Query 047648
Match_columns 537
No_of_seqs 627 out of 3910
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 13:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-65 5.5E-70 527.0 59.6 463 41-531 384-871 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.6E-64 1.2E-68 517.0 57.6 455 36-519 415-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 6.8E-61 1.5E-65 503.9 48.5 477 29-533 155-651 (857)
4 PLN03081 pentatricopeptide (PP 100.0 6.6E-61 1.4E-65 492.3 46.6 461 31-533 92-554 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2E-60 4.2E-65 500.5 47.4 478 30-534 55-616 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1E-58 2.3E-63 476.0 44.9 434 62-532 86-519 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.3E-30 1.4E-34 275.7 56.1 472 39-534 409-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-29 2E-33 266.7 57.1 401 114-534 463-864 (899)
9 PRK11447 cellulose synthase su 99.9 2.2E-21 4.8E-26 210.0 58.9 472 38-530 158-734 (1157)
10 PRK11447 cellulose synthase su 99.9 2.4E-21 5.3E-26 209.6 58.2 478 35-532 36-696 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.5E-22 5.4E-27 185.1 35.6 421 66-507 51-489 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 6.6E-22 1.4E-26 182.3 34.7 441 66-528 34-477 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2E-19 4.2E-24 183.0 51.8 401 66-501 130-571 (615)
14 PRK15174 Vi polysaccharide exp 99.9 6E-20 1.3E-24 186.0 47.3 333 121-466 47-384 (656)
15 PRK11788 tetratricopeptide rep 99.9 3.6E-21 7.7E-26 186.1 36.0 301 195-508 44-354 (389)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-20 1.2E-24 187.0 46.0 402 118-532 129-567 (615)
17 PRK09782 bacteriophage N4 rece 99.9 6.4E-19 1.4E-23 182.5 53.6 472 31-534 48-704 (987)
18 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 182.6 35.7 304 122-435 41-354 (389)
19 PRK10049 pgaA outer membrane p 99.9 2.7E-19 5.9E-24 185.2 48.0 422 59-517 11-470 (765)
20 PRK15174 Vi polysaccharide exp 99.9 2.9E-19 6.3E-24 181.1 46.3 360 126-501 15-381 (656)
21 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.7E-22 173.0 47.9 406 27-462 13-455 (765)
22 PRK14574 hmsH outer membrane p 99.9 9.8E-17 2.1E-21 163.1 51.5 446 30-512 37-522 (822)
23 PRK09782 bacteriophage N4 rece 99.9 1.9E-16 4.2E-21 164.3 52.5 447 44-507 164-710 (987)
24 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.2E-21 161.8 50.0 440 59-533 30-510 (822)
25 KOG2002 TPR-containing nuclear 99.9 1.8E-17 4E-22 161.2 40.1 451 45-526 254-735 (1018)
26 KOG2002 TPR-containing nuclear 99.8 3.3E-16 7.2E-21 152.6 41.8 448 33-512 276-756 (1018)
27 KOG4422 Uncharacterized conser 99.8 3.6E-15 7.9E-20 132.4 41.4 348 148-504 204-593 (625)
28 KOG2003 TPR repeat-containing 99.8 1.1E-16 2.5E-21 142.9 26.3 452 42-524 216-711 (840)
29 KOG4422 Uncharacterized conser 99.8 1.3E-13 2.9E-18 122.7 43.7 341 113-462 204-589 (625)
30 KOG2076 RNA polymerase III tra 99.8 2.1E-13 4.6E-18 132.5 43.5 327 73-425 149-509 (895)
31 KOG2076 RNA polymerase III tra 99.7 2.1E-12 4.5E-17 125.7 46.0 438 37-501 149-695 (895)
32 KOG0495 HAT repeat protein [RN 99.7 1E-11 2.2E-16 116.6 47.5 401 113-526 437-870 (913)
33 KOG1915 Cell cycle control pro 99.7 1.2E-11 2.6E-16 111.9 44.3 436 40-513 86-546 (677)
34 PRK10747 putative protoheme IX 99.7 3E-13 6.5E-18 129.6 34.5 80 413-498 308-387 (398)
35 KOG0495 HAT repeat protein [RN 99.7 5.1E-11 1.1E-15 112.0 46.7 370 121-507 484-884 (913)
36 KOG2003 TPR repeat-containing 99.7 1.5E-13 3.2E-18 123.2 29.0 393 120-527 205-680 (840)
37 KOG1155 Anaphase-promoting com 99.7 3.1E-12 6.7E-17 115.3 37.2 359 147-528 160-528 (559)
38 PF13429 TPR_15: Tetratricopep 99.7 7.2E-16 1.6E-20 141.1 13.1 253 237-499 21-275 (280)
39 KOG1155 Anaphase-promoting com 99.7 1E-10 2.2E-15 105.7 44.7 386 113-520 161-553 (559)
40 PRK10747 putative protoheme IX 99.7 1.2E-12 2.6E-17 125.4 35.0 285 164-464 97-391 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 9.1E-16 2E-20 140.5 12.7 261 121-391 13-275 (280)
42 TIGR00540 hemY_coli hemY prote 99.7 1.2E-12 2.6E-17 126.2 34.4 133 363-499 262-397 (409)
43 TIGR00540 hemY_coli hemY prote 99.7 8.9E-13 1.9E-17 127.1 33.2 294 128-461 96-397 (409)
44 KOG0547 Translocase of outer m 99.6 7.6E-12 1.6E-16 113.6 35.5 370 119-500 118-565 (606)
45 KOG1126 DNA-binding cell divis 99.6 8.6E-14 1.9E-18 131.0 22.2 201 293-501 420-620 (638)
46 KOG1173 Anaphase-promoting com 99.6 3.7E-11 7.9E-16 111.3 38.2 428 58-520 44-535 (611)
47 KOG1126 DNA-binding cell divis 99.6 2.5E-13 5.4E-18 128.0 24.2 287 166-467 334-624 (638)
48 COG3071 HemY Uncharacterized e 99.6 2.6E-11 5.7E-16 107.7 33.3 252 237-500 131-389 (400)
49 COG3071 HemY Uncharacterized e 99.6 1.2E-10 2.7E-15 103.6 37.1 296 157-465 88-392 (400)
50 COG2956 Predicted N-acetylgluc 99.6 2.1E-11 4.6E-16 105.1 30.5 287 199-501 48-347 (389)
51 KOG1915 Cell cycle control pro 99.6 7.3E-10 1.6E-14 100.5 41.7 437 44-500 108-584 (677)
52 COG2956 Predicted N-acetylgluc 99.5 7.4E-11 1.6E-15 101.8 30.9 288 27-340 35-326 (389)
53 KOG2047 mRNA splicing factor [ 99.5 1.7E-09 3.7E-14 101.8 41.1 442 42-500 101-614 (835)
54 KOG0547 Translocase of outer m 99.5 1.1E-10 2.3E-15 106.3 31.5 220 237-462 339-565 (606)
55 KOG1156 N-terminal acetyltrans 99.5 5.2E-09 1.1E-13 98.9 39.6 423 40-503 20-470 (700)
56 KOG1129 TPR repeat-containing 99.5 2E-11 4.4E-16 105.2 21.6 230 120-358 227-458 (478)
57 KOG2047 mRNA splicing factor [ 99.5 2.4E-08 5.1E-13 94.4 42.9 429 59-507 77-584 (835)
58 PRK12370 invasion protein regu 99.5 2.1E-10 4.5E-15 115.0 31.3 271 220-502 255-536 (553)
59 KOG1173 Anaphase-promoting com 99.5 2.7E-09 5.9E-14 99.2 35.1 399 121-531 54-513 (611)
60 KOG1174 Anaphase-promoting com 99.4 3.9E-08 8.5E-13 88.1 39.8 392 114-526 95-523 (564)
61 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.3E-15 102.0 27.1 200 294-500 31-231 (234)
62 KOG1129 TPR repeat-containing 99.4 2.9E-11 6.3E-16 104.3 19.2 233 263-506 227-461 (478)
63 PF12569 NARP1: NMDA receptor- 99.4 5.9E-09 1.3E-13 101.1 35.3 293 123-427 11-333 (517)
64 TIGR02521 type_IV_pilW type IV 99.4 5.4E-10 1.2E-14 99.7 26.7 200 258-461 30-230 (234)
65 KOG3785 Uncharacterized conser 99.4 3.4E-09 7.4E-14 92.8 29.9 201 299-510 290-497 (557)
66 PRK12370 invasion protein regu 99.4 8E-10 1.7E-14 110.9 30.2 269 148-429 253-536 (553)
67 PF12569 NARP1: NMDA receptor- 99.4 3.4E-08 7.4E-13 95.8 37.9 296 157-462 10-333 (517)
68 KOG4162 Predicted calmodulin-b 99.4 1.4E-07 3.1E-12 91.2 41.2 409 59-501 319-783 (799)
69 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 104.0 25.9 241 259-500 199-478 (508)
70 KOG4318 Bicoid mRNA stability 99.3 6.5E-10 1.4E-14 108.3 23.8 252 139-414 13-286 (1088)
71 KOG4318 Bicoid mRNA stability 99.3 5.5E-09 1.2E-13 102.1 30.0 258 55-340 17-282 (1088)
72 KOG2376 Signal recognition par 99.3 2.2E-07 4.9E-12 87.2 39.2 408 67-521 16-506 (652)
73 KOG1156 N-terminal acetyltrans 99.3 1E-07 2.2E-12 90.5 37.3 425 66-531 11-463 (700)
74 KOG3785 Uncharacterized conser 99.3 9.9E-08 2.2E-12 83.8 33.8 408 41-476 36-498 (557)
75 KOG0548 Molecular co-chaperone 99.3 8.6E-08 1.9E-12 89.1 33.2 410 71-521 10-473 (539)
76 PF13041 PPR_2: PPR repeat fam 99.3 1.9E-11 4.1E-16 78.3 6.6 50 470-519 1-50 (50)
77 KOG4162 Predicted calmodulin-b 99.3 2.5E-07 5.5E-12 89.6 36.7 370 147-527 319-774 (799)
78 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.6E-13 93.6 26.7 229 274-512 41-275 (296)
79 PF13041 PPR_2: PPR repeat fam 99.2 2.7E-11 5.8E-16 77.6 6.3 49 184-232 1-49 (50)
80 COG3063 PilF Tfp pilus assembl 99.2 4.3E-09 9.4E-14 86.9 20.5 210 295-513 36-246 (250)
81 KOG4340 Uncharacterized conser 99.2 4.3E-08 9.3E-13 84.0 26.9 393 66-500 13-442 (459)
82 KOG1174 Anaphase-promoting com 99.2 9.2E-07 2E-11 79.6 36.1 289 164-464 209-501 (564)
83 COG3063 PilF Tfp pilus assembl 99.2 2.9E-08 6.3E-13 82.2 24.8 198 260-461 36-234 (250)
84 KOG1840 Kinesin light chain [C 99.2 4.6E-09 1E-13 100.5 23.0 98 116-213 199-310 (508)
85 cd05804 StaR_like StaR_like; a 99.2 5.7E-07 1.2E-11 85.9 34.9 201 300-501 120-336 (355)
86 PRK11189 lipoprotein NlpI; Pro 99.1 8.2E-08 1.8E-12 88.2 27.1 197 116-324 64-266 (296)
87 KOG2376 Signal recognition par 99.1 4.1E-06 8.9E-11 79.0 37.0 415 39-497 24-516 (652)
88 cd05804 StaR_like StaR_like; a 99.1 9.3E-07 2E-11 84.4 34.1 201 113-322 3-214 (355)
89 PRK04841 transcriptional regul 99.1 1.7E-06 3.6E-11 93.7 38.0 377 121-502 346-761 (903)
90 KOG4340 Uncharacterized conser 99.1 2.6E-07 5.7E-12 79.3 23.9 330 119-461 13-373 (459)
91 KOG0624 dsRNA-activated protei 99.0 5E-06 1.1E-10 73.1 31.3 88 269-358 165-252 (504)
92 KOG0548 Molecular co-chaperone 99.0 1.1E-05 2.4E-10 75.4 35.3 386 37-462 12-454 (539)
93 PF04733 Coatomer_E: Coatomer 99.0 2.9E-08 6.2E-13 89.7 18.0 250 160-428 10-265 (290)
94 KOG0624 dsRNA-activated protei 99.0 1.3E-05 2.9E-10 70.5 36.2 320 60-429 35-371 (504)
95 KOG3617 WD40 and TPR repeat-co 99.0 1.1E-05 2.4E-10 79.0 35.5 388 61-526 755-1190(1416)
96 PRK04841 transcriptional regul 99.0 7.4E-06 1.6E-10 88.7 39.3 340 122-464 380-761 (903)
97 KOG1125 TPR repeat-containing 99.0 1E-07 2.2E-12 89.4 20.4 246 267-524 293-559 (579)
98 PF04733 Coatomer_E: Coatomer 99.0 6.7E-08 1.5E-12 87.3 18.0 250 237-507 14-269 (290)
99 KOG0985 Vesicle coat protein c 99.0 3.2E-05 6.8E-10 77.6 37.1 333 150-531 935-1303(1666)
100 KOG1127 TPR repeat-containing 98.9 1.9E-06 4E-11 86.0 28.4 442 62-534 474-950 (1238)
101 KOG1125 TPR repeat-containing 98.9 2.8E-07 6.1E-12 86.5 20.6 251 237-494 298-564 (579)
102 KOG1128 Uncharacterized conser 98.9 8.8E-07 1.9E-11 85.5 23.6 232 261-516 400-632 (777)
103 PLN02789 farnesyltranstransfer 98.8 1.2E-05 2.6E-10 73.9 28.5 231 271-512 49-311 (320)
104 PLN02789 farnesyltranstransfer 98.8 7E-06 1.5E-10 75.4 26.5 215 118-341 39-267 (320)
105 KOG1127 TPR repeat-containing 98.8 4.6E-05 1E-09 76.5 32.7 425 42-493 473-944 (1238)
106 PRK10370 formate-dependent nit 98.8 3.2E-06 7E-11 72.2 20.8 119 377-501 52-173 (198)
107 KOG0985 Vesicle coat protein c 98.7 0.00041 8.9E-09 70.0 40.3 263 60-387 981-1243(1666)
108 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 70.9 15.9 100 402-508 27-126 (144)
109 KOG1914 mRNA cleavage and poly 98.7 0.00025 5.4E-09 66.7 40.7 415 59-500 16-500 (656)
110 TIGR03302 OM_YfiO outer membra 98.7 5.2E-06 1.1E-10 74.0 21.8 189 292-501 31-232 (235)
111 KOG1128 Uncharacterized conser 98.7 1.1E-05 2.4E-10 78.2 24.5 234 225-484 402-635 (777)
112 KOG1070 rRNA processing protei 98.7 1E-05 2.2E-10 83.7 25.2 223 291-522 1455-1686(1710)
113 KOG1914 mRNA cleavage and poly 98.7 0.0003 6.5E-09 66.2 36.2 402 113-524 17-489 (656)
114 KOG3616 Selective LIM binding 98.7 5.3E-05 1.1E-09 73.5 28.2 55 122-178 621-675 (1636)
115 PRK15359 type III secretion sy 98.7 2.9E-06 6.2E-11 68.5 17.0 122 350-481 14-135 (144)
116 PRK10370 formate-dependent nit 98.7 1E-05 2.3E-10 69.1 21.0 120 307-429 52-174 (198)
117 KOG3617 WD40 and TPR repeat-co 98.7 0.0006 1.3E-08 67.4 36.7 264 63-355 858-1171(1416)
118 KOG1070 rRNA processing protei 98.7 3.2E-05 7E-10 80.2 27.3 201 188-396 1460-1666(1710)
119 COG5010 TadD Flp pilus assembl 98.7 9.6E-06 2.1E-10 69.1 19.9 160 333-499 70-229 (257)
120 COG5010 TadD Flp pilus assembl 98.6 8.8E-06 1.9E-10 69.3 19.3 164 115-286 66-229 (257)
121 KOG3616 Selective LIM binding 98.6 8.3E-05 1.8E-09 72.2 27.7 263 162-464 743-1025(1636)
122 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.4E-10 71.9 20.7 186 257-461 31-230 (235)
123 TIGR02552 LcrH_SycD type III s 98.6 3E-06 6.4E-11 68.1 15.2 121 387-515 6-126 (135)
124 KOG3081 Vesicle coat complex C 98.6 9.1E-05 2E-09 63.2 23.7 250 159-428 16-271 (299)
125 PF12854 PPR_1: PPR repeat 98.6 8.5E-08 1.8E-12 54.9 3.9 32 181-212 2-33 (34)
126 PRK15179 Vi polysaccharide bio 98.6 5.9E-05 1.3E-09 76.6 26.4 162 325-499 82-243 (694)
127 PRK15179 Vi polysaccharide bio 98.6 3.1E-05 6.8E-10 78.6 24.4 185 290-484 82-267 (694)
128 COG4783 Putative Zn-dependent 98.6 5.3E-05 1.2E-09 70.4 23.3 140 338-501 315-454 (484)
129 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 53.8 4.2 32 467-498 2-33 (34)
130 PRK14720 transcript cleavage f 98.5 5.7E-05 1.2E-09 77.6 25.0 255 8-305 5-268 (906)
131 PRK14720 transcript cleavage f 98.5 0.00017 3.7E-09 74.2 28.1 59 261-321 118-176 (906)
132 COG4783 Putative Zn-dependent 98.5 0.00021 4.6E-09 66.5 25.4 200 239-462 252-453 (484)
133 KOG3081 Vesicle coat complex C 98.5 0.0002 4.3E-09 61.3 22.5 139 301-450 115-257 (299)
134 KOG3060 Uncharacterized conser 98.4 0.00028 6.2E-09 59.9 22.9 189 237-429 25-221 (289)
135 KOG3060 Uncharacterized conser 98.4 0.00045 9.8E-09 58.7 24.0 189 271-463 24-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 2.8E-05 6.2E-10 62.3 15.0 98 364-463 17-114 (135)
137 KOG2053 Mitochondrial inherita 98.3 0.0044 9.6E-08 62.3 42.3 437 43-523 25-523 (932)
138 KOG2053 Mitochondrial inherita 98.3 0.0073 1.6E-07 60.8 40.3 389 40-462 56-535 (932)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8E-05 1.7E-09 69.9 17.1 123 368-499 173-295 (395)
140 PF09976 TPR_21: Tetratricopep 98.2 0.00011 2.3E-09 59.7 15.5 86 372-459 56-143 (145)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00015 3.2E-09 58.8 16.1 128 365-498 13-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00015 3.2E-09 68.2 17.4 116 303-424 178-293 (395)
143 TIGR00756 PPR pentatricopeptid 98.1 7.2E-06 1.6E-10 47.7 4.5 33 474-506 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 98.1 7.9E-06 1.7E-10 47.2 4.3 33 473-505 2-34 (34)
145 PLN03088 SGT1, suppressor of 98.0 0.0002 4.4E-09 67.5 15.3 90 371-462 9-98 (356)
146 KOG0553 TPR repeat-containing 98.0 0.0001 2.2E-09 64.3 11.6 99 410-515 92-190 (304)
147 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 46.4 4.4 33 188-220 2-34 (35)
148 cd00189 TPR Tetratricopeptide 98.0 0.00018 3.9E-09 53.3 11.4 93 403-500 4-96 (100)
149 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.8E-10 45.7 4.1 32 188-219 3-34 (34)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0006 1.3E-08 53.1 14.1 100 401-501 4-105 (119)
151 PF05843 Suf: Suppressor of fo 97.9 0.00026 5.6E-09 64.4 13.3 145 365-517 2-150 (280)
152 PRK02603 photosystem I assembl 97.9 0.00078 1.7E-08 56.5 15.3 130 365-523 36-167 (172)
153 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.4E-09 67.0 13.1 119 148-269 63-183 (429)
154 CHL00033 ycf3 photosystem I as 97.9 0.00034 7.4E-09 58.4 12.6 60 368-427 39-100 (168)
155 PF10037 MRP-S27: Mitochondria 97.9 0.00026 5.7E-09 66.8 12.8 124 254-377 61-186 (429)
156 PF07079 DUF1347: Protein of u 97.9 0.023 5E-07 52.9 37.9 440 37-513 16-531 (549)
157 cd00189 TPR Tetratricopeptide 97.9 0.00031 6.7E-09 51.9 11.3 94 367-462 3-96 (100)
158 PRK15363 pathogenicity island 97.9 0.0042 9E-08 49.6 17.5 92 369-462 40-131 (157)
159 COG4700 Uncharacterized protei 97.9 0.0036 7.8E-08 50.7 16.9 158 335-499 62-220 (251)
160 PRK10153 DNA-binding transcrip 97.8 0.0015 3.3E-08 64.5 18.2 144 360-511 333-490 (517)
161 KOG2796 Uncharacterized conser 97.8 0.008 1.7E-07 51.6 19.6 140 366-511 179-323 (366)
162 CHL00033 ycf3 photosystem I as 97.8 0.00078 1.7E-08 56.2 13.8 140 380-523 15-167 (168)
163 COG4235 Cytochrome c biogenesi 97.8 0.0016 3.5E-08 57.4 15.9 121 387-515 145-268 (287)
164 PF12895 Apc3: Anaphase-promot 97.8 8E-05 1.7E-09 53.8 6.7 81 412-497 2-83 (84)
165 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.6E-08 51.4 14.0 20 441-460 83-102 (119)
166 PF12895 Apc3: Anaphase-promot 97.8 5.8E-05 1.3E-09 54.5 5.5 80 378-459 3-83 (84)
167 PRK15363 pathogenicity island 97.8 0.0026 5.6E-08 50.8 14.8 98 399-501 35-132 (157)
168 PF08579 RPM2: Mitochondrial r 97.8 0.00042 9.1E-09 51.0 9.6 76 121-196 30-114 (120)
169 KOG0550 Molecular chaperone (D 97.8 0.032 6.9E-07 51.3 23.4 265 121-393 54-350 (486)
170 KOG0553 TPR repeat-containing 97.7 0.00056 1.2E-08 59.8 11.8 98 337-438 89-186 (304)
171 PF08579 RPM2: Mitochondrial r 97.7 0.00042 9.1E-09 51.0 9.3 79 155-233 29-116 (120)
172 PLN03088 SGT1, suppressor of 97.7 0.0015 3.2E-08 61.7 15.7 91 336-428 9-99 (356)
173 PRK10866 outer membrane biogen 97.7 0.016 3.5E-07 51.4 21.0 58 122-180 38-98 (243)
174 PRK02603 photosystem I assembl 97.7 0.003 6.4E-08 52.9 15.3 113 328-462 34-148 (172)
175 PRK10866 outer membrane biogen 97.7 0.019 4.1E-07 50.9 20.9 184 294-499 32-239 (243)
176 PF01535 PPR: PPR repeat; Int 97.6 7.8E-05 1.7E-09 41.8 3.6 30 474-503 2-31 (31)
177 KOG0550 Molecular chaperone (D 97.6 0.0069 1.5E-07 55.5 17.3 158 302-463 177-350 (486)
178 PF13414 TPR_11: TPR repeat; P 97.6 0.00032 7E-09 48.3 7.3 64 433-500 2-66 (69)
179 PF14938 SNAP: Soluble NSF att 97.6 0.015 3.2E-07 53.2 19.7 206 117-356 36-264 (282)
180 PF05843 Suf: Suppressor of fo 97.6 0.0018 3.8E-08 58.9 13.4 131 295-428 2-136 (280)
181 PF12688 TPR_5: Tetratrico pep 97.6 0.0074 1.6E-07 46.4 14.6 92 407-499 9-102 (120)
182 PRK10153 DNA-binding transcrip 97.6 0.009 2E-07 59.1 18.8 136 326-464 334-483 (517)
183 PF01535 PPR: PPR repeat; Int 97.6 0.00013 2.7E-09 40.9 3.7 26 297-322 3-28 (31)
184 PF13432 TPR_16: Tetratricopep 97.6 0.0004 8.7E-09 47.2 6.9 62 440-507 3-64 (65)
185 PF14559 TPR_19: Tetratricopep 97.5 0.00049 1.1E-08 47.3 7.0 64 445-514 2-65 (68)
186 PF12688 TPR_5: Tetratrico pep 97.5 0.0087 1.9E-07 46.0 14.0 91 370-461 7-102 (120)
187 PF06239 ECSIT: Evolutionarily 97.5 0.0036 7.8E-08 52.4 12.6 104 149-274 45-153 (228)
188 COG4235 Cytochrome c biogenesi 97.5 0.017 3.6E-07 51.2 17.3 105 356-463 149-256 (287)
189 PF14938 SNAP: Soluble NSF att 97.4 0.0094 2E-07 54.5 16.3 131 367-499 117-264 (282)
190 KOG2041 WD40 repeat protein [G 97.4 0.15 3.2E-06 50.3 29.2 86 113-210 689-784 (1189)
191 PF13414 TPR_11: TPR repeat; P 97.4 0.0009 2E-08 46.1 7.2 64 398-462 2-66 (69)
192 PF13281 DUF4071: Domain of un 97.4 0.095 2E-06 48.9 21.8 175 334-512 146-343 (374)
193 PF03704 BTAD: Bacterial trans 97.4 0.0072 1.6E-07 49.0 13.4 75 435-513 63-142 (146)
194 PF06239 ECSIT: Evolutionarily 97.4 0.0027 5.9E-08 53.1 10.6 105 220-343 46-152 (228)
195 PF13525 YfiO: Outer membrane 97.4 0.026 5.6E-07 48.7 17.3 61 120-180 9-71 (203)
196 KOG1130 Predicted G-alpha GTPa 97.4 0.0026 5.7E-08 58.0 11.2 133 330-462 196-343 (639)
197 KOG2041 WD40 repeat protein [G 97.3 0.042 9.1E-07 54.0 19.3 177 183-387 689-875 (1189)
198 PF13525 YfiO: Outer membrane 97.3 0.073 1.6E-06 45.9 19.0 57 302-358 13-71 (203)
199 PF13371 TPR_9: Tetratricopept 97.3 0.0021 4.6E-08 44.8 7.9 66 442-513 3-68 (73)
200 PF14559 TPR_19: Tetratricopep 97.3 0.00095 2.1E-08 45.8 6.0 52 128-180 3-54 (68)
201 PRK10803 tol-pal system protei 97.3 0.015 3.3E-07 51.9 15.0 104 401-509 145-252 (263)
202 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.2E-08 43.8 7.1 53 408-461 6-58 (65)
203 COG4700 Uncharacterized protei 97.2 0.084 1.8E-06 43.1 19.3 158 298-461 60-220 (251)
204 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.21 4.5E-06 46.8 35.7 391 113-518 39-546 (660)
205 PF13424 TPR_12: Tetratricopep 97.2 0.0023 5E-08 45.3 7.4 66 434-500 5-74 (78)
206 KOG2796 Uncharacterized conser 97.1 0.14 3.1E-06 44.2 22.0 57 300-356 183-239 (366)
207 PRK15331 chaperone protein Sic 97.1 0.07 1.5E-06 43.0 15.2 87 374-462 47-133 (165)
208 PF07079 DUF1347: Protein of u 97.0 0.35 7.6E-06 45.5 37.6 404 118-533 48-521 (549)
209 KOG1130 Predicted G-alpha GTPa 96.9 0.018 3.9E-07 52.8 11.9 136 366-501 197-344 (639)
210 PRK10803 tol-pal system protei 96.9 0.028 6.1E-07 50.2 13.1 97 332-428 146-246 (263)
211 PRK15331 chaperone protein Sic 96.9 0.11 2.3E-06 42.0 14.7 100 405-512 43-142 (165)
212 PF03704 BTAD: Bacterial trans 96.9 0.11 2.4E-06 42.0 15.5 59 367-426 65-123 (146)
213 PF04840 Vps16_C: Vps16, C-ter 96.8 0.43 9.2E-06 44.2 25.7 80 370-459 183-262 (319)
214 KOG1538 Uncharacterized conser 96.8 0.61 1.3E-05 45.9 21.7 56 328-392 746-801 (1081)
215 PF04840 Vps16_C: Vps16, C-ter 96.8 0.45 9.7E-06 44.0 28.9 111 330-460 178-288 (319)
216 PF13371 TPR_9: Tetratricopept 96.7 0.0079 1.7E-07 41.8 6.9 54 408-462 4-57 (73)
217 KOG2280 Vacuolar assembly/sort 96.7 0.79 1.7E-05 46.0 30.9 322 179-534 425-771 (829)
218 KOG1538 Uncharacterized conser 96.7 0.1 2.2E-06 51.0 15.5 91 189-285 559-658 (1081)
219 PF13281 DUF4071: Domain of un 96.6 0.6 1.3E-05 43.7 20.0 32 307-338 195-226 (374)
220 KOG2114 Vacuolar assembly/sort 96.6 1.1 2.3E-05 45.8 26.6 182 65-286 336-517 (933)
221 PF13424 TPR_12: Tetratricopep 96.5 0.0078 1.7E-07 42.5 5.8 63 400-462 6-74 (78)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.045 9.7E-07 51.7 11.7 63 398-462 74-140 (453)
223 COG3898 Uncharacterized membra 96.4 0.75 1.6E-05 42.5 30.2 120 371-501 270-392 (531)
224 KOG4555 TPR repeat-containing 96.4 0.06 1.3E-06 41.0 9.8 94 408-502 52-145 (175)
225 COG3898 Uncharacterized membra 96.3 0.92 2E-05 41.9 31.7 88 124-215 128-217 (531)
226 PF12921 ATP13: Mitochondrial 96.3 0.12 2.7E-06 40.1 11.5 99 398-519 1-100 (126)
227 PF08631 SPO22: Meiosis protei 96.3 0.89 1.9E-05 41.4 25.7 102 223-327 86-190 (278)
228 COG3118 Thioredoxin domain-con 96.2 0.8 1.7E-05 40.8 18.1 145 338-487 143-287 (304)
229 PRK11906 transcriptional regul 96.2 0.48 1E-05 45.2 16.6 113 380-497 320-432 (458)
230 PF12921 ATP13: Mitochondrial 96.1 0.12 2.6E-06 40.2 10.7 97 363-481 1-97 (126)
231 KOG2610 Uncharacterized conser 96.1 0.19 4.1E-06 45.2 12.9 154 305-461 114-274 (491)
232 KOG1585 Protein required for f 96.1 0.8 1.7E-05 39.4 16.5 209 261-496 33-251 (308)
233 KOG0543 FKBP-type peptidyl-pro 96.1 0.096 2.1E-06 48.4 11.2 127 369-500 213-354 (397)
234 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.13 2.9E-06 48.7 11.7 66 113-180 72-141 (453)
235 PF10300 DUF3808: Protein of u 95.9 0.56 1.2E-05 46.3 16.7 83 131-215 248-334 (468)
236 KOG3941 Intermediate in Toll s 95.9 0.13 2.9E-06 44.9 10.6 103 398-522 66-173 (406)
237 COG4105 ComL DNA uptake lipopr 95.8 1.1 2.5E-05 39.1 20.7 76 121-197 39-117 (254)
238 COG1729 Uncharacterized protei 95.8 0.22 4.8E-06 43.7 12.0 99 401-501 144-244 (262)
239 COG3118 Thioredoxin domain-con 95.8 1.3 2.8E-05 39.5 17.5 144 267-414 142-287 (304)
240 PRK11906 transcriptional regul 95.8 0.66 1.4E-05 44.3 15.6 141 380-528 274-428 (458)
241 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.9 4.1E-05 40.8 31.4 375 136-525 29-520 (660)
242 KOG0543 FKBP-type peptidyl-pro 95.7 0.28 6E-06 45.5 12.7 97 364-462 257-354 (397)
243 PF13512 TPR_18: Tetratricopep 95.7 0.77 1.7E-05 36.2 13.7 55 410-464 21-77 (142)
244 KOG2610 Uncharacterized conser 95.6 0.45 9.7E-06 42.9 12.8 162 270-434 114-283 (491)
245 PF04053 Coatomer_WDAD: Coatom 95.5 0.41 8.8E-06 46.5 13.9 156 270-460 272-428 (443)
246 smart00299 CLH Clathrin heavy 95.5 1 2.2E-05 36.1 14.8 42 335-377 13-54 (140)
247 PF10300 DUF3808: Protein of u 95.5 3 6.4E-05 41.3 21.8 161 262-426 191-374 (468)
248 KOG4555 TPR repeat-containing 95.4 0.52 1.1E-05 36.1 11.0 93 123-216 50-145 (175)
249 smart00299 CLH Clathrin heavy 95.4 1.1 2.4E-05 35.8 15.3 41 192-233 13-53 (140)
250 COG4105 ComL DNA uptake lipopr 95.4 1.7 3.8E-05 37.9 21.6 61 439-500 172-232 (254)
251 COG0457 NrfG FOG: TPR repeat [ 95.2 2 4.3E-05 37.6 30.3 222 273-500 37-264 (291)
252 PF13428 TPR_14: Tetratricopep 95.0 0.078 1.7E-06 32.3 4.9 40 117-157 2-41 (44)
253 PF13512 TPR_18: Tetratricopep 95.0 0.47 1E-05 37.4 10.2 74 75-164 22-95 (142)
254 KOG1941 Acetylcholine receptor 95.0 1.9 4.2E-05 39.5 15.2 129 333-462 126-274 (518)
255 KOG1941 Acetylcholine receptor 95.0 1.9 4.1E-05 39.6 15.1 205 295-499 44-273 (518)
256 PF13428 TPR_14: Tetratricopep 94.9 0.1 2.2E-06 31.8 5.3 28 367-394 4-31 (44)
257 PF04053 Coatomer_WDAD: Coatom 94.9 1.3 2.7E-05 43.2 15.0 133 28-179 262-401 (443)
258 COG1729 Uncharacterized protei 94.8 0.59 1.3E-05 41.1 11.4 97 117-215 143-244 (262)
259 KOG1585 Protein required for f 94.6 2.8 6.1E-05 36.3 15.0 192 34-247 38-250 (308)
260 KOG3941 Intermediate in Toll s 94.6 0.35 7.7E-06 42.4 9.2 105 183-309 64-173 (406)
261 COG4785 NlpI Lipoprotein NlpI, 94.5 2.5 5.4E-05 35.8 13.5 204 304-521 75-285 (297)
262 COG3629 DnrI DNA-binding trans 94.4 0.58 1.3E-05 41.8 10.5 78 435-516 154-236 (280)
263 KOG2114 Vacuolar assembly/sort 94.3 0.87 1.9E-05 46.3 12.6 175 263-460 338-516 (933)
264 KOG1920 IkappaB kinase complex 94.3 9.3 0.0002 41.1 23.3 127 121-252 682-820 (1265)
265 KOG1258 mRNA processing protei 94.2 6.4 0.00014 38.9 37.8 387 117-521 46-489 (577)
266 COG3629 DnrI DNA-binding trans 94.0 0.74 1.6E-05 41.2 10.4 77 366-443 155-236 (280)
267 PF10345 Cohesin_load: Cohesin 93.9 8.9 0.00019 39.6 41.2 190 46-250 40-251 (608)
268 PF08631 SPO22: Meiosis protei 93.9 5 0.00011 36.6 27.0 167 330-499 85-273 (278)
269 PF00515 TPR_1: Tetratricopept 93.9 0.18 3.9E-06 28.5 4.4 27 474-500 3-29 (34)
270 PF13170 DUF4003: Protein of u 93.9 5.2 0.00011 36.7 20.0 128 241-370 79-223 (297)
271 COG4649 Uncharacterized protei 93.6 3.3 7.2E-05 33.7 13.7 126 162-288 69-196 (221)
272 KOG2280 Vacuolar assembly/sort 93.5 9.6 0.00021 38.8 34.4 113 363-497 683-795 (829)
273 COG0457 NrfG FOG: TPR repeat [ 93.5 4.7 0.0001 35.1 29.3 201 260-462 60-264 (291)
274 PF09205 DUF1955: Domain of un 93.3 3 6.4E-05 32.3 13.6 63 332-395 89-151 (161)
275 PF13176 TPR_7: Tetratricopept 93.3 0.23 5E-06 28.6 4.2 27 474-500 1-27 (36)
276 PF07035 Mic1: Colon cancer-as 93.2 4 8.7E-05 33.5 15.7 32 173-204 16-47 (167)
277 PF10345 Cohesin_load: Cohesin 93.2 12 0.00025 38.8 38.8 410 117-529 60-599 (608)
278 PF10602 RPN7: 26S proteasome 93.1 1.7 3.8E-05 36.3 10.9 61 366-426 38-100 (177)
279 PF09205 DUF1955: Domain of un 93.1 3.3 7.1E-05 32.1 13.1 60 369-429 91-150 (161)
280 PF07035 Mic1: Colon cancer-as 93.1 4.2 9.2E-05 33.3 14.6 101 207-320 15-115 (167)
281 PF07719 TPR_2: Tetratricopept 93.1 0.26 5.7E-06 27.7 4.3 27 474-500 3-29 (34)
282 PF13176 TPR_7: Tetratricopept 93.0 0.24 5.1E-06 28.6 4.0 27 436-462 1-27 (36)
283 PF02259 FAT: FAT domain; Int 93.0 8.4 0.00018 36.5 22.5 52 158-213 5-56 (352)
284 PF04184 ST7: ST7 protein; In 92.9 9.5 0.00021 37.0 20.7 57 334-390 264-321 (539)
285 PF13170 DUF4003: Protein of u 92.9 7.4 0.00016 35.7 20.3 140 202-343 78-231 (297)
286 PF10602 RPN7: 26S proteasome 92.7 2.8 6E-05 35.1 11.5 64 330-393 37-102 (177)
287 PF13431 TPR_17: Tetratricopep 92.7 0.16 3.6E-06 28.8 2.9 24 469-492 10-33 (34)
288 PF04184 ST7: ST7 protein; In 92.6 11 0.00023 36.7 16.8 58 403-460 263-321 (539)
289 PF11207 DUF2989: Protein of u 92.6 2.1 4.5E-05 36.1 10.2 81 410-492 118-198 (203)
290 PRK15180 Vi polysaccharide bio 92.6 10 0.00022 36.4 25.2 120 91-216 301-421 (831)
291 PF04097 Nic96: Nup93/Nic96; 92.3 15 0.00033 37.8 25.1 61 121-182 116-183 (613)
292 PRK09687 putative lyase; Provi 91.7 10 0.00022 34.5 28.6 235 257-519 35-279 (280)
293 COG3947 Response regulator con 91.6 9.7 0.00021 34.1 16.3 71 436-510 281-356 (361)
294 PF06552 TOM20_plant: Plant sp 91.6 2.1 4.5E-05 35.2 8.9 66 380-448 7-83 (186)
295 PF13431 TPR_17: Tetratricopep 91.5 0.25 5.5E-06 28.0 2.8 31 423-454 3-33 (34)
296 PF09613 HrpB1_HrpK: Bacterial 91.5 6.6 0.00014 31.8 12.2 57 123-181 51-107 (160)
297 PF00515 TPR_1: Tetratricopept 91.2 0.65 1.4E-05 26.1 4.4 29 435-463 2-30 (34)
298 PF13374 TPR_10: Tetratricopep 91.2 0.54 1.2E-05 27.9 4.3 29 435-463 3-31 (42)
299 PF08424 NRDE-2: NRDE-2, neces 91.1 13 0.00028 34.7 18.7 58 383-442 50-107 (321)
300 COG1747 Uncharacterized N-term 90.9 17 0.00036 35.5 23.6 95 258-357 65-159 (711)
301 COG4649 Uncharacterized protei 90.8 8 0.00017 31.6 15.8 52 410-461 143-194 (221)
302 PF07719 TPR_2: Tetratricopept 90.6 0.84 1.8E-05 25.5 4.5 28 436-463 3-30 (34)
303 PRK15180 Vi polysaccharide bio 89.7 20 0.00043 34.5 15.6 126 301-429 296-421 (831)
304 KOG1920 IkappaB kinase complex 89.5 35 0.00076 37.1 22.1 102 269-390 949-1052(1265)
305 COG1747 Uncharacterized N-term 89.4 22 0.00048 34.6 24.1 165 328-501 65-234 (711)
306 PF09613 HrpB1_HrpK: Bacterial 89.4 10 0.00022 30.8 13.9 51 376-427 22-72 (160)
307 COG4785 NlpI Lipoprotein NlpI, 89.2 13 0.00028 31.8 18.1 160 185-358 98-266 (297)
308 KOG4234 TPR repeat-containing 89.2 11 0.00023 31.8 11.1 90 372-462 103-196 (271)
309 PF13181 TPR_8: Tetratricopept 89.2 0.75 1.6E-05 25.8 3.5 26 475-500 4-29 (34)
310 KOG4570 Uncharacterized conser 88.4 6 0.00013 35.7 9.8 103 181-288 59-164 (418)
311 KOG1550 Extracellular protein 88.3 32 0.00069 35.1 25.6 79 132-216 228-323 (552)
312 PF13374 TPR_10: Tetratricopep 87.9 1.5 3.3E-05 25.8 4.5 29 472-500 2-30 (42)
313 KOG0276 Vesicle coat complex C 87.5 12 0.00025 37.2 11.9 126 63-211 614-746 (794)
314 TIGR03504 FimV_Cterm FimV C-te 87.0 1.2 2.6E-05 27.0 3.5 25 478-502 5-29 (44)
315 PF13181 TPR_8: Tetratricopept 87.0 2 4.2E-05 24.0 4.3 30 435-464 2-31 (34)
316 KOG4648 Uncharacterized conser 87.0 5 0.00011 36.6 8.6 90 371-462 104-193 (536)
317 COG2976 Uncharacterized protei 86.6 18 0.00039 30.4 14.4 91 121-216 94-189 (207)
318 PF11207 DUF2989: Protein of u 85.9 9.9 0.00021 32.1 9.3 72 346-418 123-197 (203)
319 KOG4570 Uncharacterized conser 85.9 11 0.00023 34.2 10.0 99 258-358 63-164 (418)
320 PF02259 FAT: FAT domain; Int 85.8 32 0.0007 32.5 25.2 54 192-252 4-57 (352)
321 KOG0890 Protein kinase of the 85.7 85 0.0018 37.3 26.9 321 121-462 1388-1730(2382)
322 PF02284 COX5A: Cytochrome c o 85.5 7.2 0.00016 28.6 7.2 47 382-428 28-74 (108)
323 PF00637 Clathrin: Region in C 85.2 0.52 1.1E-05 37.9 1.7 53 336-388 14-66 (143)
324 COG4455 ImpE Protein of avirul 85.2 8.4 0.00018 32.9 8.5 77 366-443 3-81 (273)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 85.1 9.2 0.0002 27.8 7.5 44 383-426 26-69 (103)
326 PF12862 Apc5: Anaphase-promot 85.1 6.4 0.00014 28.8 7.3 73 445-517 9-87 (94)
327 KOG2066 Vacuolar assembly/sort 84.8 52 0.0011 34.1 28.7 141 117-287 393-533 (846)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 8.3 0.00018 28.0 7.1 44 417-460 25-68 (103)
329 KOG4234 TPR repeat-containing 84.3 24 0.00052 29.8 10.7 88 304-393 105-197 (271)
330 KOG0276 Vesicle coat complex C 83.9 19 0.00042 35.8 11.5 131 297-460 617-747 (794)
331 PF13174 TPR_6: Tetratricopept 83.4 1.7 3.6E-05 24.0 2.9 24 477-500 5-28 (33)
332 KOG4648 Uncharacterized conser 83.1 4 8.7E-05 37.2 6.3 93 336-433 104-197 (536)
333 PF02284 COX5A: Cytochrome c o 82.5 11 0.00023 27.8 7.1 43 136-178 30-72 (108)
334 COG3947 Response regulator con 82.5 37 0.0008 30.6 16.8 59 367-426 282-340 (361)
335 TIGR02561 HrpB1_HrpK type III 82.1 24 0.00052 28.2 12.7 53 376-429 22-74 (153)
336 PF14853 Fis1_TPR_C: Fis1 C-te 82.1 9.5 0.00021 24.3 6.1 37 477-515 6-42 (53)
337 PF07721 TPR_4: Tetratricopept 82.1 2.3 5E-05 22.2 2.9 21 476-496 5-25 (26)
338 PF08424 NRDE-2: NRDE-2, neces 81.1 48 0.001 31.0 18.2 117 346-464 48-184 (321)
339 PF13929 mRNA_stabil: mRNA sta 81.0 42 0.00092 30.3 15.0 137 131-270 143-289 (292)
340 PF00244 14-3-3: 14-3-3 protei 80.7 35 0.00076 30.1 11.4 52 450-501 142-198 (236)
341 COG2976 Uncharacterized protei 80.5 34 0.00073 28.9 14.7 130 366-502 56-189 (207)
342 PF06552 TOM20_plant: Plant sp 80.4 32 0.0007 28.6 10.8 67 345-412 7-82 (186)
343 PF00637 Clathrin: Region in C 80.1 0.68 1.5E-05 37.2 0.5 84 122-212 13-96 (143)
344 COG5159 RPN6 26S proteasome re 79.3 43 0.00093 30.1 11.0 95 263-357 129-234 (421)
345 COG4455 ImpE Protein of avirul 79.2 17 0.00037 31.1 8.2 77 331-408 3-81 (273)
346 smart00028 TPR Tetratricopepti 79.0 4 8.6E-05 21.6 3.5 27 474-500 3-29 (34)
347 PF13174 TPR_6: Tetratricopept 78.9 3.9 8.5E-05 22.4 3.4 25 191-215 5-29 (33)
348 KOG1258 mRNA processing protei 78.3 78 0.0017 31.7 40.1 184 293-486 296-489 (577)
349 TIGR03504 FimV_Cterm FimV C-te 78.2 5.9 0.00013 24.0 4.0 23 370-392 5-27 (44)
350 TIGR02561 HrpB1_HrpK type III 77.8 34 0.00075 27.4 13.8 51 341-393 22-73 (153)
351 PF10579 Rapsyn_N: Rapsyn N-te 77.7 17 0.00036 25.4 6.5 46 411-456 18-65 (80)
352 PF07575 Nucleopor_Nup85: Nup8 76.8 94 0.002 31.9 19.6 27 116-143 149-175 (566)
353 KOG2471 TPR repeat-containing 76.8 78 0.0017 31.0 16.9 82 437-519 286-381 (696)
354 KOG1550 Extracellular protein 76.5 95 0.002 31.8 25.8 245 202-462 228-503 (552)
355 PF07163 Pex26: Pex26 protein; 75.5 42 0.00091 30.1 9.9 87 266-352 90-181 (309)
356 KOG0403 Neoplastic transformat 75.4 81 0.0017 30.4 26.1 61 438-502 513-573 (645)
357 COG2909 MalT ATP-dependent tra 75.3 1.2E+02 0.0025 32.3 28.6 225 270-497 426-684 (894)
358 KOG0686 COP9 signalosome, subu 74.5 81 0.0018 30.0 18.9 93 117-211 151-254 (466)
359 PRK09687 putative lyase; Provi 74.5 69 0.0015 29.2 28.6 235 149-408 35-276 (280)
360 PF04097 Nic96: Nup93/Nic96; 73.7 1.2E+02 0.0026 31.5 20.7 88 301-393 265-356 (613)
361 PF07163 Pex26: Pex26 protein; 73.6 54 0.0012 29.4 10.1 87 301-387 90-181 (309)
362 PRK10941 hypothetical protein; 72.4 71 0.0015 28.9 11.1 55 442-500 189-243 (269)
363 KOG1464 COP9 signalosome, subu 71.7 74 0.0016 28.3 19.0 208 254-461 21-258 (440)
364 KOG1464 COP9 signalosome, subu 71.7 74 0.0016 28.3 22.7 269 215-498 20-329 (440)
365 PRK12798 chemotaxis protein; R 70.7 1E+02 0.0022 29.6 22.9 83 272-356 125-212 (421)
366 PF11846 DUF3366: Domain of un 70.5 14 0.00031 31.4 6.2 55 38-92 119-173 (193)
367 PRK10941 hypothetical protein; 70.4 83 0.0018 28.5 11.1 81 401-484 183-263 (269)
368 COG0790 FOG: TPR repeat, SEL1 69.7 91 0.002 28.6 21.5 153 128-289 53-221 (292)
369 PF10366 Vps39_1: Vacuolar sor 68.6 24 0.00052 26.6 6.3 27 118-144 41-67 (108)
370 PF11848 DUF3368: Domain of un 68.0 24 0.00052 21.9 5.1 37 480-516 10-46 (48)
371 PF09986 DUF2225: Uncharacteri 67.1 85 0.0018 27.3 11.5 68 437-504 121-197 (214)
372 PF11846 DUF3366: Domain of un 67.1 40 0.00086 28.7 8.2 35 469-505 141-175 (193)
373 PF13762 MNE1: Mitochondrial s 66.8 65 0.0014 25.8 9.5 24 154-177 42-65 (145)
374 PF10579 Rapsyn_N: Rapsyn N-te 65.6 24 0.00052 24.6 5.1 47 376-422 18-66 (80)
375 PF11663 Toxin_YhaV: Toxin wit 65.0 9.1 0.0002 29.8 3.3 32 127-160 106-137 (140)
376 PHA02875 ankyrin repeat protei 64.4 1.4E+02 0.0031 29.0 16.1 209 127-364 10-230 (413)
377 KOG4507 Uncharacterized conser 64.4 51 0.0011 32.9 8.8 87 307-394 620-706 (886)
378 KOG4507 Uncharacterized conser 64.3 58 0.0013 32.6 9.2 58 192-253 648-705 (886)
379 KOG2396 HAT (Half-A-TPR) repea 63.5 1.6E+02 0.0034 29.1 38.8 419 43-500 87-558 (568)
380 PRK11619 lytic murein transgly 62.2 2.1E+02 0.0045 30.0 39.5 324 113-459 126-464 (644)
381 KOG0376 Serine-threonine phosp 61.8 24 0.00051 34.2 6.1 102 410-519 15-117 (476)
382 PF12862 Apc5: Anaphase-promot 61.0 62 0.0013 23.5 9.0 28 438-465 45-72 (94)
383 PF11838 ERAP1_C: ERAP1-like C 61.0 1.4E+02 0.0031 27.7 17.0 150 345-499 146-302 (324)
384 COG5159 RPN6 26S proteasome re 60.8 1.3E+02 0.0028 27.2 16.2 94 369-462 130-234 (421)
385 KOG4077 Cytochrome c oxidase, 60.4 69 0.0015 24.8 7.1 38 354-391 74-111 (149)
386 KOG3364 Membrane protein invol 60.2 84 0.0018 24.8 9.1 71 218-288 29-100 (149)
387 KOG4077 Cytochrome c oxidase, 60.1 74 0.0016 24.7 7.2 46 383-428 68-113 (149)
388 KOG1586 Protein required for f 59.4 1.2E+02 0.0027 26.5 20.4 20 410-429 165-184 (288)
389 KOG4279 Serine/threonine prote 59.3 2.3E+02 0.005 29.6 14.5 34 479-514 373-406 (1226)
390 KOG4642 Chaperone-dependent E3 59.2 1.3E+02 0.0027 26.6 11.1 83 269-355 20-104 (284)
391 KOG3364 Membrane protein invol 58.5 90 0.002 24.6 11.1 73 431-507 29-104 (149)
392 KOG0890 Protein kinase of the 57.9 4.2E+02 0.0091 32.2 35.8 88 121-210 1454-1542(2382)
393 PF10516 SHNi-TPR: SHNi-TPR; 57.5 33 0.00072 20.0 4.1 32 436-467 3-34 (38)
394 COG2909 MalT ATP-dependent tra 57.1 2.7E+02 0.0059 29.8 33.1 228 195-424 424-684 (894)
395 KOG2422 Uncharacterized conser 56.9 2.2E+02 0.0048 28.7 17.7 80 408-487 351-431 (665)
396 PF13762 MNE1: Mitochondrial s 56.9 1E+02 0.0022 24.7 10.4 83 438-520 43-128 (145)
397 KOG4642 Chaperone-dependent E3 56.5 1.4E+02 0.0031 26.3 11.4 118 339-460 20-143 (284)
398 PF09670 Cas_Cas02710: CRISPR- 56.5 1.6E+02 0.0034 28.4 10.9 55 268-323 140-198 (379)
399 PHA02875 ankyrin repeat protei 56.2 2E+02 0.0044 28.0 15.9 39 178-220 22-62 (413)
400 PF14689 SPOB_a: Sensor_kinase 55.9 33 0.00072 22.7 4.5 25 190-214 27-51 (62)
401 cd00280 TRFH Telomeric Repeat 55.8 93 0.002 26.1 7.7 68 415-488 85-159 (200)
402 cd07153 Fur_like Ferric uptake 55.3 31 0.00067 26.3 5.0 50 477-526 5-54 (116)
403 PRK13342 recombination factor 55.2 2.1E+02 0.0046 27.9 18.7 20 165-184 244-263 (413)
404 PF14689 SPOB_a: Sensor_kinase 54.6 42 0.00092 22.2 4.8 25 437-461 26-50 (62)
405 KOG1839 Uncharacterized protei 53.9 2.3E+02 0.0049 31.7 12.3 159 339-497 942-1124(1236)
406 KOG2396 HAT (Half-A-TPR) repea 52.3 2.5E+02 0.0054 27.9 32.9 90 431-526 456-549 (568)
407 PRK10564 maltose regulon perip 52.3 34 0.00073 31.1 5.2 36 183-218 253-289 (303)
408 PF09670 Cas_Cas02710: CRISPR- 51.3 2.3E+02 0.0051 27.3 12.4 55 338-393 140-198 (379)
409 KOG2066 Vacuolar assembly/sort 51.1 3.2E+02 0.007 28.8 26.8 25 298-322 509-533 (846)
410 PRK14963 DNA polymerase III su 50.9 2.8E+02 0.006 28.0 12.2 27 156-183 247-273 (504)
411 COG0735 Fur Fe2+/Zn2+ uptake r 50.8 1.2E+02 0.0025 24.5 7.7 59 141-200 11-69 (145)
412 PF04190 DUF410: Protein of un 50.6 1.9E+02 0.0041 26.0 17.1 83 397-501 88-170 (260)
413 KOG1308 Hsp70-interacting prot 50.6 11 0.00023 34.7 1.9 91 127-219 125-215 (377)
414 TIGR02508 type_III_yscG type I 50.5 1E+02 0.0022 22.9 8.4 60 441-510 46-105 (115)
415 PF13929 mRNA_stabil: mRNA sta 49.8 2E+02 0.0044 26.2 19.5 63 326-388 199-262 (292)
416 COG0735 Fur Fe2+/Zn2+ uptake r 49.6 35 0.00076 27.4 4.6 52 475-526 23-74 (145)
417 cd08819 CARD_MDA5_2 Caspase ac 49.5 96 0.0021 22.3 7.4 36 271-311 48-83 (88)
418 KOG1308 Hsp70-interacting prot 49.3 12 0.00025 34.4 1.9 84 376-462 126-210 (377)
419 PF01475 FUR: Ferric uptake re 49.1 33 0.00072 26.4 4.3 51 476-526 11-61 (120)
420 PRK10564 maltose regulon perip 49.0 38 0.00083 30.8 5.0 46 469-514 253-299 (303)
421 COG5108 RPO41 Mitochondrial DN 48.6 1.4E+02 0.0031 30.5 9.1 91 121-214 33-131 (1117)
422 smart00777 Mad3_BUB1_I Mad3/BU 48.3 1.3E+02 0.0028 23.4 10.8 43 133-175 80-123 (125)
423 PF11663 Toxin_YhaV: Toxin wit 47.9 22 0.00048 27.8 2.9 34 160-195 104-137 (140)
424 KOG1586 Protein required for f 47.6 2E+02 0.0043 25.4 19.1 27 370-396 160-186 (288)
425 PF02184 HAT: HAT (Half-A-TPR) 47.5 49 0.0011 18.5 3.4 22 488-511 3-24 (32)
426 PF11817 Foie-gras_1: Foie gra 47.4 1.7E+02 0.0036 26.1 9.0 62 437-498 181-244 (247)
427 KOG2063 Vacuolar assembly/sort 47.4 4E+02 0.0088 28.9 28.0 39 373-411 600-638 (877)
428 KOG2297 Predicted translation 47.2 2.3E+02 0.005 26.0 17.0 69 306-384 267-341 (412)
429 PF14561 TPR_20: Tetratricopep 45.6 1.1E+02 0.0025 22.0 7.5 54 113-166 19-73 (90)
430 KOG2908 26S proteasome regulat 45.3 2.6E+02 0.0057 26.1 10.4 52 410-461 86-142 (380)
431 PRK13342 recombination factor 44.7 3.1E+02 0.0067 26.8 19.2 31 273-303 244-274 (413)
432 COG4976 Predicted methyltransf 44.3 80 0.0017 27.5 5.9 53 410-463 6-58 (287)
433 KOG0508 Ankyrin repeat protein 43.9 3.3E+02 0.0071 26.8 11.9 29 442-470 345-373 (615)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 43.6 1.6E+02 0.0034 23.0 10.4 43 134-176 81-124 (126)
435 KOG2034 Vacuolar sorting prote 43.6 4.5E+02 0.0097 28.3 25.0 75 80-168 359-433 (911)
436 PF14669 Asp_Glu_race_2: Putat 43.5 2E+02 0.0044 24.3 12.7 175 323-497 2-206 (233)
437 cd08819 CARD_MDA5_2 Caspase ac 43.3 1.2E+02 0.0027 21.7 7.2 16 411-426 48-63 (88)
438 PRK14956 DNA polymerase III su 42.9 3.6E+02 0.0077 27.0 11.3 101 381-508 183-284 (484)
439 COG5108 RPO41 Mitochondrial DN 42.5 2.1E+02 0.0045 29.5 9.2 91 334-427 33-131 (1117)
440 PF11848 DUF3368: Domain of un 42.4 82 0.0018 19.5 5.1 13 204-216 20-32 (48)
441 cd08315 Death_TRAILR_DR4_DR5 D 42.0 1.2E+02 0.0026 22.3 6.0 81 11-94 12-95 (96)
442 KOG4567 GTPase-activating prot 41.8 1.9E+02 0.0041 26.6 8.0 43 350-392 264-306 (370)
443 KOG4521 Nuclear pore complex, 41.5 5.5E+02 0.012 28.7 14.2 152 268-422 929-1125(1480)
444 PF12968 DUF3856: Domain of Un 41.4 1.6E+02 0.0036 22.7 7.3 70 62-143 54-127 (144)
445 PF07575 Nucleopor_Nup85: Nup8 41.2 4.2E+02 0.0091 27.3 19.2 62 328-391 404-465 (566)
446 PRK11639 zinc uptake transcrip 40.7 54 0.0012 27.2 4.5 51 476-526 29-79 (169)
447 PF04910 Tcf25: Transcriptiona 40.2 3.4E+02 0.0073 25.9 17.9 166 259-426 7-220 (360)
448 PF09868 DUF2095: Uncharacteri 40.2 1.3E+02 0.0029 22.7 5.7 45 477-522 66-110 (128)
449 TIGR02508 type_III_yscG type I 40.1 1.5E+02 0.0033 22.0 8.6 51 268-324 48-98 (115)
450 KOG0128 RNA-binding protein SA 39.8 5E+02 0.011 27.7 30.0 203 61-287 111-340 (881)
451 PF02847 MA3: MA3 domain; Int 39.4 1.5E+02 0.0033 22.2 6.6 17 303-319 11-27 (113)
452 KOG2300 Uncharacterized conser 39.2 4E+02 0.0086 26.4 36.3 410 31-472 51-521 (629)
453 PF09986 DUF2225: Uncharacteri 38.9 2.6E+02 0.0057 24.3 9.8 61 402-462 121-193 (214)
454 KOG1839 Uncharacterized protei 38.5 6.2E+02 0.013 28.6 12.6 159 303-461 941-1126(1236)
455 cd07153 Fur_like Ferric uptake 38.4 98 0.0021 23.5 5.5 42 124-165 8-49 (116)
456 PF10366 Vps39_1: Vacuolar sor 37.8 1.8E+02 0.0038 22.0 7.1 27 366-392 41-67 (108)
457 PRK14951 DNA polymerase III su 37.7 4.9E+02 0.011 27.1 11.5 93 414-509 184-287 (618)
458 PF00244 14-3-3: 14-3-3 protei 37.4 2.9E+02 0.0064 24.4 11.1 48 415-462 142-197 (236)
459 PF14853 Fis1_TPR_C: Fis1 C-te 37.3 1.1E+02 0.0024 19.5 5.3 32 121-154 6-37 (53)
460 KOG0376 Serine-threonine phosp 37.1 93 0.002 30.4 5.9 100 303-407 13-113 (476)
461 PF04762 IKI3: IKI3 family; I 36.7 6.3E+02 0.014 28.0 15.6 19 193-211 701-719 (928)
462 KOG0687 26S proteasome regulat 36.7 3.6E+02 0.0077 25.2 14.9 168 308-480 36-224 (393)
463 PF14561 TPR_20: Tetratricopep 36.5 1.6E+02 0.0036 21.2 8.4 31 432-462 20-50 (90)
464 PF02607 B12-binding_2: B12 bi 36.4 76 0.0016 22.0 4.2 39 483-521 12-50 (79)
465 PF11817 Foie-gras_1: Foie gra 36.4 1.8E+02 0.0039 26.0 7.5 53 300-352 184-241 (247)
466 KOG2659 LisH motif-containing 36.4 76 0.0017 27.6 4.7 118 395-517 22-148 (228)
467 PF10475 DUF2450: Protein of u 36.0 3.5E+02 0.0076 24.9 13.1 115 335-460 104-223 (291)
468 PRK14700 recombination factor 35.7 3.6E+02 0.0077 24.9 15.7 33 274-306 141-173 (300)
469 PRK13341 recombination factor 35.7 5.8E+02 0.012 27.3 16.4 33 237-269 271-303 (725)
470 COG0790 FOG: TPR repeat, SEL1 35.6 3.4E+02 0.0075 24.7 24.4 46 312-360 173-222 (292)
471 PF09454 Vps23_core: Vps23 cor 35.1 1.4E+02 0.003 20.0 5.1 48 470-518 6-53 (65)
472 KOG0403 Neoplastic transformat 34.7 4.5E+02 0.0097 25.7 18.3 72 403-484 513-586 (645)
473 PRK14956 DNA polymerase III su 34.6 4.8E+02 0.01 26.1 12.5 37 150-186 247-283 (484)
474 PF01475 FUR: Ferric uptake re 34.3 1E+02 0.0022 23.6 4.9 45 121-165 12-56 (120)
475 PRK08691 DNA polymerase III su 34.2 5.9E+02 0.013 27.0 12.2 94 46-148 183-277 (709)
476 PRK14958 DNA polymerase III su 34.1 5.1E+02 0.011 26.2 12.6 29 155-184 250-278 (509)
477 smart00386 HAT HAT (Half-A-TPR 34.1 76 0.0017 16.7 3.9 11 416-426 4-14 (33)
478 PF03745 DUF309: Domain of unk 33.8 1.4E+02 0.0031 19.7 5.8 32 376-407 11-42 (62)
479 PRK13800 putative oxidoreducta 31.8 7.4E+02 0.016 27.4 27.6 18 257-274 633-650 (897)
480 PF15297 CKAP2_C: Cytoskeleton 31.8 4.4E+02 0.0096 24.8 9.2 63 451-518 120-186 (353)
481 PRK08691 DNA polymerase III su 31.7 6.5E+02 0.014 26.7 13.2 98 381-506 181-279 (709)
482 COG4003 Uncharacterized protei 31.6 1.8E+02 0.004 20.4 5.3 38 477-515 36-73 (98)
483 PF10255 Paf67: RNA polymerase 31.5 2.9E+02 0.0063 26.8 8.2 99 328-426 74-191 (404)
484 PRK14958 DNA polymerase III su 31.4 5.7E+02 0.012 25.9 12.4 33 473-506 247-279 (509)
485 smart00101 14_3_3 14-3-3 homol 31.1 3.8E+02 0.0083 23.9 17.5 52 450-501 144-200 (244)
486 KOG4567 GTPase-activating prot 30.4 4.4E+02 0.0096 24.4 10.3 44 384-427 263-306 (370)
487 COG2812 DnaX DNA polymerase II 30.4 5.9E+02 0.013 25.8 12.1 101 42-151 179-280 (515)
488 PRK11639 zinc uptake transcrip 30.3 3E+02 0.0065 22.8 7.3 44 370-413 31-74 (169)
489 PRK09857 putative transposase; 30.2 3E+02 0.0065 25.3 8.0 97 122-220 178-274 (292)
490 PF07720 TPR_3: Tetratricopept 30.2 1.1E+02 0.0025 17.5 3.8 27 474-500 3-31 (36)
491 PF09477 Type_III_YscG: Bacter 30.2 2.4E+02 0.0053 21.3 9.2 78 414-501 21-98 (116)
492 PF06957 COPI_C: Coatomer (COP 30.2 5.3E+02 0.012 25.2 10.0 46 474-519 302-348 (422)
493 PRK09462 fur ferric uptake reg 29.5 2.2E+02 0.0048 22.9 6.3 61 463-523 8-68 (148)
494 PF09454 Vps23_core: Vps23 cor 29.4 1.4E+02 0.003 20.1 4.2 46 150-196 7-52 (65)
495 PF08461 HTH_12: Ribonuclease 29.3 1.6E+02 0.0034 19.8 4.5 47 478-524 3-49 (66)
496 KOG2422 Uncharacterized conser 29.3 6.3E+02 0.014 25.8 20.1 51 340-390 353-404 (665)
497 KOG0292 Vesicle coat complex C 28.7 1.4E+02 0.0031 31.7 5.9 129 67-249 624-752 (1202)
498 KOG0530 Protein farnesyltransf 28.5 4.5E+02 0.0097 23.8 14.1 138 365-508 44-183 (318)
499 PRK06645 DNA polymerase III su 28.4 6.4E+02 0.014 25.5 11.7 28 156-184 263-290 (507)
500 cd02679 MIT_spastin MIT: domai 28.3 1.5E+02 0.0032 20.9 4.3 46 448-500 22-67 (79)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-65 Score=526.96 Aligned_cols=463 Identities=19% Similarity=0.252 Sum_probs=412.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHH
Q 047648 41 ADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIID 120 (537)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
++.+.|++.|+.+.+..-.+++...++.++..|.+.|..++|..+++.|. .|+..+|+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------------------~pd~~Tyn 441 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------------------NPTLSTFN 441 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------------------CCCHHHHH
Confidence 45666777777776553345666666677777777777766666655432 26778999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE--NGILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
++++|.++|++|.+.|+.||..+|+.++.+|++ .|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k---~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ---SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999 8999999999999976 57899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----K-------------------GKLEDANGLL 495 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 495 (537)
.++.+|++.|++++|.+++++|.+ .|+.||..+|+.++..|.+ . +..++|..+|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k---~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKE---DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999974 7889999999999865432 1 2346799999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 496 NELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
++|++.|+.||..||..++..+++.+....+...+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999999999999999988877777666654443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-64 Score=517.00 Aligned_cols=455 Identities=18% Similarity=0.285 Sum_probs=431.3
Q ss_pred HhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCch
Q 047648 36 LFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRN 115 (537)
Q Consensus 36 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 115 (537)
.+...+..+.|+.+|+.+.. |+..+|+.++.+|++.|++++|..+++.|.+.|- .++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl------------------~pD 471 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL------------------KAD 471 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC------------------CCC
Confidence 45556678889999887743 8999999999999999999999999999998863 678
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh--CCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 196 LCKAGKLNKASDIMEDMKS--LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
|++.|++++|.++|++|.. .|+.||..+|+.++.+|++ .|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 9999999999999999986 6789999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
+|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 434 LVTYNILVGALCK----D-------------------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 434 ~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
..+|+.++..|.+ + +..+.|..+|++|.+ .|+.||..+|+.++.++...+..+.
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~---~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS---AGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhcccccHHH
Confidence 9999999876432 1 124679999999984 7899999999999988889999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 491 ANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
+..+++.|...+..|+..+|+.+++++++
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999988899999999999999854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-61 Score=503.94 Aligned_cols=477 Identities=18% Similarity=0.231 Sum_probs=350.3
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH-------------------HH
Q 047648 29 PNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLH-------------------MF 89 (537)
Q Consensus 29 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~-------------------~~ 89 (537)
++.++..+.+. +.++.|+.+|..+.+. |..|+..+|+.++++|+..+++..+.++.. .+
T Consensus 155 ~n~li~~~~~~-g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 155 WNVLVGGYAKA-GYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 33444333333 4566666666666543 566666667777766666666555544333 33
Q ss_pred HHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH
Q 047648 90 VKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED 169 (537)
Q Consensus 90 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (537)
.+.|+.+.|..+|+.+. .++..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 233 ~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 233 VKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred hcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 34455566666666665 356677778888888888888888888888777777787788888887777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD 249 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 249 (537)
+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++ .|++++|+++|++
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~---~g~~~~A~~lf~~ 379 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEK---NGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 77888777777777777777777777777777777777777775 3577777777777777 7777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 047648 250 MVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV 329 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 329 (537)
|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777653 566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
.+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++..|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 6777777777777777777777777764 466777777777777777777777777777777777776776777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
++.|++++|.++|+.+ .+|..+|+.+|.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|.+.|+++
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHHHHHhhcChHH
Confidence 7777777777777665 46777888888888888888888888888764 567788888888888888888888
Q ss_pred HHHHHHHHHH-HcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 490 DANGLLNELL-EKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 490 ~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
