--CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred ECCCCCc-ceeCHhHHhcCCcccEEeCC--CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 9999854 21100000123566666664 222211000 0 000 0123455555555543
Q ss_pred ccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 262 AVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 262 ~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
... ..+.++++|+++++..+... ......+.++++++.|.|+.|.|
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVS------LIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCC
T ss_pred CcccCcccccCccCCCEEEeCCCcCc------eECHHHhcCCCCCCEEECCCCcC
Confidence 321 23445556665555433111 11123456778888888888765
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.50 E-value=2.5e-08 Score=91.61 Aligned_cols=153 Identities=17% Similarity=0.069 Sum_probs=71.0
Q ss_pred cCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644 148 SITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT 226 (314)
Q Consensus 148 c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~ 226 (314)
+++|+.|.|+++.....+. ....+++|+.|+|.++..-..--...+.++++|++|+|.+|.. ..+ .. ....++|+.
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~-~~-~~~l~~L~~ 211 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REI-PN-LTPLIKLDE 211 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSC-CC-CTTCSSCCE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccc-cc-cCCCcccCE
Confidence 4455555554443333321 2334455555555443210000112234455555555555543 222 11 012345666
Q ss_pred EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644 227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT 303 (314)
Q Consensus 227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l 303 (314)
|+++ ++.. .... ....-..++|++|.+++..... ..+.++++|+.+++..+... ......+..++++
T Consensus 212 L~Ls--~N~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L 281 (440)
T 3zyj_A 212 LDLS--GNHL-SAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT------LLPHDLFTPLHHL 281 (440)
T ss_dssp EECT--TSCC-CEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC------CCCTTTTSSCTTC
T ss_pred EECC--CCcc-CccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC------ccChhHhccccCC
Confidence 6664 2211 1000 0001134667777766654432 23456677777777654221 1223456778888
Q ss_pred eEEEeecCCC
Q 047644 304 KCLTLSAGVL 313 (314)
Q Consensus 304 ~~L~l~~~~l 313 (314)
+.|.|++|++
T Consensus 282 ~~L~L~~Np~ 291 (440)
T 3zyj_A 282 ERIHLHHNPW 291 (440)
T ss_dssp CEEECCSSCE
T ss_pred CEEEcCCCCc
Confidence 8888888875
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.50 E-value=2e-08 Score=89.51 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=23.8
Q ss_pred ecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 267 VHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 267 ~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+..+++|+++++..+... .....++.++++++.|.|++|.+
T Consensus 273 l~~l~~L~~L~Ls~N~l~------~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLK------SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred HhcccCCCEEECCCCCCC------ccCHHHHhcCCCCCEEEeeCCCc
Confidence 345667777766544221 11122346777788888877765
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.50 E-value=4.3e-08 Score=83.08 Aligned_cols=153 Identities=18% Similarity=0.080 Sum_probs=75.0
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
++|+.|.|+++.....++ ....+++|+.|+|.+..++.. ....+..++.|++|+|.++.. ..+.....-..++|+.|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEE
Confidence 456666666654444331 234566666666666555321 123345566666666666543 22200000123556666
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCce
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTK 304 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~ 304 (314)
+++ ++ ..... .....-..++|++|++++.....+ .+..+++|+.+++...... ......+..+++++
T Consensus 113 ~L~--~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 113 YLG--GN-QLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ------SVPHGAFDRLGKLQ 182 (251)
T ss_dssp ECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCTTCC
T ss_pred EcC--CC-cCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC------ccCHHHHhCCCCCC
Confidence 664 22 11110 011111356677777766543311 2455677777776554221 11223456677777
Q ss_pred EEEeecCCC
Q 047644 305 CLTLSAGVL 313 (314)
Q Consensus 305 ~L~l~~~~l 313 (314)
.|.|++|.+
T Consensus 183 ~L~l~~N~~ 191 (251)
T 3m19_A 183 TITLFGNQF 191 (251)
T ss_dssp EEECCSCCB
T ss_pred EEEeeCCce
Confidence 777777765
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.49 E-value=2.8e-08 Score=91.29 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=114.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+|+.+.... -.+..+..+++|++|.|+++.....+. ....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus 88 ~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEe
Confidence 478888887764322 122345567899999999886666653 456789999999988876321 12346788999999
Q ss_pred eeeeeeccCCCCCcEE----EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCcee
Q 047644 203 SLTVYFTAANPASNLI----ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHK 275 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~----i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~ 275 (314)
+|.+|.. . ..+. -..++|+.|+++ ++...... . ....++|++|++++..... ..+.++++|++
T Consensus 166 ~l~~~~~---l-~~i~~~~~~~l~~L~~L~L~--~n~l~~~~---~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 166 DLGELKR---L-SYISEGAFEGLSNLRYLNLA--MCNLREIP---N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp ECCCCTT---C-CEECTTTTTTCSSCCEEECT--TSCCSSCC---C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCC---c-ceeCcchhhcccccCeecCC--CCcCcccc---c-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 9998754 2 1111 134788888886 33322111 1 2356889999999876542 34677899999
Q ss_pred EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+++..+... ......+.++++++.|.|+.|.|.
T Consensus 236 L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 236 LWMIQSQIQ------VIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp EECTTCCCC------EECTTSSTTCTTCCEEECTTSCCC
T ss_pred EECCCCcee------EEChhhhcCCCCCCEEECCCCCCC
Confidence 988754221 112234678999999999998763
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.49 E-value=1.3e-07 Score=89.53 Aligned_cols=183 Identities=12% Similarity=0.085 Sum_probs=124.4
Q ss_pred HHHHHHH-hCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcC-CCcHHHH
Q 047644 116 YWVSSAI-SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPT-NHLPHNL 192 (314)
Q Consensus 116 ~w~~~~~-~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l 192 (314)
.|+.... ..++++|+++.+.......+ ..+++|++|.++++...+ .|.....+++|+.|+|.+..++ -..+...
T Consensus 322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 322 EALYSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhhccCcceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh
Confidence 3444333 24789999988754332221 467899999999986655 3445678999999999999884 3455667
Q ss_pred hcCCccccceeeeeeeccCC-CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce--eecC
Q 047644 193 FSRCPCLQHLSLTVYFTAAN-PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY--AVHQ 269 (314)
Q Consensus 193 l~~cp~Le~L~L~~c~~~~~-~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~--~~~~ 269 (314)
+..++.|++|+++++.. .+ ++.......++|+.|+++ ++. .....+..+ .++|++|++++.....+ .+..
T Consensus 399 ~~~l~~L~~L~l~~N~l-~~~~~~~~~~~l~~L~~L~l~--~n~-l~~~~~~~l---~~~L~~L~L~~N~l~~ip~~~~~ 471 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSL-NSHAYDRTCAWAESILVLNLS--SNM-LTGSVFRCL---PPKVKVLDLHNNRIMSIPKDVTH 471 (562)
T ss_dssp TTTCTTCCEEECTTSCC-BSCCSSCCCCCCTTCCEEECC--SSC-CCGGGGSSC---CTTCSEEECCSSCCCCCCTTTTS
T ss_pred hcCCCCCCEEECCCCcC-CCccChhhhcCcccCCEEECC--CCC-CCcchhhhh---cCcCCEEECCCCcCcccChhhcC
Confidence 88999999999999976 33 311222345899999997 332 222112211 17999999998865422 2447
Q ss_pred CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 270 LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 270 ~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+++|+.+++..+....- ....+..+++++.|.+++|.+.
T Consensus 472 l~~L~~L~L~~N~l~~l------~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 472 LQALQELNVASNQLKSV------PDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SCCCSEEECCSSCCCCC------CTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCEEECCCCCCCCC------CHHHHhcCCCCCEEEecCCCcC
Confidence 89999999976533211 1114788999999999999874
No 40
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.48 E-value=5.2e-08 Score=95.87 Aligned_cols=156 Identities=17% Similarity=0.082 Sum_probs=93.2
Q ss_pred cccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcc
Q 047644 146 YRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLK 225 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk 225 (314)
..+++|++|+|+++.....++....+++|++|+|.++.++.. +...+..|+.|++|++.+|.. .+.... ...++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l-~~~~~~--~~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCC-EESCCC--CCCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcc-cCccCc--cccCCCC
Confidence 467788888887775554332466788888888888877433 556678888888888888855 211011 1567788
Q ss_pred eEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCC
Q 047644 226 TFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTK 302 (314)
Q Consensus 226 ~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~ 302 (314)
.|++. +|.. ....+..+.-.+++|++|++++.... ...++++++|+++++..+...+ ......+..+++
T Consensus 273 ~L~L~--~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----~ip~~~l~~l~~ 344 (768)
T 3rgz_A 273 YLSLA--ENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-----ELPMDTLLKMRG 344 (768)
T ss_dssp EEECC--SSEE-EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-----ECCHHHHTTCTT
T ss_pred EEECc--CCcc-CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-----cCCHHHHhcCCC
Confidence 88876 3321 10111111112477888888776432 2345677777777776543221 112234566777
Q ss_pred ceEEEeecCCC
Q 047644 303 TKCLTLSAGVL 313 (314)
Q Consensus 303 l~~L~l~~~~l 313 (314)
++.|.++.|.+
T Consensus 345 L~~L~Ls~n~l 355 (768)
T 3rgz_A 345 LKVLDLSFNEF 355 (768)
T ss_dssp CCEEECCSSEE
T ss_pred CCEEeCcCCcc
Confidence 77777766643
No 41
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=4.6e-08 Score=83.63 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=24.8
Q ss_pred cCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 148 SITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 148 c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
+++|+.|.++++...+.+ ....+++|+.|+|.+..+++-. . +..++.|+.|+++++.
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc
Confidence 344444444444333333 3334444555555444442211 1 3444555555555443
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.47 E-value=1.9e-08 Score=95.24 Aligned_cols=82 Identities=17% Similarity=0.051 Sum_probs=40.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--------------------CCcCCCCcceEEeeeEE
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--------------------DGVCFPRLKTFHLMLQQ 183 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--------------------~~~~~~~L~~L~L~~~~ 183 (314)
.++++|++..+... .+|..+..+ +|+.|.++++.....|. ....+++|+.|+|.+..
T Consensus 282 ~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccch--hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 46777777665422 345545555 66666666654443321 11344555555554444
Q ss_pred cCC-CcHHHHhcCCccccceeeeeee
Q 047644 184 PTN-HLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 184 ~~~-~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
++. ......+..++.|++|++.+|.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~ 384 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNG 384 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred cCccccccccccccCccCEEECCCCc
Confidence 311 1112334455666666666553
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.47 E-value=1.9e-08 Score=95.99 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=43.6
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
++++|+++.+... .+|..+..+++|++|.++++...+.+ .....+++|+.|.|.+..+........+..++.|++|+
T Consensus 279 ~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 5566666554322 45555566666777766666443332 23445666666666665442111122345566666666
Q ss_pred eeeee
Q 047644 204 LTVYF 208 (314)
Q Consensus 204 L~~c~ 208 (314)
+.++.
T Consensus 357 l~~n~ 361 (606)
T 3t6q_A 357 LSHDD 361 (606)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 66653
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.46 E-value=1.1e-08 Score=89.68 Aligned_cols=198 Identities=12% Similarity=0.003 Sum_probs=122.7
Q ss_pred CCeeEEEEEe-ccC--CCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCC
Q 047644 96 SSVEKFSLRC-SYL--RSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCF 171 (314)
Q Consensus 96 ~~l~~l~l~~-~~~--~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~ 171 (314)
+.++.+.+.. ..- .-+..+ ....++++|+++.+... ..+|..+..+++|++|.|+++... ..|.....+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred CCCCeeeCCCCCcccccCChhH------hcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 3488888873 321 111211 11258999999887532 356777788899999999998665 344456789
Q ss_pred CCcceEEeeeEEcCCCcHHHHhcCCc-cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC
Q 047644 172 PRLKTFHLMLQQPTNHLPHNLFSRCP-CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP 250 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p 250 (314)
++|++|+|.+..++.. +..-+..++ .|++|++.++.. .+. ..-.+...+|+.|+++ ++.. ... .....-..+
T Consensus 149 ~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l-~~~-~~~~~~~l~L~~L~Ls--~N~l-~~~-~~~~~~~l~ 221 (313)
T 1ogq_A 149 PNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRL-TGK-IPPTFANLNLAFVDLS--RNML-EGD-ASVLFGSDK 221 (313)
T ss_dssp TTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEE-EEE-CCGGGGGCCCSEEECC--SSEE-EEC-CGGGCCTTS
T ss_pred CCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCee-ecc-CChHHhCCcccEEECc--CCcc-cCc-CCHHHhcCC
Confidence 9999999998877322 233345666 999999998865 211 0001122238888886 2211 111 111122567
Q ss_pred CccEEEeeccccc--ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 251 NLEFLDITDDLAV--SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 251 ~L~~L~l~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+|++|++++.... ...+..+++|+++++..+... +.+...+..+++++.|.|+.|.+
T Consensus 222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEE
T ss_pred CCCEEECCCCceeeecCcccccCCCCEEECcCCccc------CcCChHHhcCcCCCEEECcCCcc
Confidence 8888888876443 122566788888888654321 12334567788888888888754
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.46 E-value=3.1e-08 Score=87.39 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|++..+.... ..|..+..+++|++|.|+++.....|. ..+++|++|+|.+..++.. ....+..++.|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCS--SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCCccCh--hhcccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence 356666665543221 123444455666666666654444431 1225555555555544221 123344555555555
Q ss_pred eeee
Q 047644 204 LTVY 207 (314)
Q Consensus 204 L~~c 207 (314)
+.++
T Consensus 152 l~~n 155 (330)
T 1xku_A 152 LGTN 155 (330)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5544
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.46 E-value=1.9e-07 Score=86.24 Aligned_cols=160 Identities=14% Similarity=0.022 Sum_probs=84.4
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
++++|+++.+..... + +..+++|++|.++++...+. ....+++|+.|+|.+..++.-. +..++.|++|++
T Consensus 86 ~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l 155 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDC 155 (457)
T ss_dssp TCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEEC
T ss_pred CCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee--cCCCCCcCCEEECCCCccceec----cccCCcCCEEEC
Confidence 455555544432221 1 33455555555555543333 2345555566655555553211 445566666666
Q ss_pred eeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEec
Q 047644 205 TVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFS 283 (314)
Q Consensus 205 ~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~ 283 (314)
.+|.... .+.+ ..++|+.|+++ ++. ...- . .-..++|+.|.+++.......+..++.|+.+++..+..
T Consensus 156 ~~n~~~~----~~~~~~l~~L~~L~ls--~n~-l~~l--~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 156 HLNKKIT----KLDVTPQTQLTTLDCS--FNK-ITEL--D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp TTCSCCC----CCCCTTCTTCCEEECC--SSC-CCCC--C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCC
T ss_pred CCCCccc----ccccccCCcCCEEECC--CCc-ccee--c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcc
Confidence 6553211 1111 23566666665 222 1111 1 12456777777777665545567777777777765422
Q ss_pred cCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 284 EWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 284 ~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
. . +. +..+++++.|.++.|.++
T Consensus 225 ~-----~--ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 225 T-----E--ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp S-----C--CC--CTTCTTCSEEECCSSCCS
T ss_pred c-----c--cC--ccccCCCCEEEeeCCcCC
Confidence 2 1 11 667888888888888763
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.46 E-value=1.6e-07 Score=82.69 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=127.1
Q ss_pred CCeeEEEEEeccCCC--cchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCC
Q 047644 96 SSVEKFSLRCSYLRS--LGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFP 172 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~--~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~ 172 (314)
..++.+.+....-.. ...+ . ...++++|+++.+... .+|..+. ++|++|.++++.....++ ....++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~ 145 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAF----A--PLVKLERLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN 145 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTT----T--TCTTCCEEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred CCCCEEECCCCcCCeeCHHHh----c--CCCCCCEEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence 348888876543211 1111 0 1257999999876533 4555443 799999999986655542 346789
Q ss_pred CcceEEeeeEEcCC-CcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCC
Q 047644 173 RLKTFHLMLQQPTN-HLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPN 251 (314)
Q Consensus 173 ~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~ 251 (314)
+|+.|+|.+..+.. ......+..++.|++|++.++.. ..++..+ .++|+.|+++ ++.. ....+ ...-..++
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~---~~~L~~L~l~--~n~l-~~~~~-~~~~~l~~ 217 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHLD--GNKI-TKVDA-ASLKGLNN 217 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSC---CTTCSEEECT--TSCC-CEECT-GGGTTCTT
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccc---cccCCEEECC--CCcC-CccCH-HHhcCCCC
Confidence 99999999987732 23345567899999999999865 4331112 2789999986 2321 11101 11125689
Q ss_pred ccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 252 LEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 252 L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
|++|++++...... .+..+++|+++++..+... .+...+..+++++.|.++.|.|.
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcCC
Confidence 99999998765422 4677899999999765322 22233678999999999999764
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.45 E-value=1e-07 Score=88.41 Aligned_cols=179 Identities=14% Similarity=0.044 Sum_probs=91.9
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+++.+.... ..+..+..+++|+.|.|+++.....+ .....+++|++|+|.++.++.- ....+..++.|+.|
T Consensus 104 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 181 (477)
T 2id5_A 104 SNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVL 181 (477)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEE
T ss_pred CCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEE
Confidence 466777776553221 22334555677777777776443332 2445677888888887776432 23456777888888
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCC----------------------CCcceEEEEcCCccEEEeecc
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSA----------------------PNQHTVTIVAPNLEFLDITDD 260 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~----------------------~~~~~l~~~~p~L~~L~l~~~ 260 (314)
+|.++.. ........-..++|+.|+++ +|..... .-+....-..++|++|++++.
T Consensus 182 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 182 RLRHLNI-NAIRDYSFKRLYRLKVLEIS--HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEESCCC-CEECTTCSCSCTTCCEEEEE--CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred eCCCCcC-cEeChhhcccCcccceeeCC--CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 8877643 11100001123455566554 2321110 000000112355555555554
Q ss_pred cccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 261 LAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 261 ~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.... ..+.++++|+++++..+... ......+.++++++.|.|+.|.|
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLA------VVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCS------EECTTTBTTCTTCCEEECCSSCC
T ss_pred cCCccChhhccccccCCEEECCCCccc------eECHHHhcCcccCCEEECCCCcC
Confidence 3321 12445556666555433111 11123456788888888888765
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.45 E-value=5.3e-08 Score=83.53 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=108.6
Q ss_pred ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644 147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT 226 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~ 226 (314)
..++|+.|.+.++.....+ ....+++|+.|+|.+..+++- . .+..++.|++|++.+|.. .+......-..++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCE
Confidence 4689999999998766665 677899999999999988542 2 567999999999999965 4331111124578999
Q ss_pred EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644 227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT 303 (314)
Q Consensus 227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l 303 (314)
|+++ ++... .. .....-..++|++|++++...... .+..+++|+.+++..+... ......+.+++++
T Consensus 114 L~L~--~n~l~-~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L 183 (272)
T 3rfs_A 114 LVLV--ENQLQ-SL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------SLPEGVFDKLTQL 183 (272)
T ss_dssp EECT--TSCCC-CC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTC
T ss_pred EECC--CCcCC-cc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC------ccCHHHhcCCccC
Confidence 9996 34321 11 111122568999999999865422 2578899999999875332 2233457789999
Q ss_pred eEEEeecCCCC
Q 047644 304 KCLTLSAGVLH 314 (314)
Q Consensus 304 ~~L~l~~~~l~ 314 (314)
+.|.++.|.+.
