BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047648
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 205 ASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADA 245
A D+++ MK+ G+ P++ +Y + G+C+KG K Y+ DA
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 6/134 (4%)
Query: 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILI------DGYCKKGGIGKMYKADAV 246
L+ K G + +A + ++ + GV YN+L+ + + + + +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 247 FKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV 306
FK M+ + ++PNE TF ++ A + ++M + GI + +Y + G C
Sbjct: 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Query: 307 DGKLDEAVALRDEM 320
G D+A + M
Sbjct: 153 KGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 205 ASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADA 245
A D ++ K+ G+ P++ +Y + G+C+KG K Y+ DA
Sbjct: 124 AFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILI------DGYCKKGGIGKMYKADAV 246
L+ K G + +A + ++ + GV YN+L+ + + + + +
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 247 FKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV 306
FK + + ++PNE TF ++ A ++ + GI + +Y + G C
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 307 DGKLDEA 313
G D+A
Sbjct: 153 KGDADKA 159
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFA 385
+PN + NA + FC + + R F+D E LS + ID Y
Sbjct: 176 QPNGIYRNAKV-AFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINW 234
Query: 386 MRNSMLDRGVLPDVSTYNC--LIAGLSR 411
M+ +L+ + VS Y LI+G++R
Sbjct: 235 MKAGILEADRVLTVSPYYAEELISGIAR 262
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 155 NQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN 190
N L +K+GK++D E +YKE+ R E S N
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 155 NQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN 190
N L +K+GK++D E +YKE+ R E S N
Sbjct: 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,766,322
Number of Sequences: 62578
Number of extensions: 580182
Number of successful extensions: 1507
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 28
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)