+|.++|++|. +.|+.|+..+|..++..|++.|++++|+.++.++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 8888888887 5688888888888888888888888887766554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.6e-61 Score=492.29 Aligned_cols=461 Identities=18% Similarity=0.262 Sum_probs=433.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccC
Q 047648 31 TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSD 110 (537)
Q Consensus 31 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 110 (537)
..+..+ ...+.++.|+.+|.++....++.++..+|+.++.+|++.++++.+.+++..+.+.|-
T Consensus 92 ~~i~~l-~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------------- 154 (697)
T PLN03081 92 SQIEKL-VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------------- 154 (697)
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------
Confidence 344444 345678999999999987766889999999999999999999999999999988863
Q ss_pred CCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 047648 111 SLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN 190 (537)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (537)
.++..+|+.++..|++.|++++|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 155 --~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 155 --EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred --CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 5778999999999999999999999999996 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 270 (537)
.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++ .|++++|.++|++|.. +|..+|+.++.+|+
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k---~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~ 301 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK---CGDIEDARCVFDGMPE----KTTVAWNSMLAGYA 301 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH---CCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 8999999999999964 59999999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-NG 429 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 429 (537)
+|++|.+ ||..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999864 689999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QT 508 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~ 508 (537)
+.|+..+|+.++++|++.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 9999999999999999999999999999876 4589999999999999999999999999999976 5675 57
Q ss_pred hHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 509 TYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
+|..+++.|++.|+.++|..+...+
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999998776544
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-60 Score=500.45 Aligned_cols=478 Identities=18% Similarity=0.244 Sum_probs=355.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH-------------------HH
Q 047648 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHM-------------------FV 90 (537)
Q Consensus 30 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~-------------------~~ 90 (537)
+..+..++.. +.++.|+.+|..+.+. +.+++..+|..++..|...+.++.+..++.. +.
T Consensus 55 n~~i~~l~~~-g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 55 NSQLRALCSH-GQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 3444445444 5788999999988764 6788888999999999888888877766554 34
Q ss_pred HCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHH-------------
Q 047648 91 KNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL------------- 157 (537)
Q Consensus 91 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------- 157 (537)
+.|+...+..+|+.+. .++..+|+.+|.+|.+.|++++|+++|++|...|+.||..+|+.+
T Consensus 133 ~~g~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 133 RFGELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred hCCChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 5566667777777776 467789999999999999999999999999888887776666544
Q ss_pred ----------------------HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 158 ----------------------LRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 158 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
+.+|++.|++++|..+|++|.. ||..+||.+|.+|++.|++++|.++|++|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4455555666666666666542 35666666666666667777777777777777
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChh
Q 047648 216 GVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVV 295 (537)
Q Consensus 216 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 295 (537)
|+.||..+|+.++.+|++ .|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..
T Consensus 283 g~~Pd~~ty~~ll~a~~~---~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~ 355 (857)
T PLN03077 283 SVDPDLMTITSVISACEL---LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAV 355 (857)
T ss_pred CCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCee
Confidence 777777777777777777 677777777777777777777777777777777777777777777777753 5777
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 78888888888888888888888888778888888888888888777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhC------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDR------------------------------GVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
+.|++++|.++|++|.+. ++.||..||+.++.+|++.|+++.+.+++..+
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 777777777777666432 23444444444444444444444444444444
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 426 VNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.+.|+.++..++++|+++|+++|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44455555555566667777777777777777665 5899999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 506 NQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
|..||..++.+|++.|+++++..++..+.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 99999999999999999999877765543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-58 Score=476.05 Aligned_cols=434 Identities=20% Similarity=0.293 Sum_probs=411.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKR 141 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 141 (537)
+...++.+|..+.+.|++++|..+++.|.+.+. ..++..+|+.++.++.+.++++.|.+++..
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-----------------~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~ 148 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCP-----------------FTLPASTYDALVEACIALKSIRCVKAVYWH 148 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445789999999999999999999998876642 146789999999999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV 221 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 221 (537)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999974 69999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI 301 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (537)
.+|+.++.+++. .|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++
T Consensus 225 ~t~~~ll~a~~~---~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li 297 (697)
T PLN03081 225 RTFVVMLRASAG---LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSML 297 (697)
T ss_pred hhHHHHHHHHhc---CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHH
Confidence 999999999999 899999999999999999999999999999999999999999999999964 5899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME 381 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 381 (537)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999964 68999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 462 KMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+ ..++.|+..+|+.++.+|.+.|++++|.+++++| ++.|+..+|+.++.+|...|+++.++....+
T Consensus 454 ~--~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 454 E--NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred H--hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5 4688999999999999999999999999998876 5889999999999999999999987665443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.3e-30 Score=275.66 Aligned_cols=472 Identities=12% Similarity=0.062 Sum_probs=379.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC------------------CCCCChHH
Q 047648 39 SDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN------------------GKFTSVST 100 (537)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~------------------g~~~~~~~ 100 (537)
..++++.|...+..+.+. .+........++..+.+.|++++|..++..+.+. |+.+.+..
T Consensus 409 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQL--DPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhh--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555555443 2222333444455555555555555544443321 23333333
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 101 IFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
.|+...... +.+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 487 ~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 487 AFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHhhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333221 4556677788899999999999999999998765 457788899999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHH
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV 260 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 260 (537)
+. .+...+..++..+...|++++|.++++.+.+.. +.+...|..+..++.. .|++++|...++++.+.. +.+..
T Consensus 563 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~ 636 (899)
T TIGR02917 563 NP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA---AGDLNKAVSSFKKLLALQ-PDSAL 636 (899)
T ss_pred Cc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCChH
Confidence 53 367788889999999999999999999998754 4467889999999998 899999999999998764 33677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 88889999999999999999999998763 3467889999999999999999999999998875 567778888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
..|++++|...|..+...++ +..++..++.++.+.|++++|.+.++.+.+..+. +...+..+...|...|++++|..
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999988754 4467778899999999999999999999987654 78899999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|+++.+.. +.+..+++.+...+...|+ .+|+..++++++.. +.+..++..+..++...|++++|.++++++++
T Consensus 792 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 792 HYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA----PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999875 6778899999999999999 88999999998643 34667888999999999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 501 KGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
.+.. +..++..+...+.+.|+.++|...+.++.
T Consensus 866 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 866 IAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7643 88999999999999999999988876654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-29 Score=266.68 Aligned_cols=401 Identities=15% Similarity=0.114 Sum_probs=260.7
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
.++.++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+... .+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 344556666666666666666666666665543 33444555566666666666666666666665432 2555666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
..+.+.|+.++|..+++++.+.+ +.+...+..+...+.. .|++++|..+++.+.... +.+...|..+...+.+.|
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG---KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH---CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666666666666665543 2244555566666666 666777777776666542 335566667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++|...|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777766543 2345566666667777777777777777766643 3445666677777777777777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
.+.+.++ .+...+..+...+...|++++|...++.+...++ +..++..+..++...|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 7766543 2555666677777777777777777777776543 33556666777777777777777777777654 556
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP-NQTTYQI 512 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 512 (537)
...+..+...|...|++++|.+.|+++++.. ++++.++..++..+...|+ .+|+..++++.+. .| +..++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~ 842 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDT 842 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHH
Confidence 6777777777777777777777777776532 4566777777777777777 6677777777763 33 3455666
Q ss_pred HHHHHHhcCCcCCccCCCCccC
Q 047648 513 VREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 513 l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
+...+...|++++|..++..++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788777776665443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.2e-21 Score=209.95 Aligned_cols=472 Identities=11% Similarity=0.033 Sum_probs=305.0
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC------------------CChH
Q 047648 38 NSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF------------------TSVS 99 (537)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~------------------~~~~ 99 (537)
...++++.|+..++.+++. .|.+...+..+..++...|++++|...++.+.+.... ..+.
T Consensus 158 ~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~ 235 (1157)
T PRK11447 158 KLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASV 235 (1157)
T ss_pred hCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhH
Confidence 3456788899999999887 5677888899999999999999999999887654221 1111
Q ss_pred HHHHHhhhccCCCC----------------chH-HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 047648 100 TIFHALSTCSDSLC----------------RNS-IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALV 162 (537)
Q Consensus 100 ~~~~~~~~~~~~~~----------------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (537)
..+.......+... .++ .........+...|++++|+..|++..+.. +.+..++..+..++.
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 11211111111000 000 111233567788999999999999999864 447788899999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC-HHHH------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 163 KEGKFEDVEYVYKEMKRRRIELN-LDSF------------NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILID 229 (537)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 229 (537)
+.|++++|...|++..+...... ...+ ......+.+.|++++|...|+++.+... .+...+..+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~ 393 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGD 393 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 99999999999999887643221 1111 1234567789999999999999998742 35566777888
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--------CChhhHHHHH
Q 047648 230 GYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--------AGVVTYNSLI 301 (537)
Q Consensus 230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~ 301 (537)
.+.. .|++++|++.|++..+... .+...+..+...+. .++.++|..+++.+...... .....+..+.
T Consensus 394 ~~~~---~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 394 VAMA---RKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHH---CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8888 8999999999999887532 23444444444442 23445554444433211000 0011223333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH-------------
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN------------- 368 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 368 (537)
..+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+..+. +...+.
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 44444555555555555544432 123334444444455555555555555544443221 222221
Q ss_pred -------------------------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 369 -------------------------------TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 369 -------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...+...|++++|..+++. .+++...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 234445566666666666551 23355667788888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
|+..|++..+.. +.+...+..++..|...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA----NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999875 5567888999999999999999999999886422 33566777788889999999999999999
Q ss_pred HHHcCCC--C---CHHhHHHHHHHHHhcCCcCCccCCC
Q 047648 498 LLEKGLI--P---NQTTYQIVREEMMEKGFIPDIEGHM 530 (537)
Q Consensus 498 ~~~~g~~--p---~~~~~~~l~~~~~~~g~~~~a~~~l 530 (537)
++..... | +...+..+...+...|+.++|...+
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8874321 1 2245566677788888887776553
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.4e-21 Score=209.62 Aligned_cols=478 Identities=11% Similarity=-0.001 Sum_probs=255.6
Q ss_pred HHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCc
Q 047648 35 QLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCR 114 (537)
Q Consensus 35 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 114 (537)
.+....+++++|...+..+... .|.++.++..++..+.+.|+.++|...++.+.+..........+....... .+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~---~~ 110 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS---TP 110 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc---CC
Confidence 3455678899999999998876 567788899999999999999999998888877643222111111111100 12
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL-SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
+....-.+.+.+...|++++|++.|+.+.+.+ +|+.. ............|+.++|.+.++++.+..+. +...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22223344455666666666666666666543 22221 1111111122346666666666666655322 445555566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC------------------C--------------CChhhHH----------------
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGV------------------S--------------PKVVTYN---------------- 225 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~~---------------- 225 (537)
..+...|+.++|++.++++.+... . |+.....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 666666666666666665533210 0 0000000
Q ss_pred -----HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHH-
Q 047648 226 -----ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA-GVVTYN- 298 (537)
Q Consensus 226 -----~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~- 298 (537)
.....+.. .|++++|+..|++..+... .+..++..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 269 ~~~~~~~G~~~~~---~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 269 AFRARAQGLAAVD---SGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred chHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 00112223 4666666666666655422 245556666666666666666666666665532111 111111
Q ss_pred -----------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 299 -----------SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 299 -----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 11234445666666666666665542 233444555556666666666666666665544222 11111
Q ss_pred H------------------------------------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 368 N------------------------------------------TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 368 ~------------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
. .+...+...|++++|++.+++.++..+. +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 1 1222333456666666666666655433 45555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-------------------------------------------------------
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGM------------------------------------------------------- 430 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------------------- 430 (537)
...|...|++++|...++++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 6666666666666666666554321
Q ss_pred ------------------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 431 ------------------RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 431 ------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|++++|+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 1222233444555556666666666666666432 335566666666666666666666
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 493 GLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 493 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+.++.+.+ ..|+ ..+...+..++.+.|++++|..++..
T Consensus 658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666655 2333 33444555566666666666554443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-22 Score=185.09 Aligned_cols=421 Identities=15% Similarity=0.088 Sum_probs=340.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh-----HHHHHHhhhc----------cCCCCchHHHHHHHHHHHHHcC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV-----STIFHALSTC----------SDSLCRNSIIIDMLMLAYVKNM 130 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~-----~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g 130 (537)
...+.+-+.+.|++.+|++...+.-...+.... ..++-...+. -...+.-..+|..+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 566788888889999998877665443211111 0111100000 0111334588999999999999
Q ss_pred CchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 047648 131 KPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIM 209 (537)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 209 (537)
++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ....+....-..|++++|...+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999999874 336789999999999999999999999999886 34433 3345566667789999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 210 EDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN-EVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 210 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
.+.++... --...|+.|...+-. .|+...|+..|++.... .|+ ...|..|...|...+.++.|+..|.+....
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~---~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNA---QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhh---cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 98887532 235678888888888 89999999999998875 344 568999999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. +.....+..+.-.|..+|..+.|+..+++.++.. +--+..|+.+..++-..|++.+|...+.+.....+. .....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 3 3357788888889999999999999999999863 223678999999999999999999999999887443 567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKD 447 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 447 (537)
.|...|...|.+++|..+|....+-.+. -...++.|...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHh
Confidence 9999999999999999999999986433 3567889999999999999999999999985 565 57899999999999
Q ss_pred CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
|+.+.|++.+.+++... +.=...++.|...|-..|+..+|+.-+++.++ ++||.
T Consensus 436 g~v~~A~q~y~rAI~~n----Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN----PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hhHHHHHHHHHHHHhcC----cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999999998643 22357889999999999999999999999998 77875
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=6.6e-22 Score=182.33 Aligned_cols=441 Identities=14% Similarity=0.128 Sum_probs=352.6
Q ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 66 TGRLLHSLVVAKKY-PKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 66 ~~~l~~~~~~~~~~-~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
-+.++.-+-+...- +.-.++....-+.|++.++.+.-.-.-..+ +.+....-.+-..+.+..+.+.....-....+
T Consensus 34 s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d---~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r 110 (966)
T KOG4626|consen 34 SSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED---PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR 110 (966)
T ss_pred chHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccC---CCcccceeeehhhhhcccchhhhhhhhhhhhh
Confidence 34455555544432 234555566666788888877655444332 33333333455667777777777666555555
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
.. +.-..+|..+...+-..|++++|+..|+.+.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+....
T Consensus 111 ~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 111 KN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred cc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh
Confidence 43 446788999999999999999999999999998644 7889999999999999999999999999886 5666655
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLING 303 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 303 (537)
.+-+..+.+. .|+.++|...+.+..+... --...|..|...+-..|+...|+..|++..+.. |+ ...|-.|...
T Consensus 187 ~s~lgnLlka--~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 187 RSDLGNLLKA--EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNV 261 (966)
T ss_pred hcchhHHHHh--hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHH
Confidence 5544444443 7999999998888877522 235778999999999999999999999998853 33 6789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
|...+.+++|+..+.+..... +.....+..+...|...|.++-|+..+++..+..+. -+..|+.|..++-..|+..+|
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHH
Confidence 999999999999999988753 334577888888899999999999999999887433 467899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+.+.+.+...+. .....+.|...|...|.++.|..+|....+.. +--....+.|...|-++|++++|+..|++++++
T Consensus 340 ~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 340 VDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9999999987544 67788999999999999999999999999863 233567899999999999999999999999864
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCccC
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 528 (537)
. +.-...|+.+...|-..|+.+.|++.+.+.+. +.|.. ...+.+...+..+|++++|+.
T Consensus 418 ~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 418 K----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred C----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 3 22367899999999999999999999999998 77875 678889999999999998854
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2e-19 Score=183.04 Aligned_cols=401 Identities=11% Similarity=-0.037 Sum_probs=284.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
+......+.+.|++++|...++..++. .|++..|..+..+|...|++++|++.++.+++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--------------------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l 189 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--------------------KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL 189 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 345566666777777777777666554 234567888888999999999999999998886
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--
Q 047648 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVT-- 223 (537)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 223 (537)
+ +.+..+|..+..++...|++++|..-|......+...+.. ...++..+... .+........+.. +++...
T Consensus 190 ~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~ 262 (615)
T TIGR00990 190 D-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETK-PENLPSVT 262 (615)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHH
Confidence 4 3466788888899999999999988887665442211211 11111111111 1111111111110 000000
Q ss_pred -------------------------------HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHh
Q 047648 224 -------------------------------YNILIDGYCKKGGIGKMYKADAVFKDMVENG-ILP-NEVTFNTLIDGFC 270 (537)
Q Consensus 224 -------------------------------~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~ 270 (537)
+..+...+......+.+++|.+.|+.....+ ..| ....+..+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 263 FVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 0111111011011467889999999988764 223 4567788888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..|++++|+..|++..... +.....|..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988763 2246678888889999999999999999998864 4567888899999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.|++..+..+. +...+..+..++.+.|++++|+..+++.++..+. ++..+..+...+...|++++|+..|++..+...
T Consensus 421 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999887544 6677888889999999999999999999886543 678899999999999999999999999988642
Q ss_pred CCChH------HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 431 RAGLV------TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 431 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+.. .++.....+...|++++|.++++++++.. +.+...+..++..+.+.|++++|++.|++..+.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID----PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 21111 12222233445699999999999988643 335567889999999999999999999999874
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=6e-20 Score=186.02 Aligned_cols=333 Identities=12% Similarity=0.095 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++.+..+. +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC
Confidence 46677778888888888888887764 334555666667777788888888888888876433 5667777788888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 280 (537)
++++|...+++..+.. +.+...+..+...+.. .|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~---~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVL---MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888887753 2245567777777777 78888888888877655322 23333333 34677788888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 047648 281 VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK----ARVLFDDIS 356 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 356 (537)
.++.+.+....++...+..+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 88887665433344444555677778888888888888887754 4456677778888888888775 788888887
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-H
Q 047648 357 EQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL-V 435 (537)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 435 (537)
+..+. +...+..+...+.+.|++++|...+++..+..+. +...+..+..++...|++++|...++++.+.+ |+. .
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 76443 6667778888888888888888888888876544 56667777888888888888888888887753 333 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
.+..+..++...|++++|++.|+++++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3444566778888888888888888765433
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.6e-21 Score=186.12 Aligned_cols=301 Identities=14% Similarity=0.125 Sum_probs=214.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN---EVTFNTLIDGFCK 271 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 271 (537)
.+...|++++|...|+++.+.+. .+..++..+...+.. .|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRR---RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH---cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665431 233455555555555 5666666666666655322111 2345666667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN----VVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 347 (537)
.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 33556677777777777777777777777766542221 1234566677778888888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888776432 45677778888999999999999999988765443356778888999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCC
Q 047648 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ---KGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~ 504 (537)
. .|+...+..++..+.+.|++++|..+++++++. .|+...++.++..+.. .|+.++++.++++|.+.++.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 6 366667788999999999999999999998752 5788888888877664 56899999999999988887
Q ss_pred CCHH
Q 047648 505 PNQT 508 (537)
Q Consensus 505 p~~~ 508 (537)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 7766
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=5.7e-20 Score=186.96 Aligned_cols=402 Identities=15% Similarity=0.032 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
.+......+.+.|++++|++.|++++.. .|+...|..+..++.+.|++++|++.++..++.... +...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4556788999999999999999999885 567888999999999999999999999999987533 6778999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-------------HHH---C--------
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-------------MVE---N-------- 253 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-------------~~~---~-------- 253 (537)
..|++++|+..|......+...+. ....++..+.. .....++...++. ... .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999998877654321121 11111111111 0001111111110 000 0
Q ss_pred ---CCCCCH-HHHHHHHHH---HhccCCHHHHHHHHHHHHhCC-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 254 ---GILPNE-VTFNTLIDG---FCKDENISAAMKVFEEMGSHG-I-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 254 ---~~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
...+.. ..+..+... ....+++++|.+.|+.....+ . +.....|..+...+...|++++|+..+++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000000 001111111 122468999999999998764 2 2345678888888999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 325 LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
+.....|..+...+...|++++|...|+++.+..+. +...|..+...+...|++++|...|++.++..+. +...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHH
Confidence 334668888999999999999999999999887544 6788999999999999999999999999987654 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHH-HHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIV-TYNVLIKG 481 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~-~~~~l~~~ 481 (537)
+..++.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++++++.+.... .+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999999864 556789999999999999999999999999886543211 1111 12222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 482 FCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+...|++++|..++++.++. .|+. ..+..+...+.+.|++++|..++..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44479999999999999884 4654 5688899999999999999776544
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=6.4e-19 Score=182.51 Aligned_cols=472 Identities=11% Similarity=0.022 Sum_probs=289.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC--------------CCCC
Q 047648 31 TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN--------------GKFT 96 (537)
Q Consensus 31 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~--------------g~~~ 96 (537)
.....+....++++.|+..|+.+++. .|.+..++..+..++...|++++|...++..++. +..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~ 125 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEV 125 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccCh
Confidence 33345556668899999999999987 6677889999999999999999999887766554 4555
Q ss_pred ChHHHHHHhhhccCCCCchHHHHHHHHHH--------HHHcCCchHHHHHHHHHhhCCCCCChhhHHHH-HHHHHhCCCh
Q 047648 97 SVSTIFHALSTCSDSLCRNSIIIDMLMLA--------YVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL-LRALVKEGKF 167 (537)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 167 (537)
.+..+++.+.... |.+..++..+... |.+.++..++++ .....+.|+..+.... .+.|.+.|++
T Consensus 126 kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 126 KSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hHHHHHHHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 6666677766654 3344444444443 444433333333 2211122233333333 5666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 047648 168 EDVEYVYKEMKRRRIELNLDSFNFVLNGLCK-AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAV 246 (537)
Q Consensus 168 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~ 246 (537)
++|.+.+.++.+.++. +......+..+|.. .++ +++..++.. .++-+...+..+...|.+ .|+.++|.++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~---~G~~~~A~~~ 269 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAY---RGEKARLQHY 269 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHH---CCCHHHHHHH
Confidence 6666666666665422 33333344444444 233 444444322 111244444444444444 4444444444
Q ss_pred HHHHHHCCCC-CCHHHH---------------------------------------------------------------
Q 047648 247 FKDMVENGIL-PNEVTF--------------------------------------------------------------- 262 (537)
Q Consensus 247 ~~~~~~~~~~-p~~~~~--------------------------------------------------------------- 262 (537)
++++...... |...++
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 4443221100 111111
Q ss_pred ------------------------------HHHHHHHhccCCHHHHHHHHHHHHhC-C-C--------------------
Q 047648 263 ------------------------------NTLIDGFCKDENISAAMKVFEEMGSH-G-I-------------------- 290 (537)
Q Consensus 263 ------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~-------------------- 290 (537)
..+.-...+.|+.++|.++|+..... + .
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 11111122344455555554444221 0 0
Q ss_pred ------------------------------------------CC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 047648 291 ------------------------------------------AA--GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK 326 (537)
Q Consensus 291 ------------------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (537)
++ +...|..+..++.. +++++|+..+.+.... .
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~ 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--Q 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--C
Confidence 11 23334444444444 5666677766666654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 327 PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 327 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
|+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++.++..+. +...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 55444344445556788888888888887554 334444566677788888888888888888876532 333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
......|++++|...+++..+.. |+...+..+..++.+.|++++|+..++++++.. +.+...+..+..++...|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence 44556699999999999988864 568888889999999999999999999998644 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 487 KLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
++++|+..+++.++ ..|+ ...+..+..++...|++++|+.++...+
T Consensus 658 ~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 658 DIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999988 4464 5678888889999999988877665443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-20 Score=182.64 Aligned_cols=304 Identities=14% Similarity=0.085 Sum_probs=227.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN---LDSFNFVLNGLCK 198 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 198 (537)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999874 34667888888899999999999999998887532221 2467788888999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCC
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN----EVTFNTLIDGFCKDEN 274 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 274 (537)
.|++++|..+|+++.+.. +++..++..++..+.+ .|++++|.+.++.+.+.+..+. ...+..+...+.+.|+
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQ---EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHH---hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999988753 3466788888888888 8899999999998887643322 1234566677788888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDD 354 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 354 (537)
+++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 2345567777788888888888888888887653222245677778888888888888888888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCC
Q 047648 355 ISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR---EGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 431 (537)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 77753 44455577788888888888888888887765 4677777777766553 45778888888888876665
Q ss_pred CChH
Q 047648 432 AGLV 435 (537)
Q Consensus 432 ~~~~ 435 (537)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 5554
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.7e-19 Score=185.21 Aligned_cols=422 Identities=11% Similarity=0.048 Sum_probs=304.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
.+-+.....-.+.+....|+.++|..++..+... .+.+...+..+...+...|++++|+++
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-------------------~~~~a~~~~~lA~~~~~~g~~~~A~~~ 71 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-------------------MQLPARGYAAVAVAYRNLKQWQNSLTL 71 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444555566677777888888888777776642 144556677888888889999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
|++.+... +.+...+..++..+...|++++|...+++..+... .+.. +..+..++...|+.++|+..++++.+..+.
T Consensus 72 ~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 72 WQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99888763 44566777888888888999999999988887743 3556 778888888889999999999988886422
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE------VTFNTLIDGFC-----KDENI---SAAMKVFEE 284 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~ 284 (537)
+...+..+...+.. .+..++|+..++.... .|+. .....++.... ..+++ ++|++.++.
T Consensus 149 -~~~~~~~la~~l~~---~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 149 -TQQYPTEYVQALRN---NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred -CHHHHHHHHHHHHH---CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 44455556666666 6888888887775543 2221 11122222222 22334 778888888
Q ss_pred HHhC-CCCCChh-hHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 285 MGSH-GIAAGVV-TYN----SLINGLCVDGKLDEAVALRDEMMASGLK-PNVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 285 ~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 8754 1222221 111 1133456779999999999999887532 322 223357788999999999999999876
Q ss_pred cCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHH
Q 047648 358 QGLSP---SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-----------LPD---VSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 358 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
..... .......+..++...|++++|...++.+.+..+ .|+ ...+..+...+...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53221 134456677788899999999999999887532 123 2345677788899999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+++++.... |.+...+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++++
T Consensus 381 ~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~----Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 381 RARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE----PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998874 6678899999999999999999999999998643 34567778888899999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHH
Q 047648 501 KGLIPNQTTYQIVREEM 517 (537)
Q Consensus 501 ~g~~p~~~~~~~l~~~~ 517 (537)
..|+......+-+.+
T Consensus 456 --~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 456 --REPQDPGVQRLARAR 470 (765)
T ss_pred --hCCCCHHHHHHHHHH
Confidence 568877666666555
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.9e-19 Score=181.06 Aligned_cols=360 Identities=10% Similarity=0.009 Sum_probs=285.6
Q ss_pred HHHcCCchHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 126 YVKNMKPHLGFEAFKRAGDYG--LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+.++.+++...-+|....+.. -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 345556655555554443321 0112334456677888999999999999999887544 5666677777888899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047648 204 KASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFE 283 (537)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 283 (537)
+|...++++.+..+ .+...+..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|...++
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~---~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLK---SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999998742 356677888888888 899999999999998763 3356788889999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 284 EMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (537)
.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...+++..+..+. +
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 88765332 33334333 347899999999999999887643344455566678889999999999999999987544 6
Q ss_pred HhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMED----AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
...+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7788889999999999986 89999999987654 78899999999999999999999999999875 455678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI-VTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+..++.+.|++++|++.|+++.+. .|+. ..+..+..++...|++++|...|++..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999863 2433 34445677899999999999999999984
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1.2e-17 Score=173.00 Aligned_cols=406 Identities=8% Similarity=-0.044 Sum_probs=305.3
Q ss_pred CChHHHHH--HHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHH
Q 047648 27 TDPNTVIL--QLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHA 104 (537)
Q Consensus 27 ~~~~~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~ 104 (537)
+++..+.. .+..-.++.+.|+..+...... .+.+..++..+...+...|++++|..+++..++.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------ 78 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------ 78 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 34444333 2334456788899888888753 4567777999999999999999999999998876
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 047648 105 LSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIEL 184 (537)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (537)
.|.++..+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+..+.
T Consensus 79 -------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 79 -------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 15566777789999999999999999999999873 44666 888999999999999999999999998544
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHhcC--CCCCCH---HHHHHHHHHHHHC
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV------VTYNILIDGYCKK--GGIGKM---YKADAVFKDMVEN 253 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~--~~~~~~---~~a~~~~~~~~~~ 253 (537)
+...+..+...+...|..+.|++.++.... .|+. .....++...... ...+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666777788888899999999999987664 2221 1122222222210 002234 6788888888854
Q ss_pred -CCCCCHH-HH----HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 047648 254 -GILPNEV-TF----NTLIDGFCKDENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK 326 (537)
Q Consensus 254 -~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (537)
...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1223221 11 11134456779999999999999887532 221 2223567899999999999999998865311
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 327 P---NVVTSNALINGFCKKKLVEKARVLFDDISEQGL-----------SPS---VITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 327 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
. .......+..++...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124456667788999999999999999987532 122 23455677888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 390 MLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 390 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+....+. +...+..+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++
T Consensus 385 al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 385 LAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9987655 78899999999999999999999999999875 45567778888899999999999999999986
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=9.8e-17 Score=163.07 Aligned_cols=446 Identities=11% Similarity=0.063 Sum_probs=322.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhc
Q 047648 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSL-LLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTC 108 (537)
Q Consensus 30 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~ 108 (537)
.....++....++...|+..|+.+++. .|.+. .++ .++..+...|+.++|...++.++...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~--------------- 98 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM--------------- 98 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC---------------
Confidence 344445666777888999999999876 33442 233 77888888899999988888776220
Q ss_pred cCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 047648 109 SDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDS 188 (537)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 188 (537)
+.+......++..|...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...
T Consensus 99 ----n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 99 ----NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 2333444455778889999999999999999875 335677778888899999999999999998877 445555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH------
Q 047648 189 FNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF------ 262 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~------ 262 (537)
+..++..+...++..+|++.++++.+.. +-+...+..+..++.+ .|-...|+++.++-... +.+....+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~---~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQR---NRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---cCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 5445555545667766999999999874 2256667778888888 78777887777653321 11111111
Q ss_pred HHHHHHH---h--ccCC---HHHHHHHHHHHHhC-CCCCC-hhhHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 047648 263 NTLIDGF---C--KDEN---ISAAMKVFEEMGSH-GIAAG-VVTYN----SLINGLCVDGKLDEAVALRDEMMASGLKPN 328 (537)
Q Consensus 263 ~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 328 (537)
..+++.- . ...+ .+.|+.-++.+... +..|. ...|. -.+-++...+++.++++.|+.+...+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 1111111 0 1122 34455556665542 11132 22221 234577889999999999999998886656
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGL-----SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-------- 395 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 395 (537)
..+-..+.++|...+++++|..++..+..... .++......|.-+|...+++++|..+++.+.+..+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 67889999999999999999999999876531 22344457788899999999999999999987422
Q ss_pred ---CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC
Q 047648 396 ---LPD--V-STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 396 ---~p~--~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
.|+ - ..+..++..+...|++.+|++.++++.... |-|......+...+...|.+.+|.+.++.+.... +
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~----P 481 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA----P 481 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----C
Confidence 122 2 234556777889999999999999998875 7789999999999999999999999998876432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
-+..+....+.++...|++++|..+.+.+.+ ..|+......