T Consensus 184 ~~L~L~~N~l~ 194 (272)
T 3rfs_A 184 KDLRLYQNQLK 194 (272)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 99999998763
No 50
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=6.9e-09 Score=82.60 Aligned_cols=96 Identities=7% Similarity=0.044 Sum_probs=58.4
Q ss_pred ccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEE-cCCCcHHHHhcC---CccccceeeeeeeccCCCC
Q 047644 140 PLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSR---CPCLQHLSLTVYFTAANPA 214 (314)
Q Consensus 140 ~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~~~~~~~ 214 (314)
.+|..-.....|++|++++|...+.- ....++++|++|+|.+|. ++|.++..+... ||.||+|+|++|...+|.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~- 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK- 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-
Confidence 45543334567888888887543321 123467888888888885 488888877763 778888888888643332
Q ss_pred CcEEE-ecCCcceEEEEeeeeCCCC
Q 047644 215 SNLII-SSATLKTFVLEVMYCSHSS 238 (314)
Q Consensus 215 ~~~~i-~~~~Lk~L~i~~~~c~~~~ 238 (314)
+...+ .+++|++|+++ +|...+
T Consensus 131 Gl~~L~~~~~L~~L~L~--~c~~It 153 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLS--DLPGVK 153 (176)
T ss_dssp HHHHGGGCTTCCEEEEE--SCTTCC
T ss_pred HHHHHhcCCCCCEEECC--CCCCCC
Confidence 11111 34666666665 554433
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.44 E-value=1.5e-08 Score=88.76 Aligned_cols=155 Identities=13% Similarity=0.042 Sum_probs=89.3
Q ss_pred ccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEc-CCCcHH--HHhcCCccccceeeeeeeccCCCCCcE----E
Q 047644 147 RSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQP-TNHLPH--NLFSRCPCLQHLSLTVYFTAANPASNL----I 218 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~--~ll~~cp~Le~L~L~~c~~~~~~~~~~----~ 218 (314)
.+++|++|.|+++.....+ .....+++|++|+|.+..+ ++..+. ..+..+|.|++|+|++|.. ..+ ... .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETP-TGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCH-HHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-Cch-HHHHHHHH
Confidence 4567777777776554443 2344677777777777764 221121 1124677788888887754 222 111 1
Q ss_pred EecCCcceEEEEeeeeCCCCCCCcceEEE--EcCCccEEEeecccccceeecCCCCceeEEEeEEeccCCCCCCCChHHH
Q 047644 219 ISSATLKTFVLEVMYCSHSSAPNQHTVTI--VAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQL 296 (314)
Q Consensus 219 i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~--~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~l 296 (314)
-..++|+.|+++ ++ ......+..+.. ..|+|++|++++.....+.-.-.++|+.+++..+...+ + ..
T Consensus 221 ~~l~~L~~L~Ls--~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-------~-~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLS--HN-SLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-------A-PQ 289 (310)
T ss_dssp HHTCCCSSEECT--TS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-------C-CC
T ss_pred hcCCCCCEEECC--CC-CCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-------C-ch
Confidence 134788888886 22 222221111111 23789999988876543222223788888887653321 1 12
Q ss_pred hhcCCCceEEEeecCCCC
Q 047644 297 LAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 297 l~~~~~l~~L~l~~~~l~ 314 (314)
+..+++++.|.|++|.|.
T Consensus 290 ~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTSCCCCSCEECSSTTTS
T ss_pred hhhCCCccEEECcCCCCC
Confidence 578899999999999873
No 52
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.44 E-value=2.9e-09 Score=96.16 Aligned_cols=183 Identities=14% Similarity=0.032 Sum_probs=108.9
Q ss_pred CCceEEEEEecCCC--ccccCCc-------ccccCCeeEEEEcceeecc-----cCCCCcCCCCcceEEeeeEEcCCC--
Q 047644 124 RNVREIEIDLRDHE--RIPLPAS-------IYRSITLEVLRLRSYFALT-----LPPDGVCFPRLKTFHLMLQQPTNH-- 187 (314)
Q Consensus 124 ~~l~~L~l~~~~~~--~~~l~~~-------~~~c~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~-- 187 (314)
+++++|+|+.+... ...+|.. +..+++|++|+|+++.+.+ .+.....+++|++|+|.++.+++.
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 47888888765322 1122332 2567888999888875543 221335678899998888887432
Q ss_pred -cHHHHhcCC---------ccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCCCCcce----EEEE
Q 047644 188 -LPHNLFSRC---------PCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSAPNQHT----VTIV 248 (314)
Q Consensus 188 -~l~~ll~~c---------p~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~~~~~~----l~~~ 248 (314)
.+...+..+ |.|++|.+.+|.. .+. .... -..++|+.|.++ +|.. ...+... ....
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~l~~~l~~~~~L~~L~L~--~n~l-~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENG-SMKEWAKTFQSHRLLHTVKMV--QNGI-RPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-TGG-GHHHHHHHHHHCTTCCEEECC--SSCC-CHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC-CcH-HHHHHHHHHHhCCCcCEEECc--CCCC-CHhHHHHHHHHHhhc
Confidence 234444444 8889998888864 311 1111 145688888886 3422 1111000 1125
Q ss_pred cCCccEEEeeccccc-------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhc--CCCceEEEeecCCC
Q 047644 249 APNLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAG--MTKTKCLTLSAGVL 313 (314)
Q Consensus 249 ~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~--~~~l~~L~l~~~~l 313 (314)
.++|++|+++++... ...+..++.|+.+++..+...... ...+...+.. +++++.|.|+.|.+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG--AAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH--HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh--HHHHHHHHhhccCCCeEEEECcCCcC
Confidence 688999999887652 123567888998888655221000 0113345543 89999999998876
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.44 E-value=1.8e-08 Score=87.81 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=103.5
Q ss_pred CCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644 124 RNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL 199 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 199 (314)
.++++|++..+... .++.. +..+++|++|.|+++..... +.....+++|+.|+|.+..+.. +..-+..++.|
T Consensus 28 ~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 46778877766432 45544 34567888888877643321 1133457888888887776532 22225677888
Q ss_pred cceeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc----ceeecCCCCc
Q 047644 200 QHLSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV----SYAVHQLPSL 273 (314)
Q Consensus 200 e~L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~----~~~~~~~p~L 273 (314)
++|++.++.. .+. .. ..-..++|+.|+++ ++.. ... .....-..++|++|++++.... ...+..++.|
T Consensus 104 ~~L~l~~n~l-~~~-~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 104 EHLDFQHSNL-KQM-SEFSVFLSLRNLIYLDIS--HTHT-RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CEEECTTSEE-ESS-TTTTTTTTCTTCCEEECT--TSCC-EEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CEEECCCCcc-ccc-ccchhhhhccCCCEEECC--CCcC-Ccc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 8888887755 322 11 11234678888875 2321 100 0011113578888888876543 2346678888
Q ss_pred eeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 274 HKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 274 ~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+.+++..+... ......+.++++++.|.++.|.+
T Consensus 178 ~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 178 TFLDLSQCQLE------QLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp CEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCC
T ss_pred CEEECCCCCcC------CcCHHHhcCCCCCCEEECCCCcc
Confidence 88888654221 11223467889999999998876
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.42 E-value=3.4e-07 Score=84.54 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=93.7
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+.... ++ +..+++|++|.++++...+. ....+++|+.|+|.+..++.-. +..++.|++|.
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEE
Confidence 456666666554322 12 44566677777766654444 2456667777777666663321 55667777777
Q ss_pred eeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEe
Q 047644 204 LTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMF 282 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~ 282 (314)
+.++.. .++ .+ ..++|+.|+++ +|....... ....++|++|++++.....+.+..++.|+.+++..+.
T Consensus 134 l~~N~l-~~l----~l~~l~~L~~L~l~--~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 134 CARNTL-TEI----DVSHNTQLTELDCH--LNKKITKLD----VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CTTSCC-SCC----CCTTCTTCCEEECT--TCSCCCCCC----CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC
T ss_pred CCCCcc-cee----ccccCCcCCEEECC--CCCcccccc----cccCCcCCEEECCCCccceeccccCCCCCEEECcCCc
Confidence 776654 322 12 34567777665 332211111 1145778888887776554556777788887776542
Q ss_pred ccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
... + -+..+++++.|.++.|.++
T Consensus 203 l~~-------~--~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 203 ITK-------L--DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp CSC-------C--CCTTCTTCSEEECCSSCCS
T ss_pred CCe-------e--ccccCCCCCEEECcCCccc
Confidence 211 1 1667888999998888763
No 55
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.42 E-value=1.2e-07 Score=82.12 Aligned_cols=147 Identities=18% Similarity=0.116 Sum_probs=108.1
Q ss_pred ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644 147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT 226 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~ 226 (314)
.+++|+.|.++++...+.+ ....+++|+.|+|.+..+++-. . +..++.|+.|.+.++.. .++ .. --..++|+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~-~~-l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDL-SS-LKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCG-GG-GTTCTTCCE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCC-hh-hccCCCCCE
Confidence 5689999999998776666 6778999999999999985432 2 78999999999999975 444 22 124578999
Q ss_pred EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceE
Q 047644 227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKC 305 (314)
Q Consensus 227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~ 305 (314)
|+++ ++.... ... ....++|++|++++..... ..+..+++|+.+++..+.... +.. +..+++++.
T Consensus 117 L~L~--~n~i~~---~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 117 LSLE--HNGISD---ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-------IVP-LAGLTKLQN 182 (291)
T ss_dssp EECT--TSCCCC---CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CGG-GTTCTTCCE
T ss_pred EECC--CCcCCC---Chh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-------chh-hcCCCccCE
Confidence 9996 332221 111 2257999999999876542 346788999999997653211 112 889999999
Q ss_pred EEeecCCCC
Q 047644 306 LTLSAGVLH 314 (314)
Q Consensus 306 L~l~~~~l~ 314 (314)
|.++.|.|+
T Consensus 183 L~L~~N~i~ 191 (291)
T 1h6t_A 183 LYLSKNHIS 191 (291)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 999999764
No 56
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.42 E-value=1.5e-08 Score=96.72 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=12.3
Q ss_pred HhhcCCCceEEEeecCCC
Q 047644 296 LLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 296 ll~~~~~l~~L~l~~~~l 313 (314)
.+.++++++.|.|+.|.+
T Consensus 492 ~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred hhcccccCCEEECCCCcC
Confidence 356677777777777655
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.41 E-value=8.3e-08 Score=88.96 Aligned_cols=178 Identities=13% Similarity=0.031 Sum_probs=103.7
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+|+.+... ...|..+..+++|++|.|+++.....|. ....+++|+.|+|.+..+... ....+..++.|++|
T Consensus 56 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence 46788877665322 1224456667888888888776655553 245678888888877765221 12345678888888
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEe
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYY 279 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~ 279 (314)
++.++.. ........-..++|+.|+++ ++.. ... .....-..++|+.|++.+.... ...+..+++|+.+++.
T Consensus 134 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 134 EVGDNDL-VYISHRAFSGLNSLEQLTLE--KCNL-TSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp EECCTTC-CEECTTSSTTCTTCCEEEEE--SCCC-SSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred ECCCCcc-ceeChhhccCCCCCCEEECC--CCcC-ccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 8887643 11100001134688888887 3322 111 1111225688888888876544 2346678888888887
Q ss_pred EEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 280 VMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 280 ~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
.+.... .+........+++.|.|+.|.|+
T Consensus 209 ~~~~~~------~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 209 HWPYLD------TMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp CCTTCC------EECTTTTTTCCCSEEEEESSCCC
T ss_pred CCcccc------ccCcccccCccccEEECcCCccc
Confidence 542111 11111223348999999988763
No 58
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.40 E-value=4.7e-08 Score=96.14 Aligned_cols=173 Identities=15% Similarity=0.106 Sum_probs=114.7
Q ss_pred CCceEEEEEecCCCccccCC--cccccCCeeEEEEcceeeccc-CC-CCcCCCCcceEEeeeEEcCCCcHH--HHhcCCc
Q 047644 124 RNVREIEIDLRDHERIPLPA--SIYRSITLEVLRLRSYFALTL-PP-DGVCFPRLKTFHLMLQQPTNHLPH--NLFSRCP 197 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~--~~~~c~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp 197 (314)
.++++|+|+.+... ..+|. .+..+++|++|+|+++..... |. ....+++|++|+|.++.++..... ..+.+|+
T Consensus 100 ~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 47888888776422 23444 677889999999988855433 21 226789999999988887332222 2378999
Q ss_pred cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCce
Q 047644 198 CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLH 274 (314)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~ 274 (314)
.|++|++.+|.. .+. ... -..++|+.|+++ +|... .. ... .-..++|++|++++.... ...+.++++|+
T Consensus 179 ~L~~L~Ls~n~l-~~~-~~~-~~l~~L~~L~Ls--~n~l~-~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 179 ELKHLAISGNKI-SGD-VDV-SRCVNLEFLDVS--SNNFS-TG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TCCEEECCSSEE-ESC-CBC-TTCTTCCEEECC--SSCCC-SC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCEEECCCCcc-ccc-CCc-ccCCcCCEEECc--CCcCC-CC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 999999999876 332 111 355789999987 44332 11 122 336789999999987654 23567889999
Q ss_pred eEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 275 KAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 275 ~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.+++..+...+. ... ..+++++.|.++.|.+
T Consensus 251 ~L~Ls~n~l~~~---~~~-----~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 251 LLNISSNQFVGP---IPP-----LPLKSLQYLSLAENKF 281 (768)
T ss_dssp EEECCSSCCEES---CCC-----CCCTTCCEEECCSSEE
T ss_pred EEECCCCcccCc---cCc-----cccCCCCEEECcCCcc
Confidence 998876533211 111 1788999999988754
No 59
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=5.5e-08 Score=77.37 Aligned_cols=85 Identities=8% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEe-----cCCcceEEEEeeeeCCCCCCCcceEE
Q 047644 172 PRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIIS-----SATLKTFVLEVMYCSHSSAPNQHTVT 246 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~-----~~~Lk~L~i~~~~c~~~~~~~~~~l~ 246 (314)
..|+.|+|++|.+++.++..+ ++||.|++|+|++|...+|. ....+. +++|++|+++ +|...++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls--~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEII--SCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEE--SCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcC--CCCcCCHHHHHHHh
Confidence 456666666666655555554 46666666666666432322 111121 2356666665 56555554444433
Q ss_pred EEcCCccEEEeeccc
Q 047644 247 IVAPNLEFLDITDDL 261 (314)
Q Consensus 247 ~~~p~L~~L~l~~~~ 261 (314)
.+|+|++|+++++.
T Consensus 137 -~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 137 -HFRNLKYLFLSDLP 150 (176)
T ss_dssp -GCTTCCEEEEESCT
T ss_pred -cCCCCCEEECCCCC
Confidence 45666666666654
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.39 E-value=8.7e-08 Score=82.21 Aligned_cols=176 Identities=9% Similarity=0.015 Sum_probs=81.2
Q ss_pred CceEEEEEecCCCccccC-CcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 125 NVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
++++|+++.+... .++ ..+..+++|++|.|+++.....+ .....+++|+.|.|.+..+..-. ...+..++.|++|
T Consensus 53 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 129 (276)
T 2z62_A 53 ELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKEL 129 (276)
T ss_dssp TCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEE
T ss_pred CCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEE
Confidence 5666666544321 222 23344566666666665443332 23445666666666655542210 1114556666666
Q ss_pred eeeeeeccCCCC-CcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCcc----EEEeecccccce--eecCCCCcee
Q 047644 203 SLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLE----FLDITDDLAVSY--AVHQLPSLHK 275 (314)
Q Consensus 203 ~L~~c~~~~~~~-~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~----~L~l~~~~~~~~--~~~~~p~L~~ 275 (314)
++.++.. .... ...--..++|+.|+++ ++.. ...... ..-..++|+ +|++++.....+ .....++|++
T Consensus 130 ~l~~n~l-~~~~l~~~~~~l~~L~~L~Ls--~N~l-~~~~~~-~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 130 NVAHNLI-QSFKLPEYFSNLTNLEHLDLS--SNKI-QSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp ECCSSCC-CCCCCCGGGGGCTTCCEEECC--SSCC-CEECGG-GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred ECcCCcc-ceecCchhhccCCCCCEEECC--CCCC-CcCCHH-HhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 6666543 2210 0000123566666664 2211 100000 000122333 455554433211 1112336666
Q ss_pred EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+++..+.. .......+.++++++.|.|++|.+.
T Consensus 205 L~L~~n~l------~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 205 LALDTNQL------KSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EECCSSCC------SCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred EECCCCce------eecCHhHhcccccccEEEccCCccc
Confidence 66654322 1122345678999999999998763
No 61
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.39 E-value=5e-08 Score=77.29 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=69.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+......+|..+..+++|+.|.++++...+. .....+++|+.|+|.+..+... +..++..+|.|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence 46888888777544335666667788888888888865554 3666788888888888887443 556666788888888
Q ss_pred eeeeeccCCCCCc--EEEecCCcceEEEE
Q 047644 204 LTVYFTAANPASN--LIISSATLKTFVLE 230 (314)
Q Consensus 204 L~~c~~~~~~~~~--~~i~~~~Lk~L~i~ 230 (314)
+.+|.. .++ .. .--..++|+.|+++
T Consensus 102 Ls~N~l-~~~-~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 102 LSGNKL-KDI-STLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CBSSSC-CSS-GGGGGGSSCSCCCEEECC
T ss_pred ccCCcc-Ccc-hhHHHHhcCCCCCEEEee
Confidence 888865 433 11 11123455555554
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.39 E-value=5.1e-07 Score=81.38 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=35.6
Q ss_pred CCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 250 PNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 250 p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
++|++|++++.... ...+..++.|+++++..+.. .......+.++++++.|.++.|.+
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL------EKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC------CEEESGGGTTCSSCCEEECCSSCC
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcC------CCcChhHccccccCCEEECCCCcC
Confidence 56666666665433 22356677777777765422 111234567788888888888765
No 63
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=1e-07 Score=75.45 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=39.6
Q ss_pred CCeeEEEEcceeec--ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 149 ITLEVLRLRSYFAL--TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 149 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
++|+.|.++++... ..|.....+++|+.|+|.++.++.. ..+..++.|+.|++++|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l 83 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI 83 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC
Confidence 67788888777655 4553446677788888877776442 4456777777777777754
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.36 E-value=5.7e-07 Score=81.09 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=43.0
Q ss_pred EcCCccEEEeecccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 248 VAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 248 ~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
..|+|++|++++..... ..+..++.|+++++..+... .+......+++++.|.++.|.++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-------EEECSSSCCTTCCEEECCSSCCC
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-------ccCcccCCCCCCCEEECCCCcce
Confidence 56899999999876542 34677899999998764221 12223467899999999998763
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.36 E-value=2.3e-07 Score=87.46 Aligned_cols=178 Identities=13% Similarity=0.124 Sum_probs=103.0
Q ss_pred CCceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeeccc----CCCCcCCCCcceEEeeeEEcCCCc-HHHHhcCCc
Q 047644 124 RNVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTL----PPDGVCFPRLKTFHLMLQQPTNHL-PHNLFSRCP 197 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp 197 (314)
..++++++..+.. ..+|..++ .+++|+.|+|+++...+. +.....+++|+.|+|.+..++.-. ....+..++
T Consensus 310 ~~L~~L~l~~n~l--~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 310 EKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp TTCCEEEEESSCC--CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred ccceEEEeccCcc--ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 4677777776643 25565554 478999999988755431 113567888999999888874422 235678889
Q ss_pred cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCC-----cc----------eEEEEcCCccEEEeecccc
Q 047644 198 CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN-----QH----------TVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 198 ~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~-----~~----------~l~~~~p~L~~L~l~~~~~ 262 (314)
.|++|++++|.. ..+ ....-..++|+.|+++ ++......+ .. .+.-..|+|++|++++...