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 4677788888999999999999999999988 5576654444
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=1.9e-16 Score=164.30 Aligned_cols=447 Identities=12% Similarity=0.054 Sum_probs=308.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh--HHHHHHhhh---------cc-CC
Q 047648 44 VLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV--STIFHALST---------CS-DS 111 (537)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~--~~~~~~~~~---------~~-~~ 111 (537)
+.|+.... .......++...+......++...+++++|..++..+.+.+..... ..+-..... .. +.
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~ 242 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQG 242 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchh
Confidence 44444444 2222223344445555689999999999999999999988544322 111111111 01 12
Q ss_pred CCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCC-CChhhH------------------------------HHHHHH
Q 047648 112 LCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLK-SSVLSC------------------------------NQLLRA 160 (537)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~l~~~ 160 (537)
...++.++..++..|.+.|+.++|.++++++...... |...+| -.++..
T Consensus 243 lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 243 IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPV 322 (987)
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHH
Confidence 1246678889999999999999999999987654211 222211 112344
Q ss_pred HHhCCChhHHHHHHH-----------------------------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047648 161 LVKEGKFEDVEYVYK-----------------------------EMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 161 ~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 211 (537)
+.+.++++.+.++.. .|.+.. +-+......+.-...+.|+.++|.++|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 323 LLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455555554444422 111110 11444444455556678999999999998
Q ss_pred HHhC-C-CCCChhhHHHHHHHHhcCCCCCCHHHHHHH----------------------HHHHHHC-CC-CC--CHHHHH
Q 047648 212 MKSL-G-VSPKVVTYNILIDGYCKKGGIGKMYKADAV----------------------FKDMVEN-GI-LP--NEVTFN 263 (537)
Q Consensus 212 ~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~----------------------~~~~~~~-~~-~p--~~~~~~ 263 (537)
.... + ..++.....-++..|.+.+......++..+ ....... +. ++ +...|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 8763 1 123344555778888875432224444333 1111111 11 33 567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
.+..++.. +++++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 88877776 8999999988887765 355444444455557899999999999998664 455556677788889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMN 423 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (537)
+.++|...++...+.++. +...+..+.......|++++|...+++.++.. |+...+..+..++.+.|+.++|+..++
T Consensus 557 d~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887533 33344444445556799999999999999864 568889999999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 424 ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
+..+.. |.+...++.+..++...|++++|++.++++++.. +-+...+..+..++...|++++|...+++.++ +
T Consensus 634 ~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l 706 (987)
T PRK09782 634 AALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLVID--D 706 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 999985 5667888999999999999999999999998743 44778999999999999999999999999998 5
Q ss_pred CCCH
Q 047648 504 IPNQ 507 (537)
Q Consensus 504 ~p~~ 507 (537)
.|+.
T Consensus 707 ~P~~ 710 (987)
T PRK09782 707 IDNQ 710 (987)
T ss_pred CCCC
Confidence 5765
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.5e-16 Score=161.78 Aligned_cols=440 Identities=12% Similarity=0.073 Sum_probs=319.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH-HHHHHHHHHHHHcCCchHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS-IIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 137 (537)
.|..+.+.-.-+-...+.|+++.|...++..++.. |.++ .++ .++..+...|+.++|+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------------------P~~~~av~-dll~l~~~~G~~~~A~~ 89 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------------------PLQSGQVD-DWLQIAGWAGRDQEVID 89 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------------------ccchhhHH-HHHHHHHHcCCcHHHHH
Confidence 33344444445555668999999999998888762 2222 233 77888889999999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047648 138 AFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV 217 (537)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 217 (537)
.+++.... -+.+......+...+...|++++|.++|+++.+..+. +...+..++..+...++.++|++.++++...
T Consensus 90 ~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-- 165 (822)
T PRK14574 90 VYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER-- 165 (822)
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--
Confidence 99999831 1223333444466888899999999999999998654 6778888889999999999999999999886
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhh-
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVT- 296 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 296 (537)
.|+...+..+ ++...+ .++..+|++.++++.+.+ +-+...+..+...+.+.|-...|.++..+-... +.+....
T Consensus 166 dp~~~~~l~l--ayL~~~-~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~ 240 (822)
T PRK14574 166 DPTVQNYMTL--SYLNRA-TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ 240 (822)
T ss_pred CcchHHHHHH--HHHHHh-cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH
Confidence 4565556444 443322 566767999999999874 336777888899999999999998877654422 1111111
Q ss_pred -----HHHHHHHH---H--hCCC---HHHHHHHHHHHHHc-C-CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 297 -----YNSLINGL---C--VDGK---LDEAVALRDEMMAS-G-LKPNVVT----SNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 297 -----~~~l~~~~---~--~~~~---~~~A~~~~~~~~~~-~-~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
...+++.- . ..++ .+.|+.-++.+... + .++.... ..-.+-++...+++.++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 11111110 0 1223 34555555665542 1 1222222 22345667788999999999999998
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 047648 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-----LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM-- 430 (537)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 430 (537)
.+.+....+-.++.++|...+++++|..+++.+..... .++......|..++...+++++|..+++.+.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 87665666888999999999999999999999976531 23444467889999999999999999999998421
Q ss_pred ---------CCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 431 ---------RAG---LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 431 ---------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.|+ ...+..++..+...|++.+|.+.++++... .+-|......+...+...|++.+|.+.++..
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~----aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST----APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 122 133456678899999999999999999752 2558899999999999999999999999888
Q ss_pred HHcCCCCCH-HhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 499 LEKGLIPNQ-TTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 499 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
.. +.|+. .+......++...|.+++|+..+.++
T Consensus 477 ~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 477 ES--LAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred hh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77 45764 56667778888899999987776544
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-17 Score=161.22 Aligned_cols=451 Identities=12% Similarity=0.080 Sum_probs=261.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHH
Q 047648 45 LILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLML 124 (537)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (537)
.++..+..+.+. .+.++.+.+.|.+-+.-.++++.++.+...+..... . .+.-...|.-+.+
T Consensus 254 ~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~---------------~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 254 KGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-N---------------KSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-h---------------hHHHHHHHHHHHH
Confidence 355555555554 456667778888888888888888888777776521 0 0122366888999
Q ss_pred HHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 047648 125 AYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG---- 200 (537)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 200 (537)
+|-..|++++|...|....+......+..+..+...+.+.|+++.+...|+.+.+.. +-+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 999999999999999999886433224556778899999999999999999999874 336777778888887775
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDM----VENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
..+.|..++.+..+.. +.|...|-.+...+.. ++...++..|... ...+-.+.+...|.+...+...|++.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 5677777777777654 4477788888888876 4444446555443 34555677888999999999999999
Q ss_pred HHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 277 AAMKVFEEMGSH---GIAAGV------VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 277 ~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
+|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+.. +.-...|..++......+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 999999987654 112222 223334555666677888888887777642 1222333333333333445555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCC
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSR------------EGN 414 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~~~ 414 (537)
|...+......+- .++..+..+...+.+...+..|.+-|..+.+. ...+|..+.-+|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 5555555544321 13333443444444444444444433333322 111233333333333321 122
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
.++|+++|.+.++.. |-|...-|.+.-+++..|++..|+.+|.++.+.. ..+..+|..+..+|...|++-.|+++
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----SDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH----hhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 334444444444432 3334444444444444444444444444443311 11223444444444444444444444
Q ss_pred HHHHHHcCC-CCCHHhHHHHHHHHHhcCCcCCc
Q 047648 495 LNELLEKGL-IPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 495 ~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
|+...+.-. .-+......+.+++.+.|.+.++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 444443211 22333444444444444444443
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.3e-16 Score=152.59 Aligned_cols=448 Identities=15% Similarity=0.090 Sum_probs=337.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCC
Q 047648 33 ILQLFNSDADPVLILRYFCWSTKELRA-SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDS 111 (537)
Q Consensus 33 ~~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 111 (537)
++.-+-..++...+..+...++...-. +.-...|-.+...+-..|++++|...+-...+..+
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~----------------- 338 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN----------------- 338 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----------------
Confidence 334445567888888888888765321 23345688999999999999999998877766521
Q ss_pred CCch-HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCH
Q 047648 112 LCRN-SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG----KFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 112 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~ 186 (537)
.+ ...+--|.+.|...|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..+..+..+.. +.|.
T Consensus 339 --d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 339 --DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred --CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 11 2334468899999999999999999999873 556677777777777665 4677788887777764 4488
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC---CCC---
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMK----SLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN---GIL--- 256 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 256 (537)
..|-.+...+-.. +...++..|.... ..+..+.+...|.+...+.. .|++.+|...|+..... ...
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~---~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR---LGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH---hcChHHHHHHHHHHhhhhhhhcCccc
Confidence 8888888777554 4444476666543 44555778888999988888 89999999999988765 112
Q ss_pred ---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 257 ---PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 257 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
++..+-..+....-..++++.|.+.|..+.+. .|. +..|.-+.-..-..+...+|...+....... ..++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 23333445566666778999999999999886 344 3344444433345678889999999988754 5667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDAYCK------------EGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
+.+...+.+...+..|..-|..+.+. ...+|+.+..+|...|.+ .+..++|+++|.++++..+. |.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hh
Confidence 78888999999999998877776554 223577777777776653 24578899999999998766 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..-+.+.-+++..|++..|..+|.+..+.. .....+|..+.++|..+|++..|+++|+...+ +.....++.+...|.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHHHHH
Confidence 888999999999999999999999999875 34567899999999999999999999999986 333456888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+++.+.|++.+|.+.+.........-....|+.
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999999999988443322333443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3.6e-15 Score=132.43 Aligned_cols=348 Identities=15% Similarity=0.191 Sum_probs=251.9
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNIL 227 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (537)
+.+..+|..+|.++++--..+.|.++|.+......+.+..+||.+|.+-+-..+ .+++.+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 456778999999999999999999999998888888899999999877544332 7888999988899999999999
Q ss_pred HHHHhcCCCCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhC----CC----CCCh
Q 047648 228 IDGYCKKGGIGKMYK----ADAVFKDMVENGILPNEVTFNTLIDGFCKDENISA-AMKVFEEMGSH----GI----AAGV 294 (537)
Q Consensus 228 l~~~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~----~~----~~~~ 294 (537)
+++..+ .|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +.|.
T Consensus 280 L~c~ak---fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAK---FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHH---hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999998 776654 56788889999999999999999999988887644 44555555432 12 2234
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASG----LKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.-|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556777888888888888888776654321 2232 234566777788888888889999998877677788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH-------------HHHHHH-------HHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-NV-------------EGVRNI-------MNELV 426 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~-------------~~a~~~-------~~~~~ 426 (537)
..++++..-.|+++-.-++|.+++..|..-+.....-++..+++.. .. +-|..+ -.++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888988888999988888888887765444444444444444433 10 001111 12233
Q ss_pred HCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 427 NNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM-EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 504 (537)
+. .......+...-.+.+.|..++|.++|.-+.+- .+-...|......-++..-.+.+.+..|+.+++-|...+..
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 32 445567788888899999999999999988641 11112333444446666777889999999999999876543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.1e-16 Score=142.87 Aligned_cols=452 Identities=12% Similarity=0.083 Sum_probs=313.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDM 121 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (537)
-...|+..++.+.++.-++....+--.+.+++.+.+.|.+|.+++++.+.+-. ... + .....+.+.
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvp--sin---k---------~~rikil~n 281 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP--SIN---K---------DMRIKILNN 281 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc--ccc---h---------hhHHHHHhh
Confidence 34558999999999888888888888889999999999999999999886511 110 0 111245667
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC------------CCHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE------------LNLDSF 189 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~ 189 (537)
+...+.+.|+++.|+..|+.+.+. .|+..+-..|+-++..-|+.++..+.|.+|+..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 778899999999999999998875 567665444555555678999999999999765322 233333
Q ss_pred HHHHH-----HHHhcCChhHHHHHH---HHHHhCCCCCChhh---H----------H--------HHHHHHhcCCCCCCH
Q 047648 190 NFVLN-----GLCKAGKLNKASDIM---EDMKSLGVSPKVVT---Y----------N--------ILIDGYCKKGGIGKM 240 (537)
Q Consensus 190 ~~l~~-----~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~---~----------~--------~ll~~~~~~~~~~~~ 240 (537)
+-.+. -.-+.+ -..|.+.+ -+++.--+.|+-.. | . .-...+.+ .|++
T Consensus 360 ~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk---~~d~ 435 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK---NGDI 435 (840)
T ss_pred HHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---ccCH
Confidence 32222 121111 11222222 12221112222110 0 0 01123445 7889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGF-CK-DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
+.|+++++-+.+.+-..-+..-+.|-..+ .+ -.++..|.++-+...... .-+......-.+....+|++++|.+.++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999988887764333333333333222 22 346777777777665432 1133333333344556899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047648 319 EMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD 398 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 398 (537)
+.+...-.-....|+ +.-.+-..|++++|+..|-++... +..+..++..+...|-...+...|++++-+.... ++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 998754222222232 334466789999999999887554 2237778888999999999999999999888776 4558
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
+.++..|...|-+.|+-.+|.+.+-.--+. ++-+..+...|...|....-+++|+..|+++. -+.|+..-|..+
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-----liqp~~~kwqlm 665 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-----LIQPNQSKWQLM 665 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hcCccHHHHHHH
Confidence 999999999999999999999887665554 57788999999999999999999999999984 357999999999
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcC
Q 047648 479 IKGF-CQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIP 524 (537)
Q Consensus 479 ~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (537)
+..| .+.|+++.|.++++..-.+ ++-|...+..+++.+...|..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 8665 5689999999999998763 6668889999999998888643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.3e-13 Score=122.68 Aligned_cols=341 Identities=16% Similarity=0.194 Sum_probs=262.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.++.++..+|.++++--+.+.|.++|++......+.+..+||.+|.+-.-. .-.++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 5677899999999999999999999999999888899999999999865433 338899999999999999999999
Q ss_pred HHHHHhcCChhH----HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHH----CCCCC----CH
Q 047648 193 LNGLCKAGKLNK----ASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY-KADAVFKDMVE----NGILP----NE 259 (537)
Q Consensus 193 ~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~----~~~~p----~~ 259 (537)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++ .++.. -+..++.++.. +.+.| |.
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r---e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR---ESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc---cCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999998875 56788899999999999999999999999 44443 34455555443 22222 44
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHG----IAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
..|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|+-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788888999999999988876664421 3333 234667788889999999999999999988888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-Ch--------H-----HHHHHH-------HHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG-RM--------E-----DAFAMR-------NSML 391 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~ 391 (537)
..++++....+.++-..+++.++...|...+.....-++..+++.. ++ . -|..++ .++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999988876655555555555555544 11 0 111121 1222
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 392 DRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM----RAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 392 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
. ........+.+.-.+.+.|..++|.+++..+.+.+- .|......-+++.-...+++..|..+++-+..
T Consensus 517 ~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 517 A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 233556677788888999999999999999966532 23334445667777888889999999998864
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=2.1e-13 Score=132.49 Aligned_cols=327 Identities=13% Similarity=0.100 Sum_probs=158.2
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh
Q 047648 73 LVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL 152 (537)
Q Consensus 73 ~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 152 (537)
+...|++++|..++.+.++. .|.++..|..|...|-+.|+.++++..+-.+...+ |.|..
T Consensus 149 lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e 208 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYE 208 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChH
Confidence 33445666666666555555 14455566666666666666666665555554443 33445
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHH
Q 047648 153 SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN----ILI 228 (537)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~ll 228 (537)
.|..+.....+.|.++.|.-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|..-.. ..+
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 5666666666666666666666666655322 33333344455556666666666666665543211111111 122
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------------
Q 047648 229 DGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI----------------- 290 (537)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------- 290 (537)
..+.. .++-+.|++.+......+ -..+...++.++..+.+...++.+......+.....
T Consensus 288 ~~~~~---~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 288 HYFIT---HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHH---hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 33333 333355555555554421 112334455555555555556655555555443111
Q ss_pred ----------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 291 ----------AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 291 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
.++... -.++-++.+....+....+...+..... .-+...|.-+..++...|++..|..+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 111111 0111222233333333333333333332 223344555555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
...-+...|-.+..+|...|.++.|.+.++.++...+. +...-..|...+.+.|+.++|.+++..+
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 33334455555555555555555555555555554322 3334444444555555555555555553
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=2.1e-12 Score=125.72 Aligned_cols=438 Identities=14% Similarity=0.046 Sum_probs=254.2
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS 116 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (537)
+...++.+.|.+++.-++++ .|-....|..|..++-..|+.+++....-...-. .|.+.
T Consensus 149 lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------------------~p~d~ 207 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------------------NPKDY 207 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------------------CCCCh
Confidence 33447889999999999998 6778888999999999999999887665443332 14445
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH----HH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN----FV 192 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l 192 (537)
..|-.+.....+.|.+++|.-.|.++++.. |++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 667777777777777777777777777764 3344444445566677777777777777777664332322222 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC---------------
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL--------------- 256 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------- 256 (537)
+..+...++-+.|.+.++.....+ -..+...++.++..+.+ ...++.+...+..+......
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~---~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK---NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH---hHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 445555666677777777665521 12344556666666666 56666666666555541111
Q ss_pred ------------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 257 ------------PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHG--IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 257 ------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
++... ..++-++.+.+..+....+........ +.-+...|.-+..++.+.|++.+|+.+|..+..
T Consensus 364 ~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 11111 112223333333333333333333333 223445566666777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--------C
Q 047648 323 SGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--------G 394 (537)
Q Consensus 323 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 394 (537)
.....+...|-.+..+|...|..+.|...|..+....+. +...-..|...+.+.|++++|.+.+..+... +
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 544445566667777777777777777777776665322 4444555666666777777777776664421 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------------------
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN---------------------------------------------- 428 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------------- 428 (537)
..|+..........+...|+.++-..+-..|+..
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 601 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNV 601 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHH
Confidence 2333444444444455555554433333322210
Q ss_pred -----------------CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH--HHHHHHHHHHHhcCC
Q 047648 429 -----------------GMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI--VTYNVLIKGFCQKGK 487 (537)
Q Consensus 429 -----------------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 487 (537)
++..+ -..+.-++.++++.+.+++|..+...+.+.......+.. ..=...+.+.+..++
T Consensus 602 ~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 602 MEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 00000 011245566777778888888887777653222111111 122334455667788
Q ss_pred HHHHHHHHHHHHHc
Q 047648 488 LEDANGLLNELLEK 501 (537)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (537)
+..|...++.|...
T Consensus 682 ~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1e-11 Score=116.64 Aligned_cols=401 Identities=12% Similarity=0.004 Sum_probs=217.9
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHh----hCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAG----DYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE--LNL 186 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 186 (537)
|.+..+|-+-...=-++|+.+...++..+-. ..|+..+...|-.=...|-..|..-.+..+....+..|+. ...
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4455556555555555666655555554432 2355555555655555666666666666666665555543 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLI 266 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 266 (537)
.||+.-...|.+.+.++-|..+|...++.- +-+...|......=-. .|..++...+|++.... ++-....|....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~---hgt~Esl~Allqkav~~-~pkae~lwlM~a 591 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS---HGTRESLEALLQKAVEQ-CPKAEILWLMYA 591 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh---cCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence 355555666666666666666666655542 2233344433332222 55566666666666554 222334444445
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
..+-..|++..|..++....+.... +...|.+.+.....+.+++.|..+|.+.... .|+...|.--+...--.++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 5555566666666666666554322 4555666666666666666666666665553 345555544444444455566
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+|.+++++..+.- +.-.-.|-.+.+.+-+.++.+.|.+.|..-.+.- +-....|-.+...-.+.|.+-.|..++++..
T Consensus 669 eA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 6666665555541 1122344445555555555555555554443331 1123344444444445555555555555555
Q ss_pred HCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------chh------------cCCCCCHHHHHHHHH
Q 047648 427 NNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK--------------MEK------------EKKWPNIVTYNVLIK 480 (537)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~------------~~~~~~~~~~~~l~~ 480 (537)
-.+ |-+...|...|.+-.+.|..+.|..++.++++ +.+ ..+..|+.+.-.+..
T Consensus 747 lkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 747 LKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred hcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 443 34445555555555555555555555444433 000 012346666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCc
Q 047648 481 GFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 526 (537)
.+....+++.|.+.|.+.++. .||. .+|.-+..-..+.|.-++-
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHH
Confidence 788888888888888888874 3554 5677777777777754443
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.2e-11 Score=111.88 Aligned_cols=436 Identities=11% Similarity=0.062 Sum_probs=302.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
+++...|..+|+.++.. ...+..++...+..=.+++....|.-+++..+.. - |.-.-.|
T Consensus 86 q~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----------------l---PRVdqlW 144 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----------------L---PRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----------------c---chHHHHH
Confidence 34555566666666654 2344445555555555555555555544443322 1 3334556
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
...+-.=-..|+...|.++|++-.+ ..|+..+|++.+..-.+...++.|..+|+...-. .|++.+|-.....-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 6666666677999999999999887 5799999999999999999999999999998764 68999999888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPN--EVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 276 (537)
|.+..|..+|+...+. -.|...-..++.+++.- .....++.|.-+|+-.++. ++.+ ...|......--+-|+..
T Consensus 221 g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 221 GNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred CcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999988764 11333333344444320 0045677777788777765 3323 344444444444455544
Q ss_pred HHHHH--------HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HH
Q 047648 277 AAMKV--------FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV--VTSNALI--------NG 338 (537)
Q Consensus 277 ~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll--------~~ 338 (537)
...+. |+.+...+ +.|-.+|--.++.-...|+.+...++|++++.. ++|-. ..|...| -.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 43332 34444443 446777877888888889999999999999876 34422 1121111 11
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY----CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
-....+.+.+.++++...+. ++....||..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.++
T Consensus 376 Ele~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhh
Confidence 13467899999999998884 444556666554444 36788999999988876 457788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
++.+..++++.++-+ |-+..+|......-...|+.+.|+.+|+-+++ ..........|...|..=...|.++.|..+
T Consensus 453 fDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 999999999999976 66788999888888899999999999999885 111222455677777777889999999999
Q ss_pred HHHHHHcCCCCCHHhHHHH
Q 047648 495 LNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 495 ~~~~~~~g~~p~~~~~~~l 513 (537)
++++++.. +-...|.+.
T Consensus 530 YerlL~rt--~h~kvWisF 546 (677)
T KOG1915|consen 530 YERLLDRT--QHVKVWISF 546 (677)
T ss_pred HHHHHHhc--ccchHHHhH
Confidence 99998843 333344443
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3e-13 Score=129.56 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
++.+++.+..+...+.. +.|+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|.
T Consensus 308 ~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-----~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-----QRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444432 23333344444444444444444444444433 1244444444444444444444444
Q ss_pred HHHHHH
Q 047648 493 GLLNEL 498 (537)
Q Consensus 493 ~~~~~~ 498 (537)
+++++.
T Consensus 382 ~~~~~~ 387 (398)
T PRK10747 382 AMRRDG 387 (398)
T ss_pred HHHHHH
Confidence 444444
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=5.1e-11 Score=112.04 Aligned_cols=370 Identities=12% Similarity=0.018 Sum_probs=229.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSS--VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
.=...+-..|..--+..+....+..|+.-. ..+|+.-...|.+.+.++-|..+|...++.- +-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 333444444555555555555555444322 2456666666777777777777776666552 2255556555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
.|..+....+|++....- +.....|......+-. .|+...|..++.+..+.... +...|.+.+..-....+++.|
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~---agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK---AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh---cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 666666666666666542 2233444444444545 56666666666666655322 555666666666666667777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
..+|.+.... .|+...|..-+...--.++.++|++++++.++. ++.-...|..+...+-+.++++.|...|..-.+.
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 7666666553 345555555555555566666666666666654 2223445566666666666666666666554443
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN---------- 428 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 428 (537)
++..+..|..+...--+.|++-.|..++++..-+++. +...|...++.-.+.|+.+.|..++.+.++.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 2224445555555555666666666666666666555 5666666666666666666666665555442
Q ss_pred -------------------CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 429 -------------------GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 429 -------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.-|+.+...+...|....++++|++.|+++++.+ +.+-.+|..+...+.++|.-+
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d----~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD----PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC----CccchHHHHHHHHHHHhCCHH
Confidence 123455666777788888899999999999998643 346689999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 047648 490 DANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~ 507 (537)
+-.++++.+.. ..|..
T Consensus 869 d~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 869 DQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHHHhc--cCCCC
Confidence 99999999987 34554
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.5e-13 Score=123.22 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=246.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC-NQLLRALVKEGKFEDVEYVYKEMKRRRIEL----NLDSFNFVLN 194 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~ 194 (537)
..|...|..+....+|+..|+-+++...-|+.-.. -.+...+.+.+.+.+|++.|+..+..-+.. .....+.+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34666777777788888888877776655554432 223455667777777887777666542211 2234455555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC------------HHH
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVT-YNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN------------EVT 261 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~------------~~~ 261 (537)
.+.+.|.++.|+.-|+...+. .|+..+ +|..+-.+ - .|+.++..+.|.+|......|| ...
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f-~---i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF-A---IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe-e---cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 677778888888877776665 355544 44444333 3 4777777777777765322222 221
Q ss_pred HHHHH-----HHHhccC--CHHHHHHHHHHHHhCCCCCChhh-------------H--------HHHHHHHHhCCCHHHH
Q 047648 262 FNTLI-----DGFCKDE--NISAAMKVFEEMGSHGIAAGVVT-------------Y--------NSLINGLCVDGKLDEA 313 (537)
Q Consensus 262 ~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~~~~A 313 (537)
.+..+ .-.-+.+ +-++++-.--+++.--+.|+-.. + -.-...+.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 11111 1111111 11111111111111111111000 0 0012345667777777
Q ss_pred HHHHHHHHHcCCCC------------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 314 VALRDEMMASGLKP------------------------------------NVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 314 ~~~~~~~~~~~~~~------------------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
+++++-+.+..-+. +......-.+....+|++++|.+.+.+...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 77666655432111 111111111112236899999999999887
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 047648 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY 437 (537)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (537)
.+..-....|| +.-.+-..|+.++|++.|-++... +..+..++..+...|....+..+|++++.+.... ++.|+.++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 63332222333 344567889999999999887654 2237888889999999999999999999887765 67889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
..|.+.|-+.|+-.+|.+.+-+.. .-++.|..+...|...|....-++.++..|++..- +.|+..-|..++..|
T Consensus 596 skl~dlydqegdksqafq~~ydsy----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 999999999999999999876654 34566899999999999999999999999999876 889999999887655
Q ss_pred -HhcCCcCCcc
Q 047648 518 -MEKGFIPDIE 527 (537)
Q Consensus 518 -~~~g~~~~a~ 527 (537)
.+.|++..|.
T Consensus 670 ~rrsgnyqka~ 680 (840)
T KOG2003|consen 670 FRRSGNYQKAF 680 (840)
T ss_pred HHhcccHHHHH
Confidence 5678876663
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.1e-12 Score=115.34 Aligned_cols=359 Identities=11% Similarity=0.002 Sum_probs=247.6
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY-- 224 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 224 (537)
...|...+-.....+.+.|....|...|...... -+..|.+-+....-.-+.+. ...+... ...|...+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~----~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEI----LSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHH----HHHHHhc-CcccchHHHH
Confidence 3445555555556666777777788777776654 12223322222211222222 2222211 12121111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCChhhHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI--AAGVVTYNSLIN 302 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 302 (537)
-.+..++-. ..+.+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+... --|..+|+.++-
T Consensus 231 ~F~~~a~~e---l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 231 FFLKKAYQE---LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 123344444 557777887778888877775555555556666678899999999999988631 125667776653
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
. ++.+-.- ..+.+-.-.--+-.+.|...+.+.|+-.++.++|...|++..+.++. ....|+.+..-|...++...
T Consensus 308 v--~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 3 3332222 22222111111334567788888999999999999999999988655 66789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|.+-+++.++.++. |...|-.+.++|.-.+...=|+-+|++..... |.|...|.+|.++|.+.++.++|++.|..++.
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999998766 99999999999999999999999999999874 67889999999999999999999999999986
Q ss_pred chhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH--HhHHHHHHHHHhcCCcCCccC
Q 047648 463 MEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK----GLIPNQ--TTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 528 (537)
.+ ..+...+..|...|-+.++.++|...+++.++. |...+. ....-+..-+.+.+++++|.-
T Consensus 461 ~~----dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 461 LG----DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred cc----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 33 235688999999999999999999999888762 333222 222234566677777777654
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=7.2e-16 Score=141.14 Aligned_cols=253 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA 315 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 315 (537)
.|++++|++++++......+| |...|..+...+...++++.|...++++...+.. +...+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 455555555554433222112 2233333334444455556666666555544322 33344444444 45556666665
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 316 LRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG-LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
++....+. .+++..+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++.++..
T Consensus 99 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred cccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55554433 2344445555555556666666666665554321 23345555555666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
+. |......++..+...|+.+++..++....+.. +.++..+..+..+|...|++++|+..|++..+.. +.|+..
T Consensus 177 P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~ 250 (280)
T PF13429_consen 177 PD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLW 250 (280)
T ss_dssp TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHH
T ss_pred CC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc----cccccc
Confidence 33 45555556666666666666666665555542 3444555566666666666666666666655421 335555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
...+..++...|+.++|.++.++..
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5566666666666666666655543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-10 Score=105.72 Aligned_cols=386 Identities=10% Similarity=0.022 Sum_probs=269.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH--H
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF--N 190 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 190 (537)
..++..+......+.+.|..+.|.+.|...+.. .|-.=.+|..|...+ .+.+.+. .+.. +.+.|..-+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHHHH
Confidence 345566666667788889999999999998864 233334444444332 2222222 2221 112111111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL--PNEVTFNTLIDG 268 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~ 268 (537)
.+..++-.....+++.+-.+.....|++-+...-+....+... ..++++|+.+|+++.++..- -|..+|..++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~---~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN---QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 2344566666788888888888888765444443433344444 78999999999999987421 256777776543
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
- ..+- .+..+.+-...--.--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 309 ~--~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 2221 11222111111012234567778888889999999999999999865 34567888899999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
..-++...+.++. |...|-.|.++|.-.+.+.-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999987655 8889999999999999999999999999987655 8999999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch-hcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME-KEK-KWP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
| ..+...+..|.+.|-+.++.++|...|++.++.. ..| ..| ....-.-|..-+.+.+++++|.........- .+
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 6 4567889999999999999999999999887622 122 222 2233334566788899999999888777763 56
Q ss_pred CHHhHHHHHHHHHhc
Q 047648 506 NQTTYQIVREEMMEK 520 (537)
Q Consensus 506 ~~~~~~~l~~~~~~~ 520 (537)
.-.--..+++.+.+.
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666677777766554
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=1.2e-12 Score=125.36 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=220.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHhcCCCCCCH
Q 047648 164 EGKFEDVEYVYKEMKRRRIELNLDSF-NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN--ILIDGYCKKGGIGKM 240 (537)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~ 240 (537)
.|+++.|.+......+.. +++..+ ........+.|+++.|.+.+.++.+. .|+...+. .....+.. .|++
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~---~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA---RNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH---CCCH
Confidence 699999998888766542 123333 33345558899999999999999875 45554333 33556777 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhCCCHHHH
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV-------VTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A 313 (537)
++|...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999887533 6788889999999999999999999999987654322 1233344444455556667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
.++++.+.+. .+.++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++++..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 7777766543 3557888889999999999999999999998875 3344222 334445669999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+. |+..+..+.+.|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 665 7888999999999999999999999999986 5899999999999999999999999999887644
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=9.1e-16 Score=140.46 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYG-LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
.+...+.+.|++++|++++.+..... .+.+...|..+.......++++.|...|+++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34666777777777777775543332 2334445555555666667777777777777665433 45556666655 567
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
+++++|.++++...+. .++...+..++..+.. .++++++.++++.+.... .+++...|..+...+.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYR---LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -----------------------------H-HHH---TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHH---HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777665544 2445555666666666 667777777776665432 234555666666666677777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
++.+++..+.. +.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|...|++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 77777766642 2245556666666666676666666666665543 344455566666666666666666666666654
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.+. |+.....+..++.+.|+.++|.++.+++.
T Consensus 244 ~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp STT--HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccc
Confidence 332 56666666666666666666666665543
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.2e-12 Score=126.15 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTY-NCLIAGLSREGNVEGVRNIMNELVNNGMRAGL--VTYNI 439 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (537)
+...+..++..+...|++++|.+++++..+..+......+ ..........++.+.+.+.+++..+.. +.|+ ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 4444444555555555555555555555543222111000 111111122344455555555544432 2233 34445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
+...+.+.|++++|.+.|+.+.. ....|+...+..+...+.+.|+.++|.+++++.+
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a---~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAA---CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHH---hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555553111 0113455555555555555555555555555543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=8.9e-13 Score=127.06 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=133.5
Q ss_pred HcCCchHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666666655532 22 22233334455556666666666666554422222222333355555666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFN-TLIDGF---CKDENISAAMKVF 282 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~---~~~g~~~~a~~~~ 282 (537)
..++.+.+..+ -+...+..+...+.. .|++++|.+.+..+.+.++. +...+. ....++ ...+..++..+.+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~---~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIR---SGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 66666665532 134455555556655 56666666666666655433 222121 111111 1111111112222
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 283 EEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSP 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (537)
..+.+.. | +. .+.+...+..+...+...|+.++|.+++++..+..+..
T Consensus 249 ~~~~~~~--p-----------------------------~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 249 LNWWKNQ--P-----------------------------RH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHC--C-----------------------------HH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 2222211 0 00 01133444444444444444555544444444432221
Q ss_pred CHhHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 363 SVITY-NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 363 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
....+ ..........++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 11000 11111112234445555555555544322 33 4455556666666666666666663222223455555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+...+.+.|+.++|.+++++..
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.6e-12 Score=113.58 Aligned_cols=370 Identities=11% Similarity=0.003 Sum_probs=247.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
+-...+-|.++|++++|++.|.+.++. .|+ +..|.....+|...|+|+++.+.-...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345677889999999999999999985 566 777888888999999999999888887776322 2335555555666
Q ss_pred hcCChhHHHHH----------------------HHHH--------Hh-CC--CCCChhhHHHHHHHHhcCCC-----C--
Q 047648 198 KAGKLNKASDI----------------------MEDM--------KS-LG--VSPKVVTYNILIDGYCKKGG-----I-- 237 (537)
Q Consensus 198 ~~g~~~~a~~~----------------------~~~~--------~~-~~--~~~~~~~~~~ll~~~~~~~~-----~-- 237 (537)
..|++++|+.= +... .+ .+ +-|+.....+....+..... .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 66666655421 1111 11 11 22444444444443322100 0
Q ss_pred -C-----------------CHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 047648 238 -G-----------------KMYKADAVFKDMVEN-GILP--N---------EVTFNTLIDGFCKDENISAAMKVFEEMGS 287 (537)
Q Consensus 238 -~-----------------~~~~a~~~~~~~~~~-~~~p--~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 287 (537)
+ .+.+|...+.+-... ...+ + ..+.......+.-.|+...|...|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 111111111111000 0001 1 11112222234456888888888988887
Q ss_pred CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 288 HGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.... +...|-.+..+|.+..+.++-...|.+..+.+ +.++.+|..-.....-.+++++|..-|++.....+. +...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 6433 22337777778889999999999999988865 456677877777777888899999999998886544 56677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CChHHHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-------AGLVTYNIL 440 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l 440 (537)
..+.-+..+.++++++...|++..++- +..+..|+.....+...++++.|.+.|+..++.... +.+.+...+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 777777778889999999999998873 336788999999999999999999999988875311 112222222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..- -.+++..|..++.++++++ +.....|.+|...-.+.|+.++|+++|++...
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~D----pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIELD----PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHccC----chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 3388999999999998754 33567888999999999999999999998765
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=8.6e-14 Score=131.04 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
.+.+|-++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+......+. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 44555555555555555555555555555432 113445555555555555555555555555443211 2222333444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
.|.+.++++.|+-.|+++++.++. +.+....++..+.+.|+.++|+++++++...+ +.|+..--.-+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 555555555555555555555444 44445555555555555555555555555543 2233333333444455555555
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
|+..+++..+. ++.+..++..+...|.+.|+.+.|+.-|--+.+.
T Consensus 576 al~~LEeLk~~----vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 576 ALQELEELKEL----VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHh----CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555331 2334445555555555555555555555555553
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.7e-11 Score=111.30 Aligned_cols=428 Identities=11% Similarity=0.023 Sum_probs=292.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHH
Q 047648 58 RASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 137 (537)
+...++..--.+.+++.-.|++.+|..++..+.-. ..+.........++.+..++++|+.
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--------------------~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--------------------KRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677888888899999988888765321 2334555566777888888888888
Q ss_pred HHHH----HhhCC---------CCCCh-----------hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 138 AFKR----AGDYG---------LKSSV-----------LSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 138 ~~~~----~~~~~---------~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
++.+ +.... +.+|. ..+-.-...|....++++|...|.+.....+. ....+..++
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lv 182 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLV 182 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHH
Confidence 7772 21110 01111 11111123444455677788787776655322 222222222
Q ss_pred HHHHhc------------------CChhHHHHHHHHH----Hh------------CCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 194 NGLCKA------------------GKLNKASDIMEDM----KS------------LGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 194 ~~~~~~------------------g~~~~a~~~~~~~----~~------------~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
....-. .+.+....+|+-. .. .+..-+.........-+.. ..+
T Consensus 183 s~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~---~c~ 259 (611)
T KOG1173|consen 183 SAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY---GCR 259 (611)
T ss_pred HHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH---cCh
Confidence 221100 0111111222211 00 0111223333333444445 678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
+.+..++.....+.. ++....+..-|.++...|+..+-..+=.++.+. .|-.+.+|-++.--|...|+.++|.+.|.+
T Consensus 260 f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 260 FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 888889998888763 456667777777888888888777777777765 355788899998888888999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047648 320 MMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
...-+ +.-...|..+...|+-.|..++|+..+....+.-.. ....+--+.--|.+.++.+.|.+.|.+.....+. |+
T Consensus 338 at~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dp 414 (611)
T KOG1173|consen 338 ATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DP 414 (611)
T ss_pred HhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cc
Confidence 87643 223467889999999999999999999887664111 1122223455678899999999999999987544 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN----G--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
..++-+.-.....+.+.+|..+|+..+.. + .+.-..+++.|+.+|.+.+.+++|+..+++++.+. +.|..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~----~k~~~ 490 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS----PKDAS 490 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC----CCchh
Confidence 88888888888899999999999988732 1 11234678999999999999999999999998754 56889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEK 520 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (537)
++.++.-.|...|+++.|++.|.+.+. +.||..+...++..+.+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999987 889998888888766554
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.5e-13 Score=127.96 Aligned_cols=287 Identities=10% Similarity=0.058 Sum_probs=230.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCCCCCHHHH
Q 047648 166 KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV--SPKVVTYNILIDGYCKKGGIGKMYKA 243 (537)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~a 243 (537)
+..+|...|..+... +.-+..+...+.++|...+++++|.++|+.+.+... .-+...|.+.+-.+-+ .+ +
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v--~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EV--A 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hH--H
Confidence 467889999986655 333557778899999999999999999999987531 1366788887766533 22 2
Q ss_pred HHHH-HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 244 DAVF-KDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA-GVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 244 ~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
+..+ +.+... -+-.+.+|.++..+|.-.++.+.|++.|++..+.+ | ...+|+.+..-+....++|.|...|+..+
T Consensus 406 Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2222 233332 23367899999999999999999999999999863 4 78899999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVST 401 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 401 (537)
... +.+-..|-.+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+++++....++ |+..
T Consensus 483 ~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 632 223345556678899999999999999999987665 7777888899999999999999999999988766 6666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
-...+..+...++.++|...++++++. ++.+..++..++..|-+.|+.+.|+.-|--+.++++.|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 666777788899999999999999986 35567888999999999999999999999998876554
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=2.6e-11 Score=107.75 Aligned_cols=252 Identities=15% Similarity=0.100 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-.+++...+. -++.......++|.+.|++.....+
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHH
Confidence 344444444444433321122233333333334444444444444444333321 1233333444444444444444444
Q ss_pred HHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 317 RDEMMASGLKPN-------VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 317 ~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
+..+.+.+.-.+ ..+|..+++-....+..+.-...++..... .+.++..-..++.-+.+.|+.++|.++..+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444444433222 123344444444444444433344333222 222334444444555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC
Q 047648 390 MLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 390 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
..+++..|. -...-.+.+.++.+.-++..++-.+.. +.++..+..|...|.+.+.+.+|.+.|+.+++ ..
T Consensus 289 ~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-----~~ 358 (400)
T COG3071 289 ALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK-----LR 358 (400)
T ss_pred HHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-----cC
Confidence 555444333 111112334444444444444444331 23334555555555555555555555554442 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|+..+|+.+..++.+.|++.+|.++.++.+.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5555555555555555555555555555443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=1.2e-10 Score=103.56 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=235.7
Q ss_pred HHHHHHh--CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 047648 157 LLRALVK--EGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK 234 (537)
Q Consensus 157 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 234 (537)
+..++.+ .|+|..|.+...+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+....++...+-+.......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~- 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN- 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-
Confidence 3444433 69999999999998777644 3445666677788899999999999999987445666677777777777
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhC
Q 047648 235 GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV-------VTYNSLINGLCVD 307 (537)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 307 (537)
.|+...|..-+.++.+.+.. +.........+|.+.|++.....+...+.+.+.-.+. .+|..+++-....
T Consensus 166 --~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 166 --RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred --CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999887544 6778888899999999999999999999998866554 3567777766666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 308 GKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
+..+.-...++..... .+.++..-..++.-+..+|+.++|.++..+..+++..|+ ... .-.+.+-++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHH
Confidence 6666656666665544 356677888899999999999999999999998877665 222 22355778888878877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
+.-.+..+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|++.+|.++.++...+..
T Consensus 318 e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 318 EKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 777766444 6688999999999999999999999988875 69999999999999999999999999999875443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.1e-11 Score=105.06 Aligned_cols=287 Identities=14% Similarity=0.160 Sum_probs=174.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhcc
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE------VTFNTLIDGFCKD 272 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~ 272 (537)
.++.++|.++|-+|.+.. +-+..+..+|.+.|-+ .|..+.|+.+.+.+.++ ||. .....|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRs---RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRS---RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHh---cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 345566666666665532 1123333444455544 56666666666655543 221 2234455566677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV----VTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a 348 (537)
|-+|.|+++|..+.+.+. --......|+..|-...+|++|+++-+++.+.+-.+.. ..|..+...+....+++.|
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 777777777777766432 23445666777777777777777777777765533332 3455555555666777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
..++.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.++.--+.+...|..+|...|+.++....+.++.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7777777766433 444445566777777888888888888777765555667777777888888888888877777775
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ---KGKLEDANGLLNELLEK 501 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 501 (537)
. ++...-..+.+.-....-.+.|...+.+-+. ..|+...+..++..-.. .|++.+-+..++.|+..
T Consensus 279 ~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 N--TGADAELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 3334444444444444445555555544432 15777777777766543 34566666777777653
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.3e-10 Score=100.54 Aligned_cols=437 Identities=10% Similarity=0.037 Sum_probs=310.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 44 VLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFV-KNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
.+=+++-+.-+++....|...++...+..+ .+.++.+-=+-.|- ..|+...++++|++..+- .|+.-.|.+.
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sf 180 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW----EPDEQAWLSF 180 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHH
Confidence 334566666677766667666666555554 33344332222221 237789999999998874 6788999999
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-RI-ELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 200 (537)
|+.=.+....+.|..+|++.+-. -|++..|....+.-.+.|....+..+|+...+. |- ..+...|++....-.++.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 589999999999999999999999999987764 10 112234455555555678
Q ss_pred ChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 201 KLNKASDIMEDMKSLGVSPK-VVTYNILIDGYCKKGGIGKMYKADA-----VFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
.++.|.-+|.-.+..-++-. ...|..+...=-+.|+...+++++- -++.++..+ +-|-.+|-..++.-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCC
Confidence 88999999988877522211 2344444433333222334444432 233444443 3377788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCChh--hHHH----HHH----HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVV--TYNS----LIN----GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI----NGFC 340 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~--~~~~----l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll----~~~~ 340 (537)
.+...++|+..+.. ++|-.. .|.- .|+ .-....+.+.+.++++..++. ++....||.-+= ..-.
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999999876 444221 1111 111 223578899999999999883 444555655443 3345
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
++.++..|.+++..... .-|-..+|...|..-.+.++++.+..++++.++-++. +..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHH
Confidence 67899999999988765 4677888999999999999999999999999998776 88899999888889999999999
Q ss_pred HHHHHHHCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHH-----hcC--------
Q 047648 421 IMNELVNNG-MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFC-----QKG-------- 486 (537)
Q Consensus 421 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-------- 486 (537)
+|.-.+... .......|...|+.-...|.++.|+.++++.++. .+...+|-++...-. ..+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-----t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-----TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-----cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999988752 2233567788888888999999999999999863 234446666665443 233
Q ss_pred ---CHHHHHHHHHHHHH
Q 047648 487 ---KLEDANGLLNELLE 500 (537)
Q Consensus 487 ---~~~~A~~~~~~~~~ 500 (537)
....|..+|++...
T Consensus 568 ~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 568 TDENIKRARKIFERANT 584 (677)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 45678888888764
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.4e-11 Score=101.77 Aligned_cols=288 Identities=12% Similarity=0.050 Sum_probs=185.0
Q ss_pred CChHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhh
Q 047648 27 TDPNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106 (537)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~ 106 (537)
++...+-.+=+...++|+.|.+.|.-+.+. .+.+..+.-.|.+.+-+.|..++|..+...+.++-+.....+.+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l---- 108 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL---- 108 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH----
Confidence 444444443334456789999999999875 66778888899999999999999999999988875544333322
Q ss_pred hccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 047648 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 186 (537)
....|.+-|...|-++.|.++|..+.+.+ .--..+...|+..|-+..+|++|.++-+++.+.+..+..
T Consensus 109 -----------Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 109 -----------ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -----------HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 33457788889999999999999888753 234556778888888888888888888888776544332
Q ss_pred H----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047648 187 D----SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF 262 (537)
Q Consensus 187 ~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 262 (537)
. .|.-+...+....+++.|..++.+..+.+.+ .+..--.+.+.... .|+++.|.+.++...+.+..--+.+.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~---~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELA---KGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHh---ccchHHHHHHHHHHHHhChHHHHHHH
Confidence 2 3455555555667777777777777765321 33333444555555 67777777777777766443334555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
..|..+|.+.|+.++....+..+.+.. +....-..+...-....-.+.|...+.+-+.. +|+...+..++....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 666667777777777776666665542 22222333333333333344444444333332 466666666665544
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=1.7e-09 Score=101.84 Aligned_cols=442 Identities=14% Similarity=0.090 Sum_probs=256.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CChHHHHHHhhhccCCCCchHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF-TSVSTIFHALSTCSDSLCRNSIIID 120 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
-|..-+.+++.++++........+|...+.++=.. ++++.+.++-.+++.... +.+..++++.... +|..-+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~e 173 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEARE 173 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHH
Confidence 45666788888888877777777777776666443 455666666666665333 3666677766643 334466
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYG------LKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
-.+..++..+++++|-+.+...+... -+.+-..|..+-...++.-+. -....+++.+..+-...-...|++
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 67888889999999999888876541 133445666666666655432 334555666555422222346888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----------------CC---CCCHHHHHHHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK----------------GG---IGKMYKADAVFKDMVE 252 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~---~~~~~~a~~~~~~~~~ 252 (537)
|...|.+.|.++.|.+++++.... ..++.-|..+.+.|+.- +. ..+++-.+..|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999887764 23444455555554430 00 0112222333333333
Q ss_pred CCC-----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhCCCHHHHHH
Q 047648 253 NGI-----------LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG------VVTYNSLINGLCVDGKLDEAVA 315 (537)
Q Consensus 253 ~~~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~ 315 (537)
... +-+...|..-.. +..|+..+....|.++.+. +.|- ...|..+...|-..|+.+.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 210 112223322222 2346677777777776653 2221 2346667777778888888888
Q ss_pred HHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCC-------CHhHHHHHHHHHH
Q 047648 316 LRDEMMASGLKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQ----------GLSP-------SVITYNTLIDAYC 375 (537)
Q Consensus 316 ~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~ 375 (537)
+|++..+..++.- ..+|......-.+..+++.|+++.+..... |..| +...|...++..-
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 8888777544322 356666667777777778777777665321 0011 3344555566556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh---cCChH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL-VTYNILVGALCK---DGKSK 451 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~ 451 (537)
..|-++....+++++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 677777777778777776555 4443333333445556677777777766555323332 455555544433 22467
Q ss_pred HHHHHHHHHHHchhcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 047648 452 KAVSLLDEMFKMEKEKKWPNIVTYNVL--IKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|+.+|+++++ +++|...-+-.| ...=-+.|-...|+.++++...
T Consensus 568 raRdLFEqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 568 RARDLFEQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777764 344432211111 1112234666666666666543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-10 Score=106.27 Aligned_cols=220 Identities=11% Similarity=0.126 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|+...|..-|+..+.....++ ..|..+...|....+.++..+.|++....+.. ++.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 5777788888888887754433 33778888899999999999999999887533 778888888888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
|++.+... +.+...|..+..+..+.+.+++++..|++..++ ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99998853 345567777777778899999999999999887 4447889999999999999999999999998865222
Q ss_pred -----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 -----PD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 -----p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+ +.+--.++..- -.+++..|..++++..+.+ +-....|..|.+.-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 22222222222 3489999999999999875 34467899999999999999999999999865
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=5.2e-09 Score=98.90 Aligned_cols=423 Identities=15% Similarity=0.128 Sum_probs=282.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
.+++...+.+.+.+++. ++....+.....-.+...|+-++|...++.-+++ + ....+.|
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d------------------~~S~vCw 78 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-D------------------LKSHVCW 78 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhcc-C------------------cccchhH
Confidence 45677788888888885 5555556666666777889999999988877665 2 4556889
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
..+.-.+-...++++|++.|+.+...+ +.|...|.-+.-.-++.|+++.....-....+.... ....|..++.++.-.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Confidence 888888888999999999999999875 457777877777778889998888888877776322 556788888888899
Q ss_pred CChhHHHHHHHHHHhCC-CCCChhhHHHHHHH------HhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhc
Q 047648 200 GKLNKASDIMEDMKSLG-VSPKVVTYNILIDG------YCKKGGIGKMYKADAVFKDMVENGILPNEVTF-NTLIDGFCK 271 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 271 (537)
|+...|..++++..+.. -.|+...+...... ... .|..++|.+.+..-... +. |...+ ..-...+.+
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E---~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE---AGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHH
Confidence 99999999999988764 24666665443332 334 57778887777654432 22 33333 344567888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSL-INGLCV-DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK-KKLVEKA 348 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 348 (537)
.+++++|..+|..++.. .||...|... ..++.. .+..+....+|....+. .|....-..+--.... ..-.+..
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHH
Confidence 99999999999999987 4565555544 444443 33333333666665543 2221111111111111 1223344
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCCHH--HHHHHHHHHHhc
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML----DRG----------VLPDVS--TYNCLIAGLSRE 412 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~--~~~~l~~~~~~~ 412 (537)
..++....+.|+++ ++..+...|-.-...+-..++.-.+. ..| -+|... ++..+.+.+-..
T Consensus 308 dkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 45556666666653 33334433332222211111111111 111 134444 445677888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
|+++.|..+++..++. .|+ +..|..-...+...|++++|..+++++.+++ .+|...-.--+.-..++++.++|
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD----~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD----TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999886 455 4566677789999999999999999998766 45655544666777889999999
Q ss_pred HHHHHHHHHcCC
Q 047648 492 NGLLNELLEKGL 503 (537)
Q Consensus 492 ~~~~~~~~~~g~ 503 (537)
.++...+.+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999999988764
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2e-11 Score=105.20 Aligned_cols=230 Identities=12% Similarity=0.001 Sum_probs=191.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
+.+.++|.+.|.+.+|.+.|+..++. .|-+.+|..|-++|.+-.+...|+.+|.+..+. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46889999999999999999999885 567788888999999999999999999998876 333555567788889999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAM 279 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 279 (537)
++.++|.++++...+.. +.++.....+...|.- .++.+-|+..++++.+-|+. +...|+.+.-+|.-.++++-++
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY---~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFY---DNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HhHHHHHHHHHHHHhcC-Cccceeeeeeeecccc---CCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999998864 3355566566666666 78999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHhCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 280 KVFEEMGSHGIAAG--VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 280 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
..|++....-..|+ ...|..+.......|++..|.+.|+-....+ ..+...++.+.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998876433333 4567778888888999999999999888764 45667888888888899999999999988776
Q ss_pred c
Q 047648 358 Q 358 (537)
Q Consensus 358 ~ 358 (537)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 5
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=2.4e-08 Score=94.39 Aligned_cols=429 Identities=14% Similarity=0.191 Sum_probs=268.8
Q ss_pred CCCCHHHHHHHHHHHHh----cCCchHH-HHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCch
Q 047648 59 ASHSLLLTGRLLHSLVV----AKKYPKI-RSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPH 133 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~----~~~~~~a-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (537)
..++...|..+-+++-+ ....+.. ...++-+.++|....-+..|.+....-+. .....+|...+......|-++
T Consensus 77 ~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPe 155 (835)
T KOG2047|consen 77 LCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPE 155 (835)
T ss_pred cCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChH
Confidence 34445555544444322 1223333 23455566777777777777766554322 223367888888888888888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChh---H
Q 047648 134 LGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR------IELNLDSFNFVLNGLCKAGKLN---K 204 (537)
Q Consensus 134 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~ 204 (537)
-++.+|++.++. ++..-+-.+..+++.+++++|.+.+....... .+-+...|.-+-...+++-+.- .
T Consensus 156 ts~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 156 TSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 888888888763 33346667788888888888888887765431 2334445655555555543332 3
Q ss_pred HHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 047648 205 ASDIMEDMKSLGVSPK--VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE--------- 273 (537)
Q Consensus 205 a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 273 (537)
...+++.+... -+| ...|+.|..-|.+ .|.+++|.+++++.... .....-|+.+.++|+.-.
T Consensus 232 vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr---~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 232 VDAIIRGGIRR--FTDQLGFLWCSLADYYIR---SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred HHHHHHhhccc--CcHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555443 233 3467888888888 78888888888887764 224445555666555311
Q ss_pred -------------CHHHHHHHHHHHHhCC-----------CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Q 047648 274 -------------NISAAMKVFEEMGSHG-----------IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP-- 327 (537)
Q Consensus 274 -------------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 327 (537)
+++-.+.-|+.+...+ -+.++..|..-+. ...|+..+....+.++.+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1122222333332221 0112222322222 2346677777888887764 222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---
Q 047648 328 ----NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS---VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--- 397 (537)
Q Consensus 328 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--- 397 (537)
-...|..+...|-..|+++.|..+|++..+...+.- ..+|..-...-.+..+++.|++++++.....-.|
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235688889999999999999999999887633311 3455555666677888999999988876431111
Q ss_pred --------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 398 --------------DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 398 --------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+...|..++..-...|-++....+++++++..+. ++.+.......+-...-++++.++|++-+.+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 2345666777777789999999999999987643 3333333444455566689999999887653
Q ss_pred hhcCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 047648 464 EKEKKWPN-IVTYNVLIKGFCQ---KGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 464 ~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
-+ +|+ ...|+..+..+.+ ...++.|..+|++.++ |.+|..
T Consensus 541 Fk---~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 541 FK---WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CC---CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 32 454 4678888877665 3368999999999999 666764
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=2.1e-10 Score=115.04 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=184.6
Q ss_pred ChhhHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhC
Q 047648 220 KVVTYNILIDGYCK--KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC---------KDENISAAMKVFEEMGSH 288 (537)
Q Consensus 220 ~~~~~~~ll~~~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~ 288 (537)
+...|...+.+... ....+..++|...|++..+.... +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44455555555321 11245677889999988876322 4455555554443 234588999999998876
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.++. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 4 3367778888888888999999999999988864 445667888888899999999999999998887544 233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...++++.... +.+....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4444566788899999999888766433255567778888888999999999998876642 333445566666777777
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
++|...++.+.+.... .+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~--~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQR--IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhH--hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777777653222 2322223 44455556777777766 7777654
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.7e-09 Score=99.20 Aligned_cols=399 Identities=12% Similarity=0.018 Sum_probs=278.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH----HHhC---------CCCCCHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKE----MKRR---------RIELNLD 187 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~---------~~~~~~~ 187 (537)
-+++++.-.|+++.|..+...-.-. ..|..........+.+..+++.|..++.. +..- .+.+|..
T Consensus 54 ~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 54 WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 4778888889999998887766432 45777888888899999999999999882 2110 0111111
Q ss_pred H----HHH-------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH---HHHHHhcCC--------------CCCC
Q 047648 188 S----FNF-------VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI---LIDGYCKKG--------------GIGK 239 (537)
Q Consensus 188 ~----~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~--------------~~~~ 239 (537)
- -+. -...|....+.++|...+.+.... |...+.. ++....-.. -.+.
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 1 011 112344556677777777776554 3333322 222221100 0011
Q ss_pred HHHHHHHHHHHHH-----------------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 240 MYKADAVFKDMVE-----------------NGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302 (537)
Q Consensus 240 ~~~a~~~~~~~~~-----------------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (537)
..+-++.+-++.. .+..-+........+-+...+++.+..++.+...+.. ++....+..-|.
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia 286 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA 286 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH
Confidence 1111111111110 0111233333444556777899999999999988763 556667777778
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
++...|+..+-..+-.++++. .|-...+|-++...|...|+..+|++.|.+....+.. -...|-.+...|+-.|..+.
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHH
Confidence 999999999998888888886 3556789999999999999999999999998775433 34578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..+...-+.-+. ...-+-.+.--|.+.++++.|.++|.+..... |.|+.+++-+.-.....+.+.+|..+|+..+.
T Consensus 365 AmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99999888765222 22223344556788999999999999999874 77889999999999999999999999999874
Q ss_pred chhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 463 MEKEKKW---PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 463 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
.-+...+ .-..+++.|..+|.+.+++++|+..+++.+... +-+..++..+.-.+...|+++.|..+.-
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 2211111 123468889999999999999999999999853 2367889999999999999999876653
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.9e-08 Score=88.08 Aligned_cols=392 Identities=12% Similarity=0.054 Sum_probs=260.2
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-C-hhHH-------------HHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-K-FEDV-------------EYVYKEMK 178 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~a-------------~~~~~~~~ 178 (537)
.+...-...+.+|...++-+.|+..+...... ....-.|.++.-+.+.| + ++++ +..+.-..
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll 171 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALL 171 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHH
Confidence 34455556788888889988888877766542 12223333443333332 1 2221 11111111
Q ss_pred hCC---------------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCCCCH
Q 047648 179 RRR---------------IELNLDSFNFVLNGLC--KAGKLNKASDIMEDMKSL-GVSPKVVTYNILIDGYCKKGGIGKM 240 (537)
Q Consensus 179 ~~~---------------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~ 240 (537)
+.+ ++|+..+...-+.+++ -.++...+...+-.+... -++-|+.....+...+.. .|+.
T Consensus 172 ~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~---~Gdn 248 (564)
T KOG1174|consen 172 ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY---NGDY 248 (564)
T ss_pred HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh---hcCc
Confidence 111 2233333333333333 334444444444433332 234466677788888888 8888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 241 YKADAVFKDMVENGILPN-EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... .-+...|-.-........++..|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 89999998877642 32 2222333344557788888887777766542 12344455555556678889999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047648 320 MMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
.++.. +.+...+..-...+...++.++|.-.|+......+ -+...|..|+.+|...|++.+|..+.+...+. .+.+.
T Consensus 326 ~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA 402 (564)
T KOG1174|consen 326 CIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSA 402 (564)
T ss_pred HhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcch
Confidence 88754 33455666666778889999999999998876532 37889999999999999999999888877665 23366
Q ss_pred HHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 400 STYNCLI-AGLS-REGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 400 ~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.++..+. .+|. ...--++|.+++++..+. .|+ ....+.+...+...|..+.++.++++.+. ..||....+
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~ 475 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHN 475 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHH
Confidence 6666663 3332 334468899999988875 454 46778888999999999999999999975 368999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|...+...+.+++|++.|...+. +.|+...--.=++.+.+...-++|
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHhccCCCCc
Confidence 999999999999999999999998 667765554555556666655555
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=2.5e-10 Score=101.96 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665542 233455566666666667777777776666655332 44556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
+...|++++|...+++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777654221 234455666677777788888888877777653 3345667777777888888888
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877653 134556666677777777888888877777654
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.9e-11 Score=104.28 Aligned_cols=233 Identities=13% Similarity=0.021 Sum_probs=194.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKK 342 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 342 (537)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..++..|+.++.+-++. ++-|........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67888999999999999999988775 467788889999999999999999999998875 334444445667788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++.++|.++++...+.... ++.....+...|.-.++++.|+..+++++..|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999887543 6777777888888999999999999999999988 8999999999999999999999999
Q ss_pred HHHHHCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 423 NELVNNGMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 423 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
++....-..|+ ..+|-.+.....-.||+..|.+.|+-++..+ ..+...++.|...-.+.|+.++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98887643344 4678788888888999999999999887422 44678899999888999999999999998877
Q ss_pred cCCCCC
Q 047648 501 KGLIPN 506 (537)
Q Consensus 501 ~g~~p~ 506 (537)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 4455
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=5.9e-09 Score=101.06 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=206.9
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA--- 199 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 199 (537)
...+...|++++|++.++..... +.............+.+.|+.++|..+|..++++++. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 45568889999999999886654 4445666778888999999999999999999998643 555555555555222
Q ss_pred --CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 200 --GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKM-YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 200 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
.+.+...++++++.+.- |.......+.-.+.. -..+ ..+...+..+...|++ .+|..+-..|......+
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC---HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 35677888888887753 444444444333333 1223 2455677777788865 45667777777666666
Q ss_pred HHHHHHHHHHhC----C----------CCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 277 AAMKVFEEMGSH----G----------IAAGVV--TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 277 ~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
-..+++...... + -+|+.. ++..+...|...|++++|++++++.++.. +..+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 666666665432 1 123332 34556677888999999999999998863 233678888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhc
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV--------STYNCLIAGLSRE 412 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~ 412 (537)
..|++.+|...++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|.. ........+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887655 7777777888889999999999999988776543322 1224456778888
Q ss_pred CCHHHHHHHHHHHHH
Q 047648 413 GNVEGVRNIMNELVN 427 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~ 427 (537)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998888887776654
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=5.4e-10 Score=99.72 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566677777888888888888888876653 3346667777778888888888888888877754 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.+...|++++|...+++..+... ......+..+..++...|++++|...+++..+..+. +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 88888888888888888776422 123445666777888888888898888888876443 5667778888888889999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999888888876 34556677777788888888888888877764
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.4e-09 Score=92.76 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=104.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHH
Q 047648 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING-----FCKKKLVEKARVLFDDISEQGLSPSV-ITYNTLID 372 (537)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 372 (537)
.++-.|.++++..+|..+.+++.-. .|.......+..+ ........-|...|+-.-+.+..-|. .--..+..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 3444566777777777766654311 1222222222111 11122345555555555444333222 22334455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
++.-..++++.+-.+..+..--...|... ..+.++++..|++.+|+++|-++....++.+..-...|..+|.++++++.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 55555667777766666665433323333 34566777777777777777666554433333333455667777777777
Q ss_pred HHHHHHHHHHchhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVT-YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
|++++-++- .+.+..+ ...+...|.+.+.+--|.+.|+.+.. +.|+++.|
T Consensus 447 AW~~~lk~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTN------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 777665542 1112222 23334566677777777777777666 34554444
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=8e-10 Score=110.86 Aligned_cols=269 Identities=15% Similarity=0.084 Sum_probs=185.4
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 047648 148 KSSVLSCNQLLRALVK-----EGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK---------AGKLNKASDIMEDMK 213 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 213 (537)
+.+...|...+++... .+.+++|...|++..+..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666665422 13467899999998887433 45566666655442 245789999999998
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 047648 214 SLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG 293 (537)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 293 (537)
+... -+...+..+...+.. .|++++|...+++..+.+. .+...+..+...+...|++++|...+++..+.... +
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~---~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTI---HSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 8753 256677777777777 7999999999999988743 25677888888999999999999999999886432 2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..++..+...|++++|+..++++.....+.+...+..+..++...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 23334445557778999999999999876542234556777888888999999999999887665222 44455666667
Q ss_pred HHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 374 YCKEGRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
|...| +.|...++.+.+. ...+....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77777 4777777776653 112222222 33445556776666665 7777653
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=3.4e-08 Score=95.84 Aligned_cols=296 Identities=16% Similarity=0.116 Sum_probs=214.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cCC
Q 047648 157 LLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYC-KKG 235 (537)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ 235 (537)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|...+..+. ...
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 345678899999999999886554 44356667888999999999999999999999985 56666555444443 210
Q ss_pred --CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHH
Q 047648 236 --GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS-AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDE 312 (537)
Q Consensus 236 --~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (537)
..++.+....+++++... -|.......+.-.+.....+. .+..++..+...|+| .+|+.+-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 023567788899988765 244444444433333333443 344566667777765 356666666666666666
Q ss_pred HHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 313 AVALRDEMMAS----G----------LKPNV--VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 313 A~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
..+++...... + -+|.. .++..+...|...|++++|+.++++..++.+. .+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 66666665432 1 12333 34566678888999999999999999987433 47788888999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------HH--HHHHHHHHhcC
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLV------TY--NILVGALCKDG 448 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g 448 (537)
.|++.+|.+.++.....+.. |...-+-....+.+.|++++|.+++....+.+..|... +| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998766 88888888899999999999999999988776433221 11 45567899999
Q ss_pred ChHHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMFK 462 (537)
Q Consensus 449 ~~~~A~~~~~~~~~ 462 (537)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998887765
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.4e-07 Score=91.24 Aligned_cols=409 Identities=13% Similarity=0.074 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
+..+..+|..+.-++.+.|+++.+.+.++++..- . ......|..+...|...|....|+.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~------------------~~~~e~w~~~als~saag~~s~Av~l 379 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-S------------------FGEHERWYQLALSYSAAGSDSKAVNL 379 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-h------------------hhhHHHHHHHHHHHHHhccchHHHHH
Confidence 4445555666666666666666655555554432 0 12235677777777788888888887
Q ss_pred HHHHhhCCCCCC-hhhHHHHHHHHHh-CCChhHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CC
Q 047648 139 FKRAGDYGLKSS-VLSCNQLLRALVK-EGKFEDVEYVYKEMKRR--R--IELNLDSFNFVLNGLCKA-----------GK 201 (537)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------g~ 201 (537)
++........|+ ...+-..-..|.+ .+..+++...-.+.... + -......|..+.-+|... ..
T Consensus 380 l~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 380 LRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 777665432233 3333333334443 34555555555544441 1 112333444444444332 12
Q ss_pred hhHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047648 202 LNKASDIMEDMKSLGV-SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 280 (537)
..++++.+++..+.+. .|++..|..+- |+. .++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~---~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAE---QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHH---HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 2356666777666543 23333333333 333 56777788887777776555577777777777777788888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------------CC-----CC--CHHHH
Q 047648 281 VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS---------------------GL-----KP--NVVTS 332 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~~--~~~~~ 332 (537)
+.+.....- .-|-.....-+..-..-++.++++.....+..- |. .| ...++
T Consensus 535 vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 777665431 101111111112222344555554444333220 00 00 01111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGL--SPS------VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..+.......+.......- +..... .|+ ...|......+.+.+..++|...+.+.....+. .+..|..
T Consensus 614 r~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYL 689 (799)
T ss_pred HHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHH
Confidence 1111111100000000000 111111 122 123555666777888888988888888765433 6677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHH--HHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVS--LLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
....+...|.+++|.+.|......+ |.++....++..++.+.|+..-|.. ++.++++.+ +.+...|-.+...+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d----p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD----PLNHEAWYYLGEVF 764 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC----CCCHHHHHHHHHHH
Confidence 7788888999999999999888865 4557888999999999998877777 899998755 45888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 047648 483 CQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.|+.++|.+.|....+.
T Consensus 765 k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHccchHHHHHHHHHHHhh
Confidence 9999999999999988873
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.4e-09 Score=104.04 Aligned_cols=241 Identities=22% Similarity=0.181 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSH-----G-IAAGVV-TYNSLINGLCVDGKLDEAVALRDEMMAS-----GL- 325 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~- 325 (537)
..+...+...|...|+++.|+.+++..... | ..|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999887553 2 122322 2334667888999999999999998763 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhC---C
Q 047648 326 KP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ-----GLS-PSV-ITYNTLIDAYCKEGRMEDAFAMRNSMLDR---G 394 (537)
Q Consensus 326 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 394 (537)
.| -..+++.|..+|.+.|++++|...+++..+. +.. |.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2356788888899999999999888876542 221 122 23566777888999999999999876643 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 395 VLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 395 ~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.++ ..+++.|...|...|++++|.+++++++.. | ..-....++.+...|.+.+.+++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 458899999999999999999999988754 1 1122456788899999999999999999988765
Q ss_pred hhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 464 EKEKKWPN----IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 464 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
. .-+.|+ ..+|..|...|.+.|+++.|.++.+....
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 333333 46889999999999999999999988763
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=6.5e-10 Score=108.34 Aligned_cols=252 Identities=14% Similarity=0.213 Sum_probs=146.2
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
+-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-+..+.+...|+.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334445555566666666666666666665555 5555555555555555555555555555555444 3
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH----HCC-----------------CCCCHHHHHHHHHHHhccCCHHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMV----ENG-----------------ILPNEVTFNTLIDGFCKDENISA 277 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~----~~~-----------------~~p~~~~~~~l~~~~~~~g~~~~ 277 (537)
|.+.+|..|..+|...|+.-.++...+.+.... ..| ..||. ...+....-.|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHH
Confidence 455556666666655222222222222121111 111 22222 223333444566666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
+++++..+....... +...+++-+.... .+++-....+...+ .|++.+|..++++-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 666665554321110 1111233333222 23333333333333 5888889999998888999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 357 EQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+.|++.+..-|..|+-+ .+....+..+++-|.+.|+.|+..|+.-.+..+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 98888888777777655 77788888888888888999999888887777776554
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=5.5e-09 Score=102.05 Aligned_cols=258 Identities=11% Similarity=0.099 Sum_probs=126.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhcc-------CCCCchHHHHHHHHHHHH
Q 047648 55 KELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCS-------DSLCRNSIIIDMLMLAYV 127 (537)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 127 (537)
+..|..|++.+|..+|.-|+..|+.+.|- ++.-| +..+...-..+|..+.... +...|-+.+|..|..+|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 45688999999999999999999998887 44433 3334444445555554331 112345578888888888
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-RIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
+.||... ++..++ ....+...+...|--.....++..+.-. +.-||.. .++....-.|-++.++
T Consensus 95 ~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 95 IHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 8888765 222222 1112233333444333333333332111 1122222 1223333344445555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
+++..+....-. . .+..+++-+... ...+++-....+.+.+ .|++.+|..++.+-.-+|+.+.|..++.+|.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 544443321100 0 000012222221 2222222222222222 3555555555555555556666666666665
Q ss_pred hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
+.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 55555555444444333 4555555555555555555555555544443333
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.2e-07 Score=87.21 Aligned_cols=408 Identities=13% Similarity=0.102 Sum_probs=218.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCC
Q 047648 67 GRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYG 146 (537)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 146 (537)
-.=++.....+.+++|.+....++..+ |.+...+..=+-++.+.+++++|+.+.+.-...
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-------------------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~- 75 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-------------------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL- 75 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-------------------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-
Confidence 334566667778888888777776653 344555666666777888888887554433211
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHH
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP-KVVTYN 225 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 225 (537)
..+.+.+--=.-+..+.+..++|+..++...+ .+..+...-...+.+.|++++|.++|+.+.+.+.+- +...-.
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 11111110112233467778888877772222 134456666677778888888888888886653210 111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCCHHHHHHHHHHHHh--------CCC----
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT---LIDGFCKDENISAAMKVFEEMGS--------HGI---- 290 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--------~~~---- 290 (537)
.++.+-.. ..+. + +......| ..+|.. ..-.+...|++.+|+++++.... ...
T Consensus 151 nl~a~~a~-------l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 151 NLLAVAAA-------LQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE 218 (652)
T ss_pred HHHHHHHh-------hhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 11111111 0010 1 11111122 112222 22234455666666666665511 000
Q ss_pred -CCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHHH-----------------------------
Q 047648 291 -AAGV-VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT----SNAL----------------------------- 335 (537)
Q Consensus 291 -~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l----------------------------- 335 (537)
.... ..-..+...+-..|+.++|..++...++.. ++|... -|.+
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 0000 011223334445666666666666665543 222211 1111
Q ss_pred ------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hcCChHHHHHHHHHHHhCCC
Q 047648 336 ------------------INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC--KEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 336 ------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 395 (537)
+..|. +..+.+.++-.... +..|. ..+..++.... +...+..|.+++...-+..+
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 11111 11112222111111 11222 23333333322 23357778888887777655
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMN--------ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
.-...+....++.....|+++.|.+++. .+.+.+.. +.+...+...+.+.++-+.|..++.+++......
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 5345677788888899999999999999 55554433 4566677788888888888888888887633222
Q ss_pred CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 468 KWPNIV----TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 468 ~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
.+... ++..+...-.+.|+-++|..+++++.+.. .+|..+...++.+|++..
T Consensus 451 -~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 451 -QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred -cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 12222 33334444466899999999999999843 357788888888888754
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=1e-07 Score=90.47 Aligned_cols=425 Identities=15% Similarity=0.117 Sum_probs=276.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
|-.++..| ..+++....++++..++. . +..+.+.....-.+...|+-++|.+..+...+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-F------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-C------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 33344433 455666666766666653 1 333344555555667789999999999988876
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
. ..+.+.|..+.-.+....++++|.+.|......+.. |...+.-+.-.-++.|+++.......++.+.. +.....|.
T Consensus 71 d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~ 147 (700)
T KOG1156|consen 71 D-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI 147 (700)
T ss_pred C-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence 5 347788988888888889999999999999987643 77888888888889999999998888888763 22455677
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCChhh-H
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLI------DGFCKDENISAAMKVFEEMGSHGIAAGVVT-Y 297 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 297 (537)
.+.-++.- .|+...|..++++..+.. -.|+...|.... ....+.|.+++|.+.+..-... + .|-.. -
T Consensus 148 ~~Avs~~L---~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~ 222 (700)
T KOG1156|consen 148 GFAVAQHL---LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFE 222 (700)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHh
Confidence 77777766 799999999999988764 346666654332 3445678888888887766543 1 12222 2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC-KKKLVEKAR-VLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
.+-...+.+.+++++|..++..+... .||..-|...+..+. +..+..++. .+|....+.-.. ...-..+--...
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl 298 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVL 298 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHh
Confidence 34456778999999999999999987 477666655544443 344444444 677766554211 111111111111
Q ss_pred hcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCChHHH--H
Q 047648 376 KEGR-MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN----NG----------MRAGLVTY--N 438 (537)
Q Consensus 376 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~ 438 (537)
.... .+..-+++..+.+.|+++ ++..+...|-.....+-..++.-.+.. .| -+|....| -
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 2222 333445666777777654 233333333322222211111111111 11 14555444 4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN-IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
.+++.|-+.|+++.|...++.+++ ..|+ +..|..=.+.+...|++++|..++++..+.+ .||...-.....-+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId-----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID-----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc-----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 567888999999999999999985 2343 4556666788999999999999999999864 34555555777888
Q ss_pred HhcCCcCCccCCCC
Q 047648 518 MEKGFIPDIEGHMY 531 (537)
Q Consensus 518 ~~~g~~~~a~~~l~ 531 (537)
.+++.+++|+.++.
T Consensus 450 LrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 450 LRANEIEEAEEVLS 463 (700)
T ss_pred HHccccHHHHHHHH
Confidence 88888888866543
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=9.9e-08 Score=83.82 Aligned_cols=408 Identities=10% Similarity=0.069 Sum_probs=231.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh------HH-----HHHHhhhcc
Q 047648 41 ADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV------ST-----IFHALSTCS 109 (537)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~------~~-----~~~~~~~~~ 109 (537)
.+...|..++++... .+......+-.++.+++.+.|++++|...+.-+....+.+.- .. .+....+..
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 356667766666653 233334456677778888888888887777665543111110 00 011111111
Q ss_pred CCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047648 110 DSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF 189 (537)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (537)
...+.++-.-..+...-.+.++-++-..+.+.+.+. ..---++.......-.+++|.++|..+...+ |+-...
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 111334444444555555566666655555544431 1222334444444446778888888877652 333344
Q ss_pred HH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCH----------------------------
Q 047648 190 NF-VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKM---------------------------- 240 (537)
Q Consensus 190 ~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---------------------------- 240 (537)
|. +.-+|.+..-++-+.+++.-..+. ++-+....|.......+.- .|+.
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~-ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLI-NGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhh-ccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 43 334566677777777777766654 1222333343333333210 1211
Q ss_pred -----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-------
Q 047648 241 -----YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG------- 308 (537)
Q Consensus 241 -----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 308 (537)
+.|++++-.+.+. -+.+-..|+-.|.+.+++.+|..+.+++.-. .|-......+. +...|
T Consensus 266 vFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSre 337 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSRE 337 (557)
T ss_pred EEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHH
Confidence 1222222222211 1233455666788999999999988776421 22222222222 22333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVV-TSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
...-|.+.|.-.-.++..-|+. --.++..++.-..++++++..+..+...-...|...+ .+..+++..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 3556666666655555443332 2344555566667889999998888776444344444 4789999999999999999
Q ss_pred HHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 388 NSMLDRGVLPDVSTYN-CLIAGLSREGNVEGVRNIMNELVNNGMRAGL-VTYNILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
-++....++ |..+|. .+.++|.+.+.++.|+.++-++-. +.+. .....+..-|.+++.+--|-+.|+.+..
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--- 489 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--- 489 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---
Confidence 988876666 555665 556788899999999887755432 2233 3344556778899998888888887743
Q ss_pred cCCCCCHHHHH
Q 047648 466 EKKWPNIVTYN 476 (537)
Q Consensus 466 ~~~~~~~~~~~ 476 (537)
..|++..|.
T Consensus 490 --lDP~pEnWe 498 (557)
T KOG3785|consen 490 --LDPTPENWE 498 (557)
T ss_pred --cCCCccccC
Confidence 357777665
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=8.6e-08 Score=89.06 Aligned_cols=410 Identities=12% Similarity=0.054 Sum_probs=252.5
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC
Q 047648 71 HSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS 150 (537)
Q Consensus 71 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 150 (537)
++....|+++.|..++...+.. .|+|-+.|..-..+|...|++.+|++=-.+.++.+ |.-
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l-------------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w 69 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML-------------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDW 69 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc-------------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-Cch
Confidence 4455667777777777666544 26688999999999999999999999888888764 234
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCC---CCCChhhH
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG---KLNKASDIMEDMKSLG---VSPKVVTY 224 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~---~~~~~~~~ 224 (537)
...|.....++.-.|++++|...|.+-++.... |...++.+..++.... +.-.--.++..+.... .......|
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 668999999999999999999999998887432 5556666776662110 0000001111111100 00122233
Q ss_pred HHHHHHHhcCCC----CCCHHHHHHHHHHHHH--------CC-------CCC----------------------CHHHHH
Q 047648 225 NILIDGYCKKGG----IGKMYKADAVFKDMVE--------NG-------ILP----------------------NEVTFN 263 (537)
Q Consensus 225 ~~ll~~~~~~~~----~~~~~~a~~~~~~~~~--------~~-------~~p----------------------~~~~~~ 263 (537)
..++..+-+... ..+.....+..-.+.. .| ..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 334433322100 0001111111111100 00 001 011234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HH
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA-------LI 336 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll 336 (537)
.+..+..+..+++.|.+.+....... .+..-++....+|...|.+......-....+.|. ....-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence 56666777778888888888777653 3444555566677777777777766666665542 11222222 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.+|.+.++++.+...|.+.......|+. ..+....+++........-.++.. ..-...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence 3555566777777777776544222221 222333444554444443333221 222233366778899999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
.|+..|.++++.. |.|...|..-.-+|.+.|.+..|++-.+..+++. ++....|..=..++....+|+.|.+.|+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 7788999999999999999999999999888753 3445556666667777889999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 497 ELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+.++ ..|+..-+..-+.-|..+.
T Consensus 451 eale--~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHh--cCchhHHHHHHHHHHHHHh
Confidence 9998 4488777766666666653
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.9e-11 Score=78.31 Aligned_cols=50 Identities=40% Similarity=0.848 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=2.5e-07 Score=89.61 Aligned_cols=370 Identities=14% Similarity=0.094 Sum_probs=215.0
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHH
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYN 225 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 225 (537)
+..+...|..+.-++...|+++.+-+.|++...--+. ....|+.+...|...|.-..|..+++.-......|+.. .+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4446666666666777777777777777665543222 55566666666777777666776666554432223322 232
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHhCCC
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVEN--GI--LPNEVTFNTLIDGFCKD-----------ENISAAMKVFEEMGSHGI 290 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~ 290 (537)
..-..|.+. .+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 398 masklc~e~--l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 398 MASKLCIER--LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHhc--hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 233333332 45555555555554441 10 11223333333333321 123455556666655432
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-------
Q 047648 291 AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSP------- 362 (537)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------- 362 (537)
. |+.....+.--|+..++.+.|.+...+..+-+-..+...|..+.-.+...+++.+|+.+.+...+. |...
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2 222222333345566667777777777666544556666666666666667777777666655432 1100
Q ss_pred -----------CHhHHHHHHHHHH-----------------------hcCChHHHHHHHHHHH--------hCC------
Q 047648 363 -----------SVITYNTLIDAYC-----------------------KEGRMEDAFAMRNSML--------DRG------ 394 (537)
Q Consensus 363 -----------~~~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~~~--------~~~------ 394 (537)
...+...++...- ..++..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0001111111110 0001111111111110 001
Q ss_pred -----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 395 -----VLPD------VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 395 -----~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
..|+ ...|......+.+.++.+++...+.+..... +.....|......+...|..++|.+.|..+..+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1122 1245556667778888899988888887764 566788888888999999999999999999876
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCC-CHHhHHHHHHHHHhcCCcCCcc
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANG--LLNELLEKGLIP-NQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
++ -++.+..++...+.+.|+..-|.. ++..+++.+ | +...|..+...+.+.|+.++|.
T Consensus 714 dP----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 714 DP----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred CC----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHH
Confidence 53 356678899999999998888887 999999954 5 6789999999999999988773
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=1.2e-08 Score=93.63 Aligned_cols=229 Identities=13% Similarity=-0.031 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 274 NISAAMKVFEEMGSHG-IAA--GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..+.++.-+.++.... ..| ....|..+...+...|++++|...|.+..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554321 111 12345555556666666666666666666643 3345666666666777777777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.|++..+..+. +...|..+..++...|++++|.+.++...+..+. ++. .......+...++.++|...+++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77766665433 4455666666666677777777777776665433 221 1111122334566777777775544322
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.|+...+ .......|+...+ +.++.+.+-.... .+.....|..+...+...|++++|+..|++.++.+ .||.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2222111 1222334444333 2333333100000 01134567777778888888888888888887743 2354
Q ss_pred HhHHH
Q 047648 508 TTYQI 512 (537)
Q Consensus 508 ~~~~~ 512 (537)
.-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 44444
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.7e-11 Score=77.60 Aligned_cols=49 Identities=41% Similarity=0.862 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 047648 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYC 232 (537)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 232 (537)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=4.3e-09 Score=86.93 Aligned_cols=210 Identities=14% Similarity=0.061 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
.+...+...|.+.|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++.....+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 345566778888999999999998888864 445677888888888899999999999888877544 667788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 375 CKEGRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 375 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
|..|++++|...|++.......+ -..+|..+.-+..+.|+++.|...|++.++.. +..+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88889999999888888653222 24578888888888899999999998888875 44566777888888888999999
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
...++.... +..++..+.-..|+.-.+.|+.+.+-+.=.++.. ..|...-+...
T Consensus 193 r~~~~~~~~----~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERYQQ----RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHh----cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 888888753 3347777777778888888888888887777766 45666655543
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=4.3e-08 Score=84.02 Aligned_cols=393 Identities=15% Similarity=0.090 Sum_probs=238.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
+.+.+.-+.+..++.++.+++....++. +.+....+.+..+|....++..|-+.|+.+...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-------------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-------------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667778888999998888777662 456677888999999999999999999999875
Q ss_pred CCCCChhhHHH-HHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047648 146 GLKSSVLSCNQ-LLRALVKEGKFEDVEYVYKEMKRRRIELNLD--SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV 222 (537)
Q Consensus 146 ~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 222 (537)
-|...-|.. -...+.+.+.+.+|+.+...|... ++.. ....-.......+++..+..++++....| +..
T Consensus 74 --~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad 145 (459)
T KOG4340|consen 74 --HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EAD 145 (459)
T ss_pred --ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccc
Confidence 344443332 345777889999999999888753 1211 11111122335788889999988876433 444
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---------
Q 047648 223 TYNILIDGYCKKGGIGKMYKADAVFKDMVEN-GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA--------- 292 (537)
Q Consensus 223 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------- 292 (537)
+.+.......+ .|+++.|.+-|+...+- |.. ....|+..+. ..+.|+++.|+++..++.++|+..
T Consensus 146 ~~in~gCllyk---egqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 146 GQINLGCLLYK---EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred hhccchheeec---cccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 44444444455 79999999999988765 444 4566765554 456789999999999988876431
Q ss_pred ----Chh---------------hHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 293 ----GVV---------------TYNSLINGLCVDGKLDEAVALRDEMMAS-GLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 293 ----~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|+. .+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++....+-+
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 111 1222233456788888888888877543 2244667765543222 234455555556
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047648 353 DDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (537)
.-+.+.++- ...||..++-.||++.-++-|-+++.+-..... ..+...|+.+=......-..+++.+-++.+...- .
T Consensus 300 qFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l-~ 377 (459)
T KOG4340|consen 300 QFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML-T 377 (459)
T ss_pred HHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-H
Confidence 666666553 566888888899999888888887765332211 1123333333222233445566665555443320 0
Q ss_pred CChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 432 AGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.......+-++--...++ ...|++-+++.+++ -..+..+....|.+..++..+.++|+.-.+
T Consensus 378 ~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-------YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 378 EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-------YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 000111111111111222 22233333333321 111223344557778899999999988776
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.2e-07 Score=79.55 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=206.9
Q ss_pred CCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCCCCHH
Q 047648 164 EGKFEDVEYVYKEMKRR-RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 164 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~ 241 (537)
.++-..+...+-.+... -++-|+.....+..++...|+.++|...|++.... .|+.. ......-.+.+ .|+++
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~---eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQ---EGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHh---ccCHh
Confidence 34444444433333222 25567888899999999999999999999998765 33322 22222222334 67787
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
....+...+.... .-....|..-+......+++..|+.+-++.++.+ +.+...|-.-...+...+++++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 7777777776542 1133344444455566789999999999888753 2244555555577889999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHh-cCChHHHHHHHHHHHhCCCCCCH
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLI-DAYCK-EGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
... +-+..+|..++++|...|.+.+|...-+...+. ...+..+...+. ..+.- ...-++|.++++..+...+. -.
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~ 438 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT 438 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence 752 357789999999999999999998887776554 223566666553 33332 23357899999888875432 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
...+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|..+++++
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45677788899999999999999999885 6899999999999999999999999999998643
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=2.9e-08 Score=82.16 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGF 339 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 339 (537)
.+...|.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445666777888888888888888887764 2256677777888888888888888888887753 34556777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 340 CKKKLVEKARVLFDDISEQGL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
|..|.+++|...|++....-. .--..+|..+.-+..+.|+++.|.+.|++.++..+. .+.+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 888888888888888776411 113456777777777888888888888888877554 455666777777788888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
..+++.....+ .++..+.-..|..--..|+.+.+-+.=..+.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888777765 3777777777777777888777766655553
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=4.6e-09 Score=100.51 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhC-----C--
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDY-----GL-KSSVL-SCNQLLRALVKEGKFEDVEYVYKEMKRR-----R-- 181 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 181 (537)
..++..+...|...|+++.|..+++...+. |. -|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355555777777777777777777776654 10 12222 2333555666666666666666665432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 182 IELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
.+.-..+++.|...|.+.|++++|...+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 11122245555566666666666666665543
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.16 E-value=5.7e-07 Score=85.88 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=89.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--hHHHHHHHHHHh
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLS-PSV--ITYNTLIDAYCK 376 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~ 376 (537)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... |+. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555532 223344445555555555555555555554443211 111 223345555555
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCChHHHHHHHHHHHhcC
Q 047648 377 EGRMEDAFAMRNSMLDRGV-LPDVSTY-N--CLIAGLSREGNVEGVRNI--MNELVNNGM--RAGLVTYNILVGALCKDG 448 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g 448 (537)
.|++++|..++++...... .+..... + .++.-+...|....+.+. +........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666655543221 1111111 1 112222223322222221 111100000 011112224555666777
Q ss_pred ChHHHHHHHHHHHHchhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 449 KSKKAVSLLDEMFKMEKE----KK-WPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+.++|..+++.+...... +. ...+........++...|++++|.+.+.+.+..
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777776542222 00 011222233334556788888888888877654
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=8.2e-08 Score=88.18 Aligned_cols=197 Identities=16% Similarity=0.025 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
...|..+...|...|++++|...|++..+.. +.+..+|+.+...+...|++++|...|+...+..+. +..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556777788888899999999998888865 446778888888888999999999999888876433 56677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047648 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENI 275 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 275 (537)
+...|++++|.+.|++..+.. |+..........+.. .++.++|...+.+..... .|+...+ .+... ..|+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~ 212 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAES---KLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKI 212 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHc---cCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCC
Confidence 888899999999988888763 443322222222223 567888888886655332 2332222 22222 23444
Q ss_pred HHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 276 SAAMKVFEEMGSH---GI---AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 276 ~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
..+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++....+
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 233333321 11 1123467777777888888888888888877654
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.1e-06 Score=79.01 Aligned_cols=415 Identities=14% Similarity=0.105 Sum_probs=241.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHH
Q 047648 39 SDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSII 118 (537)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (537)
...+.+.|......++.. .|.+..++..=+-++...+.|++|..+++..... .. .+...
T Consensus 24 ~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~----------------~~~~~ 82 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LV----------------INSFF 82 (652)
T ss_pred cchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hh----------------cchhh
Confidence 445677788888888765 4667777777777888889999999776643321 00 00000
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG-LC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 197 (537)
| -=+-+..+.++.++|+..++...+ .+..+...-...+.+.|++++|..+|+.+.+.+.+ + +..-+++ +.
T Consensus 83 f-EKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 F-EKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLL 153 (652)
T ss_pred H-HHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHH
Confidence 1 113456678999999999984332 24446666678889999999999999999887543 2 2211111 11
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-------CCCCH-------HHHH
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-------ILPNE-------VTFN 263 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~p~~-------~~~~ 263 (537)
..+-.-.+. +.+ .....| ..+|..+.+..|..-..|++.+|++++......+ -.-+. ..-.
T Consensus 154 a~~a~l~~~-~~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAALQVQ-LLQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHhhhHH-HHH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111111111 222 222222 4456555554444333789999999888873211 11000 1123
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhCCCHH-------------HHHHHHHHHH-----
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTY----NSLINGLCVDGKLD-------------EAVALRDEMM----- 321 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-------------~A~~~~~~~~----- 321 (537)
.+...+...|+.++|..+|...++... +|.... |.++..-....-++ -+..+...+.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566678999999999988887643 233221 12211111000000 0000000000
Q ss_pred -----------------------Hc--CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 322 -----------------------AS--GLKPNVVTSNALINGFCK--KKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 322 -----------------------~~--~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
.. +..|. ..+..++..+.+ ...+..+..++....+..+.-...+.-.++...
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 00 11222 333444433332 224677777777776665444455666777788
Q ss_pred HhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChH----HHHHH
Q 047648 375 CKEGRMEDAFAMRN--------SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAGLV----TYNIL 440 (537)
Q Consensus 375 ~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~l 440 (537)
...|+++.|.+++. .+.+.+.. +.+-..+...+.+.++.+.|..++.+.++. ...+... ++.-+
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 89999999999999 55554444 345566677778888877787777776643 1112222 33334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
...-.+.|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+-+.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~----n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKF----NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHh----CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 44556779999999999999853 367899999999998865 45666655444
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=9.3e-07 Score=84.44 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL---SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF 189 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (537)
|..+..+..+...+...|+.+.+.+.+.+..+.. +++.. ........+...|++++|...+++..+..+. +...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHH
Confidence 3445566667777777788888777777665542 22211 1222233456677888888888877765322 33333
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 190 NFVLNGLCK----AGKLNKASDIMEDMKSLGVSPKV-VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 190 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
.. ...+.. .+..+.+.+.++.. .+..|+. .....+...+.. .|++++|...+++..+.. +.+...+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~---~G~~~~A~~~~~~al~~~-p~~~~~~~~ 153 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEE---AGQYDRAEEAARRALELN-PDDAWAVHA 153 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 32 222222 33444444444431 1112222 222333445555 677777777777777653 224556666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCC-CCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGI-AAGV--VTYNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
+...+...|++++|...+++...... .++. ..|..+...+...|++++|..+++++..
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777777777777665421 1121 2344566677777777777777777653
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=1.7e-06 Score=93.68 Aligned_cols=377 Identities=11% Similarity=0.016 Sum_probs=228.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.....+...|++.+|+..+...... ..-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455566666555544333211 00011122223344556777777777766532111112333344555667889
Q ss_pred ChhHHHHHHHHHHhCCC------CCChh--hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 047648 201 KLNKASDIMEDMKSLGV------SPKVV--TYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE----VTFNTLIDG 268 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~------~~~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 268 (537)
+++++...++.....-- .+... ....+...+.. .|++++|...+++....-...+. ...+.+...
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN---DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 99999999988754310 11111 11222233344 79999999999987763111121 234556667
Q ss_pred HhccCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSH----GI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS----GLK--P-NVVTSNALI 336 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll 336 (537)
+...|++++|...+++.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 78899999999999887642 11 111234455667788999999999998887652 211 1 223344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHH--H--HHHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQ----GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--VLPDVST--Y--NCLI 406 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~--~--~~l~ 406 (537)
..+...|++++|...+.+.... +.......+..+...+...|+++.|...++...... ....... . ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999999887543 111123345556677889999999999998875421 1111111 0 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCC-CHHHHHHHHHH
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWP-NIVTYNVLIKG 481 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~ 481 (537)
..+...|+.+.|...+........... ...+..+..++...|++++|...++++...... +..+ ...+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 444568899999999877654321111 112456777889999999999999998764322 2222 23456677788
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 047648 482 FCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g 502 (537)
+.+.|+.++|...+.+.++..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998753
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.6e-07 Score=79.32 Aligned_cols=330 Identities=12% Similarity=0.109 Sum_probs=213.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN-FVLNGLC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 197 (537)
+++++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..|+++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5677777888999999999999888764 347778888899999999999999999999876 44554443 2355677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISA 277 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 277 (537)
+.+.+.+|+.+...|... |+...-..-+.+..+.. .+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcc-cccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999988753 23333233333333322 577778888888776432 44555555556678999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---------------------HHHHHH
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVV---------------------TSNALI 336 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------------~~~~ll 336 (537)
|.+-|+...+-+--.....|+.. -++.+.++++.|++...+++++|++..+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999998875433355666654 46678999999999999999887532110 112222
Q ss_pred H-------HHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 337 N-------GFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 337 ~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
. .+.+.++++.|.+.+-.|.-+ ....|+.|...+.-. --.+++.+..+-+.-++..++. ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 2 234567777777777666322 223355554433221 1244555556666666666554 45677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 409 LSREGNVEGVRNIMNELVNNGM-RAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
|++..-++.|-.++.+-..... -.+...|+.|=......-.+++|.+-++..-
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888778877777764322111 1223344433333334455677766666554
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=5e-06 Score=73.12 Aligned_cols=88 Identities=6% Similarity=-0.043 Sum_probs=45.6
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
+...|+...|+.....+.+.. +-|...|..-..+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334555556666555555432 2244445555555666666666655554444432 23344444445555555666665
Q ss_pred HHHHHHHHHc
Q 047648 349 RVLFDDISEQ 358 (537)
Q Consensus 349 ~~~~~~~~~~ 358 (537)
+...++..+.
T Consensus 243 L~~iRECLKl 252 (504)
T KOG0624|consen 243 LKEIRECLKL 252 (504)
T ss_pred HHHHHHHHcc
Confidence 5555555553
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-05 Score=75.39 Aligned_cols=386 Identities=13% Similarity=0.018 Sum_probs=233.4
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS 116 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (537)
.-..++.+.|...|..++.. .|++...|+.-..++...++|++|.+=-..-++. .|.++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-------------------~p~w~ 70 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-------------------NPDWA 70 (539)
T ss_pred hcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-------------------CCchh
Confidence 34557888999999999887 5679999999999999999999987654444433 26778
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhC---CCCCCHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRR---RIELNLDSFN 190 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~---~~~~~~~~~~ 190 (537)
..|.-...++.-.|++++|+..|.+-++.. +.+...++.+..+....... -.--.++..+... ........|.
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 889999999999999999999999988864 34556667777666211100 0000111111100 0001112233
Q ss_pred HHHHHHHhc-------CChhHHHHHHHHH--------HhCC-------CCC---------C-------------hhhHHH
Q 047648 191 FVLNGLCKA-------GKLNKASDIMEDM--------KSLG-------VSP---------K-------------VVTYNI 226 (537)
Q Consensus 191 ~l~~~~~~~-------g~~~~a~~~~~~~--------~~~~-------~~~---------~-------------~~~~~~ 226 (537)
.++..+-+. .+.....+..-.+ ...| ..| . ..-...
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 333322111 0111111111111 0001 111 0 111334
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHH-------
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS------- 299 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------- 299 (537)
+.++..+ ..++..|++.+....+.. -+..-++....+|...|.+.++........+.|-. ...-|+.
T Consensus 230 lgnaayk---kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 230 LGNAAYK---KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHH---hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5555555 577888888888877764 35666677778899999988888887777665422 2222333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
+..+|.+.++++.++..|.+.+.....|+. ..+....+++........-.++.. ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 334566678899999999887765433332 223334444444444433322221 1112222555667788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
+..|+..+.+++...+. |...|....-+|.+.|.+..|+.-.+..++.+ ++....|..=..++....+++.|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777644 77778777778888888888777777776664 44455666666666667777788888877
Q ss_pred HHH
Q 047648 460 MFK 462 (537)
Q Consensus 460 ~~~ 462 (537)
.++
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 765
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=2.9e-08 Score=89.74 Aligned_cols=250 Identities=14% Similarity=0.141 Sum_probs=150.3
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 160 ALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
-..-.|++..++.-.+ ......+.+......+.+++...|+.+.++ .++.... .|.......+...+.. .++
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~---~~~ 81 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS---PSD 81 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT---STT
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC---ccc
Confidence 3444677777665554 222222223444556677777888766543 3333322 4555555444433332 344
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGIL-PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
.+.++.-+++....+.. .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555444333322 23333333345666778888888877542 256666777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 319 EMMASGLKPNVVTSNALINGFC----KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
.|.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 156 ~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 887642 33 33444444433 334688888888887665 45677888888888888888888888888888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 047648 395 VLPDVSTYNCLIAGLSREGNV-EGVRNIMNELVNN 428 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 428 (537)
.. ++.++..++.+....|+. +.+.+++.++...