T Consensus 388 ~L~~L~Ls~N~l-~~l-p~~~~~~~~L~~L~Ls--~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 388 NLTSLDISRNTF-HPM-PDSCQWPEKMRFLNLS--STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463 (549)
T ss_dssp TCCEEECTTCCC-CCC-CSCCCCCTTCCEEECT--TSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCC-ccC-ChhhcccccccEEECC--CCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence 999999988855 333 1111123456666554 222110000 00 0112456666666666543
Q ss_pred cce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 263 VSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 263 ~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..+ ....+++|+.+++..+.. .......+..+++++.|.+++|.+
T Consensus 464 ~~ip~~~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 464 KTLPDASLFPVLLVMKISRNQL------KSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SSCCCGGGCTTCCEEECCSSCC------CCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CcCCCcccCccCCEEecCCCcc------CCcCHHHHhcCcccCEEEecCCCc
Confidence 311 134466667666654322 122334567788888888888875
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.35 E-value=8.9e-08 Score=88.07 Aligned_cols=85 Identities=15% Similarity=0.031 Sum_probs=59.9
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc-C--CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccc
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL-P--PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQ 200 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~-~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 200 (314)
.++++|+++.+... ...|..+..+++|++|+|+++...+. + .....+++|++|+|.+..++...-..++..++.|+
T Consensus 79 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 79 SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred ccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 57888888776532 22355666788999999988865431 2 12567889999999888875433344577889999
Q ss_pred ceeeeeeec
Q 047644 201 HLSLTVYFT 209 (314)
Q Consensus 201 ~L~L~~c~~ 209 (314)
+|++.++..
T Consensus 158 ~L~L~~n~l 166 (455)
T 3v47_A 158 VLDLTFNKV 166 (455)
T ss_dssp EEECTTCCB
T ss_pred EEeCCCCcc
Confidence 999988764
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.35 E-value=1.8e-07 Score=87.12 Aligned_cols=165 Identities=16% Similarity=0.086 Sum_probs=108.8
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
++++|+|+.+.... ..|..+..+++|+.|+|+++...+.+ ....+++|+.|+|.+..++. +..+|.|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence 78999998775332 22345667899999999988665554 36788999999999887743 123489999999
Q ss_pred eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---ee-cCCCCceeEEEeE
Q 047644 205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AV-HQLPSLHKAVYYV 280 (314)
Q Consensus 205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~-~~~p~L~~l~l~~ 280 (314)
.+|.. .+. ..-..++|+.|+++ ++.. ... .....-..++|++|++++...... .+ ..++.|+.++++.
T Consensus 107 ~~N~l-~~~---~~~~l~~L~~L~L~--~N~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 107 ANNNI-SRV---SCSRGQGKKNIYLA--NNKI-TML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CSSCC-CCE---EECCCSSCEEEECC--SSCC-CSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCCcC-CCC---CccccCCCCEEECC--CCCC-CCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 99865 322 22244788888886 3322 211 111112478999999988765422 22 3678999998876
Q ss_pred EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+.... + .-...+++++.|.|+.|.|
T Consensus 179 N~l~~-------~-~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 179 NFIYD-------V-KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp SCCCE-------E-ECCCCCTTCCEEECCSSCC
T ss_pred Ccccc-------c-cccccCCCCCEEECCCCCC
Confidence 53221 1 1122588999999999876
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.34 E-value=4.8e-08 Score=93.23 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=34.5
Q ss_pred CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644 124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL 199 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 199 (314)
.++++|++..+.... .++ ..+..+++|+.|.++++..... +.....+++|++|+|.+..+... ....+..++.|
T Consensus 325 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 402 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQL 402 (606)
T ss_dssp TTCSEEECCSCSSCC-BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTC
T ss_pred CcCCEEECCCCCccc-ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccC
Confidence 356666665543221 122 2233455555555555433221 11334455555555554433110 11223344455
Q ss_pred cceeeeee
Q 047644 200 QHLSLTVY 207 (314)
Q Consensus 200 e~L~L~~c 207 (314)
++|++.++
T Consensus 403 ~~L~l~~n 410 (606)
T 3t6q_A 403 ELLDLAFT 410 (606)
T ss_dssp SEEECTTC
T ss_pred CeEECCCC
Confidence 55555444
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.33 E-value=1.6e-07 Score=86.38 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=43.4
Q ss_pred CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeecccCCC--CcCCCCcceEEeeeEEc
Q 047644 124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTLPPD--GVCFPRLKTFHLMLQQP 184 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~ 184 (314)
.++++|++..+........ ..+..+++|++|.|+++...+.++. ...+++|+.|+|.+..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 5789999987754321111 2255679999999999876655323 56889999999998877
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.31 E-value=1.2e-07 Score=91.88 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=15.5
Q ss_pred cCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 249 APNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 249 ~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
.++|++|++++.....+ .+.++++|+.+++..
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 35555555555433211 234555555555543
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.31 E-value=2e-07 Score=82.27 Aligned_cols=173 Identities=11% Similarity=0.042 Sum_probs=88.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|++..+... ...+..+..+++|++|.|+++.....|. ..+++|++|+|.+..++.- ....+..++.|+.|+
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCS--SCCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCc--cccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence 35666666554322 1123344455666666666654444431 1125666666666555321 122345566666666
Q ss_pred eeeeecc------------------------CCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeec
Q 047644 204 LTVYFTA------------------------ANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITD 259 (314)
Q Consensus 204 L~~c~~~------------------------~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~ 259 (314)
+.++..- .+++.. ..++|+.|+++ ++.. ..... ......++|++|++++
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~--~n~i-~~~~~-~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD---LPETLNELHLD--HNKI-QAIEL-EDLLRYSKLYRLGLGH 226 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS---SCSSCSCCBCC--SSCC-CCCCT-TSSTTCTTCSCCBCCS
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCcc---ccCCCCEEECC--CCcC-CccCH-HHhcCCCCCCEEECCC
Confidence 6655330 111000 01466666665 2211 11100 1112457788888877
Q ss_pred ccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 260 DLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 260 ~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
..... ..+..+++|+++++..+... .+...+..+++++.|.++.|.|.
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCCC
Confidence 64432 23567788888887654221 12223678888999999888763
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.30 E-value=7.5e-07 Score=85.03 Aligned_cols=171 Identities=16% Similarity=0.113 Sum_probs=85.3
Q ss_pred CceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 125 NVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
++++|+|+.+... .++. .+..+++|+.|.|+++.+...|+. ...+++|+.|+|.+..++.. ....+..++.|+.|
T Consensus 100 ~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 176 (597)
T 3oja_B 100 TIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNL 176 (597)
T ss_dssp TCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEE
T ss_pred CCCEEECCCCcCC--CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEE
Confidence 5566666554321 2222 234456666666666655444422 24566666666666655221 12234556666666
Q ss_pred eeeeeeccCCCC-------CcEE---------EecCCcceEEEEeeeeCCCCCCCcceEE-EEcCCccEEEeeccccc-c
Q 047644 203 SLTVYFTAANPA-------SNLI---------ISSATLKTFVLEVMYCSHSSAPNQHTVT-IVAPNLEFLDITDDLAV-S 264 (314)
Q Consensus 203 ~L~~c~~~~~~~-------~~~~---------i~~~~Lk~L~i~~~~c~~~~~~~~~~l~-~~~p~L~~L~l~~~~~~-~ 264 (314)
+|.++.. .+.. ..+. -..++|+.|+++ ++.. ..+. ...++|++|++++.... .
T Consensus 177 ~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls--~n~l------~~~~~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 177 QLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS--HNSI------NVVRGPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp ECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC--SSCC------CEEECSCCSCCCEEECCSSCCCCC
T ss_pred ECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeecc--CCcc------cccccccCCCCCEEECCCCCCCCC
Confidence 6666543 2110 0000 011234444443 1111 0000 11256777777665433 2
Q ss_pred eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 265 YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 265 ~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..+..++.|+.+++..+.. .......+.++++++.|.|+.|.|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNEL------EKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp GGGGGCTTCSEEECCSSCC------CEEESGGGTTCSSCCEEECTTSCC
T ss_pred hhhccCCCCCEEECCCCcc------CCCCHHHhcCccCCCEEECCCCCC
Confidence 3356677888887765422 112334567888888888888765
No 73
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.30 E-value=1.2e-07 Score=83.65 Aligned_cols=111 Identities=10% Similarity=-0.052 Sum_probs=67.2
Q ss_pred ccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc--eeecCCCCce
Q 047644 197 PCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS--YAVHQLPSLH 274 (314)
Q Consensus 197 p~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~ 274 (314)
+.|++|++.++.. .+.....--..++|+.|+++ ++.. ..... ...-..|+|++|++++..... ..+..++.|+
T Consensus 193 ~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~--~N~l-~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLG--HNQI-RMIEN-GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCC--SSCC-CCCCT-TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred CCCCEEECCCCcC-CccCHHHhcCCCCCCEEECC--CCcC-CcCCh-hHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 6888999988865 33300111145789999997 3322 22111 112357899999999876542 2367889999
Q ss_pred eEEEeEEeccCCCCCCCChHH--HhhcCCCceEEEeecCCCC
Q 047644 275 KAVYYVMFSEWPPIDRRPPVQ--LLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 275 ~l~l~~~~~~~~~~~~~~~~~--ll~~~~~l~~L~l~~~~l~ 314 (314)
.+++......... ...+.. +....++++.|.+.+|.++
T Consensus 268 ~L~l~~N~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 268 VVYLHTNNITKVG--VNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp EEECCSSCCCBCC--TTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred EEECCCCCCCccC--hhHccccccccccccccceEeecCccc
Confidence 9999865332111 111111 1123678999999999763
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.30 E-value=7.6e-08 Score=83.48 Aligned_cols=174 Identities=14% Similarity=0.032 Sum_probs=98.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+.... ..+..+..+++|+.|.|+++.....+ ....+++|+.|+|.+..++. +...+..+|.|+.|+
T Consensus 31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence 467777776554321 12234555678888888777655554 33677888888887777642 333456778888888
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
+.++.. ..+.....-..++|+.|.++ ++ ..... +....-..++|+.|++++.....+ .+..+++|+.+++..
T Consensus 107 l~~N~l-~~l~~~~~~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 107 VSFNRL-TSLPLGALRGLGELQELYLK--GN-ELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCSSCC-CCCCSSTTTTCTTCCEEECT--TS-CCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcC-cccCHHHHcCCCCCCEEECC--CC-CCCcc-ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 887754 32200101133677777775 22 21111 111112457788888877654422 245677888877765
Q ss_pred EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.... .+..-+...++++.|.|++|++
T Consensus 182 N~l~-------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLY-------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCC-------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCC-------ccChhhcccccCCeEEeCCCCc
Confidence 4221 1122233456788888888765
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.29 E-value=2.1e-07 Score=88.92 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=121.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
..+++|++..+... .++ .+..+++|+.|.|+++.+.+.+ ....+++|+.|.|.++.+.+- . -+..++.|+.|+
T Consensus 43 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence 57888888766533 233 4677899999999999777766 477899999999999988442 2 467999999999
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEe
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMF 282 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~ 282 (314)
|.+|.. .++ ..+ ...++|+.|+++ .|.... . ...-.+++|+.|+++++... ...+..++.|+.++|..+.
T Consensus 116 Ls~N~l-~~l-~~l-~~l~~L~~L~Ls--~N~l~~---l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 116 LEHNGI-SDI-NGL-VHLPQLESLYLG--NNKITD---I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 186 (605)
T ss_dssp CTTSCC-CCC-GGG-GGCTTCSEEECC--SSCCCC---C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ecCCCC-CCC-ccc-cCCCccCEEECC--CCccCC---c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence 999976 444 221 245899999997 343221 1 11226799999999987654 2237889999999997653
Q ss_pred ccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.. .+ .-+..+++|+.|.|+.|.+
T Consensus 187 i~-------~l-~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 187 IS-------DL-RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CC-------BC-GGGTTCTTCSEEECCSEEE
T ss_pred CC-------CC-hHHccCCCCCEEEccCCcC
Confidence 22 12 3478899999999998764
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.29 E-value=7.5e-07 Score=88.52 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCC--CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPD--GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
+++.|+|+.+... ...|..+..+++|++|.|+++...+ .+.. ...+++|++|+|.+..++.......+..++.|++
T Consensus 74 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 5666666554322 1234455566677777776664443 1211 4466677777777666644333344566677777
Q ss_pred eeeeeee
Q 047644 202 LSLTVYF 208 (314)
Q Consensus 202 L~L~~c~ 208 (314)
|+|.++.
T Consensus 153 L~Ls~N~ 159 (844)
T 3j0a_A 153 IDFSSNQ 159 (844)
T ss_dssp EEEESSC
T ss_pred EECCCCc
Confidence 7776654
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=4.7e-07 Score=89.79 Aligned_cols=181 Identities=13% Similarity=0.060 Sum_probs=95.7
Q ss_pred CceEEEEEecCCCccccCCcccccCC-eeEEEEcceeecccCCCCc-------------------------------CCC
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSIT-LEVLRLRSYFALTLPPDGV-------------------------------CFP 172 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~-L~~L~L~~~~~~~~~~~~~-------------------------------~~~ 172 (314)
++++|+++.+... .+|..+..+++ |+.|.|+++.....|.... .++
T Consensus 596 ~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 5666666555433 45555555555 6666666654333331111 223
Q ss_pred CcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-------ecCCcceEEEEeeeeCCCCCCCcceE
Q 047644 173 RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-------SSATLKTFVLEVMYCSHSSAPNQHTV 245 (314)
Q Consensus 173 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-------~~~~Lk~L~i~~~~c~~~~~~~~~~l 245 (314)
+|+.|+|.++.++. --..++..++.|+.|+|+++.. ..++....- .+++|+.|+++ +|.. . .-+..+
T Consensus 674 ~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls--~N~L-~-~lp~~l 747 (876)
T 4ecn_A 674 NASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLR--FNKL-T-SLSDDF 747 (876)
T ss_dssp CEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECC--SSCC-C-CCCGGG
T ss_pred CcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECC--CCCC-c-cchHHh
Confidence 56666666665542 1234555778888888887754 322111100 11278888886 3322 2 111111
Q ss_pred E-EEcCCccEEEeecccccc--eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 246 T-IVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 246 ~-~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
. -..|+|+.|++++..... ..+.++++|+.+++..+.......-...+...+.++++++.|.|+.|.|
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 1 156888888888765442 3356788888888865321000000122334466788888888887765
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.29 E-value=2.1e-07 Score=81.66 Aligned_cols=181 Identities=15% Similarity=0.061 Sum_probs=118.0
Q ss_pred CcchHHHHHHHHHh--CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCC
Q 047644 110 SLGMFDYWVSSAIS--RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNH 187 (314)
Q Consensus 110 ~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 187 (314)
....+...+..... .++++|+++.+.... ..+..+..+++|+.|.|+++...+.+ ....+++|+.|+|.+..++.
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~- 94 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE- 94 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-
Confidence 33455555555443 479999998775332 12245567899999999998665554 36789999999999888743
Q ss_pred cHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee-
Q 047644 188 LPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA- 266 (314)
Q Consensus 188 ~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~- 266 (314)
+..+|.|++|++.++.. .+ ...-..++|+.|+++ ++.. ... ........++|++|++++.......
T Consensus 95 -----l~~~~~L~~L~l~~n~l-~~---~~~~~~~~L~~L~l~--~N~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 95 -----LLVGPSIETLHAANNNI-SR---VSCSRGQGKKNIYLA--NNKI-TML-RDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp -----EEECTTCCEEECCSSCC-SE---EEECCCSSCEEEECC--SSCC-CSG-GGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred -----ccCCCCcCEEECCCCcc-CC---cCccccCCCCEEECC--CCCC-CCc-cchhhhccCCCCEEECCCCCCCcccH
Confidence 12459999999999865 22 122245789999986 3322 111 1111225689999999987654221
Q ss_pred ---ecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 267 ---VHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 267 ---~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
...+++|+.+++..+.... + .-...+++++.|.++.|.|.
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~-------~-~~~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYD-------V-KGQVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCE-------E-ECCCCCTTCCEEECCSSCCC
T ss_pred HHHhhccCcCCEEECCCCcCcc-------c-ccccccccCCEEECCCCcCC
Confidence 2467899999987653211 1 11224899999999998763
No 79
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.28 E-value=5.4e-07 Score=86.69 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=73.4
Q ss_pred CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEec-------CCcceEEEEeeeeCCCCCCCc
Q 047644 170 CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISS-------ATLKTFVLEVMYCSHSSAPNQ 242 (314)
Q Consensus 170 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~-------~~Lk~L~i~~~~c~~~~~~~~ 242 (314)
.+++|+.|+|.+..++. --..++..++.|++|+|.++.. ..++....-.. ++|+.|+++ ++.. . .-+
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls--~N~l-~-~lp 504 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLR--FNKL-T-KLS 504 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECC--SSCC-C-BCC
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECc--CCcC-C-ccC
Confidence 34567777777666642 1234556678888888887754 32211111111 177888876 3322 1 111
Q ss_pred ceEE-EEcCCccEEEeecccccc--eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 243 HTVT-IVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 243 ~~l~-~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
..+. ...|+|++|++++..... ..+.++++|+.+++..+.......-...+...+..+++++.|.|+.|.|
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 1111 156788888888765432 2456678888888743220000000122333456677788888777765
No 80
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.25 E-value=9e-07 Score=84.49 Aligned_cols=170 Identities=15% Similarity=0.083 Sum_probs=111.9
Q ss_pred CCceEEEEEecCCCccccCCcc-cccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPASI-YRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~-~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|+|+.+... .+|..+ ..+++|+.|.|+++.+...++ ....+++|+.|+|.+..++... +..+|.|+.
T Consensus 123 ~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 47899998877533 556554 567899999999886665543 4567899999999888774432 344566666
Q ss_pred eeeeeeeccCC------CCCcEEE-----------ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc
Q 047644 202 LSLTVYFTAAN------PASNLII-----------SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS 264 (314)
Q Consensus 202 L~L~~c~~~~~------~~~~~~i-----------~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~ 264 (314)
|++.++.. .+ + ..+.+ ..++|+.|+++ ++.. .. . ......|+|++|++++.....
T Consensus 197 L~l~~n~l-~~l~~~~~L-~~L~ls~n~l~~~~~~~~~~L~~L~L~--~n~l-~~--~-~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 197 ANVSYNLL-STLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQ--HNNL-TD--T-AWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp EECCSSCC-SEEECCTTC-SEEECCSSCCCEEECSCCSCCCEEECC--SSCC-CC--C-GGGGGCTTCSEEECCSSCCCE
T ss_pred hhcccCcc-ccccCCchh-heeeccCCcccccccccCCCCCEEECC--CCCC-CC--C-hhhccCCCCCEEECCCCccCC
Confidence 66655432 11 1 11111 23579999997 3332 21 1 122367999999999986542
Q ss_pred ---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 265 ---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 265 ---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
..+..+++|+.+++..+... .+......+++++.|.|+.|.|.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCC-------EEECSSSCCTTCCEEECCSSCCC
T ss_pred CCHHHhcCccCCCEEECCCCCCC-------CCCcccccCCCCcEEECCCCCCC
Confidence 35678999999999764221 12233467899999999999763
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.25 E-value=1.7e-07 Score=81.30 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=112.3
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++++.... -..+|..+. ++++.|.|+++.....+ .....+++|+.|+|.+..++.-. . ...+|.|+.|+
T Consensus 11 ~l~~l~~~~~~--l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTSC--CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEE
T ss_pred CccEEECCCCC--CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEE
Confidence 45666665433 234555443 68999999998665443 25668999999999988773311 1 16889999999
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV 280 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~ 280 (314)
++++.. ..+ ....-..++|+.|+++ ++ ..... .....-..++|++|.+++..... ..+..+++|+.+++..
T Consensus 84 Ls~N~l-~~l-~~~~~~l~~L~~L~l~--~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 84 LSHNQL-QSL-PLLGQTLPALTVLDVS--FN-RLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCSSCC-SSC-CCCTTTCTTCCEEECC--SS-CCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCcC-CcC-chhhccCCCCCEEECC--CC-cCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999865 433 2211245789999986 23 22211 11112246899999999876542 2356788999999876
Q ss_pred EeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
.... ......+.++++++.|.|+.|.|+
T Consensus 158 N~l~------~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 158 NNLT------ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCS------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCC------ccCHHHhcCcCCCCEEECCCCcCC
Confidence 4322 122345678999999999999874
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.25 E-value=5.1e-07 Score=75.70 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=86.0
Q ss_pred CCceEEEEEecC-CCccccCC-cccccCCeeEEEEcc-eeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644 124 RNVREIEIDLRD-HERIPLPA-SIYRSITLEVLRLRS-YFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL 199 (314)
Q Consensus 124 ~~l~~L~l~~~~-~~~~~l~~-~~~~c~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 199 (314)
.++++|+++.+. .. .++. .+..+++|++|.+++ ......++ ....+++|+.|+|.+..++. +.. +..++.|
T Consensus 55 ~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L 129 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST 129 (239)
T ss_dssp TTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred CCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence 467777777653 21 2332 344567777777776 33333331 34467777777777777633 222 5667777
Q ss_pred c---ceeeeee-eccCCCCCcEEEecCCcc-eEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc-ccc---eeecCC
Q 047644 200 Q---HLSLTVY-FTAANPASNLIISSATLK-TFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL-AVS---YAVHQL 270 (314)
Q Consensus 200 e---~L~L~~c-~~~~~~~~~~~i~~~~Lk-~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~-~~~---~~~~~~ 270 (314)
+ .|++.++ .. ..+.....-..++|+ .|+++ ++.. .. ........++|++|++++.. ... ..+.++
T Consensus 130 ~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~--~n~l-~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 130 DIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLY--NNGF-TS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECC--SCCC-CE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ccccEEECCCCcch-hhcCcccccchhcceeEEEcC--CCCC-cc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 7 7777766 22 111000001235666 66664 1211 10 00001122577777777763 321 234556
Q ss_pred -CCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecC
Q 047644 271 -PSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAG 311 (314)
Q Consensus 271 -p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~ 311 (314)
+.|+.+++......... -..+++++.|.+..+
T Consensus 204 ~~~L~~L~l~~N~l~~l~---------~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTALP---------SKGLEHLKELIARNT 236 (239)
T ss_dssp SBCCSEEECTTCCCCCCC---------CTTCTTCSEEECTTC
T ss_pred ccCCcEEECCCCccccCC---------hhHhccCceeeccCc
Confidence 77777777643221110 015677777776654
No 83
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.23 E-value=4e-07 Score=78.21 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=35.1
Q ss_pred CcccCCCChHHHHHHhcCCChhhhh-hhhcccccccccc
Q 047644 18 EDRISCLPDSILCQILSVPPTKDAV-ATSILSPRWKHAW 55 (314)
Q Consensus 18 ~d~~~~LPd~ll~~Ils~L~~~d~~-~~~~vskrWr~l~ 55 (314)
...+..||+|++..||++||.++++ +++.|||+|+.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 4578899999999999999999999 9999999999873
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.22 E-value=5.1e-08 Score=75.60 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+......+|..+..+++|+.|.++++...+.+ ....+++|+.|+|.+..++.. +...+..+|.|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence 467777777665432356666667788888888887555442 566778888888888877443 566666788888888
Q ss_pred eeeeec
Q 047644 204 LTVYFT 209 (314)
Q Consensus 204 L~~c~~ 209 (314)
++++..
T Consensus 95 ls~N~i 100 (149)
T 2je0_A 95 LSGNKI 100 (149)
T ss_dssp CTTSCC
T ss_pred CCCCcC
Confidence 887754
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=2.7e-07 Score=85.90 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=124.7
Q ss_pred CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcc
Q 047644 96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLK 175 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~ 175 (314)
+.++.+.+....-.... ...+ ....+++.|+|+.+.... .+. +..+++|+.|+|+++.+.+.+ ..++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~--~~~~--~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~ 102 (487)
T 3oja_A 34 WNVKELDLSGNPLSQIS--AADL--APFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (487)
T ss_dssp GGCCEEECCSSCCCCCC--GGGG--TTCTTCCEEECTTSCCEE--EEE-CTTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred CCccEEEeeCCcCCCCC--HHHH--hCCCCCCEEEeeCCCCCC--Ccc-cccCCCCCEEEecCCcCCCCC----CCCCcC
Confidence 35888888765432211 0111 112589999998775332 222 667899999999999766654 238999
Q ss_pred eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccE
Q 047644 176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEF 254 (314)
Q Consensus 176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~ 254 (314)
.|+|.++.++... ...+|.|+.|+|.+|.. .+. ....+ ..++|+.|+++ ++ ......+..+.-..++|++
T Consensus 103 ~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 103 TLHAANNNISRVS----CSRGQGKKNIYLANNKI-TML-RDLDEGCRSRVQYLDLK--LN-EIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp EEECCSSCCCCEE----ECCCSSCEEEECCSSCC-CSG-GGBCGGGGSSEEEEECT--TS-CCCEEEGGGGGGGTTTCCE
T ss_pred EEECcCCcCCCCC----ccccCCCCEEECCCCCC-CCC-CchhhcCCCCCCEEECC--CC-CCCCcChHHHhhhCCcccE
Confidence 9999999884422 13579999999999975 433 22222 35789999986 22 2221111112125699999
Q ss_pred EEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 255 LDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 255 L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
|++++...... ....++.|+.++++.+...+ +..-+.++++++.|.|+.|.|.
T Consensus 174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EECTTSCCCEEECCCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCCC
T ss_pred EecCCCccccccccccCCCCCEEECCCCCCCC-------CCHhHcCCCCccEEEecCCcCc
Confidence 99999876522 24468999999997653221 1112678899999999998763
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.20 E-value=6.9e-09 Score=95.66 Aligned_cols=182 Identities=15% Similarity=0.041 Sum_probs=92.8
Q ss_pred CceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeeccc------CCCCcCCCCcceEEeeeEEcCCCc---HHHH
Q 047644 125 NVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALTL------PPDGVCFPRLKTFHLMLQQPTNHL---PHNL 192 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~---l~~l 192 (314)
++++|++..+..... .++..+..+++|++|+++++...+. +.....+++|++|+|.++.+++.+ +...
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 566666555432211 1334444566777777766633221 001124667777777777665443 4444
Q ss_pred hcCCccccceeeeeeeccCCCCCcEEE------ecCCcceEEEEeeeeCCCCCCCc---ceEEEEcCCccEEEeeccccc
Q 047644 193 FSRCPCLQHLSLTVYFTAANPASNLII------SSATLKTFVLEVMYCSHSSAPNQ---HTVTIVAPNLEFLDITDDLAV 263 (314)
Q Consensus 193 l~~cp~Le~L~L~~c~~~~~~~~~~~i------~~~~Lk~L~i~~~~c~~~~~~~~---~~l~~~~p~L~~L~l~~~~~~ 263 (314)
+..||.|++|+++++.. .+. ....+ ..++|+.|+++ +|.. +..+. ....-..++|++|++++....
T Consensus 280 l~~~~~L~~L~Ls~n~i-~~~-~~~~l~~~l~~~~~~L~~L~L~--~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 280 LRAKESLKELSLAGNEL-GDE-GARLLCETLLEPGCQLESLWVK--SCSF-TAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHCTTCCEEECTTCCC-HHH-HHHHHHHHHTSTTCCCCEEECT--TSCC-BGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HhhCCCcceEECCCCCC-chH-HHHHHHHHhccCCccceeeEcC--CCCC-chHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 55677777777776643 111 00011 12477777775 3321 11110 011113477888888776433
Q ss_pred ce---eec-----CCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 264 SY---AVH-----QLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 264 ~~---~~~-----~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
.. .+. ..+.|+++++..+...... ...+...+..+++++.|.+++|.+
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHHHhCCCccEEECCCCCC
Confidence 11 111 1567777777654211000 013455667788888888888865
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.19 E-value=3.9e-07 Score=79.90 Aligned_cols=206 Identities=12% Similarity=0.047 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcce
Q 047644 80 AAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSY 159 (314)
Q Consensus 80 ~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~ 159 (314)
..+.......... .+.++.+.+....-.... ...+. ...++++|+++.+.... .+. +..+++|++|.|+++
T Consensus 20 ~~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~--~~~~~--~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 20 SSLKQALASLRQS--AWNVKELDLSGNPLSQIS--AADLA--PFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTHHHHHHHHHTT--GGGCSEEECTTSCCCCCC--HHHHT--TCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSS
T ss_pred cchhhhHHHHhcc--CCCCCEEECcCCccCcCC--HHHhh--CCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCC
Confidence 4455555544432 234888887655422111 11121 12589999998775332 222 667899999999998
Q ss_pred eecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCC
Q 047644 160 FALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSS 238 (314)
Q Consensus 160 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~ 238 (314)
...+.+ ..++|+.|+|.+..++... ...++.|++|.+.++.. .+. ....+ ..++|+.|+++ ++ ...
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l-~~~-~~~~~~~l~~L~~L~Ls--~N-~l~ 157 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKI-TML-RDLDEGCRSRVQYLDLK--LN-EID 157 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCC-CSG-GGBCTGGGSSEEEEECT--TS-CCC
T ss_pred cccccc----CCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCC-CCc-cchhhhccCCCCEEECC--CC-CCC
Confidence 766553 3489999999988774322 23579999999999976 433 22222 35789999986 22 211
Q ss_pred CCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 239 APNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 239 ~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
...+..+.-..++|++|++++...... ....+++|+++++..+... .+..-+..+++++.|.++.|.|+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCC
T ss_pred cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-------cchhhhcccCcccEEECcCCccc
Confidence 111111112468999999999876532 2345899999999765322 12122778999999999999864
No 88
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.18 E-value=1.3e-07 Score=90.95 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCceEEEEEecCCCccccCC--cccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcc-c
Q 047644 124 RNVREIEIDLRDHERIPLPA--SIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPC-L 199 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~--~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-L 199 (314)
.++++|++..+... .+|. .+..+++|+.|.++++... ..| ....+++|+.|.|.+..++ .+..-+..++. |
T Consensus 305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence 57788888776543 5666 6677778888888777555 555 5556677777777776654 23333556676 7
Q ss_pred cceeeeeeec
Q 047644 200 QHLSLTVYFT 209 (314)
Q Consensus 200 e~L~L~~c~~ 209 (314)
++|++.++..
T Consensus 380 ~~L~Ls~N~l 389 (636)
T 4eco_A 380 ENLSFAHNKL 389 (636)
T ss_dssp CEEECCSSCC
T ss_pred cEEEccCCcC
Confidence 7777777654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.17 E-value=4.4e-09 Score=94.94 Aligned_cols=211 Identities=14% Similarity=0.028 Sum_probs=132.6
Q ss_pred CCeeEEEEEeccCCC-cchHHHH---HHHHHh--CCceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeecccC-
Q 047644 96 SSVEKFSLRCSYLRS-LGMFDYW---VSSAIS--RNVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALTLP- 165 (314)
Q Consensus 96 ~~l~~l~l~~~~~~~-~~~~~~w---~~~~~~--~~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~~~- 165 (314)
+.++.+.+....... ...+... +..+.. .++++|+|+.+..... .++..+..+++|++|.|+++.+.+..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 348988887543211 1111112 222222 5899999987754322 45666778999999999998653221
Q ss_pred ----CCCcCC---------CCcceEEeeeEEcCCCcHH---HHhcCCccccceeeeeeeccCCCCC---c---EEEecCC
Q 047644 166 ----PDGVCF---------PRLKTFHLMLQQPTNHLPH---NLFSRCPCLQHLSLTVYFTAANPAS---N---LIISSAT 223 (314)
Q Consensus 166 ----~~~~~~---------~~L~~L~L~~~~~~~~~l~---~ll~~cp~Le~L~L~~c~~~~~~~~---~---~~i~~~~ 223 (314)
.....+ ++|++|+|.++.+++..+. ..+..++.|++|++.+|.. .+. + . .--..++
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~-g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPE-GIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHH-HHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC-CHh-HHHHHHHHHhhcCCC
Confidence 011122 8999999999999766666 5667999999999999965 311 0 0 1124589
Q ss_pred cceEEEEeeeeCCCCCCC---cceEEEEcCCccEEEeecccccce-------ee--cCCCCceeEEEeEEeccCCCCCCC
Q 047644 224 LKTFVLEVMYCSHSSAPN---QHTVTIVAPNLEFLDITDDLAVSY-------AV--HQLPSLHKAVYYVMFSEWPPIDRR 291 (314)
Q Consensus 224 Lk~L~i~~~~c~~~~~~~---~~~l~~~~p~L~~L~l~~~~~~~~-------~~--~~~p~L~~l~l~~~~~~~~~~~~~ 291 (314)
|+.|+++ +|. .+..+ .....-..|+|++|+++++..... .+ +.++.|+.+++..+...... ..
T Consensus 218 L~~L~Ls--~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g--~~ 292 (386)
T 2ca6_A 218 LKVLDLQ--DNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA--VR 292 (386)
T ss_dssp CCEEECC--SSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH--HH
T ss_pred ccEEECc--CCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH--HH
Confidence 9999997 332 21100 111123679999999999865421 22 34899999999765321100 00
Q ss_pred ChHHHh-hcCCCceEEEeecCCC
Q 047644 292 PPVQLL-AGMTKTKCLTLSAGVL 313 (314)
Q Consensus 292 ~~~~ll-~~~~~l~~L~l~~~~l 313 (314)
.+...+ .++++++.|.+++|.+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhcCCCceEEEccCCcC
Confidence 244445 6789999999999976
No 90
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=5.9e-07 Score=80.25 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred HHHHHHHHHccCCCCCeeEEEEEeccCCCc----chHHHHHHHHH-hCCceEEEEEecCCC--------ccccCCccccc
Q 047644 82 FEKFVHSVLARTHPSSVEKFSLRCSYLRSL----GMFDYWVSSAI-SRNVREIEIDLRDHE--------RIPLPASIYRS 148 (314)
Q Consensus 82 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~----~~~~~w~~~~~-~~~l~~L~l~~~~~~--------~~~l~~~~~~c 148 (314)
+.+.+..+|.......++.+.+.... +++ ..+..+...+. -.++++|.+...... ...+...+..+
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~ 171 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred HHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence 33455556655555557787776433 331 12333333221 258999988542211 11233444567
Q ss_pred CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhc-CCccccceeeeeeecc--CC-----CCCcEEE-
Q 047644 149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFS-RCPCLQHLSLTVYFTA--AN-----PASNLII- 219 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~c~~~--~~-----~~~~~~i- 219 (314)
++|+.|.|+++.....+ . ...++|++|.|..+.++++.+..+.. .+|+|++|+|..+... .+ +...+..
T Consensus 172 P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 99999999887333443 2 35899999999988887777777653 7999999999643210 11 1001111
Q ss_pred ecCCcceEEEEeeeeCCCCCCCcceEE--EEcCCccEEEeecccccc-----e--eecCCCCceeEEEeEE
Q 047644 220 SSATLKTFVLEVMYCSHSSAPNQHTVT--IVAPNLEFLDITDDLAVS-----Y--AVHQLPSLHKAVYYVM 281 (314)
Q Consensus 220 ~~~~Lk~L~i~~~~c~~~~~~~~~~l~--~~~p~L~~L~l~~~~~~~-----~--~~~~~p~L~~l~l~~~ 281 (314)
..|+|+.|.+. +|... +.+...+. -.+|+|++|+++...... + .+..++.|+.+++..+
T Consensus 250 ~~p~Lr~L~L~--~~~i~-~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIV--DAEEQ-NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEE--SCTTH-HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCC--CCCCc-hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 24678888775 34321 00000000 135677777776543321 0 1133566777766544
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=2.3e-07 Score=92.03 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=7.8
Q ss_pred CCCceEEEeecCCC
Q 047644 300 MTKTKCLTLSAGVL 313 (314)
Q Consensus 300 ~~~l~~L~l~~~~l 313 (314)
|++++.|.|+.|.|
T Consensus 727 l~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 727 TYLLTTIDLRFNKL 740 (876)
T ss_dssp GGGCCEEECCSSCC
T ss_pred cCCccEEECCCCCC
Confidence 34566666665544
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.16 E-value=2.7e-08 Score=87.16 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=113.5
Q ss_pred hCCceEEEEEecCCCccccCCcc--cccCCeeEEEEcceeecccCCCCcCC-----CCcceEEeeeEEcCCCcHHHHhcC
Q 047644 123 SRNVREIEIDLRDHERIPLPASI--YRSITLEVLRLRSYFALTLPPDGVCF-----PRLKTFHLMLQQPTNHLPHNLFSR 195 (314)
Q Consensus 123 ~~~l~~L~l~~~~~~~~~l~~~~--~~c~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~l~~ll~~ 195 (314)
..++++|++..+... ..+|..+ ..+++|++|+|+++...+.|.....+ ++|++|+|.+..++.. ....+..