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55 677777777777777777 6677788777765
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=1.3e-05 Score=70.55 Aligned_cols=320 Identities=11% Similarity=0.073 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHH
Q 047648 60 SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAF 139 (537)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 139 (537)
+.+..-+..+...+...|++.+|..-+...++. + |.+-.++---...|+..|+-..|+.-|
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~-d------------------p~~Y~aifrRaT~yLAmGksk~al~Dl 95 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEG-D------------------PNNYQAIFRRATVYLAMGKSKAALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-C------------------chhHHHHHHHHHHHhhhcCCccchhhH
Confidence 344445566777777777777777766665543 2 122222223345788888888898888
Q ss_pred HHHhhCCCCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 140 KRAGDYGLKSSVLS-CNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
.++++. +||... -..-...+.++|+++.|..=|+.+++... +..+ ...++.+.--.++-..+.+++
T Consensus 96 ~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l~~ql------ 162 (504)
T KOG0624|consen 96 SRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVLVQQL------ 162 (504)
T ss_pred HHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHHHHHH------
Confidence 888874 666543 23334567788999999988888887642 2211 112222222222222222111
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (537)
. .+.- .|+...|+..+..+++.. +-|...|..-..+|...|++..|+.-+....+..- -+..++.
T Consensus 163 ---------~-s~~~---~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~y 227 (504)
T KOG0624|consen 163 ---------K-SASG---SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHY 227 (504)
T ss_pred ---------H-HHhc---CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHH
Confidence 1 2222 477777777777777642 33666677777777777777777776666655422 2445555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH----H---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 047648 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA----L---------INGFCKKKLVEKARVLFDDISEQGLSPSV- 364 (537)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 364 (537)
-+-..+...|+.+.++...++.++. .||....-. + +......+++.++..-.+...+..+....
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 5566667777777777777777663 354322111 0 11223345566666666666655333112
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 365 --ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 365 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+-.++...|++.+|+....++++..+. |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22344555566667777777777777664322 46666666777777777777777777776653
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.1e-05 Score=79.03 Aligned_cols=388 Identities=12% Similarity=0.080 Sum_probs=227.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 61 HSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
.+..+|..|...|.+.++++-|.--+..|... ...+.+++..+.+ .+ .-.-+...-...|..++|..+|+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a----RgaRAlR~a~q~~----~e--~eakvAvLAieLgMlEeA~~lYr 824 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA----RGARALRRAQQNG----EE--DEAKVAVLAIELGMLEEALILYR 824 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh----hhHHHHHHHHhCC----cc--hhhHHHHHHHHHhhHHHHHHHHH
Confidence 34567999999999999999998877766533 1222333333321 11 11223334466799999999999
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047648 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
+..+. ..|=..|...|.+++|.++-+.--+. . =..||......+-..++.+.|++.|++...
T Consensus 825 ~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~------ 886 (1416)
T KOG3617|consen 825 QCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGV------ 886 (1416)
T ss_pred HHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCC------
Confidence 99863 34445677789999999987764333 2 334677777777788999999999986432
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047648 221 VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSL 300 (537)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (537)
..++. .+.+ ..+......+.+.+. |...|......+-..|+.+.|+.+|..... |-.+
T Consensus 887 -hafev-~rmL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 887 -HAFEV-FRML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred -hHHHH-HHHH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 22221 1122 122223333444332 556666666667778899999988877764 5667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHhHHHHHHH
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG--------LSPSVITYNTLID 372 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~ 372 (537)
++..|-+|+.++|-++-++- .|......+.+.|-..|++.+|..+|.+..... -..+...+|
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n---- 1014 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN---- 1014 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 77778888888887776552 355666677888888888888888887654210 000111111
Q ss_pred HHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCCCChHHHHHH
Q 047648 373 AYCKEG--RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE--------LVNN--GMRAGLVTYNIL 440 (537)
Q Consensus 373 ~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 440 (537)
.+...| +.-.|-+.|++. |.. +...+..|-+.|.+.+|+++--+ ++.. ....|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111 122222233221 111 11223345556665555543211 1111 222345555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH------------------------chhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFK------------------------MEKEKKWPN----IVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 492 (537)
.+.+....++++|..++-.+.+ ..+.+ .|+ ......+...|.++|.+..|.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~-~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD-MPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC-CccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5666666666666655443322 11111 222 345677788899999999988
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 493 GLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
+-|-+.-+ -...++++.++|+.++.
T Consensus 1166 KKfTQAGd---------Kl~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1166 KKFTQAGD---------KLSAMRALLKSGDTQKI 1190 (1416)
T ss_pred HHHhhhhh---------HHHHHHHHHhcCCcceE
Confidence 77666532 12456778888887654
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=7.4e-06 Score=88.73 Aligned_cols=340 Identities=11% Similarity=-0.002 Sum_probs=217.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC------CCC--HHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI------ELN--LDSFNFVL 193 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~ 193 (537)
....+...|++..+..+++.+.......+..........+...|+++++...+......-- .+. ......+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 4455667788888777777653221122233334445566788999999999987754311 111 12223334
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GI-LPNEVTFNT 264 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~ 264 (537)
..+...|++++|...+++..+.-...+. ...+.+...+.. .|++++|...+.+.... |. .+...++..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~---~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC---KGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 5566899999999999998763111121 233445555666 79999999998887642 11 111234556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC--CHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSH----GIA--A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--LKP--NVVTSN 333 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~ 333 (537)
+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 677788899999999998876542 211 1 12334455667778899999999998876531 112 233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLSP-SVITY-----NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV---STYNC 404 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ 404 (537)
.+...+...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56677888999999999998875431110 11111 11224455688999999988776543221111 12445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+..++...|+.++|...+++.... |.... ..++..+..++...|+.++|...+.+++++.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677788999999999999988764 22222 3466777888999999999999999998744
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1e-07 Score=89.41 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=188.5
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
.-+.+.|++.+|.-.|+...+.. +-+...|..|......+++-..|+..+.+..+.. +-+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567899999999999988875 3378899999999999999999999999999864 446788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHH-----------HHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLID-----------AYCKEGRMEDAFAMRNSML-DRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
.|.+.++.-....++ |..+.. .+.....+....++|-++. ..+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999887654321 111110 1111112333444444444 44545788889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
+++|...|+.++... |.|...||.|...++...+.++|+..|.+++++.+. =+.++..|.-.|+..|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999875 667899999999999999999999999999975422 245677788899999999999999
Q ss_pred HHHHHHc---------CCCCCHHhHHHHHHHHHhcCCcC
Q 047648 495 LNELLEK---------GLIPNQTTYQIVREEMMEKGFIP 524 (537)
Q Consensus 495 ~~~~~~~---------g~~p~~~~~~~l~~~~~~~g~~~ 524 (537)
|=+.+.. +..++...|..+-.++.-.++.|
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8776642 11233467888888888887766
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=6.7e-08 Score=87.35 Aligned_cols=250 Identities=16% Similarity=0.061 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 466666654443 222111112333444556666666655433 2222222 44444444444433333344444444
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 317 RDEMMASGLK-PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
+++....... .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 4443332222 12222223334455567777776666432 245555666677777777777777777776542
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 396 LPDVSTYNCLIAGLS----REGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
.|. +...+..++. ..+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.++++++++.. +.+
T Consensus 162 -eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~ 234 (290)
T PF04733_consen 162 -EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----PND 234 (290)
T ss_dssp -CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCH
T ss_pred -CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCC
Confidence 232 2333333332 233577777777776554 35667777777777777777777777777765322 335
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 047648 472 IVTYNVLIKGFCQKGKL-EDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 507 (537)
+.++..++.+....|+. +.+.+.+.++.. ..|+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 56666666666666666 556667777666 33543
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.2e-05 Score=77.62 Aligned_cols=333 Identities=13% Similarity=0.119 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHH-----------HHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYV-----------YKEMKRRRI--ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~-----------~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
..+.|....+.+.+..+.+--.++ .++..+.++ ..|+......+.++...+-..+-+++++++.-..
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~ 1014 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1014 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC
Confidence 334555666666666654443333 333333332 2356666777788888888888888888876321
Q ss_pred --CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----
Q 047648 217 --VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHG----- 289 (537)
Q Consensus 217 --~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 289 (537)
+.-+...-|.++-...+ -+.....++++++..-+. |+ +...+...+-+++|..+|++....+
T Consensus 1015 S~Fse~~nLQnLLiLtAik----ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1015 SVFSENRNLQNLLILTAIK----ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cccccchhhhhhHHHHHhh----cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 11222333445555444 333455556655543321 12 2233334455566666665442110
Q ss_pred ----------------CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 290 ----------------IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 290 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
--..+..|+.+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++..+++.
T Consensus 1084 Lie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred HHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0012334444555545555555444444221 234445555555555555555555444
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
...+..-.|.. =..|+-+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..
T Consensus 1158 MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1158 MARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred HHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 44433222222 223444555555444333222 123444444445555555555544444432
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
...|..|...+...|+++.|.+.-+++ .+..+|..+-.+|...+.+.-| +|....+.....-+..+
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA---------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA---------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 233455555555555555555554444 2455666666666655554322 33333444556667778
Q ss_pred HHHHHhcCCcCCccCCCC
Q 047648 514 REEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 514 ~~~~~~~g~~~~a~~~l~ 531 (537)
++-|-..|.+++....++
T Consensus 1286 i~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHhcCcHHHHHHHHH
Confidence 888888888877766554
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=1.9e-06 Score=86.01 Aligned_cols=442 Identities=12% Similarity=0.030 Sum_probs=240.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNG-KFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
....+..+|+++-....+..|...+..+-+.- +...|.+.|...-+- .+.+...+..+...|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL---Datdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL---DATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44445555555555555555555444433321 111233333332222 35666788889999999999999988844
Q ss_pred HHhhCCC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 141 RAGDYGL-KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 141 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+..+... ..-...|..+.-.+.+.++...+..-|+...+..+. |...|..++.+|...|++..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 4333210 011223444555677788899999999998887655 88889999999999999999999999887753 3
Q ss_pred ChhhHHHHHH--HHhcCCCCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----
Q 047648 220 KVVTYNILID--GYCKKGGIGKMYKADAVFKDMVEN------GILPNEVTFNTLIDGFCKDENISAAMKVFEEMG----- 286 (537)
Q Consensus 220 ~~~~~~~ll~--~~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----- 286 (537)
+. .|..... .-+. .|.+.++...+...... +..--..++..+...+.-.|-..++.++++..+
T Consensus 628 ~s-~y~~fk~A~~ecd---~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECD---NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred Hh-HHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 32 2222111 1223 68888888888776532 111122333333333333344444444444332
Q ss_pred --hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHc
Q 047648 287 --SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV---E---KARVLFDDISEQ 358 (537)
Q Consensus 287 --~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~ 358 (537)
.+....+...|-.+- .|..+|.... .. .|+......+..-..+.+.. + -+.+.+-.-.+
T Consensus 704 ~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls- 770 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS- 770 (1238)
T ss_pred HHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH-
Confidence 222122222332222 2223333322 11 23322222222212222221 1 11111111111
Q ss_pred CCCCCHhHHHHHHHHHHh----c----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 359 GLSPSVITYNTLIDAYCK----E----GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
...+..+|..++..|.+ . .+...|...+...++..-. +..+|+.|.-. ...|++.-+...|-+.....
T Consensus 771 -l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 771 -LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred -HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 11123344444444332 1 1233566777766655333 66677766655 66677777777776666553
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCC
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL----EKGLIPN 506 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~ 506 (537)
+....+|..+.-.+.+..+++.|...|.....+. +.|...|-.........|+.-++..+|..-- ..|--|+
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd----P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD----PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcC----chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 4556777778778888888888888888776543 3466677766666667787777777776622 2344456
Q ss_pred HHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 507 QTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
..-|......-...|++++-...+.+++
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 6666666666666666655554444443
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.8e-07 Score=86.49 Aligned_cols=251 Identities=16% Similarity=0.115 Sum_probs=185.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-..|++.
T Consensus 298 nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 57788888888877776433 67788888888888888888888888887764 23566777777778888888888888
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 317 RDEMMASGLKP--------NVVTSNALINGFCKKKLVEKARVLFDDIS-EQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 317 ~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
+...+....+- +...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88876542100 0000000 11112223444555555554 4454578889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
+.++...+. |..+||.|...++...+.++|+..|.+.++. .|+ +.+.-.|.-.|...|.+++|.+.|-.++.|.+.
T Consensus 454 ~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999988766 8899999999999999999999999999986 565 466777888999999999999999999987655
Q ss_pred CCC------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 467 KKW------PNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 467 ~~~------~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
+.. ++-..|.+|=.++.-.++.|-+.++
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 322 2346888888888888887755544
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=8.8e-07 Score=85.51 Aligned_cols=232 Identities=17% Similarity=0.136 Sum_probs=185.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.-..+...+...|-...|..+|++... |.-++.+|...|+..+|..+..+..++ +||+..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 335677888899999999999987653 667889999999999999999888873 799999999999988
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
...-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.++- ...+|..+..+..+.++++.+.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 888899999999876543 1122222234478999999999998887544 67889999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|..-.... +.+...||.+-.+|.+.|+-.+|...+.++.+- + ..+...|...+-.....|.+++|++.+.++.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc---n-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC---N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999888754 455789999999999999999999999999863 2 45677888888899999999999999999876
Q ss_pred cCC-CCCHHhHHHHHHH
Q 047648 501 KGL-IPNQTTYQIVREE 516 (537)
Q Consensus 501 ~g~-~p~~~~~~~l~~~ 516 (537)
... .-|......++..
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 321 1244444444443
No 103
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=1.2e-05 Score=73.91 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=143.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV--EK 347 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~ 347 (537)
..+..++|+.+..++++.. +-+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456667777777766642 113344554445555555 4677777777777653 33444555444444455542 56
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GN----VEGVRN 420 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~----~~~a~~ 420 (537)
+..+++++.+.+.+ +..+|+....++...|+++++++.++++++.++. +...|+....++.+. |. .++...
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67777777776554 6777777777777778888888888888877666 666676666555544 22 245666
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhc----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC----------
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKD----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG---------- 486 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 486 (537)
+..+++... +-|...|+.+...+... +...+|.+.+.+..+. .+.++.....|+..|+...
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 666666654 55677777777777663 3345677777776541 1346667777777777532
Q ss_pred --------CHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 487 --------KLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 487 --------~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
..++|.++++.+.+ ..|-..-|-.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~--~d~ir~~yw~ 311 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEV--ADPMRRNYWA 311 (320)
T ss_pred hccccccccHHHHHHHHHHHHh--hCcHHHHHHH
Confidence 34678888888843 5555444433
No 104
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=7e-06 Score=75.39 Aligned_cols=215 Identities=11% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
+++.+-..+...++.++|+.++..++..+ +-+..+|+.-..++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33344445555667777777777777754 334456666666666666 467777777777766544 555666555555
Q ss_pred HhcCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 047648 197 CKAGKL--NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD-- 272 (537)
Q Consensus 197 ~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 272 (537)
.+.|+. ++++.+++++.+... -+..+|+...-++.. .|.++++++.+.++++.+.. |..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~---l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRT---LGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 555542 566777777776543 256677776666666 67777777777777776544 555666555444433
Q ss_pred -CC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 273 -EN----ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVD----GKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 273 -g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
|. .++.++...+++... +-+...|+.+...+... ++..+|.+.+.+....+ +.+......+++.|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 21 234555555555442 23556666666665552 23345666666655432 2344555556666553
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=4.6e-05 Score=76.50 Aligned_cols=425 Identities=12% Similarity=-0.034 Sum_probs=224.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC------------------CCCCChHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN------------------GKFTSVSTIFH 103 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~------------------g~~~~~~~~~~ 103 (537)
+...|+..|-.+++. .+.-..+|..|.+.|....+..+|.+-++...+. .+.+.+..+.-
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356677777777665 4556667888888887766666666655544332 12222222211
Q ss_pred HhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 047648 104 ALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE 183 (537)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (537)
...+..+. ..-..-|--..-.|...+++..|+.-|+...+.. |.|...|..++.+|...|++..|.++|++.....+.
T Consensus 551 ~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 11110000 0001222235567888899999999999999875 458889999999999999999999999988776322
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-------H
Q 047648 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG------VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-------M 250 (537)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-------~ 250 (537)
+...--.....-+..|.+.++...+....... ..--..++-.+...+.. .|-..++.+.++. .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~---~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI---TGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence 22222223334567899999999998876531 01112222222222222 2222233333332 2
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH---H---HHHHHHHHHHHcC
Q 047648 251 VENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL---D---EAVALRDEMMASG 324 (537)
Q Consensus 251 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~ 324 (537)
.......+...|..+-. |..+|-+.. .. .|+.....++..-.-..+.. + -+.+.+-.-.+
T Consensus 705 l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 22221112223322222 222222222 11 11222212221111112111 1 11111111111
Q ss_pred CCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 325 LKPNVVTSNALINGFCK----K----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
...+..+|..++..|.+ . .+...|...+.+..+..- .+..+|+.|.-. ...|.+.-|...|-.-....+.
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 11223444444433332 1 223456666666655422 255666665544 5567777777666665554433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH--HHHchhcCCCCCHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE--MFKMEKEKKWPNIVT 474 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~ 474 (537)
...+|..+.-.+.+..+++.|...|...+... |.+...|.......-..|+.-++..+|.. ...+ +.+.-|+...
T Consensus 849 -~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~-~~gka~~f~Y 925 (1238)
T KOG1127|consen 849 -CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS-KEGKAKKFQY 925 (1238)
T ss_pred -chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc-cccccchhhH
Confidence 56677777777788888888888888777654 44455555555555566777777777766 3322 2344556666
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~ 493 (537)
|.........+|+.++-+.
T Consensus 926 w~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHHHHHHHhccchHHHHH
Confidence 6655556666666555443
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=3.2e-06 Score=72.18 Aligned_cols=119 Identities=9% Similarity=0.120 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCC--hHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL-CKDGK--SKKA 453 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 453 (537)
.++.+++...++..++.++. |...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665544 66677777777777777777777777777654 44566666666653 55555 4777
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.++++++++.. +.+..++..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD----ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776533 335566677777777777777777777777764
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=0.00041 Score=70.05 Aligned_cols=263 Identities=14% Similarity=0.225 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHH
Q 047648 60 SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAF 139 (537)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 139 (537)
..++...+..+.++...+...+..++++..+-.. +.+..+....+.|+-.-.+. +.....+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~----------------S~Fse~~nLQnLLiLtAika-d~trVm~YI 1043 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN----------------SVFSENRNLQNLLILTAIKA-DRTRVMEYI 1043 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC----------------cccccchhhhhhHHHHHhhc-ChHHHHHHH
Confidence 3455555666677777776666666666544321 11122233444444443332 334445555
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 140 KRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+++...+. | .+...+...+-+++|..+|++.. .+....+.|+.- -+.++.|.+.-++..
T Consensus 1044 ~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------ 1102 (1666)
T KOG0985|consen 1044 NRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------ 1102 (1666)
T ss_pred HHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------
Confidence 55544321 1 23344555666777777776543 244444444442 355666666555432
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS 299 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (537)
.+..|..+..+-.+ .+...+|++-|-+. -|+..|..++....+.|.+++-.+++....+..-.|... +.
T Consensus 1103 ~p~vWsqlakAQL~---~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQ---GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred ChHHHHHHHHHHHh---cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 45667777777776 66666666555332 256677777777777777777777777666654444433 45
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
++-+|++.++..+..+++ .-|+......+.+-|...+.++.|.-+|..+ .-|..|...+...|+
T Consensus 1172 Li~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHH
Confidence 667777777766655444 2356666666666666666666666655433 234555555555555
Q ss_pred hHHHHHHH
Q 047648 380 MEDAFAMR 387 (537)
Q Consensus 380 ~~~A~~~~ 387 (537)
+..|.+.-
T Consensus 1236 yQ~AVD~a 1243 (1666)
T KOG0985|consen 1236 YQGAVDAA 1243 (1666)
T ss_pred HHHHHHHh
Confidence 55555443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=1.1e-06 Score=70.92 Aligned_cols=100 Identities=9% Similarity=-0.072 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++++++. +.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHHH
Confidence 4445556666677777777776666654 4456666666667777777777777777766533 3456666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 482 FCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+...|++++|+..|++.++ +.|+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence 7777777777777777766 445443
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00025 Score=66.68 Aligned_cols=415 Identities=11% Similarity=0.060 Sum_probs=248.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
.|.|..+|..||+-+..+ .+++...++++++.. +|..+..|..-|..-.+.++++....+
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------------------FP~s~r~W~~yi~~El~skdfe~VEkL 75 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------------------FPSSPRAWKLYIERELASKDFESVEKL 75 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------------------CCCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 678888999999888666 888888888888865 366678899999999999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhC-CChhH----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCCh
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKE-GKFED----VEYVYKEMK-RRRIEL-NLDSFNFVLNG---------LCKAGKL 202 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~ 202 (537)
|.+++.. ..+...|...+.-..+. |+... ..+.|+-.. +.|+.+ +...|+..+.. |..+.++
T Consensus 76 F~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 76 FSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred HHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 9999875 34666777666644332 33332 334444433 344332 22334444432 3344566
Q ss_pred hHHHHHHHHHHhCCCCC------ChhhHHHHHHHHhc----CCCCCCHHHHHHHHHHHHH--CCCCCCHH----------
Q 047648 203 NKASDIMEDMKSLGVSP------KVVTYNILIDGYCK----KGGIGKMYKADAVFKDMVE--NGILPNEV---------- 260 (537)
Q Consensus 203 ~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~--~~~~p~~~---------- 260 (537)
+...+++++++...+.- |-..|..-|+.... ......+..|.++++++.. +|...+..
T Consensus 154 ~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e 233 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDE 233 (656)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHH
Confidence 77778888877542211 11112111111110 0013445566666666543 23221111
Q ss_pred -----HHHHHHHHHhccC------CH--HHHHHHHHHH-HhCCCCCChhhH-H----HHHHHHHhCCC-------HHHHH
Q 047648 261 -----TFNTLIDGFCKDE------NI--SAAMKVFEEM-GSHGIAAGVVTY-N----SLINGLCVDGK-------LDEAV 314 (537)
Q Consensus 261 -----~~~~l~~~~~~~g------~~--~~a~~~~~~~-~~~~~~~~~~~~-~----~l~~~~~~~~~-------~~~A~ 314 (537)
.|..+|..=-..+ .. ....-.+++. .-.+..|+.... . ..-+.+...|+ .+++.
T Consensus 234 ~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 234 IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 1333333211111 00 1111122221 112222222110 0 01122333333 34555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 315 ALRDEMMASGLKPNVVTSNALINGFCKKK---LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.+++.....-...+..+|..+...--..- ..+....+++++...-..--..+|...+..-.+..-.+.|..+|.+..
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 66665554322334444444433222222 366667777777654322234578888888888999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 392 DRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 392 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
+.+..+ ++.++++++..++ .++.+-|.++|+--.+. ...++.--...++.+...++-..++.+|++++. .+..|
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~---s~l~~ 468 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT---SVLSA 468 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh---ccCCh
Confidence 887776 6777888887765 57889999999977765 234455557788888999999999999999985 23333
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 471 --NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 471 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
....|..++.-=..-|+...+.++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 457899999988899999999999888776
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=5.2e-06 Score=73.96 Aligned_cols=189 Identities=10% Similarity=-0.032 Sum_probs=127.0
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hH
Q 047648 292 AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV---VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV--IT 366 (537)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 366 (537)
.....+..+...+...|+++.|...++++.... +.+. ..+..+..++...|++++|...++++.+..+.... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777788888999999999998887753 2222 45677788888889999999999988876443221 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 047648 367 YNTLIDAYCKE--------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 367 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
+..+..++.+. |+++.|.+.++.+.+..+. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44555555554 6778888888888776433 2223222221110 000 00 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+...+.+.|++++|+..++++++..+. .+.....+..++.++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667789999999999999999863221 1234678889999999999999999999988764
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=1.1e-05 Score=78.17 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=183.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGL 304 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (537)
..+...+.. .|-...|..+++++ ..|..++.+|...|+..+|..+..+..++ +|++..|..+.+..
T Consensus 402 ~~laell~s---lGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLS---LGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHH---cchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 345555555 67788888888764 45777888999999999999999888774 68899999888888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
....-+++|.++.+....+ .-..+.....+.+++.++.+.|+.-.+.++- ...+|-...-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 7777788999888775442 2223333344578999999999988776433 5678888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+.|..-+...+. +...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+.++.++.
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999998876444 67799999999999999999999999999987 5666788888888999999999999999999877
Q ss_pred hcCCCCCHHHHHHHHHHHHh
Q 047648 465 KEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~ 484 (537)
+... |..+...++....+
T Consensus 618 ~~~~--d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 618 KKYK--DDEVLLIIVRTVLE 635 (777)
T ss_pred hhcc--cchhhHHHHHHHHh
Confidence 6655 44455555544443
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.70 E-value=1e-05 Score=83.71 Aligned_cols=223 Identities=12% Similarity=0.106 Sum_probs=170.6
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhH
Q 047648 291 AAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVIT 366 (537)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (537)
+.+...|-.-|....+.++.++|.+++++++.. ++.. -...|.++++.-..-|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 335667777777888888889999988888764 1111 23567777777777788888889999887752 2 3457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGA 443 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 443 (537)
|..|...|.+.+.+++|.++++.|.++- .-....|...+..+.+..+-+.|..++++.++. -|. .....-.++.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 8889999999999999999999998862 236778999999999999999999999988875 233 3445556677
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcC
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ--TTYQIVREEMMEKG 521 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 521 (537)
-.+.|+.++++.+|+..+.. .+.-...|+.+++.=.++|+.+.+..+|++.+..++.|-. ..|..+++-=...|
T Consensus 1610 EFk~GDaeRGRtlfEgll~a----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 78899999999999988752 2446778999999999999999999999999998887754 45666666444445
Q ss_pred C
Q 047648 522 F 522 (537)
Q Consensus 522 ~ 522 (537)
+
T Consensus 1686 d 1686 (1710)
T KOG1070|consen 1686 D 1686 (1710)
T ss_pred c
Confidence 4
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.0003 Score=66.20 Aligned_cols=402 Identities=13% Similarity=0.153 Sum_probs=239.2
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+..+|+.||+-+..+ ..+++.+.++++... ++-+...|..-+..-.+.++++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67789999999988776 999999999999875 5667789999999999999999999999998876 3466777766
Q ss_pred HHHHHh-cCChhHHH----HHHHHH-HhCCCCC-ChhhHHHHHHHHhcCCCCCC------HHHHHHHHHHHHHCCCCC--
Q 047648 193 LNGLCK-AGKLNKAS----DIMEDM-KSLGVSP-KVVTYNILIDGYCKKGGIGK------MYKADAVFKDMVENGILP-- 257 (537)
Q Consensus 193 ~~~~~~-~g~~~~a~----~~~~~~-~~~~~~~-~~~~~~~ll~~~~~~~~~~~------~~~a~~~~~~~~~~~~~p-- 257 (537)
+..-.+ .|+...+. +.|+-. .+.|+.+ +-..|+..+.-+-.-...|. ++...++++++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654433 23333322 333332 2345433 33446666655443222344 444556666665432110
Q ss_pred ----CHHHHHHHHH-----HH--hccCCHHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhCC-
Q 047648 258 ----NEVTFNTLID-----GF--CKDENISAAMKVFEEMGS--HGIAAGVVT---------------YNSLINGLCVDG- 308 (537)
Q Consensus 258 ----~~~~~~~l~~-----~~--~~~g~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~- 308 (537)
|-.+|..-|. -+ -+...+..|.++++++.. +|+.....+ |..+|.---.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 1122211111 11 133457778888877754 232222221 333332111111
Q ss_pred -----C--HHHHHHHHHHHHH-cCCCCCHHH-H----HHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 309 -----K--LDEAVALRDEMMA-SGLKPNVVT-S----NALINGFCKKKL-------VEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 309 -----~--~~~A~~~~~~~~~-~~~~~~~~~-~----~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. -....-++++... -+..|+... + ...-+.+...|+ -+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111222222221 233333211 0 111222333444 345555555544432222334444
Q ss_pred HHHHHHHhc---CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 047648 369 TLIDAYCKE---GRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-GLVTYNILVGA 443 (537)
Q Consensus 369 ~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 443 (537)
.+...--.. .+.+....++++++.. ...| ..+|..+|+.-.+..-++.|..+|.+..+.+..+ .+.++++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 433321111 1356666777777654 2333 3468888888889999999999999999987666 67888888887
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcC
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ--TTYQIVREEMMEKG 521 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 521 (537)
|| .++.+-|.++|+--++ ....++..-...+..+...++-..|..+|++.+..++.||. .+|..+++-=..-|
T Consensus 412 ~c-skD~~~AfrIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 76 5688899999987764 23345556667788888999999999999999998777664 67888877555555
Q ss_pred CcC
Q 047648 522 FIP 524 (537)
Q Consensus 522 ~~~ 524 (537)
++.
T Consensus 487 dL~ 489 (656)
T KOG1914|consen 487 DLN 489 (656)
T ss_pred cHH
Confidence 543
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=5.3e-05 Score=73.54 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=34.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
-|+.|.+.|.+-.|...-..-.. ...|......+..++.+..-++.|-.+|+++.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 46778888887777655432222 23455666666666666666677766666654
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.68 E-value=2.9e-06 Score=68.50 Aligned_cols=122 Identities=10% Similarity=-0.072 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.++++..+. ++..+......+.+.|++++|...|+......+. +...|..+..++...|++++|...|++....+
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555543 2323555677778888888888888888877654 77888888888888888888888888888865
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+.+...+..+..++...|++++|+..|+.+++.. +.+...|.....+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~----p~~~~~~~~~~~~ 135 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS----YADASWSEIRQNA 135 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHH
Confidence 5677888888888888888888888888887643 2344555444433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=1e-05 Score=69.06 Aligned_cols=120 Identities=8% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhcCC--hHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY-CKEGR--MEDA 383 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 383 (537)
.++.+++...++...+.. +.+...|..+...|...|+++.|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555655565555543 445666666666666666666666666666665433 555555555543 45555 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.+++++..+.++. +...+..+...+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666544 55666666666666666666666666666653
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=0.0006 Score=67.43 Aligned_cols=264 Identities=10% Similarity=0.040 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhcc------CCCCchHHHHHHHHHHHHHcCCchHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCS------DSLCRNSIIIDMLMLAYVKNMKPHLGF 136 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~ 136 (537)
..+|..-..-+-..++.+.|.+.++. . ...+.++++-+.+.. ...-.++..|.=-...+-..|+.+.|+
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK---~--~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEK---A--GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHh---c--CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 34444444444455555555444432 1 123444444443321 111223344554555666678888888
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 137 EAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
.+|..+.+ |-++++..+-+|+.++|.++-++-. |......+.+.|-..|++.+|...|.+.....
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88887764 5577888888999999988876543 66677788999999999999999998764321
Q ss_pred --C--CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------H
Q 047648 217 --V--SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFE--------E 284 (537)
Q Consensus 217 --~--~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~ 284 (537)
+ -.....-..|.+.+..++ ..+...|..+|++. |.. +......|-++|.+.+|+++-= +
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~-~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSG-GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcC-chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 0 000000111222222211 23344444555442 111 2233456778888888776521 1
Q ss_pred HHhCCC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH----------cC----------------CCCCH----HHH
Q 047648 285 MGSHGI--AAGVVTYNSLINGLCVDGKLDEAVALRDEMMA----------SG----------------LKPNV----VTS 332 (537)
Q Consensus 285 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~ 332 (537)
++..++ ..|+...+.-...++...++++|..++-...+ .+ -.|+. ...
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 222222 23455555566666677777777766644322 11 12222 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDI 355 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~ 355 (537)
..+.+.|.+.|.+..|-+-|.+.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhh
Confidence 66777888888888777766553
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=3.2e-05 Score=80.25 Aligned_cols=201 Identities=14% Similarity=0.057 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP-----KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF 262 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 262 (537)
.|-..|......++.++|.++.++.+.. +.+ -...|.++++.-.. .|.-+...++|++..+.. -....|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4444455555555555555555554432 111 11233333333333 333344444444444321 012334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-PNVVTSNALINGFCK 341 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 341 (537)
..|...|.+.+.+++|.++|+.|.+.- ......|...+..+.++++-+.|..++.++++.-.+ .......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 444455555555555555555554431 123444445555555555555555555554443100 012222333333444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
.|+.+.+..+|+......++ -...|+..+++-.++|+.+.+..+|+++...++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 45555555555554443222 3344555555555555555555555555544443
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=9.6e-06 Score=69.07 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=111.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE 412 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 412 (537)
..+-..+...|+-+....+......... .+.......+....+.|++..|...+++.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 5555666666777766666666544322 2555666677777788888888888888777643 3777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
|+++.|..-|.+..+.. +.++..++.+.-.+.-.|+.+.|..++...... -.-|..+-..+..+....|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888777763 445667777777777888888888888777531 1236666777777777788888887
Q ss_pred HHHHHHH
Q 047648 493 GLLNELL 499 (537)
Q Consensus 493 ~~~~~~~ 499 (537)
.+...-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 7765544
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=8.8e-06 Score=69.30 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
+..+ ..+...+...|+-+.+..+....... .+.+....+..+....+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 55667777777777777777765543 34455566667777888888888888888777654 447778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
+|.+.|+++.|..-|.+..+.... +...++.+.-.+.- .|+.+.|..++......+.. |...-..+.......|+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L---~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLL---RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHH---cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 888888888888888887776322 34445555555555 58888888888777765432 66666777777777888
Q ss_pred HHHHHHHHHHHH
Q 047648 275 ISAAMKVFEEMG 286 (537)
Q Consensus 275 ~~~a~~~~~~~~ 286 (537)
+++|.++...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 888877765543
No 121
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=8.3e-05 Score=72.24 Aligned_cols=263 Identities=12% Similarity=0.121 Sum_probs=121.6
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 241 (537)
....++.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+ .|+++
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k---~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK---AGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc---cccHH
Confidence 334445555555554443321 1222344445555555555555555432 122334445555 45555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
.|.++-.+.. |.......|.+-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 5554443322 2222334444444444455555555554433221 11 23445555555555555544432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG------- 394 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 394 (537)
.. .-..|...+..-+...|++..|..-|-+.. -|.+-+.+|-..+.|++|.++.+.--..+
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 112344555566666777777766664432 24555666666666776666543211000
Q ss_pred -----CCCCH--H------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 395 -----VLPDV--S------TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 395 -----~~p~~--~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+.-+. . .+..-+...+..+.++-|..+-+-..+.. ...+...+...+-..|++++|-+-|-+++
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 00000 0 01111122233444444444444333322 11233344455667889999988888887
Q ss_pred Hch
Q 047648 462 KME 464 (537)
Q Consensus 462 ~~~ 464 (537)
++.
T Consensus 1023 kln 1025 (1636)
T KOG3616|consen 1023 KLN 1025 (1636)
T ss_pred hcc
Confidence 644
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=1.1e-05 Score=71.88 Aligned_cols=186 Identities=14% Similarity=0.017 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-PN-VVTS 332 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 332 (537)
.....+..+...+.+.|++++|...|+++...... | ....+..+..++...|++++|+..++++.+.... +. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35677888888999999999999999998875321 1 1246677889999999999999999999886321 11 1245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 333 NALINGFCKK--------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 333 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..+..++... |+.+.|.+.|+.+.+..+. +...+..+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 5555666554 7789999999999887443 3333322221111 0000 0 011224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+...+.+.|++++|...+++..+... +.....+..++.++.+.|++++|...++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56678889999999999999887631 2235788899999999999999999888875
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=3e-06 Score=68.09 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=77.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
++++....+. +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++.++++.
T Consensus 6 ~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 81 (135)
T TIGR02552 6 LKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-- 81 (135)
T ss_pred HHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 4444444322 33445556666667777777777777776654 4456667777777777777777777777776532
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 467 KKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+.+...+..+...+...|++++|...+++.++ +.|+...+..+..
T Consensus 82 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 --PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHH
Confidence 34566666677777777777777777777777 4466555444433
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=9.1e-05 Score=63.23 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=155.2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCC
Q 047648 159 RALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238 (537)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (537)
+-+.-.|.+..+...-....... -+...-..+-++|...|.+.....-.. .. -.|.......+...... .+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~---~~-~~~~lqAvr~~a~~~~~---e~ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIK---EG-KATPLQAVRLLAEYLEL---ES 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccc---cc-cCChHHHHHHHHHHhhC---cc
Confidence 33444566666555544433321 244444555666767776554333222 11 12233333333333333 34
Q ss_pred CHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 047648 239 KMYKADA-VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALR 317 (537)
Q Consensus 239 ~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 317 (537)
+.++.+. +.+.+.......+......-...|+..|++++|++...... +......=+.++.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 34444444333343444444567888999999988877622 3334444456677888899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 318 DEMMASGLKPNVVTSNALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
++|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.++ ..|++.+.+....++...|++++|..+++..+.+
T Consensus 161 k~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999874 356677766666654 45688999999999775 5678888888899999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 047648 394 GVLPDVSTYNCLIAGLSREGNV-EGVRNIMNELVNN 428 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 428 (537)
... ++.++..++-+-...|.. +-..+.+.+++..
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 666 777777666665556654 4455566666654
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=8.5e-08 Score=54.90 Aligned_cols=32 Identities=28% Similarity=0.728 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDM 212 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 212 (537)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=5.9e-05 Score=76.63 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 325 LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
++.+...+..|.......|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4556788888888888888888888888888876433 5556677788888888888888888888887665 7777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++.. .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~----~~~~~~~~~~~----- 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI----GDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CcchHHHHHHH-----
Confidence 8888888888888888888888743 4457888888888888888888888888887644 23334444443
Q ss_pred cCCHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELL 499 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~ 499 (537)
++...-..+++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 33344445555554
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3.1e-05 Score=78.60 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 047648 290 IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNT 369 (537)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (537)
.+.++..+..|.....+.|.+++|..+++.+.+.. +-+......+...+.+.+++++|....++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45578899999999999999999999999999853 334567788899999999999999999999998655 7778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
+..++.+.|++++|..+|+++...++. +..++..+...+...|+.++|...|++..+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 999999999999999999999985543 68899999999999999999999999999873 455566655442 2
Q ss_pred hHHHHHHHHHHHH-chhcCCCCCHHHHHHHHHHHHh
Q 047648 450 SKKAVSLLDEMFK-MEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 450 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
...-..++++.-- -...+.+..+.+...++.-|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333444444421 1122223334455555555544
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=5.3e-05 Score=70.38 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|+++.|+..++.+...-+ -|+..+....+.+.+.++.++|.+.+++++...+. .....-.+.+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 34456777777777777666533 25566666677777777777777777777775332 25555666777777777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
|+.+++...... +.|+..|..|.++|...|+..++.....+ .|...|++++|+..+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE---------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH---------------------HHHhCCCHHHHHHHHHH
Confidence 777777777654 56677777777777777777666655443 34556777777777777
Q ss_pred HHHc
Q 047648 498 LLEK 501 (537)
Q Consensus 498 ~~~~ 501 (537)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7664
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.6e-07 Score=53.76 Aligned_cols=32 Identities=41% Similarity=0.881 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 467 KKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
|+.||..+|++|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677777777777777777777777777666
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=5.7e-05 Score=77.57 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=156.5
Q ss_pred ChHHHHhhhccCCCCCCC--CCChH-----HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCch
Q 047648 8 TIEDITELIRNHHWSKLK--NTDPN-----TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYP 80 (537)
Q Consensus 8 ~~~~~~~~~~~~~w~~~~--~~~~~-----~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (537)
+.+.|..++....|.... +-+|. .-+.......++++.|...+...++. +|.....|..+...+...+++.
T Consensus 5 ~~~~~~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~ 82 (906)
T PRK14720 5 DIDKLTSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLN 82 (906)
T ss_pred hHHHHHHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchh
Confidence 567788888888998754 33322 22334555778999999999988876 4455555665666777888877
Q ss_pred HHHHH--HHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHH
Q 047648 81 KIRSF--LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLL 158 (537)
Q Consensus 81 ~a~~l--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 158 (537)
++..+ +.......+..-+.-+...+... +.+..++-.++.+|-+.|+.++|.++++++++.+ +.|..+.|.+.
T Consensus 83 ~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 83 DSNLLNLIDSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred hhhhhhhhhhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 76554 22222222222223333334332 4455677788889999999999999999998887 55788888888
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCC
Q 047648 159 RALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238 (537)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (537)
..++.. ++++|.+++.+...+ +...+++..+.++|.++....+. +...+..+.+..... .
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~--~- 217 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGH--R- 217 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhh--h-
Confidence 888888 888888888776653 55666777777777777765211 222222222222110 0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047648 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC 305 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (537)
|..--..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 ---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112233444445555666666777777666665322 4444445555544
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=0.00017 Score=74.18 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
++..+..+|-+.|+.++|..+|+++.+.. +-|+...|.+...|... ++++|.+++.+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44444444444445555555554444443 22444444444444444 4444444444443
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=0.00021 Score=66.53 Aligned_cols=200 Identities=14% Similarity=0.081 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 239 KMYKADAVFKDMVENG--ILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
++.++...-+++...+ -.|+...+...+.+......-..+-.++.+..+. .......-..-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHH
Confidence 3444444444444321 2345555555555544443333333333333331 1222233333456688999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
+..+.+.- +-|........+.+.+.++.++|.+.++++....+. .....-.+..+|.+.|++.+|..++++.....+.
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 99988862 456666777788999999999999999999987433 2666777899999999999999999999987665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..|..|.++|...|+..++..-..+ .|...|+++.|...+..+.+
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999998877765543 56678899999999988875
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.0002 Score=61.26 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK---- 376 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 376 (537)
...|+..|++++|++...... +......=...+.+..+++-|...+++|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345556666666665554411 11222222333445555566666666655431 34455555554442
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
.+.+.+|.-+|++|-++ ..|++.+.+....++...|++++|..++++..... ..++.+...++.+-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 23455555666665543 34455555555555556666666666666555543 33344444444444444443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00028 Score=59.85 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHH
Q 047648 237 IGKMYKADAVFKDMVE---NG-ILPNEV-TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLD 311 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (537)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++++...- +-+...-..-..-+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3556666666666653 23 444543 34556666777888888888888877652 222222111122344678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 312 EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
+|+++++.+++.+ +.|..++..-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8999988888875 566677776666666777777888877777776 34488888889999999999999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 047648 392 DRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNNG 429 (537)
Q Consensus 392 ~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 429 (537)
-..+. ++..+..+...+... .+.+.+.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 76544 555566666555443 35667888888888764
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00045 Score=58.68 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=131.3
Q ss_pred ccCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 271 KDENISAAMKVFEEMGSH---G-IAAGVV-TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
...+.++..+++..+... | ..++.. .|..++-+....|+.+.|..+++.+... ++-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346778888888877542 3 334432 3455566677888888888888888775 232333333333345567888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
++|.++++.+.+.++. |..++.-=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888877633 6667766666666777777888888887776 4448888888888888888888888888888
Q ss_pred HHCCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc
Q 047648 426 VNNGMRAGLVTYNILVGALCKDG---KSKKAVSLLDEMFKM 463 (537)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 463 (537)
+-.. |.++..+..+.+.+.-.| +.+.|++.|.+++++
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8764 555666666766655444 466788888888763
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=2.8e-05 Score=62.34 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
......+...+...|++++|...++.+...++. +...+..+...+...|++++|..++++..+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344555666677777777777777777765443 66677777777777777777777777776654 4456666667777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 047648 444 LCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (537)
+...|++++|.+.|+.+++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777653
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=0.0044 Score=62.27 Aligned_cols=437 Identities=14% Similarity=0.055 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 43 PVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
-..|+.-....+++.+..+...++.++.. .+.|+.++|..+++..-..+ +.+..+...+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~-------------------~~D~~tLq~l 83 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL--FRLGKGDEALKLLEALYGLK-------------------GTDDLTLQFL 83 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH--HHhcCchhHHHHHhhhccCC-------------------CCchHHHHHH
Confidence 35577777777776443333333333322 25666666666555443331 3455677777
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG-K 201 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 201 (537)
-.+|.+.|+.++|+.+|++.... -|+......+..++++.+.+.+-.++--++.+. ++-+...|=++++.+...- .
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 77788888888888888887764 355666666677777777665544444444333 2224444444555444322 2
Q ss_pred hhH---------HHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHh
Q 047648 202 LNK---------ASDIMEDMKSLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-MVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 202 ~~~---------a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~ 270 (537)
.+. |.+.++.+.+.+ .--+..-.......+.. .+.+++|++++.. ..+.-...+...-+.-+..+.
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~---~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL---QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 221 344445554432 11122222233333444 5667777777632 323222223333345566666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------------hCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC----------------VDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
..+++.+..++-.++...|. |. |...+..+. ..+..+...+...+..... ....|-+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA 310 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLA 310 (932)
T ss_pred HhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHH
Confidence 77777777777777766542 21 322222111 1111222222222222210 1112222
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHH---HHHHHH
Q 047648 335 LINGFC---KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--DVS---TYNCLI 406 (537)
Q Consensus 335 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~---~~~~l~ 406 (537)
-+.+.. .-|+.+++...|-+ +-|..| .+..=+..|...=..+.-..++.......... |.. -+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 222222 23555554433322 122121 23333333443334444455555554331110 110 122222
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHH---CC------CCCCh---------HHHHHHHHHHHhcCChH---HHHHHHHHH
Q 047648 407 AGLSREG-----NVEGVRNIMNELVN---NG------MRAGL---------VTYNILVGALCKDGKSK---KAVSLLDEM 460 (537)
Q Consensus 407 ~~~~~~~-----~~~~a~~~~~~~~~---~~------~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~ 460 (537)
..-.-.| ..+....++++... .| .-|+. -+.+.|++.+-+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 2222233 23344444433332 12 22232 23367788888888865 555566655
Q ss_pred HHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCc
Q 047648 461 FKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (537)
... .+-|..+--.+++.|.-.|-...|.++|+.+--+.+.-|...|.. .+.+...|+.
T Consensus 466 lt~----s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~ 523 (932)
T KOG2053|consen 466 LTK----SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRS 523 (932)
T ss_pred hhc----CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccc
Confidence 432 234666666788888888999999999998876666655443322 2334444443
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.0073 Score=60.77 Aligned_cols=389 Identities=13% Similarity=0.067 Sum_probs=217.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
.+..+.|+..++..-.. -++|..+...+-+.|...+++++|..+++..... .|+....
T Consensus 56 ~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--------------------~P~eell 113 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--------------------YPSEELL 113 (932)
T ss_pred hcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------------------CCcHHHH
Confidence 34556677666665443 2348888899999999999999999998887765 2346666
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-Ch---------hHHHHHHHHHHhCC-CCCCHHH
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KF---------EDVEYVYKEMKRRR-IELNLDS 188 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---------~~a~~~~~~~~~~~-~~~~~~~ 188 (537)
..+..+|++.+++.+-.+.--++-+. ++.+...+=++++...... .. .-|...++.+.+.+ .-.+..-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 77788899888876654444444332 3445555555566554432 12 23566667766654 2223333
Q ss_pred HHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH----H
Q 047648 189 FNFVLNGLCKAGKLNKASDIME-DMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF----N 263 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~ 263 (537)
.......+...|++++|.+++. ...+.-...+...-+.-+..+.. .+++.+..++-.++...|.. |-.+| .
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~---l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~ 268 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL---LNRWQELFELSSRLLEKGND-DYKIYTDSVF 268 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH---hcChHHHHHHHHHHHHhCCc-chHHHHHHHH
Confidence 3444455667899999999994 44444333444555567777777 89999999999999988643 21111 1
Q ss_pred HHHH-H--------HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCC----
Q 047648 264 TLID-G--------FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC---VDGKLDEAVALRDEMMASGLKP---- 327 (537)
Q Consensus 264 ~l~~-~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~---- 327 (537)
.++. . +...+..+...+..++..... ....|-+-+.++. .-|+.+++...|-+-.. ..|
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kpcc~~ 343 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKPCCAI 343 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCcHhHh
Confidence 1111 1 111223333333333333221 2223444444433 44777775544432211 011
Q ss_pred CHHH---------HHHHHHHH------------------------HhcC-----CHHHHHHHHHHHH---HcC------C
Q 047648 328 NVVT---------SNALINGF------------------------CKKK-----LVEKARVLFDDIS---EQG------L 360 (537)
Q Consensus 328 ~~~~---------~~~ll~~~------------------------~~~~-----~~~~a~~~~~~~~---~~~------~ 360 (537)
|... ...++..+ .-.| .-+....++.+.. ++| .
T Consensus 344 Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~l 423 (932)
T KOG2053|consen 344 DLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDL 423 (932)
T ss_pred hHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccc
Confidence 1111 11111111 1122 1223333333332 222 2
Q ss_pred CCCHh---------HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 361 SPSVI---------TYNTLIDAYCKEGRME---DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 361 ~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
-|+.. +-+.|+..+-+.++.. +|+-+++........ |..+--.+++.|+-.|-+..|.++|..+--.
T Consensus 424 l~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK 502 (932)
T KOG2053|consen 424 LPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIK 502 (932)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchH
Confidence 22222 2356778888888755 455566666655433 6667778889999999999999999988766
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..|..-|. +...+...|++..+...+.....