T Consensus 94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCC
T ss_pred cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhcc
Confidence 468999999887533 2445544 66899999999998666554333333 8999999999988442 2244678
Q ss_pred CccccceeeeeeeccCCC--CCcEE-EecCCcceEEEEeeeeCCCCCCC-cceEEEEcCCccEEEeecccccc----eee
Q 047644 196 CPCLQHLSLTVYFTAANP--ASNLI-ISSATLKTFVLEVMYCSHSSAPN-QHTVTIVAPNLEFLDITDDLAVS----YAV 267 (314)
Q Consensus 196 cp~Le~L~L~~c~~~~~~--~~~~~-i~~~~Lk~L~i~~~~c~~~~~~~-~~~l~~~~p~L~~L~l~~~~~~~----~~~ 267 (314)
++.|++|+++++...... ...+. -..++|+.|+++ ++....... ...+.-..++|++|++++..... ..+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR--NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT--TSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC--CCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 999999999998630000 00011 244789999986 332210000 01111245899999999876542 234
Q ss_pred cCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 268 HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 268 ~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
..+++|+.+++..+....- ...+. ++++.|.++.|.|+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCCC
T ss_pred hhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCCC
Confidence 5578999999876532211 11111 79999999999874
No 93
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=3.5e-07 Score=81.76 Aligned_cols=190 Identities=14% Similarity=0.092 Sum_probs=89.1
Q ss_pred chHHHHHHHHHhCCceEEEEEecCCCc-c------ccCCcccccCCeeEEEEcceeec----------ccCCCCcCCCCc
Q 047644 112 GMFDYWVSSAISRNVREIEIDLRDHER-I------PLPASIYRSITLEVLRLRSYFAL----------TLPPDGVCFPRL 174 (314)
Q Consensus 112 ~~~~~w~~~~~~~~l~~L~l~~~~~~~-~------~l~~~~~~c~~L~~L~L~~~~~~----------~~~~~~~~~~~L 174 (314)
+.+.+++.......|+.|.+..+.... . .+...+...++|+.|.+...... ++......+|+|
T Consensus 95 ~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L 174 (362)
T 2ra8_A 95 NLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL 174 (362)
T ss_dssp CHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTC
T ss_pred HHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCC
Confidence 344444444444568888887653210 0 11222233467887777543110 010011356777
Q ss_pred ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCC-CcEEE-ecCCcceEEEEeeeeCCCC--CCCc---ce-EE
Q 047644 175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPA-SNLII-SSATLKTFVLEVMYCSHSS--APNQ---HT-VT 246 (314)
Q Consensus 175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~~~i-~~~~Lk~L~i~~~~c~~~~--~~~~---~~-l~ 246 (314)
++|+|.++.. ..+.. + ..|+|++|.|..|.. .+.. ..+.. ..|+|++|+++ .+.... ..+. .. +.
T Consensus 175 ~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~--~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 175 NNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLY--VGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEE--CBCGGGTCCSCGGGTGGGSC
T ss_pred cEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEe--ccccccccchhHHHHHHHHh
Confidence 7777766421 11111 1 266777777766643 2110 01111 35777777775 221111 1001 01 11
Q ss_pred -EEcCCccEEEeecccccc----e--eecCCCCceeEEEeEEeccCCCCCCCC---hHHHhhcCCCceEEEeecCCC
Q 047644 247 -IVAPNLEFLDITDDLAVS----Y--AVHQLPSLHKAVYYVMFSEWPPIDRRP---PVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 247 -~~~p~L~~L~l~~~~~~~----~--~~~~~p~L~~l~l~~~~~~~~~~~~~~---~~~ll~~~~~l~~L~l~~~~l 313 (314)
-.+|+|++|.+.++.... . ....+|.|+.++|+.+... ... +...+..+++++.|.|+.|.|
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~-----d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-----DEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB-----HHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC-----hHHHHHHHhhcccCCcceEEECCCCcC
Confidence 135777777776654320 0 1124677777777543110 111 222235578888888877754
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.13 E-value=4.8e-06 Score=79.69 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=75.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+... .+|. .+++|++|+|+++.+...| . .+++|+.|+|.+..++.- -...+.|+.|+
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLP-V--LPPGLLELSIFSNPLTHL-----PALPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCC-C--CCTTCCEEEECSCCCCCC-----CCCCTTCCEEE
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCC-C--CCCCCCEEECcCCcCCCC-----CCCCCCcCEEE
Confidence 46777777665432 3333 3467777777776555544 2 667777777777665321 11456777777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~ 281 (314)
+.++.. ..+ ....++|+.|+++ +|.. .. . .-..++|+.|.+++.....+. ..+++|+.++++.+
T Consensus 128 L~~N~l-~~l----p~~l~~L~~L~Ls--~N~l-~~--l---~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 128 IFGNQL-TSL----PVLPPGLQELSVS--DNQL-AS--L---PALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN 191 (622)
T ss_dssp CCSSCC-SCC----CCCCTTCCEEECC--SSCC-SC--C---CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred CCCCCC-CcC----CCCCCCCCEEECc--CCcC-CC--c---CCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC
Confidence 777654 333 1123777777776 3322 11 1 113467777777776554333 45677888877654
No 95
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.12 E-value=6e-06 Score=78.10 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=12.6
Q ss_pred HHhhcCCCceEEEeecCCC
Q 047644 295 QLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 295 ~ll~~~~~l~~L~l~~~~l 313 (314)
..+.++++++.|.++.|.+
T Consensus 397 ~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp HTTTTCTTCCEEECTTSCC
T ss_pred hhhcCCCCCCEEECCCCcC
Confidence 4456677777777776654
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.12 E-value=1.5e-06 Score=72.44 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred cccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcE
Q 047644 139 IPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNL 217 (314)
Q Consensus 139 ~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~ 217 (314)
..+|..+ .++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- -...+..++.|+.|+|+++.. ..+....
T Consensus 32 ~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSAV 107 (229)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChhH
Confidence 3445433 278888888887665553 2455788888888888877321 123456788888888888754 3220110
Q ss_pred EEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 218 IISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 218 ~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
.-..++|+.|+++ .+....- +.. ....++|++|++++.....+ .+..+++|+.+++..
T Consensus 108 ~~~l~~L~~L~Ls---~N~l~~l-p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 108 FDRLVHLKELFMC---CNKLTEL-PRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTTCTTCCEEECC---SSCCCSC-CTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred hCcchhhCeEecc---CCccccc-Ccc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 1134567777765 2221110 111 12446666666666543311 244455666555543
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.12 E-value=1e-05 Score=80.36 Aligned_cols=103 Identities=15% Similarity=0.025 Sum_probs=52.6
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
++++|+++.+.... ..+..+..+++|+.|.|+++.....+ .....+++|+.|+|.+..++.. ....+..+|.|+.|+
T Consensus 267 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 267 SVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYID 344 (844)
T ss_dssp CCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEE
T ss_pred CccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEE
Confidence 56666665443221 12333444567777777666444432 2345666777777766665321 122345666777777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLE 230 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~ 230 (314)
+.++.. ..+.....-..++|+.|+++
T Consensus 345 L~~N~i-~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 345 LQKNHI-AIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CCSCCC-CCCCSSCSCSCCCCCEEEEE
T ss_pred CCCCCC-CccChhhhcCCCCCCEEECC
Confidence 766643 22201111124566666665
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.10 E-value=3.9e-07 Score=70.52 Aligned_cols=59 Identities=15% Similarity=0.011 Sum_probs=44.1
Q ss_pred cCCeeEEEEcceeec--ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 148 SITLEVLRLRSYFAL--TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 148 c~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.++|+.|.++++... ..|.....+++|+.|+|.++.++.. ..+..++.|+.|+++++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence 367888888888665 4554556788888888888877443 5567888888888888765
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.10 E-value=2.1e-06 Score=70.31 Aligned_cols=127 Identities=17% Similarity=0.077 Sum_probs=70.1
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
++|++|.++++.....++ ....+++|++|+|.+..++.- ....+..++.|++|+|.++.. ..+.....-..++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEE
Confidence 578888888776555542 245678888888887766421 233456778888888887754 32201101134567777
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEE
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~ 281 (314)
+++ ++ ..... .....-..++|++|++++..... ..+..++.|+.+++...
T Consensus 106 ~L~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALN--TN-QLQSL-PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EcC--CC-cCccc-CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 765 22 11111 11111235677777777654331 12455667776666543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.09 E-value=9.6e-06 Score=76.77 Aligned_cols=156 Identities=17% Similarity=0.048 Sum_probs=99.5
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+... .+| ..+++|+.|.|+++.+...|. ...+|+.|+|.+..++. +.. .++.|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE---LPASLKHLDVDNNQLTM--LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch---hhcCCCEEECCCCcCCC--CCC---cCccccEEe
Confidence 46888888776543 444 346888888888886666653 22288888888887733 222 678999999
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee-ecCCCCc-------ee
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA-VHQLPSL-------HK 275 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~-~~~~p~L-------~~ 275 (314)
|+++.. ..+ .. ..++|+.|+++ ++. ... ... +. ++|++|++++.....+. +.+ +| +.
T Consensus 147 Ls~N~l-~~l-p~---~l~~L~~L~Ls--~N~-L~~--lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 147 ADNNQL-TML-PE---LPTSLEVLSVR--NNQ-LTF--LPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIF 211 (571)
T ss_dssp CCSSCC-SCC-CC---CCTTCCEEECC--SSC-CSC--CCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEE
T ss_pred CCCCcc-CcC-CC---cCCCcCEEECC--CCC-CCC--cch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceE
Confidence 998866 444 22 45789999987 332 222 222 22 89999999987544211 111 45 66
Q ss_pred EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644 276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH 314 (314)
Q Consensus 276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~ 314 (314)
+++..+.. ..+..-+..+++++.|.|++|.|.
T Consensus 212 L~Ls~N~l-------~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 212 FRCRENRI-------THIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EECCSSCC-------CCCCGGGGGSCTTEEEECCSSSCC
T ss_pred EecCCCcc-------eecCHHHhcCCCCCEEEeeCCcCC
Confidence 66654322 123333455999999999999873
No 101
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=6e-07 Score=76.40 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred ccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644 20 RISCLPDSILCQILSVPPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 20 ~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l 54 (314)
.++.||+|++.+||+||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999964
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.07 E-value=1.6e-08 Score=93.12 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=68.3
Q ss_pred CeeEEEEcceeecc-----cCCCCcCCCCcceEEeeeEEcCCCcHHHHh----cCCccccceeeeeeeccCCCCCcEEE-
Q 047644 150 TLEVLRLRSYFALT-----LPPDGVCFPRLKTFHLMLQQPTNHLPHNLF----SRCPCLQHLSLTVYFTAANPASNLII- 219 (314)
Q Consensus 150 ~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll----~~cp~Le~L~L~~c~~~~~~~~~~~i- 219 (314)
+|++|+|+++...+ .+.....+++|++|+|.++.+++..+..+. ...+.|++|++.+|.. .+. ....+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~-~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAA-SCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BGG-GHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC-CHH-HHHHHH
Confidence 46666665553321 111233455666666665555333333222 2244566666665543 211 10000
Q ss_pred ----ecCCcceEEEEeeeeCCCCCCCcceEE----EEcCCccEEEeecccccc-------eeecCCCCceeEEEeEEecc
Q 047644 220 ----SSATLKTFVLEVMYCSHSSAPNQHTVT----IVAPNLEFLDITDDLAVS-------YAVHQLPSLHKAVYYVMFSE 284 (314)
Q Consensus 220 ----~~~~Lk~L~i~~~~c~~~~~~~~~~l~----~~~p~L~~L~l~~~~~~~-------~~~~~~p~L~~l~l~~~~~~ 284 (314)
..++|+.|+++ ++. ....+...+. ...++|++|+++++.... ..+..++.|+++++..+...
T Consensus 164 ~~l~~~~~L~~L~L~--~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 164 SVLRAKPDFKELTVS--NND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHCTTCCEEECC--SSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHhhCCCCCEEECc--CCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 23566666665 221 1111011110 013466777766654331 12334566776666543211
Q ss_pred CCCCCCCCh----HHHhhcCCCceEEEeecCCC
Q 047644 285 WPPIDRRPP----VQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 285 ~~~~~~~~~----~~ll~~~~~l~~L~l~~~~l 313 (314)
...+ ..+...+++++.|.++.|.+
T Consensus 241 -----~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 241 -----DVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp -----HHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred -----hHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 0011 12223567777777777654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.06 E-value=1.6e-06 Score=71.80 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=63.3
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ....+.+++.|+.|+|+++.. ..+.....-..++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence 577888887775555542 445677888888877765321 123356677888888877754 32201111123556666
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEe
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYY 279 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~ 279 (314)
+++ ++ ...... ....-..++|++|++++.....+ .+..+++|+.+++.
T Consensus 110 ~L~--~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 110 LLN--AN-KINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp ECC--SS-CCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ECC--CC-CCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 664 11 111100 00011345666666665543311 23445555555544
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.05 E-value=1.6e-06 Score=81.19 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=27.4
Q ss_pred CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
++|++|+|+++...+.+ .....+++|++|+|.+..++.. ....+..++.|++|+|+++.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence 45555555555433332 1233455555555555544221 12234455555555555553
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.05 E-value=1.2e-06 Score=73.92 Aligned_cols=150 Identities=17% Similarity=0.085 Sum_probs=75.7
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.+++|++..+.... ..+..+..+++|++|.|+++...+.++ ....+++|+.|+|.+..++.- ....+..++.|++|+
T Consensus 36 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEE
Confidence 55666665543221 112234456677777777665544432 235567777777776665321 123445667777777
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV 280 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~ 280 (314)
|.++.. ..+.....-..++|+.|+++ ++ ..... .....-..++|++|++++..... ..+..+++|+.+++..
T Consensus 114 L~~N~l-~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 114 LGGNQL-KSLPSGVFDRLTKLKELRLN--TN-QLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCSSCC-CCCCTTTTTTCTTCCEEECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCcC-CCcChhHhccCCcccEEECc--CC-cCCcc-CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 776644 22201101124566676665 22 21111 00011134677777777654431 1345667777777665
Q ss_pred E
Q 047644 281 M 281 (314)
Q Consensus 281 ~ 281 (314)
.
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 4
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.05 E-value=6.3e-07 Score=86.73 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=12.6
Q ss_pred HhhcCCCceEEEeecCCC
Q 047644 296 LLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 296 ll~~~~~l~~L~l~~~~l 313 (314)
.+.++++++.|.++.|.|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l 572 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNL 572 (680)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HcccccCcceeECCCCCC
Confidence 456777777777777655
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.04 E-value=1.8e-06 Score=75.27 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=100.3
Q ss_pred hCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc---c--CCCCcCCCCcceEEeeeEEcCC--CcHHHHhcC
Q 047644 123 SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT---L--PPDGVCFPRLKTFHLMLQQPTN--HLPHNLFSR 195 (314)
Q Consensus 123 ~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~---~--~~~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~ 195 (314)
..++++|+++.+... ...+..+..+++|++|+|+++.... . +.....+++|++|+|.++.++. .....++..
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 358999999887642 2233455678999999999985432 2 1133689999999999998842 122235688
Q ss_pred CccccceeeeeeeccCCC-CCcEE--EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCC
Q 047644 196 CPCLQHLSLTVYFTAANP-ASNLI--ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLP 271 (314)
Q Consensus 196 cp~Le~L~L~~c~~~~~~-~~~~~--i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p 271 (314)
++.|++|+|+++.. .+. +..+. ...++|+.|+++ ++ ....- +..+ .++|++|++++..... ..+..+|
T Consensus 223 l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls--~N-~l~~l-p~~~---~~~L~~L~Ls~N~l~~~~~~~~l~ 294 (310)
T 4glp_A 223 GVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLS--FA-GLEQV-PKGL---PAKLRVLDLSSNRLNRAPQPDELP 294 (310)
T ss_dssp TCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECC--SS-CCCSC-CSCC---CSCCSCEECCSCCCCSCCCTTSCC
T ss_pred CCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECC--CC-CCCch-hhhh---cCCCCEEECCCCcCCCCchhhhCC
Confidence 99999999999976 332 01111 122799999997 33 32221 2222 3899999999886553 2357789
Q ss_pred CceeEEEeE
Q 047644 272 SLHKAVYYV 280 (314)
Q Consensus 272 ~L~~l~l~~ 280 (314)
.|+.+++..
T Consensus 295 ~L~~L~L~~ 303 (310)
T 4glp_A 295 EVDNLTLDG 303 (310)
T ss_dssp CCSCEECSS
T ss_pred CccEEECcC
Confidence 999888764
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.04 E-value=5.8e-06 Score=69.13 Aligned_cols=176 Identities=7% Similarity=-0.016 Sum_probs=110.1
Q ss_pred CCceEEEEEecCCCccccCC-cccccCCeeEEEEccee-ecccCC-CCcCCCCcceEEeee-EEcCCCcHHHHhcCCccc
Q 047644 124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYF-ALTLPP-DGVCFPRLKTFHLML-QQPTNHLPHNLFSRCPCL 199 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~L 199 (314)
..+++|++..+... .++. .+..+++|+.|.++++. ....++ ....+++|++|.|.+ ..++.- -...+.+++.|
T Consensus 31 ~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred CcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence 48999999887533 3444 45568999999999985 555543 456899999999998 344221 12346789999
Q ss_pred cceeeeeeeccCCCCCcEEEecCCcc---eEEEEeeeeCCCCCCCcceEEEEcCCcc-EEEeeccccccee--ecCCCCc
Q 047644 200 QHLSLTVYFTAANPASNLIISSATLK---TFVLEVMYCSHSSAPNQHTVTIVAPNLE-FLDITDDLAVSYA--VHQLPSL 273 (314)
Q Consensus 200 e~L~L~~c~~~~~~~~~~~i~~~~Lk---~L~i~~~~c~~~~~~~~~~l~~~~p~L~-~L~l~~~~~~~~~--~~~~p~L 273 (314)
++|++.++.. .++ .. .-..++|+ .|+++ ++...... .....-..++|+ +|++++.....+. ....++|
T Consensus 108 ~~L~l~~n~l-~~l-p~-~~~l~~L~~L~~L~l~--~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 108 KFLGIFNTGL-KMF-PD-LTKVYSTDIFFILEIT--DNPYMTSI-PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL 181 (239)
T ss_dssp CEEEEEEECC-CSC-CC-CTTCCBCCSEEEEEEE--SCTTCCEE-CTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred CEEeCCCCCC-ccc-cc-cccccccccccEEECC--CCcchhhc-CcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence 9999999965 444 22 11334555 88887 33121110 000112468899 9999887544221 1122678
Q ss_pred eeEEEeEEe-ccCCCCCCCChHHHhhcC-CCceEEEeecCCCC
Q 047644 274 HKAVYYVMF-SEWPPIDRRPPVQLLAGM-TKTKCLTLSAGVLH 314 (314)
Q Consensus 274 ~~l~l~~~~-~~~~~~~~~~~~~ll~~~-~~l~~L~l~~~~l~ 314 (314)
+++++..+. .. ......+.++ ++++.|.++.|.|+
T Consensus 182 ~~L~L~~n~~l~------~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 182 DAVYLNKNKYLT------VIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEECTTCTTCC------EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CEEEcCCCCCcc------cCCHHHhhccccCCcEEECCCCccc
Confidence 888776541 11 1112346677 99999999998764
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.03 E-value=5.8e-06 Score=79.15 Aligned_cols=150 Identities=20% Similarity=0.151 Sum_probs=94.2
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcce
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKT 176 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~ 176 (314)
.++.+.+....-..-.. ...++++|+++.+... .+|. ..++|++|+|+++.....| . .+++|+.
T Consensus 62 ~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~-~--~l~~L~~ 125 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLP-A--LPSGLCK 125 (622)
T ss_dssp TCSEEEECSCCCSCCCC--------CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCC-C--CCTTCCE
T ss_pred CCcEEEecCCCCCCCCC--------cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCC-C--CCCCcCE
Confidence 47777776554211111 1257889988877533 3444 5688999999888666665 2 6788999
Q ss_pred EEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEE
Q 047644 177 FHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLD 256 (314)
Q Consensus 177 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~ 256 (314)
|+|.+..++. +-...|+|++|+|++|.. .++ . -..++|+.|.+. ++ .... +....++|++|+
T Consensus 126 L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l-~~l-~---~~~~~L~~L~L~--~N-~l~~-----l~~~~~~L~~L~ 187 (622)
T 3g06_A 126 LWIFGNQLTS-----LPVLPPGLQELSVSDNQL-ASL-P---ALPSELCKLWAY--NN-QLTS-----LPMLPSGLQELS 187 (622)
T ss_dssp EECCSSCCSC-----CCCCCTTCCEEECCSSCC-SCC-C---CCCTTCCEEECC--SS-CCSC-----CCCCCTTCCEEE
T ss_pred EECCCCCCCc-----CCCCCCCCCEEECcCCcC-CCc-C---CccCCCCEEECC--CC-CCCC-----CcccCCCCcEEE
Confidence 9988877632 112458899999998865 433 2 134678888886 22 2111 113468899998
Q ss_pred eecccccceeecCCCCceeEEEeEE
Q 047644 257 ITDDLAVSYAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 257 l~~~~~~~~~~~~~p~L~~l~l~~~ 281 (314)
+++.....+. ..+++|+.+++..+
T Consensus 188 Ls~N~l~~l~-~~~~~L~~L~L~~N 211 (622)
T 3g06_A 188 VSDNQLASLP-TLPSELYKLWAYNN 211 (622)
T ss_dssp CCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred CCCCCCCCCC-CccchhhEEECcCC
Confidence 8887654221 23567777776543
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.01 E-value=1.2e-05 Score=76.22 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=64.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+.... +|. +.. +|+.|.|+++.+...| . .+++|+.|+|.+..++. +.. .++.|++|+
T Consensus 100 ~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 100 ASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLP-E--LPALLEYINADNNQLTM--LPE---LPTSLEVLS 166 (571)
T ss_dssp TTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred CCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCC-C--cCccccEEeCCCCccCc--CCC---cCCCcCEEE
Confidence 456666666554322 343 222 6666666666555544 2 56666666666666532 111 456666666
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCc-------cEEEeecccccc--eeecCCCCce
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNL-------EFLDITDDLAVS--YAVHQLPSLH 274 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L-------~~L~l~~~~~~~--~~~~~~p~L~ 274 (314)
|+++.. .++ .. +. ++|+.|+++ ++ .... ... + .++| ++|++++..... ..+.++++|+
T Consensus 167 Ls~N~L-~~l-p~--l~-~~L~~L~Ls--~N-~L~~--lp~--~-~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 167 VRNNQL-TFL-PE--LP-ESLEALDVS--TN-LLES--LPA--V-PVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp CCSSCC-SCC-CC--CC-TTCCEEECC--SS-CCSS--CCC--C-C--------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred CCCCCC-CCc-ch--hh-CCCCEEECc--CC-CCCc--hhh--H-HHhhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 666654 334 22 22 666666665 22 2111 111 1 1144 666666654331 1234466666
Q ss_pred eEEEeEE
Q 047644 275 KAVYYVM 281 (314)
Q Consensus 275 ~l~l~~~ 281 (314)
.++++.+
T Consensus 234 ~L~L~~N 240 (571)
T 3cvr_A 234 TIILEDN 240 (571)
T ss_dssp EEECCSS
T ss_pred EEEeeCC
Confidence 6666543
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.97 E-value=7e-08 Score=86.34 Aligned_cols=184 Identities=12% Similarity=0.058 Sum_probs=114.6
Q ss_pred CCceEEEEEecCCCccc---cCCcccccC-CeeEEEEcceeecccCC-CCcC-----CCCcceEEeeeEEcCCCc---HH
Q 047644 124 RNVREIEIDLRDHERIP---LPASIYRSI-TLEVLRLRSYFALTLPP-DGVC-----FPRLKTFHLMLQQPTNHL---PH 190 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~---l~~~~~~c~-~L~~L~L~~~~~~~~~~-~~~~-----~~~L~~L~L~~~~~~~~~---l~ 190 (314)
+++++|+++.+...... +...+..++ +|++|+|+++...+... .... +++|++|+|.++.+++.. +.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 46999999877532211 113344566 89999999986554321 1122 399999999999985433 44
Q ss_pred HHhcCC-ccccceeeeeeeccCCCCCcEEE----e--cCCcceEEEEeeeeCCCCCCCcceEE---EEc-CCccEEEeec
Q 047644 191 NLFSRC-PCLQHLSLTVYFTAANPASNLII----S--SATLKTFVLEVMYCSHSSAPNQHTVT---IVA-PNLEFLDITD 259 (314)
Q Consensus 191 ~ll~~c-p~Le~L~L~~c~~~~~~~~~~~i----~--~~~Lk~L~i~~~~c~~~~~~~~~~l~---~~~-p~L~~L~l~~ 259 (314)
..+..+ +.|++|+|++|.. .+. ....+ . ..+|+.|+++ +|. ....+...+. ... ++|++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l-~~~-~~~~l~~~l~~~~~~L~~L~Ls--~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDF-SSK-SSSEFKQAFSNLPASITSLNLR--GND-LGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCG-GGS-CHHHHHHHHTTSCTTCCEEECT--TSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHhCCCCccEEECcCCcC-CcH-HHHHHHHHHHhCCCceeEEEcc--CCc-CCHHHHHHHHHHHhcCCccccEeeecC
Confidence 556666 8999999999976 433 22111 1 3699999997 332 2222221111 123 4999999999
Q ss_pred ccccce-------eecCC-CCceeEEEeEEeccCCCCCCCChHHHhhc-CCCceEEEeecCCCC
Q 047644 260 DLAVSY-------AVHQL-PSLHKAVYYVMFSEWPPIDRRPPVQLLAG-MTKTKCLTLSAGVLH 314 (314)
Q Consensus 260 ~~~~~~-------~~~~~-p~L~~l~l~~~~~~~~~~~~~~~~~ll~~-~~~l~~L~l~~~~l~ 314 (314)
+..... .+... +.|++++++.+...... ...+...+.. .++++.|.|+.|.|.
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--YAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--HHHHHHHHhcCCCCceEEECcCCCCC
Confidence 865411 23445 49999999865332110 1124445555 569999999999763
No 112
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.95 E-value=3.2e-06 Score=72.33 Aligned_cols=157 Identities=17% Similarity=0.068 Sum_probs=92.3
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
++|++|.++++...+.++ ....+++|+.|+|.+..++.- ....+..++.|++|++.++.. ........-..++|+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEE
Confidence 578888888876555542 455778888888887766321 122456778888888887754 21100000134678888
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc----eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS----YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT 303 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l 303 (314)
++. ++...... ....-..++|++|++++..... ..+.+++.|+++++..+..... ......-+..++.+
T Consensus 106 ~l~--~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l 178 (276)
T 2z62_A 106 VAV--ETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLL 178 (276)
T ss_dssp ECT--TSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTC
T ss_pred ECC--CCCccccC--chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhcccc
Confidence 775 23221111 1112256899999999875432 3467789999999876522110 11122334455555
Q ss_pred e-EEEeecCCCC
Q 047644 304 K-CLTLSAGVLH 314 (314)
Q Consensus 304 ~-~L~l~~~~l~ 314 (314)
. .|.++.|.++
T Consensus 179 ~l~L~ls~n~l~ 190 (276)
T 2z62_A 179 NLSLDLSLNPMN 190 (276)
T ss_dssp CEEEECCSSCCC
T ss_pred ceeeecCCCccc
Confidence 4 8888888763
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.91 E-value=6.8e-07 Score=76.27 Aligned_cols=143 Identities=11% Similarity=-0.004 Sum_probs=91.1
Q ss_pred CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEE
Q 047644 149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFV 228 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~ 228 (314)
.+++.+.++.+...+.+ ....+++|+.|+|.++.+++- . -+..++.|++|++.++.. .++ .. --..++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCC-hh-hccCCCCCEEE
Confidence 34444555554444444 456789999999999988442 2 367899999999999976 555 33 12457899999
Q ss_pred EEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEE
Q 047644 229 LEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLT 307 (314)
Q Consensus 229 i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~ 307 (314)
++ ++...... .+.. ++|++|++++..... ..+..+++|+.+++..+.... + ..+..+++++.|.
T Consensus 92 L~--~N~l~~l~---~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-------~-~~l~~l~~L~~L~ 156 (263)
T 1xeu_A 92 VN--RNRLKNLN---GIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-------I-VMLGFLSKLEVLD 156 (263)
T ss_dssp CC--SSCCSCCT---TCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-------C-GGGGGCTTCCEEE
T ss_pred CC--CCccCCcC---cccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-------C-hHHccCCCCCEEE
Confidence 87 33222211 1111 889999998875542 236678888888876542211 1 1356667777777
Q ss_pred eecCCC
Q 047644 308 LSAGVL 313 (314)
Q Consensus 308 l~~~~l 313 (314)
++.|.+
T Consensus 157 L~~N~i 162 (263)
T 1xeu_A 157 LHGNEI 162 (263)
T ss_dssp CTTSCC
T ss_pred CCCCcC
Confidence 776655
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.91 E-value=2.6e-06 Score=69.65 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=64.1
Q ss_pred CceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 125 NVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
++++|+++.+... .++.. +..+++|++|.++++.....+.. ...+++|+.|+|.+..++.- ....+..++.|++|
T Consensus 29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 4555555554322 22322 23456666666666544444322 24566666666666555321 12234556666666
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEE
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVY 278 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l 278 (314)
++.++.. ..+.....-..++|+.|+++ ++.. ... .....-..++|++|++++.... ..+|.|+.+.+
T Consensus 106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~--~N~l-~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~ 172 (208)
T 2o6s_A 106 ALNTNQL-QSLPDGVFDKLTQLKDLRLY--QNQL-KSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSE 172 (208)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-SCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHH
T ss_pred EcCCCcC-cccCHhHhccCCcCCEEECC--CCcc-cee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHH
Confidence 6666543 22200000123556666664 2211 110 1111113466666666665321 34444444443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.88 E-value=8.5e-07 Score=70.71 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=66.2
Q ss_pred cccCCeeEEEEcceeecccCCCCcC-CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCc
Q 047644 146 YRSITLEVLRLRSYFALTLPPDGVC-FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATL 224 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L 224 (314)
..+.+|+.|.++++.....+ .... +++|+.|+|.+..++. + .-+..++.|+.|+++++.. ..++..+.-..++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence 45677777777777555554 3333 3477777777776643 2 3456777777777777754 21100111134566
Q ss_pred ceEEEEeeeeCCCCCCCcce--EEEEcCCccEEEeecccccc--e----eecCCCCceeEEEeEE
Q 047644 225 KTFVLEVMYCSHSSAPNQHT--VTIVAPNLEFLDITDDLAVS--Y----AVHQLPSLHKAVYYVM 281 (314)
Q Consensus 225 k~L~i~~~~c~~~~~~~~~~--l~~~~p~L~~L~l~~~~~~~--~----~~~~~p~L~~l~l~~~ 281 (314)
+.|+++ ++.. .. ... ..-..|+|++|.+++..... . .+..+|.|+.+++...
T Consensus 91 ~~L~L~--~N~i-~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILT--NNSL-VE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECC--SCCC-CC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECC--CCcC-Cc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666665 2211 11 111 11145667777776654321 1 2445566665555443
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.86 E-value=1.4e-07 Score=84.39 Aligned_cols=212 Identities=12% Similarity=0.028 Sum_probs=123.7
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEecCCCcc---ccCCccccc-CCeeEEEEcceeecccCCC---
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDLRDHERI---PLPASIYRS-ITLEVLRLRSYFALTLPPD--- 167 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~---~l~~~~~~c-~~L~~L~L~~~~~~~~~~~--- 167 (314)
.++.+.+....- .......+...... .++++|+++.+..... .+...+..+ ++|+.|+|+++...+.+..
T Consensus 52 ~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 488888876542 22222222222111 5799999988753221 111123344 7999999999866544211
Q ss_pred --CcC-CCCcceEEeeeEEcCCCcHHH---HhcCCc-cccceeeeeeeccCCCCCcEEE-----ec-CCcceEEEEeeee
Q 047644 168 --GVC-FPRLKTFHLMLQQPTNHLPHN---LFSRCP-CLQHLSLTVYFTAANPASNLII-----SS-ATLKTFVLEVMYC 234 (314)
Q Consensus 168 --~~~-~~~L~~L~L~~~~~~~~~l~~---ll~~cp-~Le~L~L~~c~~~~~~~~~~~i-----~~-~~Lk~L~i~~~~c 234 (314)
... .++|++|+|.++.+++.+... .+..+| .|++|+|++|.. .+. ....+ .. ++|+.|+++ ++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~-~~~~l~~~l~~~~~~L~~L~Ls--~N 206 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASK-NCAELAKFLASIPASVTSLDLS--AN 206 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGS-CHHHHHHHHHTSCTTCCEEECT--TS
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-chh-hHHHHHHHHHhCCCCCCEEECC--CC
Confidence 112 358999999999886544443 455666 999999999965 433 21111 22 589999997 33
Q ss_pred CCCCCCCcceEE---EE-cCCccEEEeecccccc-------eeecCCCCceeEEEeEEeccCCCCC-CCChHHHhhcCCC
Q 047644 235 SHSSAPNQHTVT---IV-APNLEFLDITDDLAVS-------YAVHQLPSLHKAVYYVMFSEWPPID-RRPPVQLLAGMTK 302 (314)
Q Consensus 235 ~~~~~~~~~~l~---~~-~p~L~~L~l~~~~~~~-------~~~~~~p~L~~l~l~~~~~~~~~~~-~~~~~~ll~~~~~ 302 (314)
. ....+...+. .. .++|++|++++..... ..+..++.|+.+++..+........ ...+...+..+++
T Consensus 207 ~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~ 285 (362)
T 3goz_A 207 L-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285 (362)
T ss_dssp C-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred C-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence 2 2222221111 12 4699999999876542 2236678999999987642211000 0112334557778
Q ss_pred ceEEEeecCCCC
Q 047644 303 TKCLTLSAGVLH 314 (314)
Q Consensus 303 l~~L~l~~~~l~ 314 (314)
++.|.+++|.++
T Consensus 286 L~~LdL~~N~l~ 297 (362)
T 3goz_A 286 IILVDKNGKEIH 297 (362)
T ss_dssp EEEECTTSCBCC
T ss_pred eEEEecCCCcCC
Confidence 888889888763
No 117
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.86 E-value=2.8e-06 Score=77.82 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=37.5
Q ss_pred CCcccCCCChHHHHHHhcCCChhhhhhhhcccccccccccc
Q 047644 17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTS 57 (314)
Q Consensus 17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~ 57 (314)
..|.++.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999976543
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.85 E-value=1.9e-05 Score=72.71 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=66.6
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|++..+... .+| .+..+++|++|.++++.....| ...++|+.|+|.+..++. +.. +..++.|++|+
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEE
Confidence 46777777665433 244 4666778888888777554443 223577888887776633 221 56778888888
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL 261 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~ 261 (314)
+.+|.. .++ .. ..++|+.|+++ +|.... ... ....++|++|++++..
T Consensus 202 l~~N~l-~~l-~~---~~~~L~~L~l~--~n~l~~---lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 202 ADNNSL-KKL-PD---LPLSLESIVAG--NNILEE---LPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCC-SSC-CC---CCTTCCEEECC--SSCCSS---CCC-CTTCTTCCEEECCSSC
T ss_pred CCCCcC-CcC-CC---CcCcccEEECc--CCcCCc---ccc-cCCCCCCCEEECCCCc
Confidence 877754 332 11 12466666665 232211 111 1245566666666543
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.83 E-value=1.4e-07 Score=76.83 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=36.1
Q ss_pred cccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 144 SIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 144 ~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
.+..+++|++|.|+++...+.| ....+++|+.|+|.+..++. +...+..+|.|+.|++.++..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence 4445566666666666555544 44556666666666666542 333444456666666666644
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.77 E-value=8.8e-06 Score=77.57 Aligned_cols=127 Identities=16% Similarity=0.067 Sum_probs=69.4
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
+++++|+|++......++ .+..+++|+.|+|.++.++.- -...+.++++|++|+|+++.. ..++....-..++|+.|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEE
Confidence 366777777765555442 345677777777777655210 012345667777777777643 11100000123566666
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc----ceeecCCCCceeEEEeEE
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV----SYAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~----~~~~~~~p~L~~l~l~~~ 281 (314)
+++ ++..... .....-..++|++|++++.... ...+..++.|+++++...
T Consensus 130 ~Ls--~N~l~~l--~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 130 VAV--ETNLASL--ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp ECT--TSCCCCS--TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ECC--CCcCCCC--ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 664 2221111 1111225688999998886543 233567888888888654
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.74 E-value=4.8e-06 Score=79.42 Aligned_cols=131 Identities=20% Similarity=0.134 Sum_probs=88.6
Q ss_pred CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
..+++|+|+.... ..++. .+..+++|++|+|+++.....++ .+..+++|++|+|.+..++.- -...+.++++|++
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence 4789999987653 24443 45678999999999987666653 356799999999999876331 1345788999999
Q ss_pred eeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 202 LSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
|+|.++.. ..+ ....+ ..++|+.|+++ ++ ...........-..++|++|++++...
T Consensus 129 L~Ls~N~l-~~l-~~~~~~~L~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 129 LVAVETNL-ASL-ENFPIGHLKTLKELNVA--HN-LIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EECTTSCC-CCS-TTCCCTTCTTCCEEECC--SS-CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcC-CCC-ChhhhhcCcccCeeccc--cC-ccccCCCchhhccchhhhhhcccCccc
Confidence 99999865 444 22222 45789999986 23 222111112223568899999988654
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.71 E-value=1.9e-06 Score=71.44 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=75.8
Q ss_pred eEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 127 REIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 127 ~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
+.++++... ...+|..+ .+.++.|.|+++.+...++ ....+++|+.|+|.+..++.- ....+..++.|++|+|
T Consensus 14 ~~l~~s~n~--l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQK--LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSC--CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCC--cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEEC
Confidence 344444332 22345433 3456788888876655531 245788888888888776321 1224567888888888
Q ss_pred eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644 205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV 280 (314)
Q Consensus 205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~ 280 (314)
.++.. ..+.....-..++|+.|+++ ++ ......+. .....++|++|++++..... ..+..+++|+.+++..
T Consensus 89 s~N~l-~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 89 TSNRL-ENVQHKMFKGLESLKTLMLR--SN-RITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CSSCC-CCCCGGGGTTCSSCCEEECT--TS-CCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCcc-CccCHhHhcCCcCCCEEECC--CC-cCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 88765 33201111134567777765 12 11111000 11134666666666554331 2244555566555544
No 123
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.66 E-value=1.6e-05 Score=72.45 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=35.8
Q ss_pred CCcccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644 17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l 54 (314)
..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46899999999999999999999999999999999864
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.65 E-value=1.6e-05 Score=65.73 Aligned_cols=133 Identities=10% Similarity=0.062 Sum_probs=84.8
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
..+++|+++.+......-+..+..+++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence 3567777776653332222335567899999999886666553 466889999999999887432 24456789999999
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
+|+++.. ..+.....-..++|+.|+++ ++ ......+ ...-..++|++|++++...
T Consensus 111 ~Ls~N~l-~~~~~~~~~~l~~L~~L~L~--~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 111 MLRSNRI-TCVGNDSFIGLSSVRLLSLY--DN-QITTVAP-GAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCC-CCBCTTSSTTCTTCSEEECT--TS-CCCCBCT-TTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcC-CeECHhHcCCCccCCEEECC--CC-cCCEECH-HHhcCCCCCCEEEecCcCC
Confidence 9998865 32200111145788999886 22 2221111 1112568999999988654
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.61 E-value=9.3e-05 Score=65.56 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=91.0
Q ss_pred CCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecc-cCC-CCcCCCCcceEEeeeE-EcCCCcHHHHhcCCccc
Q 047644 124 RNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALT-LPP-DGVCFPRLKTFHLMLQ-QPTNHLPHNLFSRCPCL 199 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~L 199 (314)
.++++|+|+.+.. ..++.. +..+++|++|.|+++...+ .+. .+.++++|+++.+.+. .+.. -....+..++.|
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence 4788888887653 255554 4457899999998875433 331 3346677766544443 2211 012346788899
Q ss_pred cceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceee--cCCCCceeEE
Q 047644 200 QHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAV--HQLPSLHKAV 277 (314)
Q Consensus 200 e~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~--~~~p~L~~l~ 277 (314)
+.|.+.++.. ............++..|.+. .+.....-....+.-....++.|.+++.....+.- ...+.|+++.