T Consensus 503 ~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 503 NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence 5555543332 23344555666666666665554
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=8e-05 Score=69.93 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
..|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777653 33 33446666666677777777777777653 44556666666677777
Q ss_pred CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
++++.|+++.+++++.. +-+..+|..|..+|...|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776532 3355677778888888888888877777665
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=0.00011 Score=59.67 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
..+...|++++|...|+.+......|.. .....+...+...|++++|+..++..... ......+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555554444322111 12223344444444555544444332211 1222333444444444444
Q ss_pred hHHHHHHHHH
Q 047648 450 SKKAVSLLDE 459 (537)
Q Consensus 450 ~~~A~~~~~~ 459 (537)
+++|+..|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=0.00015 Score=58.81 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNIL 440 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 440 (537)
..|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+......|+ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 48888999999999988744311 23444566778899999999999999998752232 2345567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
...+...|++++|+..++... +.......+.....+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999997642 12335667788889999999999999999875
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=0.00015 Score=68.18 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
.+...++++.|+++++++.+.. |+ ....++..+...++..+|.+++++..+..+. +...+..-...+.+.++++.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 3334444555555555554432 22 2223344444444444455554444433221 33334444444444555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
|+.+.+++.+..+. +-.+|..|..+|...|+++.|+..++.
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 55555555443222 333455555555555555555544443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=7.2e-06 Score=47.72 Aligned_cols=33 Identities=48% Similarity=1.007 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=7.9e-06 Score=47.17 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999999887
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.0002 Score=67.52 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
...+...|+++.|+..++++++..+. +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 33444556666666666666655443 45555555555666666666666666665543 33445555555566666666
Q ss_pred HHHHHHHHHHHH
Q 047648 451 KKAVSLLDEMFK 462 (537)
Q Consensus 451 ~~A~~~~~~~~~ 462 (537)
++|+..|+++++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0001 Score=64.25 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.+++++|+..|.+.++.. +.|..-|..-..+|++.|.++.|++-.+.++.++ +....+|..|..+|...|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCcHH
Confidence 44555555555555555543 3344444555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 490 DANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+|++.|++.++ +.|+..+|..=++
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 55555555555 5555555544443
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.4e-05 Score=46.41 Aligned_cols=33 Identities=33% Similarity=0.862 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00018 Score=53.26 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++...+.. +.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchhHHHHHHHHH
Confidence 334444555566666666666555542 2233455555556666666666666666655422 22334555666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047648 483 CQKGKLEDANGLLNELLE 500 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~ 500 (537)
...|++++|...+++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 666666666666666554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.7e-05 Score=45.68 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.0006 Score=53.08 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
++..++..+...|++++|...|.++..... +.....+..+..++.+.|+++.|.+.|+.+....+. .+....++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK-SPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-CCcccHHHHHH
Confidence 445566666777777777777777766421 111345556777777777777777777777653211 11124556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..++...|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77777778888888888877774
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.00026 Score=64.36 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
.+|..++...-+.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666766677777777777777764422 133444443333 22345566677777777765 35566677777777
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPN---IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
+.+.|+.+.|+.+|++++. .+.++ ...|...+..=.+.|+.+.+.++.+++.+ ..|+...+..+.+-|
T Consensus 80 l~~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 7777777777777777753 12222 24777777777777888888888877777 455555555555444
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=0.00078 Score=56.46 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666655432221 2455555566666666666666666665542 223444555555
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
++...|+...+..-++.+.. .+++|.+++++... ..|+. +..++..+...|.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~------------------------~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA------------------------LFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH------------------------HHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 55555555444433333321 15677777777776 33554 6666666666665
Q ss_pred c
Q 047648 523 I 523 (537)
Q Consensus 523 ~ 523 (537)
.
T Consensus 167 ~ 167 (172)
T PRK02603 167 S 167 (172)
T ss_pred c
Confidence 3
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.90 E-value=0.00025 Score=66.99 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR--RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
+.+......++..+....+.+++..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444455444444455555554444433 111222333455555555555555555555555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGF 269 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 269 (537)
.+|..+.+ .|++..|.++...|...+...+..|+...+.+|
T Consensus 143 ~Lmd~fl~---~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLK---KGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhh---cccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555 455555555555555444444444444433333
No 154
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.00034 Score=58.40 Aligned_cols=60 Identities=8% Similarity=-0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--DVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
..++..+...|++++|...+++.......+ ...++..+...+...|++++|+..+++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444332111 112344444444444444444444444443
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.00026 Score=66.81 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH--GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT 331 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (537)
+.+.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777777777777888888888777654 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
++.+++.+.+.|++..|.++...|..++...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766555666665555554443
No 156
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.87 E-value=0.023 Score=52.87 Aligned_cols=440 Identities=14% Similarity=0.132 Sum_probs=244.9
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCH---H-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCC
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSL---L-LTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSL 112 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 112 (537)
+..+++-..|-.+|..+.+.....+.. + .-+.+++++--. +.+.....+..+.+.-...
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s---------------- 78 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKS---------------- 78 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCc----------------
Confidence 344455677888888887653222211 1 235566666543 3444444444444331111
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC--CC------------CCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY--GL------------KSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
+....|. .-...+.+.+.+|++.+...... +. -+|...=+..+..+.+.|++.+++.+++++.
T Consensus 79 -~~l~LF~--~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 79 -AYLPLFK--ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred -hHHHHHH--HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 1112222 22356788888888887766543 11 1122333667788899999999999999887
Q ss_pred hCC----CCCCHHHHHHHHHHHHhc--------CCh-------hHHHHHHHHHHhC------CCCCChhhHHHHHHHHhc
Q 047648 179 RRR----IELNLDSFNFVLNGLCKA--------GKL-------NKASDIMEDMKSL------GVSPKVVTYNILIDGYCK 233 (537)
Q Consensus 179 ~~~----~~~~~~~~~~l~~~~~~~--------g~~-------~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~ 233 (537)
.+= ..-+..+|+.++-.+++. ... +.+.-+..+|... .+-|-......++....-
T Consensus 156 ~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 156 ERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 643 347899999866666542 111 2222223333221 123444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhCC
Q 047648 234 KGGIGKMYKADAVFKDMVENGILPNEVT-FNTLIDGFCKDENISAAMKVFEEMGSHGIA----AGVVTYNSLINGLCVDG 308 (537)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 308 (537)
.. ..+..--.++++.-...-+.|+... ...+...+.+ +.+++..+.+.+....+. .-..++..++....+.+
T Consensus 236 ~p-~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 236 VP-KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred CC-HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1222223334444334445555332 2334444444 556666655554432111 12457888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHH---HHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTS-------NALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTL---IDAY 374 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~ 374 (537)
+...|.+.+.-+..- .|+...- ..+-+..+. .-+...-..+++.+...++. ....-..| +.-+
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 999999888877653 3433211 112222221 11223334455555544333 11122223 3335
Q ss_pred HhcCC-hHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHH
Q 047648 375 CKEGR-MEDAFAMRNSMLDRGVLPDVSTYN----CLIAGLSR---EGNVEGVRNIMNELVNNGMRAGL----VTYNILVG 442 (537)
Q Consensus 375 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 442 (537)
-+.|. -++|+++++.+++-... |...-+ .+-..|.. ...+.+-..+-+-+.+.|++|-. ..-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 56666 88899999988864322 433322 23334433 34566667777777777877643 34455544
Q ss_pred --HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 443 --ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 443 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
.+...|++.++.-.-.-..+ +.|++.+|..++-++....++++|..++..+. |+..+++.=
T Consensus 469 AEyLysqgey~kc~~ys~WL~~-----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK-----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHH
Confidence 36778999998766555543 46899999999999999999999999999994 466665543
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00031 Score=51.94 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+...|++++|...++++.+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666677777777777777665332 34556666666777777777777777766653 3344566667777777
Q ss_pred cCChHHHHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~ 462 (537)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776653
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.87 E-value=0.0042 Score=49.59 Aligned_cols=92 Identities=4% Similarity=-0.141 Sum_probs=62.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.+..-+...|++++|..+|+.+....+. +..-|..|.-++...|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3444556677777777777777665544 55566666767777777777777777776665 455666666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMFK 462 (537)
Q Consensus 449 ~~~~A~~~~~~~~~ 462 (537)
+.+.|++.|+.++.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776665
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0036 Score=50.67 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+..+..+.=+.+...+-..+-. ...|+...-..|..+....|++.+|...|++...--..-|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3344444445554443333222 24566666777888888888888888888888765555577778888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
+..|...++.+.+.... -++.....+...+...|.+..|...|+.++. ..|+...--.....+.++|+.+++..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-----~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-----YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-----hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 88888888888776310 1234455677788888888888888888864 35666665566666777887776655
Q ss_pred HHHHHH
Q 047648 494 LLNELL 499 (537)
Q Consensus 494 ~~~~~~ 499 (537)
-+....
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 444443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0015 Score=64.46 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 047648 360 LSPSVITYNTLIDAYCKE-----GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--------GNVEGVRNIMNELV 426 (537)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 426 (537)
.+.+...|...+++.... +....|..+|++.++..+. ....|..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344566666666654322 2255677777777765433 334444433333221 11233344444433
Q ss_pred HC-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 427 NN-GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 427 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.. ..+.+...|..+.-.....|++++|...+++++++. |+...|..+...+...|++++|.+.+++... +.|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-----MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 32 123445677777666667788888888888887643 5777888888888888888888888888877 556
Q ss_pred CHHhHH
Q 047648 506 NQTTYQ 511 (537)
Q Consensus 506 ~~~~~~ 511 (537)
...||.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 655554
No 161
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.008 Score=51.58 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH-----HHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY-----NIL 440 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 440 (537)
+.+.++.++.-.|.+.-....+.++++...+-++.....+++.-.+.|+.+.|..+|++..+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344455555556666666666666666555556666666666666666666666666655543222222222 222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 511 (537)
...|.-++++..|...+.+++.++ +.|+...|.-.-++.-.|+..+|++.++.|++ ..|.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 233445556666666666665533 22444444444444445666667776666666 334444433
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00078 Score=56.23 Aligned_cols=140 Identities=11% Similarity=-0.012 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHHH
Q 047648 380 MEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 380 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
+..+...+..+.+. +..-....|..+...+...|++++|...|++.......+ ...++..+..++...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444455322 222235567788888889999999999999998763222 235788999999999999999999
Q ss_pred HHHHHHchhcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCc
Q 047648 457 LDEMFKMEKEKKWPNIVTYNVLIKGFC-------QKGKLEDANGLLNELLEK---GLIPNQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~ 523 (537)
+++++++. +....++..+...+. ..|++++|...+++.... .+..++.....+...+...|.+
T Consensus 95 ~~~Al~~~----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 95 YFQALERN----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHhC----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 99998743 234556666666666 788888666666554321 1223333334444445555543
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0016 Score=57.35 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKM 463 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 463 (537)
++.-+..++. |...|..|...|...|+.+.|..-|.+..+.. ++++..+..+..++....+ ..++.++|++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3334444555 78888888888888888888888888888864 5667777777776654432 56788888888864
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+ +-|+.+...|...+...|++.+|...|+.|++. -|....+..+++
T Consensus 223 D----~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D----PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 4 346777778888888899999999999999884 354444544443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=8e-05 Score=53.77 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 412 EGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.. +.+....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----CCCHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777765321 1334444567777777777777777766 2211 1233444455677777777777
Q ss_pred HHHHHHH
Q 047648 491 ANGLLNE 497 (537)
Q Consensus 491 A~~~~~~ 497 (537)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777765
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.0012 Score=51.39 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~ 460 (537)
..++.+.|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 33333333333333333333
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=5.8e-05 Score=54.52 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 378 GRMEDAFAMRNSMLDRGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..++++ .+.+ +.+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544321 1333333455555555555555555555 2111 11223333345555555555555555
Q ss_pred HHH
Q 047648 457 LDE 459 (537)
Q Consensus 457 ~~~ 459 (537)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.0026 Score=50.76 Aligned_cols=98 Identities=8% Similarity=-0.049 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
....-.+...+...|++++|.++|+.+...+ +-+..-|-.|.-++-..|++++|+..|..+..+. +.|+..+-.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 3445556666788999999999999999876 5667788899999999999999999999998755 3577888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00042 Score=51.00 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGL-KSSVLSCNQLLRALVKEG--------KFEDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
.-|..+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|..|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777665542 12334555555555555555555555
Q ss_pred HHHHH
Q 047648 192 VLNGL 196 (537)
Q Consensus 192 l~~~~ 196 (537)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55544
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.032 Score=51.34 Aligned_cols=265 Identities=11% Similarity=-0.010 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.....+.+..++.+|+..+..+++.. +.++..|..-+..+...|+++++.--.+.-.+.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34567788889999999999999875 345667777777788888888887766655443211 1223333334444444
Q ss_pred ChhHHHHHHHH------------HH---hCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 201 KLNKASDIMED------------MK---SLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 201 ~~~~a~~~~~~------------~~---~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
+..+|.+.++. .. ... -+|.-.+|..+-.-|.-. .+++++|.++--..++..-. +......
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~--~~~~~~a~~ea~~ilkld~~-n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF--LGDYDEAQSEAIDILKLDAT-NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh--cccchhHHHHHHHHHhcccc-hhHHHHh
Confidence 44444444331 11 110 012223333333222221 57777777666555554211 2222222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCChhh-------------HHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGIAAGVVT-------------YNSLINGLCVDGKLDEAVALRDEMMASG---LKPN 328 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 328 (537)
-..++.-.++.+.+...|++....+ |+-.. +..-.+-..+.|++..|.+.|.+.+... ..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 2233445677888888888776643 32211 1112234556777888888888777642 3344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
...|........+.|+..+|+.--+...+.+.. -...|-.-..++.-.++|++|.+-++...+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666667777777777777666654110 0112222233455567777777777776654
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00056 Score=59.80 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.-+.+.+++.+|+..|.+.++..+. |++.|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4467788999999999998887544 7777888888999999999999888888876443 4568889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
+|++.|++.++. .|+-.+|-
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHH
Confidence 999999888875 46655553
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.00042 Score=50.99 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 155 NQLLRALVKEGKFEDVEYVYKEMKRRRI-ELNLDSFNFVLNGLCKAG--------KLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
..-|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445566666888888888888888888 888888888888776643 2335566777777777777777777
Q ss_pred HHHHHHhc
Q 047648 226 ILIDGYCK 233 (537)
Q Consensus 226 ~ll~~~~~ 233 (537)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776655
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.73 E-value=0.0015 Score=61.73 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (537)
...+...|+++.|...|.++.+.... +...|..+..+|...|++++|+..++++++..+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 34445556666666666666665433 4555666666666666666666666666665433 555666666666666666
Q ss_pred HHHHHHHHHHHHC
Q 047648 416 EGVRNIMNELVNN 428 (537)
Q Consensus 416 ~~a~~~~~~~~~~ 428 (537)
++|+..|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666664
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.016 Score=51.35 Aligned_cols=58 Identities=9% Similarity=-0.046 Sum_probs=29.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH---HHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC---NQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
....+...|++++|++.|+.+....+. +.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445566666666666666554211 22221 23344555556666666666655554
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.68 E-value=0.003 Score=52.94 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888889999999999999999987644332 467888999999999999999999999987544 56777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+...|+...+..-++.... .+++|.++++++.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 8888888887666654443322 25677777777764
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.019 Score=50.87 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV-VT---SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNT 369 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (537)
...+-.....+...|++++|.+.|+++...- |+. .. .-.++.++.+.++++.|...+++..+..+.....-+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333344555667788888888888887752 322 22 23456677778888888888888777644433333433
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 370 LIDAYCK--EG---------------R---MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 370 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.+.+.+. .+ + ...|+..|+++++. |-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3433331 11 1 12233333333332 22223334444433333321
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
. ...--.+...|.+.|.+..|..-++.+++- -.+.+........++.+|...|..++|..+...+.
T Consensus 174 --l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011124556688888888888888888752 22233345666777788888888888887776654
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=7.8e-05 Score=41.78 Aligned_cols=30 Identities=43% Similarity=0.948 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577888888888888888888888877663
No 177
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0069 Score=55.47 Aligned_cols=158 Identities=13% Similarity=0.027 Sum_probs=84.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-------------H
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-------------N 368 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 368 (537)
.++...|++++|.+.-...++.. ..+......-..++.-.++.+.+...|++....++ +...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHH
Confidence 45566777777777766666532 11222211112233345677777777777766532 22111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+...+.+ +.-...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1112234566677777777766643 334455556555566666677777776666665532 111223333344555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 047648 446 KDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~ 463 (537)
..+++++|++-|+++.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566666666666666653
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00032 Score=48.33 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG-KLEDANGLLNELLE 500 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 500 (537)
+..+|..+...+...|++++|+..|+++++.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777643 335667777777777777 57777777777766
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.015 Score=53.20 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS-----VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
..|......|-..|++++|.+.|.+..+.....+ ...|......+.+ .++++|.+. |..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~---------------~~~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIEC---------------YEK 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHH---------------HHH
Confidence 5666777888888888888888887754311100 1112222222211 133333333 334
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGI-GKMYKADAVFKDMVEN----GIL-PNEVTFNTL 265 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l 265 (537)
.+..|...|++..|-+.+..+-+ .|.. . +++++|++.|++..+. |.+ --..++..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~---~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEE---QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCC---TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHH---HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 44566677777776666655443 3444 4 6777777777665431 210 012345566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-----Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC--HHHHHHH
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAA-----GVV-TYNSLINGLCVDGKLDEAVALRDEMMASG--LKPN--VVTSNAL 335 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 335 (537)
...+.+.|++++|.++|+++....... +.. .+...+-++...|++..|.+.+++..... +..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 667777777777777777765542211 111 22233445556677777777777766432 1111 2334445
Q ss_pred HHHHHhc--CCHHHHHHHHHHHH
Q 047648 336 INGFCKK--KLVEKARVLFDDIS 356 (537)
Q Consensus 336 l~~~~~~--~~~~~a~~~~~~~~ 356 (537)
+.++-.. ..++.+..-|+.+.
T Consensus 242 ~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHhCCHHHHHHHHHHHcccC
Confidence 5554432 23444444444443
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0018 Score=58.94 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK-KKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
.+|..+++..-+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776442 2334445444444233 45566677777777665 33366667777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDV---STYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+...++.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777765 22222 36777777777777777777777777764
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0074 Score=46.37 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+.. .-+......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHH
Confidence 344455555555555555555543332 2334444555555555555555555554310000 0011222223334555
Q ss_pred cCCHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELL 499 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~ 499 (537)
.|++++|+..+-..+
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554443
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.009 Score=59.12 Aligned_cols=136 Identities=11% Similarity=0.078 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--------ChHHHHHHHHHHHh
Q 047648 326 KPNVVTSNALINGFCKK-----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG--------RMEDAFAMRNSMLD 392 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 392 (537)
+.+...|...+.+.... ++...|..+|++..+..+. ....|..+..++.... +...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45556666666654322 2356777777777776433 3444544444333211 22334444444333
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 393 R-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 393 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
. ....++..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|++++|.+.++++..++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 123356777777766777899999999999998875 678888999999999999999999999988754
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.56 E-value=0.00013 Score=40.90 Aligned_cols=26 Identities=50% Similarity=0.848 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.0004 Score=47.15 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+...+...|++++|++.|+++++.. +-+...+..+..++...|++++|...|+++++ ..|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4456777778888888888776422 33677777777888888888888888888776 34543
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00049 Score=47.25 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=42.3
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
.+.|++++|++.|+++.+.. +-+...+..++.+|.+.|++++|..+++++.. ..|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 45677777777777776532 33666777777777777777777777777777 346655554443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.0087 Score=45.97 Aligned_cols=91 Identities=22% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHH
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA---GLVTYNILVGAL 444 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 444 (537)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... +. +......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45556677777777777777777765533 2345556667777777888877777777642 11 222233344566
Q ss_pred HhcCChHHHHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~ 461 (537)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788888777776654
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.49 E-value=0.0036 Score=52.44 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 047648 149 SSVLSCNQLLRALVKE-----GKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVT 223 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 223 (537)
.+..+|..+++.+.+. |..+-....+..|.+-|+.-|..+|+.|++++=+ |.+- -..+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~--------------- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF--------------- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH---------------
Confidence 3555555555555433 3444455555555555555555555555555432 1111 0011
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 224 YNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 224 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
+..+..-| ..+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~hy-----p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY-----PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC-----cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 33445678888888888888888888888888876664
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.017 Score=51.18 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCC
Q 047648 356 SEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNNGMRA 432 (537)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~ 432 (537)
...++. |...|..|..+|...|+++.|..-|.+..+...+ ++..+..+..++... ....++..+|+++++.+ +.
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PA 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Cc
Confidence 334443 7778888888888888888888888888776433 666666666655433 34567888888888875 56
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++.+...|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6777778888888888888888888888763
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0094 Score=54.48 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----Ch
Q 047648 367 YNTLIDAYCKE-GRMEDAFAMRNSMLDR----GVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-----GL 434 (537)
Q Consensus 367 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 434 (537)
+..+...|... |+++.|++.|++..+. + .+. ..++..+...+.+.|++++|.++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34455556666 7788888887776543 2 111 2355666777888888888888888877653221 12
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 047648 435 -VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIVTYNVLIKGFCQ--KGKLEDANGLLNELL 499 (537)
Q Consensus 435 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 499 (537)
..+...+-++...||+-.|.+.+++.....+ ++. ........|+.++-. ...+++++.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~-~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP-SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST-TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1233344466677888888888888764321 121 123445556666643 234556666555553
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.15 Score=50.35 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHH----------HHHhCCChhHHHHHHHHHHhCCC
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLR----------ALVKEGKFEDVEYVYKEMKRRRI 182 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~ 182 (537)
.|.+..|..+...-+..-.++-|...|-+.... +.......|-. .-.--|++++|.++|-.+-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 566788888887777777777777777665543 12111111111 12224889999999888776632
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047648 183 ELNLDSFNFVLNGLCKAGKLNKASDIME 210 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 210 (537)
.+..+.+.|++-.+.++++
T Consensus 766 ---------Aielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHH
Confidence 3455556666655555543
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.0009 Score=46.06 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG-KSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 462 (537)
++.+|..+...+...|++++|+..|.+.++.+ +.+...|..+..+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777664 445666777777777777 57777777777665
No 192
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.39 E-value=0.095 Score=48.87 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQG---LSPSVITYNTLIDAYCK---EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
.++-+|....+++...++++.+...- +.-...+--..+-++.+ .|+.++|+.++..++.....+++.+|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444555555555555555554430 11111122223334444 5666666666666444444455566665555
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChH----HHHHHH---HHHH-HchhcCCCC
Q 047648 408 GLSR---------EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSK----KAVSLL---DEMF-KMEKEKKWP 470 (537)
Q Consensus 408 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-~~~~~~~~~ 470 (537)
.|-. ....++|+..|.+.-+. .|+...=..++..+...|... +..++- .... +.+......
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 12256677777766654 244433333333333344321 122221 1111 111111233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+.-.+.+++.++.-.|++++|.+..++|.+. .|...-..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W~l~S 343 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAWELES 343 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcchhHHH
Confidence 5555678888888899999999999999874 455433333
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.0072 Score=49.03 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTT 509 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 509 (537)
.+...++..+...|++++|..+.+.++... +-|...|..++.+|...|+..+|+++|+++.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d----P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD----PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345667778889999999999999998754 45888999999999999999999999998754 599998877
Q ss_pred HHHH
Q 047648 510 YQIV 513 (537)
Q Consensus 510 ~~~l 513 (537)
-...
T Consensus 139 ~~l~ 142 (146)
T PF03704_consen 139 RALY 142 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 194
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0027 Score=53.15 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH
Q 047648 220 KVVTYNILIDGYCKK--GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTY 297 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 297 (537)
+-.+|..++..|.+. ...|..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+=.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 555555555555542 2245555555566666666666666666666665543 2211 0111111100
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
- --.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 114 -----h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -----H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -----c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 01123445556666666666666666666666555544
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.37 E-value=0.026 Score=48.67 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLK--SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
-.....+...|++.+|++.|+.+....+. -...+.-.++.++.+.|+++.|...++.+.+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677788888888888888765221 12234556667777888888888888877665
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0026 Score=58.00 Aligned_cols=133 Identities=14% Similarity=0.006 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISE----QGLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD----RG-VLPDV 399 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~ 399 (537)
..|..+.+.|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.++.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555666667788888777654322 1211 1234567778888888888888887766432 22 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN-----GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..+|...|.-..++++|+.++.+-+.. +..-....+-+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55667777887778888888887765432 1122356777888888888888888888777665
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.042 Score=53.95 Aligned_cols=177 Identities=12% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC
Q 047648 183 ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL-GVSP--------KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN 253 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 253 (537)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.+++-+|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~-----~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF-----YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh-----hcchhHhhhhhhccchh
Confidence 355666666666655555666666655544321 1110 001111112222 46677777776665543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH-GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
+ ..+..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. .
T Consensus 764 D---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred h---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 1 2344555566665555554321100 0000124556666666666666666666654321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
...++++.+..++++.+.+...+.+ +....-.+.+++.+.|.-++|.+.+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1234444444444444433333222 3334445555566666655555544
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.073 Score=45.89 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGL--KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
..+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...++...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666555310 111233344455555666666666666665554
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.0021 Score=44.79 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
..|.+.+++++|+++++.++.+. +.++..|.....++...|++++|.+.+++.++ ..|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 45677777888888888777643 33666777777778888888888888888877 44665554433
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00095 Score=45.79 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=24.8
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
..|++++|++.|+.+.... |.+...+..+..++.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555554442 224444444555555555555555555554444
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.015 Score=51.91 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.|...+....+.|++++|...|+.+++.. |+ ...+-.+..+|...|++++|...|+.+++..+. .+.....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhHHHH
Confidence 34444444455567777777777776653 22 245666777777777777777777777652211 122344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
.++..+...|++++|..+|+++++ ..|+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 566667777777777777777777 3355443
No 202
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.0019 Score=43.75 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=23.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+...|++++|...|+++++.. +-+...+..+..++...|++++|...|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444432 2233444444444444444444444444444
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.22 E-value=0.084 Score=43.08 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=121.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
..+..+..+.=+++...+-..+-.. ..|+...-..+..+....|+..+|...|++...--...|....-.+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 3444555555566665544444333 46888888889999999999999999999987655556888888899999999
Q ss_pred CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 378 GRMEDAFAMRNSMLDRG---VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
+++..|...++++-+.+ -.|| +...+.+.+...|...+|..-|+..... -|+..........+.+.|+.+++.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999988764 2344 4456778899999999999999999886 577777777778889999888777
Q ss_pred HHHHHHH
Q 047648 455 SLLDEMF 461 (537)
Q Consensus 455 ~~~~~~~ 461 (537)
.-+.++.
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 6665554
No 204
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.18 E-value=0.21 Score=46.80 Aligned_cols=391 Identities=13% Similarity=0.089 Sum_probs=218.5
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.|..+|-.|+..|..+|.+++-.+++++|..- ++-=..+|..-+.+-...+++..+..+|.+.+.... +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 677899999999999999999999999999753 333456787778877778899999999999887744 45566666
Q ss_pred HHHHHhcCChh------HHHHHHHHHHh-CCCCCC-hhhHHHHHHHHhcCCCCCCHH------HHHHHHHHHHHCCCCCC
Q 047648 193 LNGLCKAGKLN------KASDIMEDMKS-LGVSPK-VVTYNILIDGYCKKGGIGKMY------KADAVFKDMVENGILPN 258 (537)
Q Consensus 193 ~~~~~~~g~~~------~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~~~~~~~~~------~a~~~~~~~~~~~~~p~ 258 (537)
+..-.+.+..- .-.+.|+-... .++.|- ...|+..+..+-.-...+.++ .....+.++..-.+..=
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 65444433211 11222332222 233332 233444333322211123322 22233333332111000
Q ss_pred HHHH------HHHH-----HHHhc--cCCHHHHHHHHHHHH------------------------------------hCC
Q 047648 259 EVTF------NTLI-----DGFCK--DENISAAMKVFEEMG------------------------------------SHG 289 (537)
Q Consensus 259 ~~~~------~~l~-----~~~~~--~g~~~~a~~~~~~~~------------------------------------~~~ 289 (537)
...| ..=+ +-+.. .--+..|...++++. +.+
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 0000 0000 00000 000111222222211 111
Q ss_pred CC----------------------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 290 IA----------------------AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 290 ~~----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
+. .....|---...+...++-+.|+......... .|. .-..+...|.-..+-+.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~ 351 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEA 351 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHH
Confidence 10 11112222223445667777787776554332 232 11112222333333333
Q ss_pred HHHHHHHHHH--------------cCC---------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 047648 348 ARVLFDDISE--------------QGL---------------SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG-VLP 397 (537)
Q Consensus 348 a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p 397 (537)
....|+...+ .+. ..-..+|...+....+..-.+.|..+|-+..+.+ +.+
T Consensus 352 v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h 431 (660)
T COG5107 352 VYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH 431 (660)
T ss_pred HhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 3332222210 001 0123456667777778888999999999999888 567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC--HHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN--IVTY 475 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~ 475 (537)
+...+++++..++ .|+...|..+|+.-...- +.+..--.-.+..+..-++-+.|..+|+..++. +..+ ...|
T Consensus 432 ~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r----~~~~q~k~iy 505 (660)
T COG5107 432 HVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALFETSVER----LEKTQLKRIY 505 (660)
T ss_pred ceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH----HHHhhhhHHH
Confidence 7888899888765 578889999998766652 233333356677788889999999999977641 1222 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
..++.--..-|+...+..+-++|.+ +.|...+.......|.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 8999888889999999999999988 6676655555544443
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.0023 Score=45.28 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW---PN-IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+++.+...|...|++++|++.|++++++. .... |+ ..++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788888888888888888888888752 2222 22 55778888889999999999999888765
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.14 Score=44.25 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=27.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
++..+.-.+.+.-....+.++.+...+.++...+.+.+.-.+.|+.+.|...|++..
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444455555555555544333444444555555555555555555555443
No 207
>PRK15331 chaperone protein SicA; Provisional
Probab=97.07 E-value=0.07 Score=43.00 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=47.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|..+|+-+.-.++. +..-|..|..++...+++++|+..|......+ ..|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 33556666666666655554433 44445555555555666666666665554443 23333344455566666666666
Q ss_pred HHHHHHHHH
Q 047648 454 VSLLDEMFK 462 (537)
Q Consensus 454 ~~~~~~~~~ 462 (537)
+..|+.+++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665543
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.35 Score=45.45 Aligned_cols=404 Identities=12% Similarity=0.093 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhCCChhHHHHHHHHHHhC--CCC----------
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLR--ALVKEGKFEDVEYVYKEMKRR--RIE---------- 183 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~--~~~---------- 183 (537)
.-+-++++|..++ .+.....+....+. .| ...|-.+.. .+.+.+.+.+|.+.+..-..+ +..
T Consensus 48 l~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 3345777776543 33333333333332 22 233444444 345788999999888776554 211
Q ss_pred --CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChhhHHHHHHHHhcCC------------CCCCHHHHHH
Q 047648 184 --LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG----VSPKVVTYNILIDGYCKKG------------GIGKMYKADA 245 (537)
Q Consensus 184 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~------------~~~~~~~a~~ 245 (537)
+|...=+..+.++...|++.++..+++++...= ..-+..+|+.++-.+.++- -.+-++.+.-
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 122223567788999999999999999887643 3468888888666665410 0111222333
Q ss_pred HHHHHHHC------CCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhCCCHHHHHHH
Q 047648 246 VFKDMVEN------GILPNEVTFNTLIDGFCKD--ENISAAMKVFEEMGSHGIAAGVVT-YNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 246 ~~~~~~~~------~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~ 316 (537)
..+++... .+.|.......++....-. .+..--++++......-+.|+-.. ...+...+.. +.+++..+
T Consensus 204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 33333321 1233333334444332211 222233334444444334444222 2223333322 45555555
Q ss_pred HHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-------HHHHHHHHh----cCChH
Q 047648 317 RDEMMASGLK----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-------NTLIDAYCK----EGRME 381 (537)
Q Consensus 317 ~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~ 381 (537)
-+.+....+. .-..++..++....+.++...|...+.-+.-.. |+...- ..+.+..+. .-+..
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 4444333211 124567788888888898888888887776543 222211 122222221 11233
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHH----HHHHHhcCChHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIA---GLSREGN-VEGVRNIMNELVNNGMRAGLVTYNIL----VGALCKDGKSKKA 453 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A 453 (537)
.-+.+|+.....++. ....-..++. -+.+.|. -++|+.+++.+.+-. +-|...-|.+ -.+|...=..+.-
T Consensus 360 ~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 360 DYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 445566666655433 2222233332 2344555 788999999888752 3343333322 2333332222222
Q ss_pred HHHHHHHHHchhcCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCcc
Q 047648 454 VSLLDEMFKMEKEKKWP----NIVTYNVLIKG--FCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
-+++.-+.-+...|++| +...-|.|..| +...|++.++.-.-..+.+ +.|+..+|+.+.-.+.....+.+|-
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 22222222223556665 34455555544 5678999999988888887 8899999999999998888888887
Q ss_pred CCCCcc
Q 047648 528 GHMYNI 533 (537)
Q Consensus 528 ~~l~~~ 533 (537)
+++.++
T Consensus 516 ~~l~~L 521 (549)
T PF07079_consen 516 EYLQKL 521 (549)
T ss_pred HHHHhC
Confidence 776554
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.018 Score=52.77 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLD----RGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GM-RAGLV 435 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 435 (537)
.|..|...|.-.|+++.|+...+.-++ -|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666677889998876654322 1211 13456778888999999999999998876532 21 22344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKE--KKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..-+|...|.-..++++|+.++.+-+.+... ...-....+-+|..+|...|..+.|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567888888888999999998876542211 11123456778889999999999999888776653
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.028 Score=50.25 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL--PDVSTYNCLIA 407 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~ 407 (537)
|...+..+.+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+.+.-+. .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554432211 123344555555555555555555555543111 11223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 047648 408 GLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+...|+.++|..+|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555554443
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=96.87 E-value=0.11 Score=41.95 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=79.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
...-+...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|+..|..+..+... |+..+-....+|..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~----dp~p~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN----DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC----CCCccchHHHHHHH
Confidence 3344567999999999999998876 456777888999999999999999999998876544 33335567889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 485 KGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
.|+.+.|...|+..++ .|.......
T Consensus 118 l~~~~~A~~~f~~a~~---~~~~~~l~~ 142 (165)
T PRK15331 118 MRKAAKARQCFELVNE---RTEDESLRA 142 (165)
T ss_pred hCCHHHHHHHHHHHHh---CcchHHHHH
Confidence 9999999999999998 355444433
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.86 E-value=0.11 Score=42.04 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
...++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+...|.++|+++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555566666666666666555433 55556666666666666666666655554
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.80 E-value=0.43 Score=44.16 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
.+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++... +-++.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555544433331 24555555555555555555555543321 1123445555555555555
Q ss_pred hHHHHHHHHH
Q 047648 450 SKKAVSLLDE 459 (537)
Q Consensus 450 ~~~A~~~~~~ 459 (537)
..+|..++.+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.61 Score=45.86 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+..+...+...+-+...+.-|-++|.+|-+. ..+++.....++|++|..+.+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3445555555566677777888888777432 3466777888888888888776554
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.45 Score=44.02 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
.+.+.-+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-.++... + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHH
Confidence 34555566777888888887776554 2 36888899999999999999987776432 1 1456788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
.+.|+..+|..+..++ + +..-+..|.++|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888772 1 245678899999999988765443
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.74 E-value=0.0079 Score=41.82 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.|.+.+++++|.+++++++..+ |.++..+.....++.+.|++++|.+.|+.+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555543 33445555555555555555555555555554
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.79 Score=45.99 Aligned_cols=322 Identities=11% Similarity=0.092 Sum_probs=153.2
Q ss_pred hCCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC
Q 047648 179 RRRIELNLDSFN-----FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN 253 (537)
Q Consensus 179 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 253 (537)
+.|++.+..-|. .++.-+...+.+..|+++-..+...-.. +...|.....-+.+..+..+-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA- 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-
Confidence 346666666654 3566677788888888887776532111 256677777777664333333333333333322
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA----AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV 329 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 329 (537)
... ....|..+......+|+++-|..+++.-...+.. .+..-+...+.-+...|+.+-...++-.+... .+.
T Consensus 503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 222 4456777888788889999988887644332211 12223344445555666666655555555432 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH-HHHHH----hCCCCCCHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAM-RNSML----DRGVLPDVSTYNC 404 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~----~~~~~p~~~~~~~ 404 (537)
..+. ....+..-|..+|.+..++. +..+ +-..|.+..+...+-.+ ++... ..+..|+. ..
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 1111 11122333444444443321 1100 11111111111111111 11100 01122222 22
Q ss_pred HHHHHHhcCCH----------HHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 405 LIAGLSREGNV----------EGVRNIMNELVNN-GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 405 l~~~~~~~~~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
....+++.... .+-+++.+.+... |......+.+--+.-+..-|+..+|.++-.+.. -||-.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr 716 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKR 716 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------Ccchh
Confidence 22333332221 1111222222211 222233344445555666666666666655552 46666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
.|-.-+.+++..++|++-.++-+.+. .+.-|.-.+.+|.+.|+.++|..|.+.+.
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 66666667777777766655544442 13345556666777777777766666543
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.1 Score=50.96 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHH---------HHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH
Q 047648 189 FNFVLNGLCKAGKLNKASDI---------MEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE 259 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 259 (537)
+.+-+..|...|.+++|.++ ++.+... ..+.-.++..=.+|.+..+ -.+-+.+.-++++.++|-.|+.
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd-l~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD-LRYLELISELEERKKRGETPND 635 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHHhcCCCchH
Confidence 44445566777777776654 2222111 1133344555556665221 2233444556667777776775
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEM 285 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 285 (537)
.. +...++-.|.+.+|-++|.+-
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHc
Confidence 43 334455567777777777553
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.6 Score=43.73 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
.|+.++|++++..+......+++.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45555555555554333334444444444433
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=1.1 Score=45.77 Aligned_cols=182 Identities=11% Similarity=0.122 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 65 LTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
....-+..+.+...++-|..+.+.-- .++..+ ......-...+.+.|++++|...|-+.+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~--------------~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTL--------------AEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHH--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 35556777777777777777655311 111111 12233445677889999999999988775
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
. +.|+ .++.-+....+..+--..++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-.
T Consensus 397 ~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~ 466 (933)
T KOG2114|consen 397 F-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDV 466 (933)
T ss_pred c-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeH
Confidence 3 2322 3566666677777778888888888876 66667889999999999988777766544 2211 1123
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
...+..+.+ .+-.++|.-+-..... +......+ +-..+++++|++.+..+.
T Consensus 467 e~al~Ilr~---snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 467 ETALEILRK---SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHH---hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 445555555 5556665554443322 22333333 334577888888776653
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.0078 Score=42.53 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN----GM-RAG-LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666666677777777777777666543 11 121 45667777778888888888888877765
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.48 E-value=0.045 Score=51.74 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+...++.+..+|...|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788888889999999999999999988864 443 3588888999999999999999999876
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.44 E-value=0.75 Score=42.47 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=64.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-CChHHHHHHHHHHHhcC
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN-GMR-AGLVTYNILVGALCKDG 448 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g 448 (537)
..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .+..-+++..+. .++ .+......+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 45566777777777777777665444432 21 112233333 333333333221 122 33455556666666777
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ-KGKLEDANGLLNELLEK 501 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 501 (537)
++..|+.--+.+.+ ..|....|..|...-.. .|+-.++...+-+.++.
T Consensus 344 e~~~ARa~Aeaa~r-----~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAAR-----EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhh-----hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777666665543 24555666666655433 47777777777666654
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.06 Score=41.00 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
+.+..|+++.|++.|.+.+.. .+.....||.-.+++.-.|+.++|++-+++++++.......--..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666654 2445566666666666666666666666666654322111122233333444555666
Q ss_pred HHHHHHHHHHHHHcC
Q 047648 488 LEDANGLLNELLEKG 502 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g 502 (537)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655544
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.29 E-value=0.92 Score=41.92 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=53.4
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLS--CNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
++-.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.|...-+.....-. .-...+..++...+..|+
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCC
Confidence 3444567888888888888752 22221 22233333456777777766666555422 245566777777777788
Q ss_pred hhHHHHHHHHHHhC
Q 047648 202 LNKASDIMEDMKSL 215 (537)
Q Consensus 202 ~~~a~~~~~~~~~~ 215 (537)
++.|+++++.-.+.
T Consensus 204 Wd~AlkLvd~~~~~ 217 (531)
T COG3898 204 WDGALKLVDAQRAA 217 (531)
T ss_pred hHHHHHHHHHHHHH
Confidence 88887777766543
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.29 E-value=0.12 Score=40.11 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
|..++..++.++++.|+.+....+++..-..+ ++... ..+. . .......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~----------~--~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD----------Y--PPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc----------c--CCCCCCCCCHHHHHH
Confidence 45677788888888888888887776655332 11100 0000 0 012334566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHh
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEK-GLIPNQTTYQIVREEMME 519 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~ 519 (537)
++.+|+..|++..|+++++...+. +++.+..+|..+++-...
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666665542 455555666666654443
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.25 E-value=0.89 Score=41.43 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 223 TYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302 (537)
Q Consensus 223 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (537)
+...++.+|...+.....++|..+++.+.... +-....+..-+..+.+.++.+.+.+.+..|...- ......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 45666677776554555666777777665432 2134455555666666777777777777777652 212333444443
Q ss_pred HH---HhCCCHHHHHHHHHHHHHcCCCC
Q 047648 303 GL---CVDGKLDEAVALRDEMMASGLKP 327 (537)
Q Consensus 303 ~~---~~~~~~~~A~~~~~~~~~~~~~~ 327 (537)
.+ .. .....|...+..+....+.|
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 33 22 22344445555444433333
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.8 Score=40.78 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=86.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.....|++.+|...|......... +...--.++.+|...|+.+.|..++..+-..-..........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777787877777766443 3445556777888888888888887776544222222222233444444444444
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+++.+ .-..|...-..++..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d--~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRD--RGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ccccCcHHHHHHHHHHHhcCC
Confidence 44444444432 3366666777777888888888887777776522 223345555666666555553
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.18 E-value=0.48 Score=45.17 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
..+|.+..++.++.+.. |+.....+..+....++++.+...|++....+ |....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666677777777655 77777777777777777888888888877764 33456666666677777888888888888
Q ss_pred HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 460 MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
++++++. ..-.......+..|+. ...++|++++-+
T Consensus 398 alrLsP~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPR--RRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HhccCch--hhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 7654322 1122233333334443 345666666543
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.15 E-value=0.12 Score=40.18 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
|..++..++.++++.|+.+....+++..-. +.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 456889999999999999999888876542 221110 00000 1112234566677777777
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+|+..|++..|+++++...+ .-+++-+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~--~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSR--KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence 77777777777777776664 33355556667666643
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.19 Score=45.16 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--HH--HHHHHHHHhcCCh
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVI--TY--NTLIDAYCKEGRM 380 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~g~~ 380 (537)
--.|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++.. +| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578888888888888876 5677788888888899999999888888888765 122332 22 3344455689999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCChHHHHHHH
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG---MRAGLVTYNILVGALCKDGKSKKAVSLL 457 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (537)
++|.+..++..+.+.. |...-.++...+...|++.++.+++.+-...= --.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999999887655 77788888888889999999999887655431 0011223334445566778999999999
Q ss_pred HHHH
Q 047648 458 DEMF 461 (537)
Q Consensus 458 ~~~~ 461 (537)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7654
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.8 Score=39.41 Aligned_cols=209 Identities=10% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.|.....+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+- ..-...|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666677777777766665431 1112222211 11234444444444431 112233444555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC--CCHHHHHHHHHHHHhcCCH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVL--PDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~~~~ 415 (537)
.+|..+.|-..+++.-+. ....++++|+.++++.... +-. --...+..+.+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555544331 2233445555555543321 100 0122344444555666666
Q ss_pred HHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 416 EGVRNIMNELVNN----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 416 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
++|-..+.+-... .--++ ...|...|-.|....++..|.+.++...++.....+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665555433211 11122 2345556666677778888888888765433332333566777777666 4577777
Q ss_pred HHHHHH
Q 047648 491 ANGLLN 496 (537)
Q Consensus 491 A~~~~~ 496 (537)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 766543
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.096 Score=48.43 Aligned_cols=127 Identities=14% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR-----GVLP---------DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL 434 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (537)
.-...|.+.|++..|...|++.+.. +..+ -..++..+..++.+.+++..|++...+.+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3466788899999999988886643 1111 12345556666777777777777777777765 5666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED-ANGLLNELLE 500 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 500 (537)
...-.=..++...|+++.|+..|+++++.. +-|-.+-+.++..-.+..+..+ ..++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666777777777777777777776543 2233333344433333333332 3556666654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.91 E-value=0.13 Score=48.72 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSV----LSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
|.+...++.+..+|...|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999864 443 35888999999999999999999998875
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.89 E-value=0.56 Score=46.26 Aligned_cols=83 Identities=7% Similarity=-0.103 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhCCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHH
Q 047648 131 KPHLGFEAFKRAGDYGLKSSVLSCN-QLLRALVKEGKFEDVEYVYKEMKRRRI---ELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
..+.|.++++.+... -|+...|. .-.+.+...|++++|.+.|+....... ......+--++..+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455566666666554 23333332 223455556666666666665432110 011112223344445555666666
Q ss_pred HHHHHHHhC
Q 047648 207 DIMEDMKSL 215 (537)
Q Consensus 207 ~~~~~~~~~ 215 (537)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 666655543
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.86 E-value=0.13 Score=44.90 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH
Q 047648 398 DVSTYNCLIAGLSR-----EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI 472 (537)
Q Consensus 398 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (537)
|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .| .
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-------------------iP-~ 125 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-------------------IP-Q 125 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------------cc-H
Confidence 45555555555432 34556666667777777877777777777766533211 11 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
.++......|-+ +-+-+++++++|...|+.||..+-..+++++.+.|.
T Consensus 126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222222322 223467777777777777777777777777776654
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.84 E-value=1.1 Score=39.05 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
.-+..-.+.|++++|.+.|+.+.... +-+ ..+.-.++-++.+.+++++|+...++..+.-+.-....|...|.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34445566777777777777777552 222 23344445566666777777777776665433222223444444444
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.22 Score=43.68 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
.|+.-+.. .+.|++..|..-|...++... .-....+-.|.+++...|++++|..+|..+.+-.+ ..+.-+..+--|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-KSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-CCCCChHHHHHH
Confidence 45554443 355667777777777776521 12234556677777777777777777777765221 112234666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888887774
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=1.3 Score=39.47 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=86.9
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4455678888888888887765322 455566777888888888888888887655422222222233344444444444
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+...+-.+.... + -|...-..+...+...|+.+.|.+.+-.++++ |.. |...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 444444444332 1 15556666777788888888888777666554 333 45555566665555553
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.77 E-value=0.66 Score=44.27 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 380 MEDAFAMRNSMLDR-GVLPD-VSTYNCLIAGLSR---------EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 380 ~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-++..+.+ +.|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778887722 23333 3344443333321 234567788888888887 778899999999889999
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCcCC
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ---TTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~ 525 (537)
+++.|...|+++..+. +....+|......+.-.|+.++|.+.+++.++ +.|.. ......++.|+..+. ++
T Consensus 353 ~~~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~-~~ 425 (458)
T PRK11906 353 QAKVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPL-KN 425 (458)
T ss_pred chhhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCch-hh
Confidence 9999999999998754 33456777777777888999999999999888 44654 344555667777764 44
Q ss_pred ccC
Q 047648 526 IEG 528 (537)
Q Consensus 526 a~~ 528 (537)
+..
T Consensus 426 ~~~ 428 (458)
T PRK11906 426 NIK 428 (458)
T ss_pred hHH
Confidence 443
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.73 E-value=1.9 Score=40.78 Aligned_cols=375 Identities=13% Similarity=0.117 Sum_probs=201.5
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
+++=+++.+ + |.|..+|-.|+.-+..++..++..+++++|..- ++--..+|...+.+-...+++..+..+|.+-+..
T Consensus 29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 344444444 3 668889999999999999999999999999864 3334567888888878889999999999998876
Q ss_pred CCCCChhhHHHHHHHHhcCCC--CCCH-HHHHHHHHHHHH-CCCCCCH-HHHHHHHHHH---hc------cCCHHHHHHH
Q 047648 216 GVSPKVVTYNILIDGYCKKGG--IGKM-YKADAVFKDMVE-NGILPNE-VTFNTLIDGF---CK------DENISAAMKV 281 (537)
Q Consensus 216 ~~~~~~~~~~~ll~~~~~~~~--~~~~-~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~---~~------~g~~~~a~~~ 281 (537)
. .+...|...+.-.-+... .|+. ....+.|+-... .++.|-. ..|+..+... -. ..+++.....
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 356667666654444211 1111 111223332222 3444433 2233322211 11 2334555556
Q ss_pred HHHHHhCCCCCChhhH------HHHHHHHH-------hCCCHHHHHHHHHHHHH--cCCCC----CHH------------
Q 047648 282 FEEMGSHGIAAGVVTY------NSLINGLC-------VDGKLDEAVALRDEMMA--SGLKP----NVV------------ 330 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~------~~l~~~~~-------~~~~~~~A~~~~~~~~~--~~~~~----~~~------------ 330 (537)
|.+|....+..-...| ..=++-.. ..--+-.|...++++.. .|... +..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 6666543111001111 11011000 01112334444443322 01100 000
Q ss_pred --------------------------HHHHHH--------------HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 047648 331 --------------------------TSNALI--------------NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTL 370 (537)
Q Consensus 331 --------------------------~~~~ll--------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (537)
.++..+ ..+...++-+.|......-... .|+ .---+
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 111111 1112234444444444332221 222 11112
Q ss_pred HHHHHhcCChHHHHHHHHHHHh--------------CCCC---------------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLD--------------RGVL---------------PDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~--------------~~~~---------------p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
...|.-..+-+.....|+.... .+.. --..+|...+..-.+...++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 2233333332222222221110 0110 1234567777777788889999999
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 422 MNELVNNG-MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 422 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|-+..+.+ +.+++.++++++.-++ .|++..|-.+|+--+. .++.+...-.-.+..+.+-++-+.|..+|+..++
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~----~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL----KFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 99999987 5788889999998765 5788889999987653 2233334445667778888999999999997665
Q ss_pred cCCCCC--HHhHHHHHHHHHhcCCcCC
Q 047648 501 KGLIPN--QTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 501 ~g~~p~--~~~~~~l~~~~~~~g~~~~ 525 (537)
+ +..+ ..+|..+++-=..-|.+..
T Consensus 495 r-~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 495 R-LEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred H-HHHhhhhHHHHHHHHHHHhhcchHH
Confidence 3 2223 4567777766556665543
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.28 Score=45.54 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
..++..+..+|.+.+++..|+..-+..+..+.. |...+..-.+++...|+++.|+..|+++++.. |.|-.+-+-++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346777888999999999999999999988655 88888889999999999999999999999974 4445555566655
Q ss_pred HHhcCCh-HHHHHHHHHHHH
Q 047648 444 LCKDGKS-KKAVSLLDEMFK 462 (537)
Q Consensus 444 ~~~~g~~-~~A~~~~~~~~~ 462 (537)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 5555443 445788888875
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.71 E-value=0.77 Score=36.22 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 410 SREGNVEGVRNIMNELVNNG--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+.|++++|.+.|+.+...- -+-...+-..++.+|.+.|++++|...+++.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44555555555555555441 01122344445555555555555555555555543
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.45 Score=42.87 Aligned_cols=162 Identities=7% Similarity=-0.014 Sum_probs=110.8
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCH
Q 047648 270 CKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA----LINGFCKKKLV 345 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~ 345 (537)
-..|++.+|-..++++.+. .|.|..++...=.+|.-.|+.+.-...++++...- .+|...|.. ..-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888888998875 56688888888899999999999999998887641 244433332 23334578999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++|++.-++..+.+.. |...-.++...+--.|++.++.++..+-.+. +-..-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988876533 5556667777788899999999887765432 10001112222333445668999999999
Q ss_pred HHHH-HCCCCCCh
Q 047648 423 NELV-NNGMRAGL 434 (537)
Q Consensus 423 ~~~~-~~~~~~~~ 434 (537)
++-+ +.--+.|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7544 43224444
No 245
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.41 Score=46.52 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred hccCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 270 CKDENISAAMKVFEEM-GSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
.-.++++++.++...- .-..+ +....+.++.-+.+.|-++.|+.+..+-. .-.+...+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 3456666665555411 11111 23345666666777777777776553321 123445667777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.++.++. .+...|..|.+...+.|+++-|.+.+.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6654332 2566777777777777777777777766543 445555666777777777776666655
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
| -++....++.-.|+.++..+++.+.
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4 2455555666667777777766644
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.50 E-value=1 Score=36.05 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 33444444444455555554444432 2444455555555443
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.46 E-value=3 Score=41.28 Aligned_cols=161 Identities=17% Similarity=0.069 Sum_probs=82.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHH------H----hCCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGSHG-IAAGVVTYNSLINGL------C----VDGKLDEAVALRDEMMASGLKPNVV 330 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~------~----~~~~~~~A~~~~~~~~~~~~~~~~~ 330 (537)
+..+++...-.|+-+.+++.+.+..+.+ +. .+.+--.|+.-| + .....+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4455666666677777777777655432 22 122211222111 1 133456677777776664 35544
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 331 TSNAL-INGFCKKKLVEKARVLFDDISEQG---LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 331 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
.|... .+.+...|++++|.+.|+...... .......+--++-++.-..+|++|.+.|..+.+..-- +..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 44333 344556677777777777544210 0112223334555566667777777777777665322 333443333
Q ss_pred HH-HHhcCCH-------HHHHHHHHHHH
Q 047648 407 AG-LSREGNV-------EGVRNIMNELV 426 (537)
Q Consensus 407 ~~-~~~~~~~-------~~a~~~~~~~~ 426 (537)
.+ +...++. ++|.++|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 32 2344555 56666666554
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.43 E-value=0.52 Score=36.12 Aligned_cols=93 Identities=16% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD---SFNFVLNGLCKA 199 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 199 (537)
.-++...|+.+.|++.|.+.+.. .|...++||.-..++.-+|+.++|++-+++..+..-..... .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34678889999999999999876 35578899999999999999999999998887753222222 344445567788
Q ss_pred CChhHHHHHHHHHHhCC
Q 047648 200 GKLNKASDIMEDMKSLG 216 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~ 216 (537)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888776
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.37 E-value=1.1 Score=35.78 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK 233 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 233 (537)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444555555555555554442 344455555555554
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.35 E-value=1.7 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+...|.+.|.+-.|..-++++++- -...+-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456678888888888888888752 111122344556666788888888888877666654
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.18 E-value=2 Score=37.56 Aligned_cols=222 Identities=18% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12445555566666667777766666666542 123444555555666666666777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 351 LFDDISEQGLSPSVITYNTLID-AYCKEGRMEDAFAMRNSMLDRGV--LPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543332 112222222 56777777777777777755321 11333344444445667778888888877777
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 428 NGMRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 428 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.. +. ....+..+...+...++++.|...+....... +.....+..+...+...+..+++...+++...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 35667777777777778888888887776522 11234445555555566677888887777776
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.04 E-value=0.078 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL 157 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 157 (537)
.++..+...|.+.|++++|.++|+++++.. |-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 356667788888888888888888888764 3355555444
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.03 E-value=0.47 Score=37.40 Aligned_cols=74 Identities=14% Similarity=-0.030 Sum_probs=43.7
Q ss_pred hcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH
Q 047648 75 VAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC 154 (537)
Q Consensus 75 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 154 (537)
+.|++.+|.+.++.+..+ ++..+-..-+.-.++.+|.+.+++++|+..+++.++.++......|
T Consensus 22 ~~~~Y~~A~~~le~L~~r----------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR----------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HhCCHHHHHHHHHHHHhc----------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 555566665555555444 2221223344445777788888888888888887777655444556
Q ss_pred HHHHHHHHhC
Q 047648 155 NQLLRALVKE 164 (537)
Q Consensus 155 ~~l~~~~~~~ 164 (537)
...+.+++..
T Consensus 86 a~Y~~gL~~~ 95 (142)
T PF13512_consen 86 AYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.02 E-value=1.9 Score=39.48 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH----
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQG-----LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDV---- 399 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---- 399 (537)
.++..++...+.++++++.|+...+.- ......++..|...|.+..++++|.-+..+..+. ++. |.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHH
Confidence 335555566666666666666654421 1112345666667777777777766555544321 222 21
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 --STYNCLIAGLSREGNVEGVRNIMNELVNN----GMRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.....+.-++...|.+..|.+..++..+. |-.+ .......+.+.|...|+.+.|..-|+.+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 12223334555667766666666665443 2111 123345566777778888887777776653
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.02 E-value=1.9 Score=39.56 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHh
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMAS--GLKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSP---SVI 365 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~ 365 (537)
.++..+..+.++.|.+++++..--..+.. .... --..|..+.+++.+..++.+++.+-..-... |..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555556667777776665433221110 0001 1234445555555555555555554443332 2222 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR-----GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAGLVT 436 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 436 (537)
....+..++...+.++.+++.|+...+. +......++..+...|....++++|.-+..+..+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344677788888899999999887653 11123457888999999999999998877766543 22221222
Q ss_pred H-----HHHHHHHHhcCChHHHHHHHHHHHHchhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 437 Y-----NILVGALCKDGKSKKAVSLLDEMFKMEKE-KK-WPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 437 ~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
| -.+.-++...|..-.|.+.-+++.++.-. |- ..-......+...|...|+.+.|..-|++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3 23445677888888888888887663211 11 1123445667778888999888887776643
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.93 E-value=0.1 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
+..+...|.+.|++++|.++++++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444444555555555555555555443
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=1.3 Score=43.23 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=59.2
Q ss_pred ChHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH-------HHHHCCCCCChHH
Q 047648 28 DPNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLH-------MFVKNGKFTSVST 100 (537)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~-------~~~~~g~~~~~~~ 100 (537)
.+..+.-.+....++.+.+++......-.+..| ..-.+.++.-+.+.|..+.|..+.. ..++.|+.+.|.+
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALE 339 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHH
Confidence 334343344455566777666554222112223 3447888999999999999888743 3334444333322
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 047648 101 IFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (537)
+.+ ...++..|..|.....++|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++-+....
T Consensus 340 ~a~--------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 340 IAK--------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HCC--------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHH--------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 012334455555555555555555555544432 23334444444444444444444433
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.59 Score=41.14 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI--ELNLDSFNF 191 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 191 (537)
..|+.-+ .+...|++..|.+.|...++.. |-+ ..++--|..++...|++++|..+|..+.+.-. +--+..+-.
T Consensus 143 ~~Y~~A~-~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 143 KLYNAAL-DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555444 4556778999999999988763 222 23455578899999999999999988877532 113467778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
|..+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888999999999999999887
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.8 Score=36.27 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHhcCCCChHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHH----HHHHCCCCCChHHHHHHh
Q 047648 34 LQLFNSDADPVLILRYFCWSTKE----LRASHSLLLTGRLLHSLVVAKKYPKIRSFLH----MFVKNGKFTSVSTIFHAL 105 (537)
Q Consensus 34 ~~l~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~----~~~~~g~~~~~~~~~~~~ 105 (537)
++-++..++++.|..-+..+.+- ...-|....|...+-.+-....+.++..+++ .|+++|..+.+...++..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 45667777788877766666532 1222344445444444444455555544443 345555544444333322
Q ss_pred hhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC---C--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 106 STCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY---G--LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
.. ...+.++++|+++|++.... + ..--...+....+.+++..++++|-..+.+-...
T Consensus 118 ak------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 118 AK------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HH------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 21 23455667777777665432 0 0011223445555666667776665554432211
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 047648 181 ----RIELNL-DSFNFVLNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVF 247 (537)
Q Consensus 181 ----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 247 (537)
.--++. ..|...|-.+.-..++..|.+.++.-.+.+ -+-+..+...|+.+|-. |+.+++.+++
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~----gD~E~~~kvl 250 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE----GDIEEIKKVL 250 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc----CCHHHHHHHH
Confidence 011121 234455556666778888888887744432 22355667777777754 6666655443
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.35 Score=42.39 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 183 ELNLDSFNFVLNGLCKA-----GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
+.|..+|...+..+... +.++-....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK----gkfi-P~nvfQ--------- 129 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK----GKFI-PQNVFQ--------- 129 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc----cccc-cHHHHH---------
Confidence 34666777777666543 4556666667777777887788888887777765 2210 001111
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK 309 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (537)
...-.|- .+-+-+++++++|...|+.||-.+-..+++++.+.+-
T Consensus 130 ------~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ------KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 1223456666677767777776666666666666554
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.45 E-value=2.5 Score=35.84 Aligned_cols=204 Identities=16% Similarity=0.070 Sum_probs=117.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPN-VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
|-..|-+.-|.--|.+.... .|+ +..||.+.-.+...|+++.|.+.|+...+.++.-+....|.-+ ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 44556666677667666653 454 5778888888889999999999999998876554444444333 2335689999
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIM-NELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
|.+-+...-..++. |+ ..|-.+. ...-++.+|..-+ ++... .|..-|...+-.|.- |+.. ...++++
T Consensus 152 Aq~d~~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence 98887777766544 33 2333332 2334555665444 33332 233344433333221 2211 1223333
Q ss_pred HHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 460 MFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 460 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+......+ ...=..+|--+..-+...|+.++|..+|+-.+..++. +.+-++-.+-.+.+.|
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy-nfVE~RyA~~EL~~l~ 285 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY-NFVEHRYALLELSLLG 285 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 32211000 0012457888888999999999999999999875443 3333333333333333
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.38 E-value=0.58 Score=41.83 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTT 509 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 509 (537)
.++..++..+...|+.+.+.+.+++.+... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 344555556666666666666666665433 33555666666666666666666666665544 466666665
Q ss_pred HHHHHHH
Q 047648 510 YQIVREE 516 (537)
Q Consensus 510 ~~~l~~~ 516 (537)
.....+.
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5555544
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=0.87 Score=46.34 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI----NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
..-+....+...++-|+.+-+.- + .+..+...++ +-+.+.|++++|..-|-+-... +.| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455555555555555543322 1 1222222222 2334566666666655554432 122 123344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
|........-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44455555555666666666555 44455556666666666665544443332 1111 11123344445555555555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+-.+... +..... -.+-..|++++|++.++.+
T Consensus 483 ~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 544433221 112222 2233445666666666654
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.28 E-value=9.3 Score=41.11 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhh-CCC--CCChhhHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHHHH----HH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGD-YGL--KSSVLSCNQLLRALVKE-GKFEDVEYVYKEMKRRRIELNLDSFN----FV 192 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~----~l 192 (537)
.-++-++..+++.+|+++-++-+- .++ ..+...|..-+.++.+. ++.+-...++..+....+. ...|. +-
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvt--k~~y~~~~~s~ 759 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVT--KTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhh--hhhcccccccc
Confidence 455677888888888776665431 111 11223333334444443 3444444444444432211 11111 00
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047648 193 LNGLCKAG----KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE 252 (537)
Q Consensus 193 ~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 252 (537)
...|.... .++...+.+.....+ ..|+ .....+|..|.+.. ...+++++....+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~-~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSN-PPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcC-cHHHHHHHHHHHHHHh
Confidence 01111111 222233333333333 2344 44556777777722 2366777766666654
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.18 E-value=6.4 Score=38.90 Aligned_cols=387 Identities=12% Similarity=0.008 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..|..++.---...+.+.+..++..++.. .|.----|......-.+.|..+.+.++|++.... ++.+...|......+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 34444444333333444555555555532 2222224555555555666666667777666543 444555555444333
Q ss_pred H-hcCChhHHHHHHHHHHhC-CCC-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---
Q 047648 197 C-KAGKLNKASDIMEDMKSL-GVS-PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC--- 270 (537)
Q Consensus 197 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 270 (537)
. ..|+.+...+.|+...+. |.. .+...|...|.--.. ..++.....++++.++. | ...|+..-.-|.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---QKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---cccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 2 345666666666665543 221 234445555555444 56666666666666553 1 111111111111
Q ss_pred cc------CCHHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHH-------HHHHhCCCHHHHHH
Q 047648 271 KD------ENISAAMKVFEEMGS--------------------HGIAAGV--VTYNSLI-------NGLCVDGKLDEAVA 315 (537)
Q Consensus 271 ~~------g~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l~-------~~~~~~~~~~~A~~ 315 (537)
+. ...+++.++-..... .+.+.+. ...+.+- .++-..........
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 112222222211110 0000000 0011111 11112222233333
Q ss_pred HHHHHHHcC---CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 316 LRDEMMASG---LK----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 316 ~~~~~~~~~---~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
.++.-.+.. ++ ++..+|..-+..-.+.|+.+.+..+|+...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 333333321 12 24567888888888999999999999887542 11123345455555556688888888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHH---HHHHHHHHch
Q 047648 389 SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAV---SLLDEMFKME 464 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 464 (537)
...+-..+-.+.+--.-.......|++..|..+++.+...- |+ ...-..-+....+.|..+.+. +++....+
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-- 431 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-- 431 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--
Confidence 76665433233322222223445789999999999998863 44 333344455667788888877 44444432
Q ss_pred hcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 465 KEKKWPNIVTYNVLIKG-----FCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+ .-+......+.-- +.-.++.+.|..++.++.+. +.++...|..+++-....+
T Consensus 432 --~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 --G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred --c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1 1222333333322 23368899999999999883 3334555666666554444
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.02 E-value=0.74 Score=41.19 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-----NGMRAGLVTYNIL 440 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 440 (537)
++..++..+...|+++.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 5566677777777777777777777776555 666777777777777777777777776665 2666665555544
Q ss_pred HHH
Q 047648 441 VGA 443 (537)
Q Consensus 441 ~~~ 443 (537)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 267
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.93 E-value=8.9 Score=39.64 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHHHhhcCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 46 ILRYFCWSTKELRASHS--LLLTGRLLHSLV-VAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
|+..++.+.+....+|. ..++-.+..+|. ...+++.|+..+......-.-..-.++ . -.....+
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~----k---------~~~~~ll 106 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL----K---------FRCQFLL 106 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH----H---------HHHHHHH
Confidence 55666666654333333 335677778877 577899998888754432110100000 0 0222345
Q ss_pred HHHHHHcCCchHHHHHHHHHhhC----CCCCChhhHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDY----GLKSSVLSCNQL-LRALVKEGKFEDVEYVYKEMKRRR---IELNLDSFNFVLN 194 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 194 (537)
++.+.+.+... |...+++.++. +..+-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 66666666555 88888887654 112223334433 223333478999999988876532 2334445555555
Q ss_pred HHH--hcCChhHHHHHHHHHHhCCC---------CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047648 195 GLC--KAGKLNKASDIMEDMKSLGV---------SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDM 250 (537)
Q Consensus 195 ~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 250 (537)
+.. +.+..+++.+.++++..... .|-..+|..++..++.-. .|++..+...++++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~-~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQ-QGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 544 44666777777777643211 234556777766655422 45655555554444
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.87 E-value=5 Score=36.58 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVE---KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
.++..++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|+..-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34566666676666543 445555555443222 2344444555666677788888888888775221 222333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCChH-HH-HHHHH---HHHhcCC------hHHHHHHHHHHHHchhcCCCCC-
Q 047648 407 AGL---SREGNVEGVRNIMNELVNNGMRAGLV-TY-NILVG---ALCKDGK------SKKAVSLLDEMFKMEKEKKWPN- 471 (537)
Q Consensus 407 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~l~~---~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~- 471 (537)
..+ .. .....+...+..++...+.|... .. ..++. .....++ .+...+++..+.+.......+.
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 23345555555555443444432 11 11111 1112111 3333344443322122222221
Q ss_pred HHHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 047648 472 IVTYNVLI----KGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 472 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 499 (537)
.....+++ ..+.+.+++++|.+.|+-.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 12222222 34566889999999988654
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.85 E-value=0.18 Score=28.46 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.85 E-value=5.2 Score=36.68 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCC--
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFCK--DE----NISAAMKVFEEMGSHGI---AAGVVTYNSLINGLCVDGK-- 309 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 309 (537)
++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555444432222221 11 23455666666665421 1223333333322 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHhHHHHH
Q 047648 310 --LDEAVALRDEMMASGLKPNV--VTSNALINGFCKKKL--VEKARVLFDDISEQGLSPSVITYNTL 370 (537)
Q Consensus 310 --~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (537)
.+.+..+|+.+.+.|+..+. ...+.++........ ..++..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555555543321 222222222221111 23555555666666555555554433
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=3.3 Score=33.74 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=61.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCCCC
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYNILIDGYCKKGGIGK 239 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~ 239 (537)
.+.+..++|+.-|..+.+.|..--+. ....+.......|+...|...|+++-.....|-.. -...|=.+|.. -+.|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL-vD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL-VDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH-hcccc
Confidence 44555666666666666654431111 11122233455666666666666665543223222 11111112211 11566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
++......+.+-..+-+.-...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6665555555444333333344455555666677777777777666553
No 272
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=9.6 Score=38.77 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=85.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
.-.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++.+++-+... .+.-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445556666778899999988777664 4688999999999999999998877665543 2456777899
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+|.+.|+.++|.+++-+.. +.. -...+|.+.|++.+|.++.-+
T Consensus 753 ~c~~~~n~~EA~KYiprv~--------~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--------GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccC--------ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999987662 221 567889999999998876443
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.53 E-value=4.7 Score=35.11 Aligned_cols=201 Identities=16% Similarity=0.072 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSH-GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN- 337 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~- 337 (537)
..+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122334444445555555555666666666655532222 111112222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGL--SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (537)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666667777666666644211 1122233333334556677777777777777653221355666777777777778
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+.+...+....... +.....+..+...+...+..+.+...+.....
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888887777653 11234444444445566678888888877765
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.34 E-value=3 Score=32.28 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
+...+......|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444455555555555555555431 234455555555555555555555555555555543
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.27 E-value=0.23 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777888888888888888888553
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.22 E-value=4 Score=33.46 Aligned_cols=32 Identities=9% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047648 173 VYKEMKRRRIELNLDSFNFVLNGLCKAGKLNK 204 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (537)
.++.+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444445555555555555555555555443
No 277
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.21 E-value=12 Score=38.77 Aligned_cols=410 Identities=12% Similarity=0.087 Sum_probs=207.0
Q ss_pred HHHHHHHHHHH-HcCCchHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhCCChhHHHHHHHHHHhCC----CCCCH
Q 047648 117 IIIDMLMLAYV-KNMKPHLGFEAFKRAGDYGLKSSVL-----SCNQLLRALVKEGKFEDVEYVYKEMKRRR----IELNL 186 (537)
Q Consensus 117 ~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 186 (537)
.+.--++..+. ...+++.|...+++.....-.++.. .-..++..+.+.+... |...+++.++.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445666665 6789999999999886543233322 2234556666666655 888888866531 22223
Q ss_pred HHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC--------
Q 047648 187 DSFNFV-LNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-------- 254 (537)
Q Consensus 187 ~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------- 254 (537)
..|..+ +..+...++...|.+.++.+.... ..|...++..++.+..... .+..+++.+.++++....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~-~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR-RGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhhcccCCC
Confidence 333443 333334489999999999887642 2344455555555554421 455566666666663321
Q ss_pred -CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHh-------CC----------CC-------------CChhhH----
Q 047648 255 -ILPNEVTFNTLIDGFC--KDENISAAMKVFEEMGS-------HG----------IA-------------AGVVTY---- 297 (537)
Q Consensus 255 -~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-------~~----------~~-------------~~~~~~---- 297 (537)
..|-..+|..+++.++ ..|+++.+...++++.+ .. ++ +....|
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 1345566777766544 66787777766655532 10 00 111111
Q ss_pred -----HHHHH--HHHhCCCHHHHHHHHHHHHH--------cCCCCC--------HHHHHHHHHH---------HHhcCCH
Q 047648 298 -----NSLIN--GLCVDGKLDEAVALRDEMMA--------SGLKPN--------VVTSNALING---------FCKKKLV 345 (537)
Q Consensus 298 -----~~l~~--~~~~~~~~~~A~~~~~~~~~--------~~~~~~--------~~~~~~ll~~---------~~~~~~~ 345 (537)
..++. ..+..+..++|.+++++..+ ....+. ...|...+.. .+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 11112 22344544455555554332 111111 1112222222 2346889
Q ss_pred HHHHHHHHHHHHcCC-CCC-------HhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHH--HH
Q 047648 346 EKARVLFDDISEQGL-SPS-------VITYNTLIDAYCKEGRMEDAFAMRN--------SMLDRGVLPDVSTYNCL--IA 407 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l--~~ 407 (537)
..|...+..+.+... .|+ +..+....-.+...|+.+.|...|. .....+...+..++..+ +.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 999999998875411 111 2222223333446799999999998 44455555444444332 11
Q ss_pred HHHh--cCCHHH--HHHHHHHHHHC-CCCCC--hHHHHHH-HHHHHhcCC--hHHHHHHHHHHHHch--hcCCCC-CHHH
Q 047648 408 GLSR--EGNVEG--VRNIMNELVNN-GMRAG--LVTYNIL-VGALCKDGK--SKKAVSLLDEMFKME--KEKKWP-NIVT 474 (537)
Q Consensus 408 ~~~~--~~~~~~--a~~~~~~~~~~-~~~~~--~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~~--~~~~~~-~~~~ 474 (537)
.+.. ....++ +..+++.+... .-.|+ ..++..+ +.++..... ..++...+.+.++.- ..+..- -..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 2222 222333 67777766543 11222 2333333 333332222 236666665555432 111111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHhHH-----HHHHHHHhcCCcCCccCC
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLI-P--NQTTYQ-----IVREEMMEKGFIPDIEGH 529 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p--~~~~~~-----~l~~~~~~~g~~~~a~~~ 529 (537)
++.+...+. .|+..+..+.........-+ | ....|. .+.+.+...|..++|...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 333333333 78887766665554432111 2 334453 334457778888877654
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.14 E-value=1.7 Score=36.28 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
.+..+...|++.|+.+.|++.+.++.+....+. ...+..+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555554422222 1233444444445555555555444443
No 279
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.08 E-value=3.3 Score=32.05 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555554432 23345555555555555555555555555555444
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.08 E-value=4.2 Score=33.32 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
+++..+.+.+++|+...+..+++.+.+ .|++. .+.++...++-+|+......+-.+. +....+.++=-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~---~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIR---NGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 344444555566666666666666666 44433 2444444455445443333222221 12222333333333
Q ss_pred hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
++ =...+..++..+...|++-+|+++....
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 0012344555555666666666555543
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.07 E-value=0.26 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.04 E-value=0.24 Score=28.55 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888654
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.99 E-value=8.4 Score=36.52 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 158 LRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
+.+..+.|+++...+........ .++...+..+... ..|+.+++...++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34455556666544444333322 1233333333322 5566666666655554
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.94 E-value=9.5 Score=36.99 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
.+..++-+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444555555555555555443211 12223444555555555555555555554
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.92 E-value=7.4 Score=35.69 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC-
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK---GGIGKMYKADAVFKDMVENGI---LPNEVTFNTLIDGFCKDEN- 274 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~- 274 (537)
+++...+++.|.+.|+..+..+|-+........ .......++..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 345667788888888887776665533333220 001235568889999988753 2344556565544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 275 ---ISAAMKVFEEMGSHGIAAGV--VTYNSLINGLCVDGK--LDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 275 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
.+.+..+|+.+.+.|...+- ...+.++........ ..++.++++.+.+.|+++....|..+.-...-.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 35677788888887765443 233333332222222 4578889999999999888777766544443333
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.73 E-value=2.8 Score=35.07 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667778888888888888888888777643332 234556677777778888777777666543
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.70 E-value=0.16 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 469 WPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+-|+.+|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335666666666666666666664
No 288
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.62 E-value=11 Score=36.69 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+..++.+.|+.++|++.+++|.+.... ....+...|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34445555666666666666666554211 12335555666666666666666666654
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.59 E-value=2.1 Score=36.07 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.|+ +.|.+.|-++...+.-.++.....|...|. ..+.++++.++.+++++...+-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 566777767766654444554455544444 6678888888888887766665778888888888888888877
Q ss_pred HHH
Q 047648 490 DAN 492 (537)
Q Consensus 490 ~A~ 492 (537)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.56 E-value=10 Score=36.40 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=85.7
Q ss_pred HCCCCCCh-HHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH
Q 047648 91 KNGKFTSV-STIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED 169 (537)
Q Consensus 91 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (537)
..|+...+ .+++..+.. + +..++........+...|+++.+++.+....+. +.....+...+++...+.|++++
T Consensus 301 ~~gd~~aas~~~~~~lr~-~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-Q---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hccCHHHHHHHHHHHHHh-C---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34555433 334444443 2 333344444445567789999999988877654 34566788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
|...-+.|....++ +.++........-..|-++++.-.|.++....
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988776 66666666666667788999999999987664
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.28 E-value=15 Score=37.81 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-------FEDVEYVYKEMKRRRI 182 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 182 (537)
.+|-.+.|+|.+++|.++....... .......+...+..+....+ -+....-|++..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4667789999999999999655543 34455666777777766432 2345566666655533
No 292
>PRK09687 putative lyase; Provisional
Probab=91.70 E-value=10 Score=34.53 Aligned_cols=235 Identities=13% Similarity=0.057 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL----DEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
+|.......+..+...|.. .+...+..+... ++...-...+.++.+.|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3555566666666666643 333333344332 3555555566666777653 4577777766433 4666666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 333 NALINGFCKKKLV-----EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 333 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666655421 223333333322 2356666677777877776 4566776666653 35555566666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 408 GLSREG-NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 408 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
++.+.+ ..+.+...+..+.. .++..+....+.++.+.|+ ..|+..+-+.++ .++ .....+.++...|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~------~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK------KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc------CCc--hHHHHHHHHHhcC
Confidence 666543 24466666666664 4677888888999999888 456666666653 123 3456778888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 487 KLEDANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
.. +|+..+.++.+. .||.......+.+|.+
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 86 689999998873 3688887777777653
No 293
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.60 E-value=9.7 Score=34.07 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTTY 510 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 510 (537)
.++.....|..+|.+.+|.++.++.+... +.+...|..++..++..|+--.|.+.++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld----pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD----PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34566778999999999999999998644 45788899999999999998888888888754 4776655443
No 294
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.59 E-value=2.1 Score=35.22 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHH-------HHHHHCCCCCC-hHHHHHHHHHHHhcC
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLI---AGLSREGNVEGVRNIM-------NELVNNGMRAG-LVTYNILVGALCKDG 448 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~-------~~~~~~~~~~~-~~~~~~l~~~~~~~g 448 (537)
++.|.+..+.-...++. |...++.-. .-+++.....++.+++ ++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 45555555554444433 444333322 2233333333333333 333332 333 356666666666665
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.53 E-value=0.25 Score=27.98 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 423 NELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
++.++.. |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 455666777777777777766664
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.45 E-value=6.6 Score=31.82 Aligned_cols=57 Identities=5% Similarity=-0.140 Sum_probs=30.8
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR 181 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (537)
...+.+.|++.+|+.+|+.+... .|.......|+..|....+-..-...-+++.+.+
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 34467778888888888887654 3444444555555544333223333333444443
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.21 E-value=0.65 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+|..+..+|...|++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666777777777777777777777654
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.21 E-value=0.54 Score=27.88 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+++.+...|...|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555666666666666666666666543
No 299
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.15 E-value=13 Score=34.72 Aligned_cols=58 Identities=7% Similarity=-0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
-+.++++++++++. +...+..++..+.+..+.+...+-|+++.... +-+...|...++
T Consensus 50 klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~ 107 (321)
T PF08424_consen 50 KLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 34444444444332 44444445555555555555555555555442 223444444443
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.91 E-value=17 Score=35.47 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
|.....+++..+..+-.+.-+..+..+|..-| -+...|..++.+|..+ ..+.-..+++++.+..+ .|.+.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444455555555555555555555555432 2444455555555555 33444555555554321 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047648 338 GFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~ 357 (537)
.|.+ ++...+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 444555555544443
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.78 E-value=8 Score=31.64 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
...|.++......+.+...+.+.....-..|.-+-.+.|++..|.+.|..+.
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 3445555555544444433333333344445555555555555555555554
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.57 E-value=0.84 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+..+...+...|++++|++.|++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777654
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.70 E-value=20 Score=34.54 Aligned_cols=126 Identities=12% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRM 380 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 380 (537)
|.-....|+.-.|-+-+...... .+.++.........+...|+++.+...+....+. +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567766665544444433 1233333333444567788999988888776554 223455777888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
++|.....-|+...+. ++.......-..-..|-++++...|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999888877666 66655554444556778899999999888765
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.54 E-value=35 Score=37.09 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=54.6
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVV--TSNALINGFCKKKLVE 346 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 346 (537)
+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...+++-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 33445556555555544321 23356666677777777766665421 1221 1245556666667776
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
+|-++..+.... ....+..|++...|++|.++....
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666555432 122344455666677776665443
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.41 E-value=22 Score=34.65 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
|.....+++..++.+....-++.+-.+|...| -+-..|..++.+|... ..+.-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555555555555555555555555543 1344455555555555 445555555555555433 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
.|.+ ++.+.+..+|.++...-++.. ...|.-+...- ..+.+....+..++.. ..|...-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt--~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQT--KLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHH--hhccchHHHHHHHHHHHh
Confidence 4433 555555555555554321100 11222222111 2234444444444432 222222333444444455
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 047648 483 CQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~ 501 (537)
....++++|+++++..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 5555666666666655554
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.41 E-value=10 Score=30.76 Aligned_cols=51 Identities=14% Similarity=-0.064 Sum_probs=20.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
+.++.+++..+++-+.-..+. ....-..-...+...|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555544433222 111111122233444555555555555443
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.25 E-value=13 Score=31.75 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPNEVTFN 263 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~ 263 (537)
-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..|.- |++.-|.+-+.+.-+.+. .|-...|.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~----gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG----GRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec----CchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 4567888888888999999999999998887544444445555555543 888888777766655432 22233333
Q ss_pred HHHHHHhccCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC------CCCHHHHHHH
Q 047648 264 TLIDGFCKDENISAAMKVF-EEMGSHGIAAGVVTYNSLINGLC-VDGKLDEAVALRDEMMASGL------KPNVVTSNAL 335 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~l 335 (537)
.+.. ..-++.+|..-+ ++.... |..-|...|-.+. ..=..+ .+++.+....- ..-+.||--+
T Consensus 174 Yl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 174 YLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 3332 233555555433 333332 3333433332222 111111 12222222110 0113456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 336 INGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
...+...|+.++|..+|+-....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 67777777777777777766553
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.24 E-value=11 Score=31.81 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=52.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
.-+...|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345667777777777777776522211 1233344445666777777777777666654 22223333334566666
Q ss_pred CChHHHHHHHHHHHH
Q 047648 448 GKSKKAVSLLDEMFK 462 (537)
Q Consensus 448 g~~~~A~~~~~~~~~ 462 (537)
..+++|++-|+++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777777765
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.23 E-value=0.75 Score=25.77 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555544
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=6 Score=35.70 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
|.+....+...++..-....+++.+..++-++.... ..|+. +-.+.++.+.+ -+.++++.++..=.+-|+.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 334344455555555555667777777766665431 11222 22334444444 45557777777777778888
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
|-.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776665543
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.32 E-value=32 Score=35.08 Aligned_cols=79 Identities=13% Similarity=-0.001 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHhCCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 047648 132 PHLGFEAFKRAGDYGLKSSVLSCNQLLRA-----LVKEGKFEDVEYVYKEMKR-------RRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 199 (537)
...|+++++...+.| +...-..+... ....++.+.|...|....+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666554 22222122211 2234556666666666554 32 222334444444442
Q ss_pred C-----ChhHHHHHHHHHHhCC
Q 047648 200 G-----KLNKASDIMEDMKSLG 216 (537)
Q Consensus 200 g-----~~~~a~~~~~~~~~~~ 216 (537)
. +.+.|..++.+..+.|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC
Confidence 2 3444555555555544
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.90 E-value=1.5 Score=25.82 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+++.+...|...|++++|..++++.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999999876
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.47 E-value=12 Score=37.23 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHH-------HHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSF-------LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLG 135 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 135 (537)
....+.+++-+.++|..++|..+ ++..++.|..+-|.++.. + ..+..-|..|..+....|++..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~---e-----~~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAV---E-----ANSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHH---h-----hcchHHHHHHHHHHhhcccchhH
Confidence 34567788888888888888765 333344444333333221 1 22335566666666666666666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 211 (537)
.+.|.+..+ |..|+-.+...|+.+....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 666665543 224444455555555444444444444321 2223344556666666666544
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.01 E-value=1.2 Score=26.96 Aligned_cols=25 Identities=40% Similarity=0.745 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
+..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666533
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.98 E-value=2 Score=24.00 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+|..+...|...|++++|.+.|++.+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356677778888888888888888887654
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.96 E-value=5 Score=36.57 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
..-|.+.|.+++|++.+.+.....+. +++++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 55677777777777777776654332 66666666677777777776666666555432 11223333334444444555
Q ss_pred HHHHHHHHHHHH
Q 047648 451 KKAVSLLDEMFK 462 (537)
Q Consensus 451 ~~A~~~~~~~~~ 462 (537)
.+|.+-++.+++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
No 317
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.64 E-value=18 Score=30.40 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL-----SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
.+...+...|++++|..-++..... |... +-..|.+.....|.+++|+..++.....+.. ......-...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 4567888899999999999888753 2222 2234556777888999999888877665432 2223445667
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 047648 196 LCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~ 216 (537)
+...|+-++|..-|++..+.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888889988888888764
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.87 E-value=9.9 Score=32.15 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
+.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+.++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433334444444443333 34555555555554432 2234555555555555555555544
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.85 E-value=11 Score=34.15 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHG---IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
...+...++..-....+++.++..+-++.... ..++... .++++. +..-++++++.++..=++-|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444444555666666655554321 1111111 112221 222345566666655555566666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
+++.+.+.+++..|..+...|..+
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666655555443
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.82 E-value=32 Score=32.52 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE 252 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 252 (537)
...+.-+.|+++...+........ .++...+..+... + .++.+++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~---~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--R---QGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--h---CccHHHHHHHHHHHHH
Confidence 355677889998866665555432 2344555555544 4 6888888877777654
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.68 E-value=85 Score=37.27 Aligned_cols=321 Identities=10% Similarity=-0.005 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLK--SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
.+..+-.+++.+.+|+..++.-.....+ .....|-.+...|...++++....+...-.. +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 5667888899999999999984221111 1122344444489999999998888774221 222333 3445667
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHH
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTL-IDGFCKDENISA 277 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~ 277 (537)
.|+++.|...|+++.+.+ ++...+++-++..... .+.+...+-..+-...+ ..+....++.+ ..+--+.++++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~---~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLA---IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhc---ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 899999999999999875 2236667766666555 57777666554444332 22233333332 344456777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHH--HHHHHhCC--CHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCC
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSL--INGLCVDG--KLDEAVALRDEMMASGLKP---------NVVTSNALINGFCKKKL 344 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~ 344 (537)
...... .. +..+|... .....+.. +.-.-.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 666655 21 23333332 22222221 1111112222222211111 01223333333222111
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNS-MLDRGVLP-----DVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a 418 (537)
......++..-......-+..-|..-+..-....+..+-+--+++ +......| -..+|....+...++|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111000000000000111222222211111111111111111 11111111 245777788888888888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+-...+.+ . +..+.-........|+...|+.++++.++
T Consensus 1690 ~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1690 QNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88777776654 2 34556666778888888888888888875
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.48 E-value=7.2 Score=28.63 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444445555555655566666666666666666665555543
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.24 E-value=0.52 Score=37.90 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555544333345555555555555555455544444
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.15 E-value=8.4 Score=32.87 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG--MRAGLVTYNILVGA 443 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 443 (537)
+.+..++.+.+.+...+|+...++-++.++. |...-..+++.++-.|++++|..-++-.-... ..+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4456677888899999999999888887655 77788889999999999999988777665542 23345667766655
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.11 E-value=9.2 Score=27.78 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+.+-++.+......|++.+..+.+++|.+.+++..|.++++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555555554444
No 326
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.10 E-value=6.4 Score=28.78 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.2
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPN-----IVTYNVLIKGFCQKGKLEDANGLLNELLEKG-LIPNQTTYQIVREEM 517 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~ 517 (537)
.+.|++..|.+.+.+..+.......+. ....-.+.......|++++|...+++.++.- -.-|..+....+..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 456777777777766665443333333 2233334555677888999888888887531 112455555444433
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.83 E-value=52 Score=34.07 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..+...|..+...|++++|-...-.|.. .+..-|..-+..+...++...... -+..-....+...|..++..+
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHH
Confidence 5666788889999999999988888874 366677777777777666544333 233333335677788888777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 197 CKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
.. .+. ...++...+. +...|..+.-.-+. ..++ .++ .. +...-..|+..|...+++.
T Consensus 466 L~-~~~---~~F~e~i~~W----p~~Lys~l~iisa~---~~q~----------~q~-Se-~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 466 LA-SDV---KGFLELIKEW----PGHLYSVLTIISAT---EPQI----------KQN-SE-STALLEVLAHLYLYDNKYE 522 (846)
T ss_pred HH-HHH---HHHHHHHHhC----ChhhhhhhHHHhhc---chHH----------Hhh-cc-chhHHHHHHHHHHHccChH
Confidence 66 222 2222222221 22222222111111 1111 111 11 1122233778888888888
Q ss_pred HHHHHHHHHHh
Q 047648 277 AAMKVFEEMGS 287 (537)
Q Consensus 277 ~a~~~~~~~~~ 287 (537)
.|..++-..++
T Consensus 523 ~Al~~ylklk~ 533 (846)
T KOG2066|consen 523 KALPIYLKLQD 533 (846)
T ss_pred HHHHHHHhccC
Confidence 88888776654
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.49 E-value=8.3 Score=28.01 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
++.+-++.+...++-|++.+..+.+.+|.+.+++..|+++|+.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555544
No 329
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.31 E-value=24 Score=29.80 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPN-----VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG 378 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 378 (537)
+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--.+..+.++. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 445566666666666555531 211 223344444555566666666655555554322 1122222234555666
Q ss_pred ChHHHHHHHHHHHhC
Q 047648 379 RMEDAFAMRNSMLDR 393 (537)
Q Consensus 379 ~~~~A~~~~~~~~~~ 393 (537)
++++|+.-|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.92 E-value=19 Score=35.77 Aligned_cols=131 Identities=19% Similarity=0.140 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
-+.+..-+..+|-.++|+++- +|+.. -.+...+.|+++.|..+..+.. +..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555566666666665442 22211 1234556788888877665532 56678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.| + .|...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHH
Confidence 8888888888877654 3456666677777766666666655555 2 23344567788888888888
Q ss_pred HHHH
Q 047648 457 LDEM 460 (537)
Q Consensus 457 ~~~~ 460 (537)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.39 E-value=1.7 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555556666666666666655
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.13 E-value=4 Score=37.16 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
.+-|.+.|.+++|+..|...... .| +++++..-..+|.+..++..|..-....+..+-. -...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 35688999999999999987765 34 8888888899999999999888877776654211 23456666666666777
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 047648 415 VEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~ 433 (537)
..+|.+-++..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 88888888877775 455
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.53 E-value=11 Score=27.80 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
.+-++.+......|++....+.+++|.+.+++..|.++++.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344333444444444444444444444444444444443
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.50 E-value=37 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
++.....|..+|.+.+|..+.++.+..++- +...+..+++.++..|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334445555566666666665555554322 44555555556666665555555544443
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.15 E-value=24 Score=28.22 Aligned_cols=53 Identities=19% Similarity=0.019 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..++++++..+++.|.-..+. ....-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777777654332 12222222334566777777777777776653
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.15 E-value=9.5 Score=24.28 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
.+.-++.+.|++++|.+..+.+++ +.|+..-...+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 344566777777777777777777 5566655444433
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.13 E-value=2.3 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 047648 476 NVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~ 496 (537)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666655544
No 338
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.07 E-value=48 Score=30.98 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR---EGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~ 422 (537)
+.-+.++++..+.++ .+...+..++..+.+..+.+...+.|++++...+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 444556666655543 25556666666666666666667777777766443 56666666655443 22345555555
Q ss_pred HHHHHC------CC------CCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 423 NELVNN------GM------RAG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 423 ~~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+.++. +. .++ ..++..+...+..+|..+.|..+++.++++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444321 10 001 1233444455677888999999998888754
No 339
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.04 E-value=42 Score=30.31 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHhh-CCCCCChhhHHHHHHHHHh-CC-ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 131 KPHLGFEAFKRAGD-YGLKSSVLSCNQLLRALVK-EG-KFEDVEYVYKEMKR-RRIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 131 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
...+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555553221 1233455555555655554 22 12222333333332 234556666677777777777777777
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHh
Q 047648 207 DIMEDMKSL-GVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-----MVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~~~~ 270 (537)
++++..... +...|...|..+|..... .|+..-..+++.+ +.+.|+..+...-.++-..+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~---sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVE---SGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHH---cCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 777766554 445567777777777777 6666666665554 345555555555555444443
No 340
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.73 E-value=35 Score=30.14 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.|.+.|+++.++.....+|...++-.++- .|-..|+.++|.++.++..+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4678888888877655545665444433332 234589999999888776653
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.51 E-value=34 Score=28.85 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC--LIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILV 441 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 441 (537)
.|..++.... .+.+ +.....+.+...+......++.. +...+...+++++|..-++.........+ ..+--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444433 2333 44444555555432222223322 33456778888888888887765311111 12223455
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
......|.+++|+..++...+ . .-.......-...+...|+-++|..-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~---~--~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKE---E--SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhcccc---c--cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 667788888888888876642 0 0122334455577888888888888888888865
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.35 E-value=32 Score=28.55 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhc
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNT---LIDAYCKEGRMEDAFAMRNSMLDR-----GVLPD-VSTYNCLIAGLSRE 412 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~ 412 (537)
++.|.+..+.....++. |...++. .+.-+.+..+..++.+++++.+.+ .+.|+ ..++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 55666666665554433 4444333 333344444444454444444322 13344 45777777777544
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.05 E-value=0.68 Score=37.21 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 55666667777777777777776554556677777777777777667666666511 11222345555666666
Q ss_pred hhHHHHHHHHH
Q 047648 202 LNKASDIMEDM 212 (537)
Q Consensus 202 ~~~a~~~~~~~ 212 (537)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 344
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.26 E-value=43 Score=30.06 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=45.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH----HhCCCCCChhhHHHH-HHHHHhCCCHHHHHHHHHHHHH---c-CCCCCHHHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEM----GSHGIAAGVVTYNSL-INGLCVDGKLDEAVALRDEMMA---S-GLKPNVVTSN 333 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~---~-~~~~~~~~~~ 333 (537)
.-++..+.+.|.+.+|+.+...+ .+-+-.++..+...+ -..|....+..++..-+-.... . -+||....-.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 45778888999999998876554 333334443332222 1233333343333333322221 1 1233333222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHH
Q 047648 334 ALING--FCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 334 ~ll~~--~~~~~~~~~a~~~~~~~~~ 357 (537)
-++++ .|...++..|...|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 23322 2344566667766666544
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.15 E-value=17 Score=31.09 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--VLPDVSTYNCLIAG 408 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~ 408 (537)
|.+.-++.+.+.+.+.+++.....-.+..+. +...-..++..++-.|+|++|..-++..-... ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567788888999999998887776444 66666778899999999999998887776542 23345567666654
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.00 E-value=4 Score=21.61 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555566666666666666666554
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.87 E-value=3.9 Score=22.39 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445555566666666666666554
No 348
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.27 E-value=78 Score=31.74 Aligned_cols=184 Identities=12% Similarity=-0.011 Sum_probs=109.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+..+|..-+.--...|+++.+.-+|+...-. +..-...|-..+......|+.+-|..++....+-..+..+ ....+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~-~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP-IIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-HHHHHHH
Confidence 4566777777778889999998888887642 1222344444455555558888888877776654333222 2222222
Q ss_pred H-HHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCChHHHHHHHH-----
Q 047648 373 A-YCKEGRMEDAFAMRNSMLDRGVLPDVS-TYNCLIAGLSREGNVEGVRN---IMNELVNNGMRAGLVTYNILVG----- 442 (537)
Q Consensus 373 ~-~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~----- 442 (537)
. .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.. ++...... .-+......+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHH
Confidence 2 234679999999999988763 4432 22223344456777777773 33322221 222222222222
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
.+.-.++.+.|..++.++.+ ..+++...|..+++.+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~----~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEAND----ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhh----cCCccHHHHHHHHHHHHhCC
Confidence 23446788899999988864 34667778888887766554
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.16 E-value=5.9 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=12.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.75 E-value=34 Score=27.38 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 341 KKKLVEKARVLFDDISEQGLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
..++.+++..+++.+.-..+. +...++. ...+...|+|++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355556666665555443221 1111222 22344556666666666665554
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.67 E-value=17 Score=25.37 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChHHHHHH
Q 047648 411 REGNVEGVRNIMNELVNNGMRAG--LVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
...+.++|+..|...++.-..+. -.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444321111 13344444555555555444443
No 352
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.84 E-value=94 Score=31.91 Aligned_cols=27 Identities=7% Similarity=-0.111 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAG 143 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 143 (537)
+.-|+ .+..++-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 56676 6777788888999988885544
No 353
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.83 E-value=78 Score=30.96 Aligned_cols=82 Identities=11% Similarity=-0.023 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----chhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFK----MEKEKKWPN----------IVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
||.+...+.+.|.+..+..+|.++++ .-..|+.|. -...-...-.|...|++-.|.+.|.+....
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v- 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV- 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-
Confidence 35555555666666666666666553 001122221 111122233566677777777777766653
Q ss_pred CCCCHHhHHHHHHHHHh
Q 047648 503 LIPNQTTYQIVREEMME 519 (537)
Q Consensus 503 ~~p~~~~~~~l~~~~~~ 519 (537)
+.-++..|-.+.++|..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 44566677776666553
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.47 E-value=95 Score=31.75 Aligned_cols=245 Identities=15% Similarity=0.089 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc--CCCCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcc
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCK--KGGIGKMYKADAVFKDMVE-------NGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~ 272 (537)
...+.++++...+.| +...-..+..++.. .+...+.+.|+..++...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456778888777765 33333333333222 2236788888888888766 44 233455566666653
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 047648 273 E-----NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV-DGKLDEAVALRDEMMASGLKPNVVTSNALINGFC----KK 342 (537)
Q Consensus 273 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 342 (537)
. +.+.|..+|...-+.|.+ +.......+..... ..+...|.++|...-+.|. + ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~--~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-I--LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-h--HHHHHHHHHHHhCCCcC
Confidence 2 667788888888777633 43333222222222 2457789999988888773 2 22222222222 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----h----cCC
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS----R----EGN 414 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~----~~~ 414 (537)
.+...|..++.+..+.|. |....-...+..+.. ++++.+.-.+..+.+.|.. ...+-...+..-. . ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 467888888888888762 222222222223333 7777777777766666544 2222222221111 1 124
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKD----GKSKKAVSLLDEMFK 462 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~ 462 (537)
.+.+...+.+....| +......+.+.|... .+++.|...+..+..