T Consensus 107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~--~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQ--DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp CEEEEEEECC-SSCCCCTTCCBSSCEEEEEE--SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred cccccccccc-ccCCchhhcccchhhhhhhc--cccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 9999988865 32211112344556666664 23221110000111112456777777654432211 1223444444
Q ss_pred EeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 278 YYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 278 l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
+...-.. ...-...++++++++.|.|+.|.|
T Consensus 184 l~~~n~l-----~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 184 LSDNNNL-----EELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CTTCTTC-----CCCCTTTTTTEECCSEEECTTSCC
T ss_pred hccCCcc-----cCCCHHHhccCcccchhhcCCCCc
Confidence 4211000 111123456777777777777765
No 126
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.60 E-value=9.6e-06 Score=73.81 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=35.4
Q ss_pred CCcccCCCChH----HHHHHhcCCChhhhhhhhccccccccc
Q 047644 17 SEDRISCLPDS----ILCQILSVPPTKDAVATSILSPRWKHA 54 (314)
Q Consensus 17 ~~d~~~~LPd~----ll~~Ils~L~~~d~~~~~~vskrWr~l 54 (314)
..|.++.||+| ++.+||+||++++++++++|||+|+++
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999 999999999999999999999999954
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.58 E-value=2.3e-05 Score=65.22 Aligned_cols=131 Identities=17% Similarity=0.087 Sum_probs=85.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+|+.+.... ..+..+..+++|+.|.|+++.+...+. ....+++|+.|+|.+..++.- ....+..++.|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence 578888887765332 223445667899999999887666653 346789999999998877432 23456788999999
Q ss_pred eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
+|.++.. ..++..+ -..++|+.|+++ +. ..... .....-..++|++|.+.+...
T Consensus 118 ~Ls~N~l-~~lp~~~-~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKL-TELPRGI-ERLTHLTHLALD--QN-QLKSI-PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCC-CSCCTTG-GGCTTCSEEECC--SS-CCCCC-CTTTTTTCTTCCEEECTTSCB
T ss_pred eccCCcc-cccCccc-ccCCCCCEEECC--CC-cCCcc-CHHHHhCCCCCCEEEeeCCCc
Confidence 9998865 3331111 245788888886 22 22211 111122468999999988654
No 128
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.58 E-value=8.2e-08 Score=86.29 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=87.8
Q ss_pred HHhCCceEEEEEecCCCcc---ccCCccc-ccCCeeEEEEcceeeccc--CCCCcCCCCcceEEeeeEEcCCCcHHHH--
Q 047644 121 AISRNVREIEIDLRDHERI---PLPASIY-RSITLEVLRLRSYFALTL--PPDGVCFPRLKTFHLMLQQPTNHLPHNL-- 192 (314)
Q Consensus 121 ~~~~~l~~L~l~~~~~~~~---~l~~~~~-~c~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l-- 192 (314)
.+...+++|+++.+..... .+...+. .+++|++|+|+++...+. ......+++|+.|+|.++.+++.+...+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3456899999987653321 2222222 247999999998855331 1133456789999999998866554443
Q ss_pred -h-cCCccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCCCCcceE---EEEcCCccEEEeecccc
Q 047644 193 -F-SRCPCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSAPNQHTV---TIVAPNLEFLDITDDLA 262 (314)
Q Consensus 193 -l-~~cp~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~~~~~~l---~~~~p~L~~L~l~~~~~ 262 (314)
+ ..++.|++|+|++|.. ++. .... -..++|+.|+++ +| ...+.+...+ .-..++|++|+++++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l-~~~-~~~~l~~~L~~~~~L~~L~Ls--~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPL-TAA-GVAVLMEGLAGNTSVTHLSLL--HT-GLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHSTTCCCCEEECCSSCC-HHH-HHHHHHHHHHTCSSCCEEECT--TS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHhcCCccceeeCCCCCC-ChH-HHHHHHHHHhcCCCcCEEeCC--CC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3 4688999999999864 221 1111 135678888775 22 2211111110 11345677777766543
Q ss_pred cc-------eeecCCCCceeEEEeEE
Q 047644 263 VS-------YAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 263 ~~-------~~~~~~p~L~~l~l~~~ 281 (314)
.. ..+...+.|+.++++.+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 31 11223456666666543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.57 E-value=2.9e-05 Score=69.19 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=88.6
Q ss_pred CCeeEEEEcceeecccCCC-Cc-CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644 149 ITLEVLRLRSYFALTLPPD-GV-CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT 226 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~ 226 (314)
+.++.|.|+++.+...+.. .. .+++|+.|+|.+..++.- ....+..++.|++|+|+++.. ..+.....-..++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence 4577888888766555432 23 778888888887766321 122456778888888888754 2110000113467777
Q ss_pred EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---ee---cCCCCceeEEEeEEeccCCCCCCCChHHHhhcC
Q 047644 227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AV---HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGM 300 (314)
Q Consensus 227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~ 300 (314)
|+++ ++.. .... ....-..++|++|++++.....+ .+ ..+++|+.+++..... .......+..+
T Consensus 117 L~L~--~N~i-~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l------~~l~~~~~~~l 186 (361)
T 2xot_A 117 LLLY--NNHI-VVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL------KKLPLTDLQKL 186 (361)
T ss_dssp EECC--SSCC-CEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC------CCCCHHHHHHS
T ss_pred EECC--CCcc-cEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC------CccCHHHhhhc
Confidence 7775 2211 1000 00112468999999998765422 12 4688999888875422 11233456667
Q ss_pred CCc--eEEEeecCCC
Q 047644 301 TKT--KCLTLSAGVL 313 (314)
Q Consensus 301 ~~l--~~L~l~~~~l 313 (314)
+++ +.|.|++|.+
T Consensus 187 ~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 187 PAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHTTEECCSSCE
T ss_pred cHhhcceEEecCCCc
Confidence 763 7889988876
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.55 E-value=0.00013 Score=67.03 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=15.4
Q ss_pred CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc
Q 047644 150 TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP 184 (314)
Q Consensus 150 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 184 (314)
+|+.|.++++.....| ....+++|+.|+|.+..+
T Consensus 216 ~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 216 SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 4555555544333333 233444455555444433
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.54 E-value=1.3e-05 Score=71.38 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCceEEEEEecCCCccccCCccc--ccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccc
Q 047644 124 RNVREIEIDLRDHERIPLPASIY--RSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQ 200 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~--~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 200 (314)
..+++|+|+.+... .++...+ .+++|+.|.|+++.+...++ ....+++|+.|+|.+..++.- ....+..++.|+
T Consensus 39 ~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence 45788888776432 3343333 67999999999987666552 467899999999999877321 233567889999
Q ss_pred ceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceE--EEEcCCccEEEeecccccce---eecCCCCc--
Q 047644 201 HLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTV--TIVAPNLEFLDITDDLAVSY---AVHQLPSL-- 273 (314)
Q Consensus 201 ~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l--~~~~p~L~~L~l~~~~~~~~---~~~~~p~L-- 273 (314)
.|+|.++.. ..+.....-..++|+.|+++ ++ .........+ ....++|+.|++++.....+ .+..++.+
T Consensus 116 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~--~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLS--QN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp EEECCSSCC-CEECTTTTTTCTTCCEEECC--SS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred EEECCCCcc-cEECHHHhCCcccCCEEECC--CC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 999999864 21100001134789999987 22 2222111111 14689999999998765422 23445553
Q ss_pred eeEEEeE
Q 047644 274 HKAVYYV 280 (314)
Q Consensus 274 ~~l~l~~ 280 (314)
+.+++..
T Consensus 192 ~~l~l~~ 198 (361)
T 2xot_A 192 NGLYLHN 198 (361)
T ss_dssp TTEECCS
T ss_pred ceEEecC
Confidence 5566554
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.47 E-value=3e-05 Score=64.09 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=76.3
Q ss_pred CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
.++++|++..+... .++. .+..+++|+.|.|+++..... |.....+++|+.|+|.+..++.- -..++.+++.|+.
T Consensus 32 ~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence 36777777665422 2333 344567888888888755544 23556778888888888776421 2334567788888
Q ss_pred eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
|+|.++.. ..+.....-..++|+.|+++ ++ ..... .....-..++|++|++.+...
T Consensus 109 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKI-NCLRVDAFQDLHNLNLLSLY--DN-KLQTI-AKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCCEEECC--SS-CCSCC-CTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCC-CEeCHHHcCCCCCCCEEECC--CC-cCCEE-CHHHHhCCCCCCEEEeCCCCc
Confidence 88888755 32200111134678888876 22 21111 111112367888888887653
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.30 E-value=6.6e-05 Score=59.52 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=17.5
Q ss_pred cCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 249 APNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 249 ~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
.++|++|++++.....+ .+..++.|+.+++..
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 46677777766543311 234456666666654
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.30 E-value=3.5e-05 Score=61.17 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=74.1
Q ss_pred CceEEEEEecCCCccccCCccccc-CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRS-ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
++++|+++.+... .++. +..+ ++|+.|.|+++...+.+ ....+++|+.|+|.+..++.- ...++..+|.|+.|+
T Consensus 20 ~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence 5677777665433 2332 3344 47888888777555543 666778888888877776321 123345678888888
Q ss_pred eeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCc-ceEEEEcCCccEEEeecccc
Q 047644 204 LTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQ-HTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 204 L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~-~~l~~~~p~L~~L~l~~~~~ 262 (314)
++++.. .++ .. .--..++|+.|+++ ++........ ..+....|+|++|++++...
T Consensus 95 L~~N~i-~~~-~~~~~l~~l~~L~~L~l~--~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSL-VEL-GDLDPLASLKSLTYLCIL--RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCC-CCG-GGGGGGGGCTTCCEEECC--SSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcC-Ccc-hhhHhhhcCCCCCEEEec--CCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 887755 333 21 11145677777775 2322111100 01234678899998887654
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.29 E-value=3.2e-05 Score=62.42 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=52.6
Q ss_pred CeeEEEEcceeecccCCC--CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 150 TLEVLRLRSYFALTLPPD--GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 150 ~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
+|+.|.++++.+...++. ...+++|+.|+|.+..++.- ....+.+.+.|++|+|+++.. . .+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~----~~---------- 93 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-K----EI---------- 93 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-C----EE----------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-C----cc----------
Confidence 566666666544444321 34556666666665555221 122344555666666555532 1 00
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEE
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVM 281 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~ 281 (314)
.....-..++|++|++++..... ..+..+++|+.+++...
T Consensus 94 --------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 94 --------------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp --------------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred --------------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 00000135778888888765442 23556777777777554
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.20 E-value=6.4e-05 Score=71.17 Aligned_cols=79 Identities=20% Similarity=0.163 Sum_probs=48.6
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL 204 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L 204 (314)
.++.|+++.+... .+|. +..+++|+.|.|+++.+...|.....+++|+.|+|.+..++. +. -+..++.|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC--CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 5666666655332 2444 556677777777776555555455567777777777766643 33 4566777777777
Q ss_pred eeeec
Q 047644 205 TVYFT 209 (314)
Q Consensus 205 ~~c~~ 209 (314)
+++..
T Consensus 516 s~N~l 520 (567)
T 1dce_A 516 CNNRL 520 (567)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76644
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.13 E-value=0.00018 Score=56.97 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF 227 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L 227 (314)
++|+.|.++++.....++ ....+++|+.|+|.+..++.- ....+..++.|+.|++.++.. ........-..++|+.|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEE
Confidence 466666666665444432 234566677777766655321 123345666777777766644 22201001123566666
Q ss_pred EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
+++ ++ ..... +....-..++|++|++++...
T Consensus 106 ~l~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 106 ALD--TN-QLKSV-PDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECC--SS-CCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred ECc--CC-cceEe-CHHHhcCCcccCEEEecCCCe
Confidence 665 22 11111 111112357778887777643
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.08 E-value=0.00011 Score=59.41 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=18.7
Q ss_pred EcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644 248 VAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV 280 (314)
Q Consensus 248 ~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~ 280 (314)
..++|++|++++.....+ .+..+++|+.+++..
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 346777777776544321 244566666666654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.92 E-value=0.00018 Score=57.93 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL 202 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 202 (314)
.++++|+++.+......-...+...++|++|.|+++.+... |.....+++|+.|+|.+..++.- ....+.+.+.|+.|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCEE
Confidence 37899998877533222112356789999999999876665 33567899999999999887331 12335678999999
Q ss_pred eeeeeec
Q 047644 203 SLTVYFT 209 (314)
Q Consensus 203 ~L~~c~~ 209 (314)
+|.++..
T Consensus 108 ~L~~N~l 114 (192)
T 1w8a_A 108 NLYDNQI 114 (192)
T ss_dssp ECCSSCC
T ss_pred ECCCCcC
Confidence 9998854
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.91 E-value=0.00023 Score=57.44 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=26.6
Q ss_pred CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
++|++|.|+++.+...|.....+++|+.|+|.+..++.- ....+.+++.|++|+|+++.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc
Confidence 345555555544333332333455555555555544221 11223445555555555543
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.75 E-value=0.00025 Score=57.31 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+++.+.... +| .+..+++|+.|.++++.....|.....+++|+.|+|.+..++. +. -+..++.|+.|+
T Consensus 48 ~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence 589999998765333 45 6677899999999998777766444467999999999999855 44 366889999999
Q ss_pred eeeeeccCCCCCcE--EEecCCcceEEEE
Q 047644 204 LTVYFTAANPASNL--IISSATLKTFVLE 230 (314)
Q Consensus 204 L~~c~~~~~~~~~~--~i~~~~Lk~L~i~ 230 (314)
+.++.. .++ ..+ --..++|+.|+++
T Consensus 122 l~~N~i-~~~-~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 122 MSNNKI-TNW-GEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp ESEEEC-CCH-HHHHHHTTTTTCSEEEEC
T ss_pred CCCCcC-Cch-hHHHHHhcCCCCCEEEec
Confidence 999976 432 111 1145789999996
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.72 E-value=7.6e-06 Score=73.39 Aligned_cols=160 Identities=13% Similarity=0.030 Sum_probs=95.8
Q ss_pred CeeEEEEEeccCCCcchHHHHHHHHHh---CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCC-----
Q 047644 97 SVEKFSLRCSYLRSLGMFDYWVSSAIS---RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDG----- 168 (314)
Q Consensus 97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~---~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~----- 168 (314)
.++.+.+..+. ...... ..+..+.. .++++|+|+.+......+......+++|+.|+|+++...+.....
T Consensus 73 ~L~~L~Ls~n~-l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVR-MTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSC-CCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hCCEEEecCCC-CCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 37777765443 222211 22333332 479999998775433222222233578999999998554321000
Q ss_pred -cCCCCcceEEeeeEEcCCCc---HHHHhcCCccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCC
Q 047644 169 -VCFPRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSA 239 (314)
Q Consensus 169 -~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~ 239 (314)
...++|++|+|.++.+++.+ +...+..++.|++|+|++|.. .+. .... -..++|+.|+++ +|. .++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l-~~~-g~~~L~~~L~~~~~L~~L~Ls--~N~-i~~ 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDE-GLELLAAQLDRNRQLQELNVA--YNG-AGD 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC-HHH-HHHHHHHHGGGCSCCCEEECC--SSC-CCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC-CcH-HHHHHHHHHhcCCCcCeEECC--CCC-CCH
Confidence 24688999999999885544 445567899999999999864 321 1111 134689999997 342 222
Q ss_pred CCcceEE---EEcCCccEEEeeccccc
Q 047644 240 PNQHTVT---IVAPNLEFLDITDDLAV 263 (314)
Q Consensus 240 ~~~~~l~---~~~p~L~~L~l~~~~~~ 263 (314)
.+...+. ...|+|++|++++....
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2111111 14689999999988654
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.55 E-value=0.00022 Score=69.61 Aligned_cols=111 Identities=16% Similarity=0.040 Sum_probs=61.7
Q ss_pred CcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecC
Q 047644 143 ASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSA 222 (314)
Q Consensus 143 ~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~ 222 (314)
..+..++.|+.|+|+++.+...|.....+++|+.|+|.+..++ .+..-+..++.|+.|+|+++.. ..+ ...--..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~l-p~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSL-PAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSC-CSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-Ccc-ChhhcCCC
Confidence 3444567777777777765555544556777777777777664 2333456677777777777754 322 11111345
Q ss_pred CcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644 223 TLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA 262 (314)
Q Consensus 223 ~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~ 262 (314)
+|+.|+++ ++.. ..- +.. .-..++|++|++++...
T Consensus 294 ~L~~L~L~--~N~l-~~l-p~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFF--DNMV-TTL-PWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECC--SSCC-CCC-CSS-TTSCTTCCCEECTTSCC
T ss_pred CCCEEECC--CCCC-Ccc-Chh-hhcCCCccEEeCCCCcc
Confidence 67777775 2221 111 111 22457777777776543
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.51 E-value=0.0002 Score=69.79 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=67.4
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
..++.|+|+.+... .++..++.+++|++|.|+++.+...|.....+++|+.|+|.+..++ .+..-+..++.|++|+
T Consensus 224 ~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence 46777877766532 5666777788888888888766666645567888888888888775 2333456778888888
Q ss_pred eeeeeccCCCCCcEEEecCCcceEEEE
Q 047644 204 LTVYFTAANPASNLIISSATLKTFVLE 230 (314)
Q Consensus 204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~ 230 (314)
|.++.. ..++.. --..++|+.|+++
T Consensus 300 L~~N~l-~~lp~~-~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 300 FFDNMV-TTLPWE-FGNLCNLQFLGVE 324 (727)
T ss_dssp CCSSCC-CCCCSS-TTSCTTCCCEECT
T ss_pred CCCCCC-CccChh-hhcCCCccEEeCC
Confidence 888754 333111 1134677777775
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.49 E-value=0.00044 Score=55.37 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=14.2
Q ss_pred CCcceEEeeeEEcCCCc---HHHHhcCCccccceee
Q 047644 172 PRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSL 204 (314)
Q Consensus 172 ~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L 204 (314)
++|++|+|.+..+++.+ +...+..++.|++|+|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 44444444444443332 2222334444555555
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.43 E-value=0.0012 Score=62.31 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS 203 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 203 (314)
.++++|+|+.+... .+|..+..+++|+.|.|+++.+...| ....+++|+.|+|.+..++.-.....+..++.|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 58999999887654 77888889999999999999777777 7788999999999999885432144567899999999
Q ss_pred eeeeec
Q 047644 204 LTVYFT 209 (314)
Q Consensus 204 L~~c~~ 209 (314)
|+++..
T Consensus 540 L~~N~l 545 (567)
T 1dce_A 540 LQGNSL 545 (567)
T ss_dssp CTTSGG
T ss_pred ecCCcC
Confidence 999865
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.24 E-value=0.00013 Score=58.54 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=38.7
Q ss_pred CceEEEEEecCCCc---cccCCcccccCCeeEEEEcceeeccc-----CCCCcCCCCcceEEe--eeEEcCCCc---HHH
Q 047644 125 NVREIEIDLRDHER---IPLPASIYRSITLEVLRLRSYFALTL-----PPDGVCFPRLKTFHL--MLQQPTNHL---PHN 191 (314)
Q Consensus 125 ~l~~L~l~~~~~~~---~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L--~~~~~~~~~---l~~ 191 (314)
.+++|+|+.+.... ..+...+..+++|++|+|+++...+. .......++|++|+| .+..+++++ +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 45666555443211 12222233345566666655533221 012233455666666 445554433 344
Q ss_pred HhcCCccccceeeeeee
Q 047644 192 LFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 192 ll~~cp~Le~L~L~~c~ 208 (314)
.+..++.|++|+|.+|.
T Consensus 146 ~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHCSSCCEEECCCSS
T ss_pred HHHhCCCcCEEeccCCC
Confidence 44455566666665553
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.02 E-value=0.0052 Score=48.44 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- -..++..++.|+.|+|.++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 45555555554443332 1233455555555555544221 11223444555555555543
No 149
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.02 E-value=0.019 Score=50.44 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=87.9
Q ss_pred cccCCcccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcE
Q 047644 139 IPLPASIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNL 217 (314)
Q Consensus 139 ~~l~~~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~ 217 (314)
.++|..+ .+++++|.|+++.....|+. +.++++|++|+|.+..+...--...+.+++.|.++.+..+.....+....
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 3556544 36899999999877676643 56899999999998865221112346678888877766664311110011
Q ss_pred EEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ce---eecCC-CCceeEEEeEEeccCCCCCCCC
Q 047644 218 IISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SY---AVHQL-PSLHKAVYYVMFSEWPPIDRRP 292 (314)
Q Consensus 218 ~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~---~~~~~-p~L~~l~l~~~~~~~~~~~~~~ 292 (314)
.-..++|+.|+++ ++..... .........++..|.+.+.... .+ .+..+ ..++.++++..... .
T Consensus 100 f~~l~~L~~L~l~--~n~l~~~--~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------~ 168 (350)
T 4ay9_X 100 FQNLPNLQYLLIS--NTGIKHL--PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------E 168 (350)
T ss_dssp BCCCTTCCEEEEE--EECCSSC--CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-------E
T ss_pred hhhcccccccccc--ccccccC--Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-------C
Confidence 1245789999997 3432111 1112235667778888765332 11 22333 34666666543111 0
Q ss_pred hHHHhhcCCCceEEEeec
Q 047644 293 PVQLLAGMTKTKCLTLSA 310 (314)
Q Consensus 293 ~~~ll~~~~~l~~L~l~~ 310 (314)
+..-.-..+++++|.+..
T Consensus 169 i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp ECTTSSTTEEEEEEECTT
T ss_pred CChhhccccchhHHhhcc
Confidence 111112345778887764
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.96 E-value=0.0045 Score=48.53 Aligned_cols=60 Identities=25% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644 149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT 209 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~ 209 (314)
++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- ....+..++.|+.|+|.++..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence 56666666666554443 2344566667776666665321 123345666666666666543
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.78 E-value=0.0004 Score=60.81 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=21.8
Q ss_pred cCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeE
Q 047644 148 SITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQ 182 (314)
Q Consensus 148 c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~ 182 (314)
|++|+.|.|.. .....+. .+.+|++|+.|.|.+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence 78888888876 3333332 4557788888888654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.68 E-value=0.0069 Score=47.69 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=24.3
Q ss_pred ccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 147 RSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 147 ~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
..++|+.|.|+++.+...|.. ...+++|+.|+|.+..+..- ....+..++.|+.|.|.+.
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCC
Confidence 344444444444433333321 23444444444444443210 1122334444444444444
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.65 E-value=0.0088 Score=46.83 Aligned_cols=83 Identities=19% Similarity=0.131 Sum_probs=59.5
Q ss_pred CCceEEEEEecCCCcccc-CCcccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 124 RNVREIEIDLRDHERIPL-PASIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~~l-~~~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
..+++|+|+.+... .+ +..+...++|+.|.|+++.+...++. ...+++|+.|+|.+..+..- ....+..++.|+.
T Consensus 30 ~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 47788888766432 23 34455678999999999877666543 46889999999998887431 1234678899999
Q ss_pred eeeeeeec
Q 047644 202 LSLTVYFT 209 (314)
Q Consensus 202 L~L~~c~~ 209 (314)
|.|.+..+
T Consensus 107 L~L~~N~~ 114 (170)
T 3g39_A 107 IWLLNNPW 114 (170)
T ss_dssp EECCSSCB
T ss_pred EEeCCCCC
Confidence 99988755
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.64 E-value=0.0057 Score=53.33 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=50.6
Q ss_pred eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcC-------
Q 047644 98 VEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVC------- 170 (314)
Q Consensus 98 l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~------- 170 (314)
|+.+.+.... ....+ .++... ..+++.|+|+.+....+....... +.+..+.+......+. .+.+
T Consensus 27 l~~L~l~g~i--~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~I~~~--aF~~~~~~~~~ 98 (329)
T 3sb4_A 27 ITHLTLTGKL--NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANFVPAY--AFSNVVNGVTK 98 (329)
T ss_dssp CSEEEEEEEE--CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTEECTT--TTEEEETTEEE
T ss_pred eeEEEEeccc--cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccc--cccccccccccccCHH--Hhccccccccc
Confidence 6777776432 11111 222221 357888888766433222222111 1122233322222111 3445
Q ss_pred -CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644 171 -FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY 207 (314)
Q Consensus 171 -~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c 207 (314)
+++|+.|.|.+ .+..- -...+.+|++|++|.+...
T Consensus 99 g~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp ECTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCS
T ss_pred ccCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCC
Confidence 89999999987 44110 0234679999999999765
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.03 E-value=0.0026 Score=57.41 Aligned_cols=75 Identities=16% Similarity=0.203 Sum_probs=42.3
Q ss_pred CceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeE--EcCCCcHHHHhcCCccccc
Q 047644 125 NVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQ--QPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~ 201 (314)
+++++.+.. ....+.. ....|++|+.+.|........+.....+.+|+.+.|..- .+++ ..+.+|+.|+.
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence 456555542 1122332 334578888888876544444434445677777777432 1122 24668888888
Q ss_pred eeeee
Q 047644 202 LSLTV 206 (314)
Q Consensus 202 L~L~~ 206 (314)
+.+..
T Consensus 231 l~l~~ 235 (401)
T 4fdw_A 231 IEIPE 235 (401)
T ss_dssp EECCT
T ss_pred EecCC
Confidence 88754
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.47 E-value=0.015 Score=50.96 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=28.7
Q ss_pred cCCcccccCCeeEEEEcc-eeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644 141 LPASIYRSITLEVLRLRS-YFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 141 l~~~~~~c~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
+|. +...++|+.|.|++ ..+...++ ....+++|+.|+|.+..++. -....+.+++.|+.|+|++..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc
Confidence 444 44445555555543 33333321 23345555555555544421 012233445555555555543
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.04 E-value=0.071 Score=47.88 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=28.3
Q ss_pred CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEee
Q 047644 125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLM 180 (314)
Q Consensus 125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~ 180 (314)
+++.++|.... ...++...+.|.+|+.+.|... ....+ ..+.++++|+.+.|.
T Consensus 181 ~L~~l~l~~n~--l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 181 NLKKADLSKTK--ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TCCEEECTTSC--CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred cCCeeecCCCc--ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 57777764322 2344555555677777776543 21111 134456666666664
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.02 E-value=0.05 Score=47.52 Aligned_cols=81 Identities=19% Similarity=0.101 Sum_probs=41.7
Q ss_pred CceEEEEEe-cCCCccccC-CcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644 125 NVREIEIDL-RDHERIPLP-ASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH 201 (314)
Q Consensus 125 ~l~~L~l~~-~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 201 (314)
++++|+|+. +.. ..++ ..+..+++|+.|.|+++.+...++ .+..+++|+.|+|.+..++.- ...++...+ |+.
T Consensus 32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQE 107 (347)
T ss_dssp CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCE
T ss_pred CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceE
Confidence 466666653 321 1223 234456677777777665544442 235667777777766665221 112223333 666
Q ss_pred eeeeeeec
Q 047644 202 LSLTVYFT 209 (314)
Q Consensus 202 L~L~~c~~ 209 (314)
|.|.+...
T Consensus 108 l~l~~N~~ 115 (347)
T 2ifg_A 108 LVLSGNPL 115 (347)
T ss_dssp EECCSSCC
T ss_pred EEeeCCCc
Confidence 66665543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.75 E-value=0.016 Score=49.00 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCceEEEEEecCCCcc-ccCCcccccCCeeEEEEcceeecccCCCCcCCC--CcceEEeeeEEcCC------CcHHHHhc
Q 047644 124 RNVREIEIDLRDHERI-PLPASIYRSITLEVLRLRSYFALTLPPDGVCFP--RLKTFHLMLQQPTN------HLPHNLFS 194 (314)
Q Consensus 124 ~~l~~L~l~~~~~~~~-~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~ll~ 194 (314)
..++.|+|+.+..... .++..+..+++|+.|+|+++.+.+.. ....+. +|++|.|.+..+.. .....++.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 4788888877654332 34445556788888888887554432 222233 78888887776632 23346777
Q ss_pred CCccccceeee
Q 047644 195 RCPCLQHLSLT 205 (314)
Q Consensus 195 ~cp~Le~L~L~ 205 (314)
.+|.|+.|+=.
T Consensus 249 ~~P~L~~LDg~ 259 (267)
T 3rw6_A 249 RFPKLLRLDGH 259 (267)
T ss_dssp HCTTCCEESSC
T ss_pred HCcccCeECCc
Confidence 88888877633
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.22 E-value=0.16 Score=40.69 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEecCCC---ccccCCcccccCCeeEEE
Q 047644 81 AFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDLRDHE---RIPLPASIYRSITLEVLR 155 (314)
Q Consensus 81 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~---~~~l~~~~~~c~~L~~L~ 155 (314)
.+...+.+++... ..++.+.|.......+..+. .+..+.. ..+++|+|..+... ...+...+...++|+.|.
T Consensus 28 ~v~~~l~~ll~~n--~~L~~L~L~~nn~igd~ga~-~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 28 DVESCINRLREDD--TDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp CHHHHHHHHHTTC--SSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CHHHHHHHHHhcC--CCccEEECCCCCCCCHHHHH-HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 3444555555433 23666665432122222222 2333332 24566665544321 112222222335555555
Q ss_pred Ecce
Q 047644 156 LRSY 159 (314)
Q Consensus 156 L~~~ 159 (314)
|+.+
T Consensus 105 L~~N 108 (197)
T 1pgv_A 105 VESN 108 (197)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.26 E-value=0.13 Score=41.18 Aligned_cols=98 Identities=10% Similarity=-0.015 Sum_probs=58.9
Q ss_pred CcchHHHHHHHHHhC--CceEEEEEec-CCC---ccccCCcccccCCeeEEEEcceeecccCC-----CCcCCCCcceEE
Q 047644 110 SLGMFDYWVSSAISR--NVREIEIDLR-DHE---RIPLPASIYRSITLEVLRLRSYFALTLPP-----DGVCFPRLKTFH 178 (314)
Q Consensus 110 ~~~~~~~w~~~~~~~--~l~~L~l~~~-~~~---~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~ 178 (314)
+...+...+..+... .+++|+|+.. ... ...+...+....+|+.|.|+++...+.-. .......|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 445677788777653 5888888653 211 11233334445788888888875544310 112357788888
Q ss_pred eeeEEcCCCcHHH---HhcCCccccceeeeee
Q 047644 179 LMLQQPTNHLPHN---LFSRCPCLQHLSLTVY 207 (314)
Q Consensus 179 L~~~~~~~~~l~~---ll~~cp~Le~L~L~~c 207 (314)
|.+..+++.+... .+..-..|++|.|.++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 8888886554443 4445667888888765
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=80.33 E-value=0.47 Score=39.98 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=17.5
Q ss_pred CCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeee
Q 047644 171 FPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYF 208 (314)
Q Consensus 171 ~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~ 208 (314)
+|+|+.|+|.+..+ +-..+..++..+|+|+.|+|++..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 44555555555444 222333344445555555555443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=78.30 E-value=1.3 Score=39.16 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=55.8
Q ss_pred CCcCCCCcceEEeeeEE--cCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcce
Q 047644 167 DGVCFPRLKTFHLMLQQ--PTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHT 244 (314)
Q Consensus 167 ~~~~~~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~ 244 (314)
.+..+..|+.+.+.... ++. ..+.+|+.|+.+.+..-- ..+.....-.+.+|+.+.|- .....- ...
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i--~~I~~~aF~~c~~L~~i~lp----~~v~~I-~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRI--TELPESVFAGCISLKSIDIP----EGITQI-LDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECC----TTCCEE-CTT
T ss_pred eeeecccccEEecccccceecC----cccccccccccccCCCcc--cccCceeecCCCCcCEEEeC----CcccEe-hHh
Confidence 34456667766664321 122 234567777777664210 00000001134566666652 000000 000
Q ss_pred EEEEcCCccEEEeeccccc--ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644 245 VTIVAPNLEFLDITDDLAV--SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL 313 (314)
Q Consensus 245 l~~~~p~L~~L~l~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l 313 (314)
....|.+|+.+.+-..... ...+.++.+|+.+++..... ...-...+++++.+.+..+.+
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~---------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRS---------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHH---------HHHTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCcee---------ehhhhhccCCCCEEEeCCCCE
Confidence 1125677777777543221 45577888888887754211 123356778888888876654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.25 E-value=2.7 Score=37.14 Aligned_cols=138 Identities=14% Similarity=0.012 Sum_probs=63.5
Q ss_pred cccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcE----EEec
Q 047644 146 YRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNL----IISS 221 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~----~i~~ 221 (314)
..|..|+.+.+......-....+..++.|+.+.+....+.+. .+..|+.|+++.+... + ..+ .-.+
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~-----i-~~I~~~aF~~c 319 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS-----V-KFIGEEAFESC 319 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTT-----C-CEECTTTTTTC
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCceeeccc----cccccccccccccccc-----c-ceechhhhcCC
Confidence 345666666554431110011344556666665555444322 3457777777776432 1 111 0134
Q ss_pred CCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc--ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhc
Q 047644 222 ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV--SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAG 299 (314)
Q Consensus 222 ~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~ 299 (314)
.+|+.+++. .....- .......|.+|+.+.+...... ...+.++++|+++.+..... .+..-..+
T Consensus 320 ~~L~~i~lp----~~v~~I-~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~~--------~~~~~F~~ 386 (394)
T 4fs7_A 320 TSLVSIDLP----YLVEEI-GKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKRLE--------QYRYDFED 386 (394)
T ss_dssp TTCCEECCC----TTCCEE-CTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGGG--------GGGGGBCT
T ss_pred CCCCEEEeC----CcccEE-hHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCCCE--------EhhheecC
Confidence 556666552 100000 0000114566777766543211 33566777888777643211 11223556
Q ss_pred CCCceEE
Q 047644 300 MTKTKCL 306 (314)
Q Consensus 300 ~~~l~~L 306 (314)
|++++.+
T Consensus 387 c~~L~~I 393 (394)
T 4fs7_A 387 TTKFKWI 393 (394)
T ss_dssp TCEEEEE
T ss_pred CCCCcEE
Confidence 6666654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=42.13 E-value=17 Score=31.88 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred ccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeee-E-EcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEec
Q 047644 145 IYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLML-Q-QPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISS 221 (314)
Q Consensus 145 ~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~-~-~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~ 221 (314)
...|..|+.+.+... ....+ ..+.+|.+|+.+.|.. + .+++. .+.+|..|+++.|...- ..+...-.-.|
T Consensus 284 F~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv--~~I~~~aF~~C 356 (394)
T 4gt6_A 284 FMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSV--TKIPESAFSNC 356 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTC--CBCCGGGGTTC
T ss_pred cccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECccc--CEEhHhHhhCC
Confidence 345889998888653 22222 1455788899988853 2 22332 46789999999885321 11201111256
Q ss_pred CCcceEEEE
Q 047644 222 ATLKTFVLE 230 (314)
Q Consensus 222 ~~Lk~L~i~ 230 (314)
.+|+.+.+.
T Consensus 357 ~~L~~i~~~ 365 (394)
T 4gt6_A 357 TALNNIEYS 365 (394)
T ss_dssp TTCCEEEES
T ss_pred CCCCEEEEC
Confidence 788888874
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=41.08 E-value=18 Score=31.39 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=35.9
Q ss_pred cccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEE---cCCCcHHHHhcCCccccceeee
Q 047644 146 YRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQ---PTNHLPHNLFSRCPCLQHLSLT 205 (314)
Q Consensus 146 ~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~---~~~~~l~~ll~~cp~Le~L~L~ 205 (314)
..|.+|+.+.+... ....+ ..+..|++|+.+.|.+.. +++. .+.+|+.|+.+.|.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcC
Confidence 45788888888654 22222 145678889988886432 2333 46789999988885
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=38.68 E-value=18 Score=26.20 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEc
Q 047644 149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQP 184 (314)
Q Consensus 149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~ 184 (314)
.+|+.|+|+++.+..++. .+..+++|+.|.|.+-.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 468888888886666653 345678888888887766
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=36.36 E-value=20 Score=31.34 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=48.7
Q ss_pred ccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeee-E-EcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEec
Q 047644 145 IYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLML-Q-QPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISS 221 (314)
Q Consensus 145 ~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~-~-~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~ 221 (314)
...|.+|+.+.+... ..... ..+.+|.+|+.+.|.. + .+++ ..+.+|..|+.+.+...- ..+...-.-.|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~l--~~I~~~aF~~C 365 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGK----RSFRGCTSLSNINFPLSL--RKIGANAFQGC 365 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECT----TTTTTCTTCCEECCCTTC--CEECTTTBTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhH----HhccCCCCCCEEEECccc--cEehHHHhhCC
Confidence 456899999998654 22221 1456789999998853 2 1233 246799999999885431 11100111256
Q ss_pred CCcceEEEE
Q 047644 222 ATLKTFVLE 230 (314)
Q Consensus 222 ~~Lk~L~i~ 230 (314)
.+|+.+.+.
T Consensus 366 ~~L~~i~lp 374 (394)
T 4fs7_A 366 INLKKVELP 374 (394)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEC
Confidence 889999885
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=22.73 E-value=39 Score=29.08 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=47.8
Q ss_pred ccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCC
Q 047644 145 IYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSAT 223 (314)
Q Consensus 145 ~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~ 223 (314)
.+.|..|+.+.+... ..... ..+..+.+|+.+.+..-.-.- -...+.+|+.|+.+.+..... ..+.....-.+.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i--~~~aF~~c~~L~~i~l~~~~i-~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTV--PYLLCSGCSNLTKVVMDNSAI-ETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEE--CTTTTTTCTTCCEEEECCTTC-CEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceec--ccccccccccccccccccccc-ceehhhhhcCCCC
Confidence 456899999998654 21121 145578889998885421100 023567999999999976421 1010011124577
Q ss_pred cceEEE
Q 047644 224 LKTFVL 229 (314)
Q Consensus 224 Lk~L~i 229 (314)
|+++.+
T Consensus 312 L~~i~l 317 (379)
T 4h09_A 312 LSSVTL 317 (379)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 888777
Done!