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~ 503 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE 503 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH
Confidence 455666666665544 445555565555443 346777777776653
No 355
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.47 E-value=42 Score=30.09 Aligned_cols=87 Identities=5% Similarity=-0.088 Sum_probs=39.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK---- 341 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 341 (537)
|.++...++|.++..+.-+.-+.--+..+.....-|-.|.+.+++..+.++-.......-.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3445555555555544333322111112223333344455666666666555555543222222335444444433
Q ss_pred -cCCHHHHHHHH
Q 047648 342 -KKLVEKARVLF 352 (537)
Q Consensus 342 -~~~~~~a~~~~ 352 (537)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45555555554
No 356
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=75.35 E-value=81 Score=30.42 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
..|+.-|...|+..+|...+++.- -.+.....++.+++.+.-+.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLg----mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELG----MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456667777888888888887761 2223345667777777777777666666666655443
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.26 E-value=1.2e+02 Score=32.26 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=122.9
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHH-HHHHhCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 047648 270 CKDENISAAMKVFEEMGSHGIAAGV-------VTYNSLI-NGLCVDGKLDEAVALRDEMMAS----GLKPNVVTSNALIN 337 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~ll~ 337 (537)
....++++|..++.+....-..|+. ..|+.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467899999988887654222221 1233332 2234678899999888877664 12334566777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh---HHHHHH--HHHHhcCC--hHHHHHHHHHHHhCC--CC----CCHHHHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVI---TYNTLI--DAYCKEGR--MEDAFAMRNSMLDRG--VL----PDVSTYNC 404 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~--~~~A~~~~~~~~~~~--~~----p~~~~~~~ 404 (537)
+..-.|++++|..+.....+..-.-+.. .|..+. ..+...|+ +.+....+....... -. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887765531122332 233332 23445663 333333444333221 11 12234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----HHCCCCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC-CCCHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNEL----VNNGMRAGLV--TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK-WPNIVTYNV 477 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~ 477 (537)
+..++.+ .+.+..-...- ......|-.. .+..|+......|++++|...+.++......+. .++..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555554 33332222222 2222112122 223677888899999999999999887554442 223333233
Q ss_pred HHHH--HHhcCCHHHHHHHHHH
Q 047648 478 LIKG--FCQKGKLEDANGLLNE 497 (537)
Q Consensus 478 l~~~--~~~~g~~~~A~~~~~~ 497 (537)
.+.. -...|+..++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 3332 3447788877776665
No 358
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.47 E-value=81 Score=30.03 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC---------CCCCC
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYG--LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR---------RIELN 185 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 185 (537)
..+.-+...|..+|+++.|++.|-+.++.- .+.....|-.+|..-.-.|+|........+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 466678889999999999999999976541 1223445666777777788888877777666543 12333
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 047648 186 LDSFNFVLNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 211 (537)
...+..+.... .+++..|.+.|-.
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 33344444333 3366666555543
No 359
>PRK09687 putative lyase; Provisional
Probab=74.47 E-value=69 Score=29.23 Aligned_cols=235 Identities=12% Similarity=0.011 Sum_probs=112.2
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCChhhH
Q 047648 149 SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKL----NKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
+|.......+.++...|.. ++...+..+.+. +|...-...+.+++..|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4555555566666666643 333333333332 3555555666667777653 3566666655333 3454444
Q ss_pred HHHHHHHhcCCCCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 225 NILIDGYCKKGGIG--KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302 (537)
Q Consensus 225 ~~ll~~~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (537)
...+.++...+..+ ....+...+...... ++..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 44444444411111 112233333333322 344555556666666665 3455555555442 23334444444
Q ss_pred HHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 047648 303 GLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME 381 (537)
Q Consensus 303 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 381 (537)
++.+.+ ..+.+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 444432 23345555555553 34555666666666666663 3444443333331 2 223455556666664
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
+|...+..+.+.. ||..+-...+.+
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHH
Confidence 4666666655432 244444433333
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.69 E-value=1.2e+02 Score=31.55 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHh---
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG-LSPSVITYNTLIDAYCK--- 376 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 376 (537)
...+.-.|+++.|++.+.+ ..+...|.+.+...+..|.-.+-.+... ..+.... -.|...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4556678999999998877 2223455555555555443322222211 2222211 11122557778888875
Q ss_pred cCChHHHHHHHHHHHhC
Q 047648 377 EGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~ 393 (537)
..++.+|.+.+-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45778888888777654
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.59 E-value=54 Score=29.44 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-----
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC----- 375 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 375 (537)
|.+++..+++.+++...-+.-+..-+....+....|-.|.+.+.+..+.++-..-...--.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 688899999999887665554432233456677777889999999999888877766422223445777776665
Q ss_pred hcCChHHHHHHH
Q 047648 376 KEGRMEDAFAMR 387 (537)
Q Consensus 376 ~~g~~~~A~~~~ 387 (537)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 479999999877
No 362
>PRK10941 hypothetical protein; Provisional
Probab=72.36 E-value=71 Score=28.87 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=23.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+|.+.++++.|+.+.+.++.+. +.++.-+.--.-.|.+.|.+..|..-++..++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~----P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFD----PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444444444444444444322 12333333333444444444444444444443
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.69 E-value=74 Score=28.35 Aligned_cols=208 Identities=12% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC-
Q 047648 254 GILPNEVTFNTLIDG-FCKDENISAAMKVFEEMGSHGIAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMAS---GL- 325 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~- 325 (537)
+-.||+..-|..-.. -.+..++++|+.-|++..+...... -.....++....+.+++++..+.+.++..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345555443332211 2244578888888888776432222 234455678888888888888888877531 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---
Q 047648 326 -KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ-----GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL--- 396 (537)
Q Consensus 326 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 396 (537)
.-+..+.+++++..+...+.+-...+++.-.+. +-...-.+-..|...|...|.+.+..+++.++...-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123455677777666666666666665543321 11111122345666677777777777777776543111
Q ss_pred -CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHH----HHHHhcCChHHHHHHHHHHH
Q 047648 397 -PD-------VSTYNCLIAGLSREGNVEGVRNIMNELVNN-GMRAGLVTYNILV----GALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 397 -p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 461 (537)
.| ...|..-++.|....+-.....++++.+.. .--|.+.+...+- .+..+.|++++|..-|-++.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 01 235555666666666666677777766543 1234444443322 23455667766665444443
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.65 E-value=74 Score=28.34 Aligned_cols=269 Identities=16% Similarity=0.187 Sum_probs=163.9
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHHHhC---
Q 047648 215 LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV---TFNTLIDGFCKDENISAAMKVFEEMGSH--- 288 (537)
Q Consensus 215 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 288 (537)
.+-.||+..-|..-+.-.-. ....++|+.-|.+..+........ +...++....+.|++++....|.++..-
T Consensus 20 s~sEpdVDlENQYYnsK~l~--e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLK--EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cCCCCCcchHhhhhcccccc--ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 34567776655544332221 468899999999988754332333 3456788899999999999999988531
Q ss_pred CC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 047648 289 GI--AAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKPNV----VTSNALINGFCKKKLVEKARVLFDDISEQ--- 358 (537)
Q Consensus 289 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 358 (537)
.+ .-+..+.+.++.....+.+.+.-.++++.-.+. .-..+. .|-.-+...|...+.+.+..+++.++...
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 224566788888777777777776666654331 001122 23356677788888999999999888654
Q ss_pred --CCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHH
Q 047648 359 --GLS------PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGL-----SREGNVEGVRNIMNE 424 (537)
Q Consensus 359 --~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~ 424 (537)
|-. .-..+|..=+..|....+-.....++++.+.. ..-|.+.... +++-| .+.|++++|-.-|-+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHH
Confidence 211 01346777788888888888888888877643 3345555444 33333 467888888765544
Q ss_pred HHH----CCCCCC---hHHHHHHHHHHHhcCC----hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 425 LVN----NGMRAG---LVTYNILVGALCKDGK----SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 425 ~~~----~~~~~~---~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
..+ .| .|. ..-|..|..++.+.|- .++| .+-...|.....+.++.+|.. ++..+..+
T Consensus 257 AFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQEA----------KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~ 324 (440)
T KOG1464|consen 257 AFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQEA----------KPYKNDPEILAMTNLVAAYQN-NDIIEFER 324 (440)
T ss_pred HHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCccccc----------CCCCCCHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 443 24 232 2335556666666652 1111 122234566677788877754 45555555
Q ss_pred HHHHH
Q 047648 494 LLNEL 498 (537)
Q Consensus 494 ~~~~~ 498 (537)
+++.-
T Consensus 325 Il~~~ 329 (440)
T KOG1464|consen 325 ILKSN 329 (440)
T ss_pred HHHhh
Confidence 54443
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=70.70 E-value=1e+02 Score=29.59 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGL-CVDGKLDEAVALRDEMMASGLKPNV----VTSNALINGFCKKKLVE 346 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~ 346 (537)
.|+..++.+.+..+.....++....|-.|+.+- ....++..|+++|+...-. .|.+ .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 466666666666666555555555666655543 3344566666666665442 2322 22333334445555555
Q ss_pred HHHHHHHHHH
Q 047648 347 KARVLFDDIS 356 (537)
Q Consensus 347 ~a~~~~~~~~ 356 (537)
++..+-....
T Consensus 203 rf~~la~~Y~ 212 (421)
T PRK12798 203 KFEALARNYL 212 (421)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.50 E-value=14 Score=31.39 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.7
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 047648 38 NSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN 92 (537)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~ 92 (537)
....+++....+.+|+.+.....|++.+|..++.++...|+.++|......+..-
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777788888998887778899999999999999999999999998887765
No 367
>PRK10941 hypothetical protein; Provisional
Probab=70.35 E-value=83 Score=28.46 Aligned_cols=81 Identities=15% Similarity=-0.036 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
..+.+-.+|.+.++++.|.++.+.+.... |.++.-+.--.-.|.+.|.+..|..-++..++..+ -.|+.......+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P--~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP--EDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC--CchhHHHHHHHHH
Confidence 45666678899999999999999999975 56677777778889999999999999999987443 3566666666555
Q ss_pred HHHh
Q 047648 481 GFCQ 484 (537)
Q Consensus 481 ~~~~ 484 (537)
.+..
T Consensus 260 ~l~~ 263 (269)
T PRK10941 260 SIEQ 263 (269)
T ss_pred HHhh
Confidence 5443
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.70 E-value=91 Score=28.56 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=82.9
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK----A 199 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 199 (537)
..+++..|.+.+......+ +......+...+.. ..+...|...|....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4556667777777766533 22333333333332 2346778888887766653 3334445555544 3
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG----GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK---- 271 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 271 (537)
.+..+|...|++..+.|..+...+...+...|.... -.-+...|...+.+.-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477888888888888774432222334444444310 0112235677777766655 33344444444432
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 047648 272 DENISAAMKVFEEMGSHG 289 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~ 289 (537)
..+.++|..+|....+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 346777777777776665
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.56 E-value=24 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888889999999999888876
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.97 E-value=24 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREE 516 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (537)
....+.|-.+++..++++|.+.|+..+...+..+++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445677888888999999999988888888877653
No 371
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.13 E-value=85 Score=27.26 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCC-------hHHHHHHHHHHHHchhcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 437 YNILVGALCKDGK-------SKKAVSLLDEMFKMEKEKKWP-N-IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 437 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 504 (537)
+..+.+.|-..|+ ...|.+.|+++.+-+..+..+ + ....-.+.....+.|+.++|.+.|.++...+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3344445555554 234555555555432221111 2 223334445566778888888888888775433
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.12 E-value=40 Score=28.67 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 469 WPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.|++.+|..++.++...|+.++|.+..+++.. +-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 57777888888888888888888888887776 556
No 373
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.83 E-value=65 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHH
Q 047648 154 CNQLLRALVKEGKFEDVEYVYKEM 177 (537)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~ 177 (537)
.|.++.-....+++...+.+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 455555555555565555555555
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.64 E-value=24 Score=24.60 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=29.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPD-V-STYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
...+.++|+..|...++.-..|. . .++..++++|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776533322 1 25566677777777777766553
No 375
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.97 E-value=9.1 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=20.6
Q ss_pred HHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 047648 127 VKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRA 160 (537)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (537)
-..|.-..|..+|++|++.|.+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3445666677777777777777664 5555543
No 376
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.41 E-value=1.4e+02 Score=28.96 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHcCCchHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCh
Q 047648 127 VKNMKPHLGFEAFKRAGDYGLKSSVLS--CNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD--SFNFVLNGLCKAGKL 202 (537)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 202 (537)
++.|+.+- ++.+.+.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34455443 333334454444322 2233445556666653 33444455444322 112334556677887
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCCHHHHHH
Q 047648 203 NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVT--FNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~ 280 (537)
+.+..+++.-....-..+..-.+.+..+ +. .|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.-
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A-~~---~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLA-TI---LKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHH-HH---hCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 7766555432111000111112223323 23 3554 35555566666554321 1233444556677655444
Q ss_pred HHHHHHhCCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHH
Q 047648 281 VFEEMGSHGIAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT---SNALINGFCKKKLVEKARVLFDD 354 (537)
Q Consensus 281 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~ 354 (537)
++ +.|..++ ....+. +...+..|+.+- .+.+.+.|..++... ....+...+..|+.+- .+.
T Consensus 154 Ll----~~g~~~~~~d~~g~Tp-L~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~ 220 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCTP-LIIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRL 220 (413)
T ss_pred HH----hcCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHH
Confidence 43 3333222 222222 233445566543 344555665554322 1234444455566543 344
Q ss_pred HHHcCCCCCH
Q 047648 355 ISEQGLSPSV 364 (537)
Q Consensus 355 ~~~~~~~~~~ 364 (537)
+.+.|..++.
T Consensus 221 Ll~~gad~n~ 230 (413)
T PHA02875 221 FIKRGADCNI 230 (413)
T ss_pred HHHCCcCcch
Confidence 4556665553
No 377
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.36 E-value=51 Score=32.92 Aligned_cols=87 Identities=18% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAM 386 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 386 (537)
.|+...|...+............+....+.....+.|....|..++.+..... ...+.++..+.++|....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555444432211112233334444444444555555554444332 12334444555555555555555555
Q ss_pred HHHHHhCC
Q 047648 387 RNSMLDRG 394 (537)
Q Consensus 387 ~~~~~~~~ 394 (537)
|++..+..
T Consensus 699 ~~~a~~~~ 706 (886)
T KOG4507|consen 699 FRQALKLT 706 (886)
T ss_pred HHHHHhcC
Confidence 55555543
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.34 E-value=58 Score=32.56 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN 253 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 253 (537)
|.....+.|-..+|..++.+.+... ...+-++..+.+++.. ..+.+.|++.|++..+.
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~---l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLA---LKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHH---HhhhHHHHHHHHHHHhc
Confidence 3334444444444444444444332 1233334444444444 44555555555554443
No 379
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.50 E-value=1.6e+02 Score=29.10 Aligned_cols=419 Identities=14% Similarity=0.127 Sum_probs=204.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 43 PVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
|..+..+|+.+..+ +++|...+...++-+-+.+.+.+...++..++.- +|.++.+|-.-
T Consensus 87 ~~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-------------------Hp~~~dLWI~a 145 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-------------------HPNNPDLWIYA 145 (568)
T ss_pred HHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-------------------CCCCchhHHhh
Confidence 33455556665554 7778888888888887777777777777766654 25555555433
Q ss_pred H-HHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----C-------C-ChhHH-HHHHHHHH-hCCCCCCHH
Q 047648 123 M-LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----E-------G-KFEDV-EYVYKEMK-RRRIELNLD 187 (537)
Q Consensus 123 ~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------~-~~~~a-~~~~~~~~-~~~~~~~~~ 187 (537)
. .-|-.+.+.+.|..+|.+-++.+ +.+...|....+.-.. . | +..+- .++-+.-. .....++..
T Consensus 146 A~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~ 224 (568)
T KOG2396|consen 146 AKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVD 224 (568)
T ss_pred hhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 3 34444555899999999988864 3344444443332110 0 0 00000 00000000 000011111
Q ss_pred HHHH---HH--HHHHhcCChhHHH-HHHHHHHhCCCCCChhhHHHH----HHHHhcCCC-----------CC-CHHHHHH
Q 047648 188 SFNF---VL--NGLCKAGKLNKAS-DIMEDMKSLGVSPKVVTYNIL----IDGYCKKGG-----------IG-KMYKADA 245 (537)
Q Consensus 188 ~~~~---l~--~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~-----------~~-~~~~a~~ 245 (537)
.-.. .+ ...-......+.. .+.+.+... .+-++.+|.-+ +.++.+... .| ..+....
T Consensus 225 ~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~ 303 (568)
T KOG2396|consen 225 IIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCA 303 (568)
T ss_pred hhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHH
Confidence 1000 00 0111101111111 122223222 23344444332 222222100 01 1112234
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhCCCHHHHHHHH
Q 047648 246 VFKDMVENGILPNEVTFNTLIDGFCKD------ENISAAMKVFEEMGSHG-IAA-GVVTYNSLINGLCVDGKLDEAVALR 317 (537)
Q Consensus 246 ~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 317 (537)
++++..+- .|+...|+..|..|... ..+.....+|+.....+ ..+ ....|..+...++......+ .-
T Consensus 304 v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~---~a 378 (568)
T KOG2396|consen 304 VYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE---VA 378 (568)
T ss_pred HHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH---HH
Confidence 55554432 34555555555554432 24455556666554432 222 34455555555555443322 22
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-hHHHH--HHHHHHHh
Q 047648 318 DEMMASGLKPNVVTSNALINGFCKK-KLVEK-ARVLFDDISEQGLSPSVITYNTLIDAYCKEGR-MEDAF--AMRNSMLD 392 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~--~~~~~~~~ 392 (537)
..+...++..+...|..-+...... .++.- -...|..+...-..+....|+... .|+ ..... .++.....
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 2223233344555555444444321 12221 122233333332222333343333 122 11111 12222223
Q ss_pred CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH--hcCChHHHHHHHHHHHHchhcCCC
Q 047648 393 RGVLPDVSTY-NCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC--KDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 393 ~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
. ..|+..++ +.++..+...|-.++|...+..+... .+|+...|..+++.-. ..-+..-++++|+.+.. .-|
T Consensus 454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~--~fg-- 527 (568)
T KOG2396|consen 454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR--EFG-- 527 (568)
T ss_pred h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH--HhC--
Confidence 2 33455444 56777788889999999999999886 3677777777776432 22237888889988875 344
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|+..|.-.+.-=...|+.+.+-.++.++.+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6788888888777788998888888877665
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.23 E-value=2.1e+02 Score=29.99 Aligned_cols=324 Identities=9% Similarity=-0.012 Sum_probs=158.0
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH--HHHHHHHHHhCCCCCCHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED--VEYVYKEMKRRRIELNLDSFN 190 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 190 (537)
+.+.......+.+....|+.++|.+..+.+-..| ......++.++..+.+.|.+.. ..+-++.....| +...-.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~ 201 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVT 201 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666678888889999888888888877665 3456788888888887776543 333333333332 222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---------CCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCH-
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKS---------LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-ILPNE- 259 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~- 259 (537)
.+...+. .+.....+.+..+.. ..+.|+...-..++-++.+.. ..+.+.|...+....... ..+..
T Consensus 202 ~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rla-r~d~~~A~~~~~~~~~~~~~~~~~~ 278 (644)
T PRK11619 202 YLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVA-RQDAENARLMIPSLVRAQKLNEDQR 278 (644)
T ss_pred HHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHH-HhCHHHHHHHHHHHHHhcCCCHHHH
Confidence 2222220 000100011111110 001122211111111222211 245577777887764432 22221
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 260 -VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 260 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
..+..+.......+..+++...++...... .+......-+....+.++++.+...+..|.... .-...-.--+..+
T Consensus 279 ~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa 355 (644)
T PRK11619 279 QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADL 355 (644)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHH
Confidence 223333333333322556666666544332 244444555555667888888888887775432 2233444455666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED-AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
+...|+.++|...|..+... ...|..+..- +.|..-. ....... ....+..++ -...+..+...|....
T Consensus 356 ~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~--~Lg~~~~~~~~~~~~-~~~~~~~~~--~~~ra~~L~~~g~~~~ 425 (644)
T PRK11619 356 LLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ--RLGEEYPLKIDKAPK-PDSALTQGP--EMARVRELMYWNMDNT 425 (644)
T ss_pred HHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--HcCCCCCCCCCCCCc-hhhhhccCh--HHHHHHHHHHCCCHHH
Confidence 66678888888888887431 1123322221 1221100 0000000 000000000 1122334556677777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
|...+..+... .+......+.....+.|.++.++.....
T Consensus 426 a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 426 ARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 77777777663 2344455555556667777766665543
No 381
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.78 E-value=24 Score=34.17 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=52.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHH-HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTY-NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (537)
...+.++.|..++.++++. .||...| ..=..++.+.+++..|+.=+.++++.. +-....|..-..++.+.+++
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD----PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC----chhhheeeeccHHHHhHHHH
Confidence 4455566666666666654 3433332 222355666666666666666555432 11122233333444455556
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 489 EDANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
.+|...|+.... +.|+..-....+..|..
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 666666666555 55666666665554444
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.03 E-value=62 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
-.+.......|++++|.+.+++++++..
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3355567777888888888888876443
No 383
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.98 E-value=1.4e+02 Score=27.73 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 345 VEKARVLFDDISEQGL----SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
.+.|.+.|+.....+. ..++.....+.....+.|..+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677778887776421 345555666666677777766655555555543 367777888888888899999899
Q ss_pred HHHHHHHCC-CCCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 421 IMNELVNNG-MRAGLVTYNILVGALCKDGKS--KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 421 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+++.+...+ +++. . ...++.++...+.. +.+.+.+.+-.+.-......+......++..+...-..++-.+-+++
T Consensus 223 ~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999888854 3333 2 34444455434443 67777765543322222233322444555544433333333334444
Q ss_pred HH
Q 047648 498 LL 499 (537)
Q Consensus 498 ~~ 499 (537)
+.
T Consensus 301 f~ 302 (324)
T PF11838_consen 301 FF 302 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.82 E-value=1.3e+02 Score=27.21 Aligned_cols=94 Identities=22% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCChHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSML----DRGVLPDVSTYNCL-IAGLSREGNVEGVRNIMNELVNN----GMRAGLVTYNI 439 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 439 (537)
.++..+.+.|++.+|+.+...+. +..-+|+..+...+ -.+|-...++.++..-+-..+.. -+||....-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 45666777788877777655443 32333333322211 12333334444433333322211 23444444444
Q ss_pred HHHHH--HhcCChHHHHHHHHHHHH
Q 047648 440 LVGAL--CKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 440 l~~~~--~~~g~~~~A~~~~~~~~~ 462 (537)
|+.+. |...++..|-..|-++.+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 44433 334456677777766654
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.38 E-value=69 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.+...++.|++.+..+-++++.+.+++..|.++|+-+.
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.17 E-value=84 Score=24.81 Aligned_cols=71 Identities=7% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL-PNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
.++..+--.+.-++.++.+..+..+.+.+++.+.+...+ -.......|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344445455555666655566666677777776652211 12233344555666777777777777766654
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.13 E-value=74 Score=24.66 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
..+-++.+..-++.|++.....-+++|.+-+++..|.++|+-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3445555566667777777777788888888888888887776654
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.44 E-value=1.2e+02 Score=26.53 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=11.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 047648 410 SREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~ 429 (537)
+..+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666665543
No 389
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.29 E-value=2.3e+02 Score=29.62 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 479 IKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
+.+-.-++++..|++.-+.|.+ ++|-..-+...+
T Consensus 373 ~~asVLAnd~~kaiqAae~mfK--Lk~P~WYLkS~m 406 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFK--LKPPVWYLKSTM 406 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhc--cCCceehHHHHH
Confidence 3444557889999999988887 555554444433
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.17 E-value=1.3e+02 Score=26.57 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=42.1
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGV-VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS-NALINGFCKKKLVE 346 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~ 346 (537)
|.....++.|+..|.+.+.. .|+. .-|+.-+.++.+..+++.+..--.+.++ +.|+..-- ..+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44455566666665555543 3444 3344455556666666666555444444 23443322 22333344455566
Q ss_pred HHHHHHHHH
Q 047648 347 KARVLFDDI 355 (537)
Q Consensus 347 ~a~~~~~~~ 355 (537)
.|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666665554
No 391
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.47 E-value=90 Score=24.64 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.++..+--.+.+++.+..+ ..+.+.+++++.+ ...........-.|.-++.+.++++.++++.+.+++ ..||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 3444455555555555443 4455566666653 111111233334445566667777777777777766 34443
No 392
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.86 E-value=4.2e+02 Score=32.15 Aligned_cols=88 Identities=7% Similarity=0.040 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhc
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV-LNGLCKA 199 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 199 (537)
..|......|++..|...|+++...+ ++....++.++......|.++.+....+-..... .+....++.+ +.+--+.
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhh
Confidence 34555667899999999999998865 3346778888888888888888877666655442 2233344332 3344566
Q ss_pred CChhHHHHHHH
Q 047648 200 GKLNKASDIME 210 (537)
Q Consensus 200 g~~~~a~~~~~ 210 (537)
++++.......
T Consensus 1532 ~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1532 SQWDLLESYLS 1542 (2382)
T ss_pred cchhhhhhhhh
Confidence 77776666654
No 393
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=57.50 E-value=33 Score=20.02 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
+|..|...-...+++++|.+=|++++++...-
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 45666666667777777777777766654433
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.06 E-value=2.7e+02 Score=29.76 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=124.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh-------hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVV-------TYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GILPNEVTFN 263 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~ 263 (537)
...-..++++|..++.++...-..|+.. .++.+-...... .|+.++|.++.+..... -..+....+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~--~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN--RGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 3445789999999999887642222221 344444333332 68889988887776653 2334566677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHhCCCHHH--HHHHHHHHHHc---CCC---CCHH
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI-----NGLCVDGKLDE--AVALRDEMMAS---GLK---PNVV 330 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~--A~~~~~~~~~~---~~~---~~~~ 330 (537)
.+..+..-.|++++|..+..+..+..-.-++..+..+. ..+..+|+... ....|...... ..+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 78888888999999999888766532222333333222 34556674332 23333332221 001 1223
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHH
Q 047648 331 TSNALINGFCKK-KLVEKARVLFDDISEQGLSPSVITY--NTLIDAYCKEGRMEDAFAMRNSMLDRGVL----PDVSTYN 403 (537)
Q Consensus 331 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~ 403 (537)
++..++.++.+. +...++..-+.........|-...+ ..|+..+...|+.++|...++++...... ++..+-.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444455555541 1222222222222222222222222 36778888899999999999988764322 2322222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHH
Q 047648 404 CLIA--GLSREGNVEGVRNIMNE 424 (537)
Q Consensus 404 ~l~~--~~~~~~~~~~a~~~~~~ 424 (537)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 23456777777766655
No 395
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.88 E-value=2.2e+02 Score=28.69 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-hcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC-KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
...+.|-+..|.++.+-+......-|+.....+|+.|+ ++.+++=-++++++...+.+-...||...-..++..|.+..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 34455555556555555555443334444445554443 34445555555555443333333455444444444444443
Q ss_pred C
Q 047648 487 K 487 (537)
Q Consensus 487 ~ 487 (537)
.
T Consensus 431 ~ 431 (665)
T KOG2422|consen 431 E 431 (665)
T ss_pred C
Confidence 3
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.85 E-value=1e+02 Score=24.74 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCC--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKK--WPNIVTYNVLIKGFCQKGK-LEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
+.++.-....++..-.+.+++.+.-+..... ..+...|..++.+.....- ---+..+|+-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455444555555555555555532221111 2356678888888865555 445677788888878888888888888
Q ss_pred HHHHhc
Q 047648 515 EEMMEK 520 (537)
Q Consensus 515 ~~~~~~ 520 (537)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 876654
No 397
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.54 E-value=1.4e+02 Score=26.29 Aligned_cols=118 Identities=14% Similarity=-0.004 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSV-ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVS-TYNCLIAGLSREGNVE 416 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 416 (537)
|.....++.|...+.+.... .|+. .-|+.-+.++.+..+++.+..--.+.++. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777777666654 4444 34556667777788888777766666653 34433 4445566667777888
Q ss_pred HHHHHHHHHHHC----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 417 GVRNIMNELVNN----GMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 417 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
+|+..+++.... .+++.......|..+--+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888777432 33444455555555443333344455544443
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.45 E-value=1.6e+02 Score=28.45 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=33.6
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hCCCHHHHHHHHHHHHHc
Q 047648 268 GFCKDENISAAMKVFEEMGSHGIAAGVV--TYNSLINGLC--VDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 268 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 323 (537)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777765 444443 3344444443 456677777777776654
No 399
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.20 E-value=2e+02 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=17.9
Q ss_pred HhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047648 178 KRRRIELNLDS--FNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 178 ~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
.+.|..|+... ..+.+...+..|+. ++.+.+.+.|..|+
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~ 62 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGAIPD 62 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCcc
Confidence 34455444322 12233334444443 46666666665443
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.94 E-value=33 Score=22.66 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 047648 190 NFVLNGLCKAGKLNKASDIMEDMKS 214 (537)
Q Consensus 190 ~~l~~~~~~~g~~~~a~~~~~~~~~ 214 (537)
-.+|.++...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456667777777777777666653
No 401
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.82 E-value=93 Score=26.05 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCC-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 415 VEGVRNIMNELVNNGMRA-------GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
++.|+.+|+.+.+.-..| ....--..+-.|.+.|.+++|.+++++... .|+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~------d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS------DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc------CCCchhHHHHHHHHHHccc
Q ss_pred H
Q 047648 488 L 488 (537)
Q Consensus 488 ~ 488 (537)
.
T Consensus 159 ~ 159 (200)
T cd00280 159 P 159 (200)
T ss_pred c
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.34 E-value=31 Score=26.28 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.++..+...+..-.|.++++.+.+.+..++..|....++.+.+.|.+...
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 34556666677778999999999988888899999999999999987653
No 403
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.16 E-value=2.1e+02 Score=27.93 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=9.6
Q ss_pred CChhHHHHHHHHHHhCCCCC
Q 047648 165 GKFEDVEYVYKEMKRRRIEL 184 (537)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~ 184 (537)
.+.+.|+..+..|.+.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44455555555555544433
No 404
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.57 E-value=42 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.-.++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555543
No 405
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.92 E-value=2.3e+02 Score=31.75 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=98.8
Q ss_pred HHhcCCHHHHHH------HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCHHHHHHH
Q 047648 339 FCKKKLVEKARV------LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML-------DRGVLPDVSTYNCL 405 (537)
Q Consensus 339 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~l 405 (537)
....|.+.++.+ ++......-..+....|..+...+-+.|+.++|+..-.... .....-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 55533322223356678888888889999999888765432 11222234455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----C--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC----CCHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNN-----G--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW----PNIVT 474 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 474 (537)
.-.+...+....|...+.+.... | .||...+++.+-..+...++++.|.++.+.+......-.. ++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55556666778888877777653 1 2444555566666666668899999999988764433333 35567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+..+.+.+...+++..|....+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh
Confidence 77777777777777766655443
No 406
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.29 E-value=2.5e+02 Score=27.85 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=62.1
Q ss_pred CCChHHH-HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc-CCCCC
Q 047648 431 RAGLVTY-NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF--CQKGKLEDANGLLNELLEK-GLIPN 506 (537)
Q Consensus 431 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-g~~p~ 506 (537)
.|+..++ +.++..+.+.|-.++|+..+.....+. +|+...|..++..= ...-+...+.++++.|... | -|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp----p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d 529 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP----PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--AD 529 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC----CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CC
Confidence 3444333 567788888899999999999987532 66888888887542 2223378889999998764 5 57
Q ss_pred HHhHHHHHHHHHhcCCcCCc
Q 047648 507 QTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a 526 (537)
+..|...+..=...|.-+.+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~ 549 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENC 549 (568)
T ss_pred hHHHHHHHHhhccCCCcccc
Confidence 77777666655566765544
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.27 E-value=34 Score=31.09 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=27.1
Q ss_pred CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 183 ELNLDS-FNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 183 ~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
.|+..+ |+..|....+.||+++|++++++..+.|+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345554 467888888888888888888888888755
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.29 E-value=2.3e+02 Score=27.26 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVI--TYNTLIDAYC--KEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 393 (537)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888776 444443 4455555555 355677788887776654
No 409
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.06 E-value=3.2e+02 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
..|+..|...+++..|+.++-.+.+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 3477888888889988888876653
No 410
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.86 E-value=2.8e+02 Score=28.01 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=14.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 047648 156 QLLRALVKEGKFEDVEYVYKEMKRRRIE 183 (537)
Q Consensus 156 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (537)
.++.++ ..++++.|..+++.+...|..
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCC
Confidence 344443 335666666666666665533
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.81 E-value=1.2e+02 Score=24.46 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=33.1
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.+.+.|.+++.. -..++..+...++.-.|.++|+.+.+.++..+..|....+..+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445444433 23455666666666677777777776666555555555555555554
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.61 E-value=1.9e+02 Score=26.05 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
-|+.....+...|.+.|++.+|...|-.- -.++...+..++......|...++--++-+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R----------------- 146 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEADLFIAR----------------- 146 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchhHHHHH-----------------
Confidence 36667777777888888887777665321 122333332244333334443333222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+--|...++...|...++...+.
T Consensus 147 -aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 -AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222355567777777777666654
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.58 E-value=11 Score=34.68 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=44.9
Q ss_pred HHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 127 VKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 127 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
...|.++.|++.|...+..+ ++....|..-.+++.+.++...|..=++.....+.. ...-|-.-..+-.-.|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 34555666666666665543 334444555555555566665555555555443211 1112222223333345666666
Q ss_pred HHHHHHHhCCCCC
Q 047648 207 DIMEDMKSLGVSP 219 (537)
Q Consensus 207 ~~~~~~~~~~~~~ 219 (537)
..|....+.+..+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666555554433
No 414
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=50.51 E-value=1e+02 Score=22.85 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=36.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
+..+...|+|++|..+.+.. ..||...|..|. -.+.|-.+++..-+.+|-..| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~-------~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL-------CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCC-------CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34566777777777776544 367777776653 345666666666666666654 3343333
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.83 E-value=2e+02 Score=26.16 Aligned_cols=63 Identities=6% Similarity=0.009 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
.++..+...+++.++..+++....++++..... ++..|...|..++......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455555666666666666666666666555443 444456666666666666666554444443
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.57 E-value=35 Score=27.40 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
-..++..+...+++-.|.++++++.+.+...+..|....++.+.+.|.+...
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~ 74 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRL 74 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEE
Confidence 3466777888877788999999999988777888888889999999987643
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.47 E-value=96 Score=22.25 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=17.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLD 311 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (537)
..|+.+.|.+++..+. +| +..|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3355555555555554 31 223445555554444433
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.27 E-value=12 Score=34.43 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 454 (537)
..|.++.|++.+...+..++. ....|.--.+++.+.+....|++-+......+ || ..-|-.-..+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 445566666666665555322 44455555555556666666665555555432 22 222333333444455555555
Q ss_pred HHHHHHHH
Q 047648 455 SLLDEMFK 462 (537)
Q Consensus 455 ~~~~~~~~ 462 (537)
..+..+.+
T Consensus 203 ~dl~~a~k 210 (377)
T KOG1308|consen 203 HDLALACK 210 (377)
T ss_pred HHHHHHHh
Confidence 55555543
No 419
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=49.05 E-value=33 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
..++..+...+.+-.|.++++.+.+.|...+..|....++.+.+.|.+...
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 456677777777888999999999999888999999999999999987654
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.99 E-value=38 Score=30.77 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 469 WPNIV-TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 469 ~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
.||.. .|+..|..-.+.||+++|+.++++..+.|+.--..+|...+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34443 45688888888899999999999998888775556665443
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.59 E-value=1.4e+02 Score=30.49 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhCCChhH------HHHHHHHHHhCCCCCCHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYG--LKSSVLSCNQLLRALVKEGKFED------VEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
+|..+|+.+|++..+.++++.....+ -+.-...+|..++...+.|.++- +.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887652 22234578888888888887643 333333332 34467777776
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 047648 193 LNGLCKAGKLNKASDIMEDMKS 214 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~ 214 (537)
+.+-..--.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333344444443
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.34 E-value=1.3e+02 Score=23.45 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhCCChhHHHHHHH
Q 047648 133 HLGFEAFKRAGDYGLKSSV-LSCNQLLRALVKEGKFEDVEYVYK 175 (537)
Q Consensus 133 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 175 (537)
+++.++|..|...|+-... ..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356667777766655433 345566666667777777777765
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.92 E-value=22 Score=27.76 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 160 ALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
.+.+.|.-.+|..+|..|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344556677778888888888877765 5555543
No 424
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.59 E-value=2e+02 Score=25.36 Aligned_cols=27 Identities=4% Similarity=0.014 Sum_probs=19.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
+...-...+++.+|+++|+++......
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445678899999999998876554
No 425
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.49 E-value=49 Score=18.46 Aligned_cols=22 Identities=9% Similarity=0.335 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHH
Q 047648 488 LEDANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~~~~ 511 (537)
++.|..+|++.+. +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555554 334444443
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.39 E-value=1.7e+02 Score=26.15 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.-.+..-|.+.|++++|.++|+.+...-...-+ +...+...+..++.+.|+.+..+.+.=++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566777888888888888777542211111 23445556666777777777777665444
No 427
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.38 E-value=4e+02 Score=28.88 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=25.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR 411 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (537)
.|......+-+...++.+....-.++....+.++..|..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355666777777777777766555566666666666653
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.19 E-value=2.3e+02 Score=26.01 Aligned_cols=69 Identities=19% Similarity=0.369 Sum_probs=36.3
Q ss_pred hCCCHHHHHHHHH-HHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 306 VDGKLDEAVALRD-EMMASGLKPNV----VTSNALINGFCKKKLVEKARVLF-DDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 306 ~~~~~~~A~~~~~-~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
+...+++.....+ +|.+.++ |++ ..|..++++---+.+ .++. +...+ ....|..|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKk----eelva~qalr-----hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKK----EELVAEQALR-----HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchH----HHHHHHHHHH-----HHHhhhHHHHHHhcCCh
Confidence 3444555555554 4444443 444 346666665443322 2211 12222 23467888888888888
Q ss_pred hHHHH
Q 047648 380 MEDAF 384 (537)
Q Consensus 380 ~~~A~ 384 (537)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 76544
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.56 E-value=1.1e+02 Score=22.02 Aligned_cols=54 Identities=9% Similarity=-0.112 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhCCC
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKS-SVLSCNQLLRALVKEGK 166 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 166 (537)
|.+...--.+...+...|++++|++.+-.+.+..... +...-..++..+.-.|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4555666677788888888888888888777654222 23333444444444443
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=45.26 E-value=2.6e+02 Score=26.10 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCChHHH--HHHHHHHHhcCChHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNN---GMRAGLVTY--NILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+.++.++|.++++++.+. .-.|+...| .....++...|+..++.+.+++..
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~ 142 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLK 142 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3444555555555555443 112333333 222334444455555555555443
No 431
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.75 E-value=3.1e+02 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLING 303 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (537)
.+.+.|+.++..|.+.|..|....-..++.+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5666666666776666655544433333333
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.35 E-value=80 Score=27.53 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=28.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+.++.+.+.+++.+..+.- +.....|-.+...--+.|+.+.|.+.|++.+++
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34455555555555555532 333455555555555555555555555555543
No 433
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=43.92 E-value=3.3e+02 Score=26.80 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=19.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
..|+..|+++..+++|+.+++|..+.+.|
T Consensus 345 avyad~g~~~rCi~LWkyAL~mqQk~l~P 373 (615)
T KOG0508|consen 345 AVYADSGEFERCIRLWKYALDMQQKNLEP 373 (615)
T ss_pred eeecCCccHHHHHHHHHHHHHHHHhhcCC
Confidence 34666777777777777777666555444
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.60 E-value=1.6e+02 Score=23.01 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHH
Q 047648 134 LGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKE 176 (537)
Q Consensus 134 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (537)
.+.++|..|...|+-.. ...|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777665443 34566677777777888888877765
No 435
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.56 E-value=4.5e+02 Score=28.27 Aligned_cols=75 Identities=8% Similarity=0.060 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHH
Q 047648 80 PKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLR 159 (537)
Q Consensus 80 ~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 159 (537)
+++..+++.|++.|.++.|.+.-+.-+ ..-..++..-+..|.+.+++..|-++|-++.+ .+..+.-
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~p------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaL 424 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTRP------DALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVAL 424 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCCH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHH
Confidence 466777777887777665544321110 00012333344567777788888888777732 2334444
Q ss_pred HHHhCCChh
Q 047648 160 ALVKEGKFE 168 (537)
Q Consensus 160 ~~~~~~~~~ 168 (537)
-+....+.+
T Consensus 425 KFl~~~~~~ 433 (911)
T KOG2034|consen 425 KFLEINQER 433 (911)
T ss_pred HHHhcCCHH
Confidence 444555555
No 436
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.49 E-value=2e+02 Score=24.33 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=95.1
Q ss_pred cCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 323 SGLKPNVVTSNALINGFCKK----KLVEKARVLFDDISEQGLSPSVI----TYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 323 ~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
.|..++...++.++..+.+. +.++.+..+=.+....++.++.. ....-+..|-+.|+|.+--.+|-.....-
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gc 81 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGC 81 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhc
Confidence 46677888888888777654 45555666656665555554433 22233445667788877777776655321
Q ss_pred CCC-CHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHHCCCCCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 395 VLP-DVSTYNCL-IAGLSREG--NVEGVRNIMNELVNNGMRAGL-------VTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 395 ~~p-~~~~~~~l-~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
-.+ |...+..- ..++.+.- +..--...|.+..-.+.+.|. .+=.+++..|-+.-++.+++++++.+.++
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222211 11111111 100011122222222212121 22245666777888888888888887662
Q ss_pred -----------hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 464 -----------EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 464 -----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+..+..+.-...|.....+.+.|..|.|+.++++
T Consensus 162 ~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 162 QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 2233334455667777888888888888888873
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.27 E-value=1.2e+02 Score=21.73 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 047648 411 REGNVEGVRNIMNELV 426 (537)
Q Consensus 411 ~~~~~~~a~~~~~~~~ 426 (537)
..|+.+.|.+++..+.
T Consensus 48 ~~g~~~~ar~LL~~L~ 63 (88)
T cd08819 48 NHGNESGARELLKRIV 63 (88)
T ss_pred ccCcHHHHHHHHHHhc
Confidence 3444555555555444
No 438
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.89 E-value=3.6e+02 Score=26.97 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 381 EDAFAMRNSML-DRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 381 ~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
+...+.++.+. ..|+..+......+.. ...|+...|+.++++....+ ....++..+..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~----------------- 241 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRK----------------- 241 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHH-----------------
Confidence 34444455443 3466666666655553 34588888888887765431 11122222211
Q ss_pred HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 460 MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
++ | ..+...+..++.++...+....|+.+++++.+.|..|...
T Consensus 242 ~l-----g-~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 242 MI-----G-YHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred Hh-----C-CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 11 1 1345555666666665555667888888888888776644
No 439
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.45 E-value=2.1e+02 Score=29.45 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=56.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQ--GLSPSVITYNTLIDAYCKEGRME------DAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
+++++|...|++..+..+++..... |-+.-...+|..++-..+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888899999999998888887664 22223456777777778888754 3444444443 34477788777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
+++-.+.-.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333334444433
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.39 E-value=82 Score=19.47 Aligned_cols=13 Identities=8% Similarity=0.478 Sum_probs=4.7
Q ss_pred HHHHHHHHHHhCC
Q 047648 204 KASDIMEDMKSLG 216 (537)
Q Consensus 204 ~a~~~~~~~~~~~ 216 (537)
++..++++|.+.|
T Consensus 20 ~~~~~l~~l~~~g 32 (48)
T PF11848_consen 20 EVKPLLDRLQQAG 32 (48)
T ss_pred hHHHHHHHHHHcC
Confidence 3333333333333
No 441
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.98 E-value=1.2e+02 Score=22.29 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHhhhccCCCCCCC---CCChHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 047648 11 DITELIRNHHWSKLK---NTDPNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLH 87 (537)
Q Consensus 11 ~~~~~~~~~~w~~~~---~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~ 87 (537)
.+++-++...|-.+. .++...+-..-.....+.+...+.+..-..+.| ...++..|+.+|...+.-..|..+-+
T Consensus 12 ~i~~~V~~~~Wk~laR~LGLse~~I~~i~~~~~~~~eq~~qmL~~W~~~~G---~~At~~~L~~aL~~~~~~~~Ae~I~~ 88 (96)
T cd08315 12 HFIKEVPFDSWNRLMRQLGLSENEIDVAKANERVTREQLYQMLLTWVNKTG---RKASVNTLLDALEAIGLRLAKESIQD 88 (96)
T ss_pred HHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHcccccHHHHHHH
Confidence 344445555666653 455555544433433344445544444433333 23447788888888888777777777
Q ss_pred HHHHCCC
Q 047648 88 MFVKNGK 94 (537)
Q Consensus 88 ~~~~~g~ 94 (537)
.++..|.
T Consensus 89 ~l~~~~~ 95 (96)
T cd08315 89 ELISSGK 95 (96)
T ss_pred HHHHcCC
Confidence 7766653
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.79 E-value=1.9e+02 Score=26.58 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
++++.+.+.++.|.-.++..+.-.+.+.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444555555555555555555555555555555555555554
No 443
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.47 E-value=5.5e+02 Score=28.73 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=89.4
Q ss_pred HHhccCCHHHHHHHHHHHHhC-----------------------CCCCC-----hhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 268 GFCKDENISAAMKVFEEMGSH-----------------------GIAAG-----VVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 268 ~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
+|...|...+|+..|.+.... |-.|. ..-|..+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466778888888888776321 11111 23366778888888888888888777
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH------------H
Q 047648 320 MMASGLKPN----VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED------------A 383 (537)
Q Consensus 320 ~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------------A 383 (537)
+++. .+++ ..+++.+.+.....|.+-+|...+-..... ..-......++..++.+|.++. .
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 7764 2222 345677777788888887776655332110 1112345667777777776543 2
Q ss_pred HH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 384 FA-MRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 384 ~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
.. +++..-+..+.-....|..|-.-+...+++.+|-.++
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 23 2222222222223345666666667788887766543
No 444
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.43 E-value=1.6e+02 Score=22.66 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHH----HHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRS----FLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~----l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 137 (537)
+...|..|-.++...|+++++.. -+.-+-++|...+..-- .+....-+-..++-..|+.++|+.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk------------lWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK------------LWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH------------HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch------------hHHHHHHHHHHHHHhcCChHHHHH
Confidence 34467888999999999998754 45556667765443211 111111223456777889999988
Q ss_pred HHHHHh
Q 047648 138 AFKRAG 143 (537)
Q Consensus 138 ~~~~~~ 143 (537)
.|+...
T Consensus 122 ~fr~ag 127 (144)
T PF12968_consen 122 EFRMAG 127 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 445
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.23 E-value=4.2e+02 Score=27.29 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
+.....-++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+.+.|+......+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455666667777777777766665544311 12234444555556666555555544444
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.66 E-value=54 Score=27.18 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
..++..+...++.-.|.++++++.+.+..++..|....++.+.+.|.+.+.
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 355555556667778899999999888888888888888889998887654
No 447
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.24 E-value=3.4e+02 Score=25.95 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH----------------
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMA---------------- 322 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------- 322 (537)
...|..+-..|...-..-.-..++.-+.+. +-.+.++..+-..+.+.|+.+.|.+++++.+-
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~ 84 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN 84 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q ss_pred ---------cCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHH
Q 047648 323 ---------SGLKPNVVTSNAL---INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC-KEGRMEDAFAMRNS 389 (537)
Q Consensus 323 ---------~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 389 (537)
-...-|...|.++ +..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+.
T Consensus 85 ~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 85 LTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred cccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Q ss_pred HHhCCCCC----CHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHH
Q 047648 390 MLDRGVLP----DVSTYNCLIAGLSREGNV---------------EGVRNIMNELV 426 (537)
Q Consensus 390 ~~~~~~~p----~~~~~~~l~~~~~~~~~~---------------~~a~~~~~~~~ 426 (537)
........ -+...-+..-++...++. +.|...+.+..
T Consensus 165 ~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 165 PLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred HhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
No 448
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.17 E-value=1.3e+02 Score=22.71 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
+++..+.++...++|+++++-|.++|- .+...-..|...+.+.|.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE-It~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKELRSILVKKGV 110 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhH
Confidence 345667778889999999999998873 466666666666666553
No 449
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.13 E-value=1.5e+02 Score=21.96 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 268 GFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 268 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
.+.+.|++++|..+.+.+ ..||...|.++.. .+.|-.+.+..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344555555555554433 2345555544432 24444444444444444443
No 450
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.78 E-value=5e+02 Score=27.72 Aligned_cols=203 Identities=11% Similarity=-0.014 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHH---HHHHcCCchHHHH
Q 047648 61 HSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLML---AYVKNMKPHLGFE 137 (537)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~ 137 (537)
.+...+..||..+-+.|++++...--..|.+- . +.++..|-.-+. .....++..++.+
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~----------------~---pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI----------------A---PLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh----------------c---CCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 34444555666666666555544433333322 1 444555544333 2233477788888
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHh-------CCChhHHHHHHHHHHhC-CCCC--CHHHHHHHH---HHHHhcCChhH
Q 047648 138 AFKRAGDYGLKSSVLSCNQLLRALVK-------EGKFEDVEYVYKEMKRR-RIEL--NLDSFNFVL---NGLCKAGKLNK 204 (537)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~-~~~~--~~~~~~~l~---~~~~~~g~~~~ 204 (537)
+|++.+..- .++..|.-++..+.. .++++....+|.+.++. |... ....|.... ..|..+-..++
T Consensus 172 ~~ekal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 172 LFEKALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 898887653 234444444444333 35677778888776653 2111 122222222 23333444466
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCCCCCHHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 205 ASDIMEDMKSLGVSPKVVTYNILIDGYCK----KGGIGKMYKADAV-------FKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 205 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~~~a~~~-------~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
...+|..-...+. |..+-+.-+.-..+ .....+.+.+.+- +.+.... ..+-...|..++..+.+.|
T Consensus 250 v~a~~~~el~~~~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G 326 (881)
T KOG0128|consen 250 VIALFVRELKQPL--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSG 326 (881)
T ss_pred HHHHHHHHHhccc--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 7777766665542 22221111111110 0001222333322 2222222 2234456777788888888
Q ss_pred CHHHHHHHHHHHHh
Q 047648 274 NISAAMKVFEEMGS 287 (537)
Q Consensus 274 ~~~~a~~~~~~~~~ 287 (537)
++-....+++++..
T Consensus 327 ~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 327 DPVRIQLIEERAVA 340 (881)
T ss_pred CchHHHHHHHHHHH
Confidence 87776666666543
No 451
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.43 E-value=1.5e+02 Score=22.25 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=7.0
Q ss_pred HHHhCCCHHHHHHHHHH
Q 047648 303 GLCVDGKLDEAVALRDE 319 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~ 319 (537)
.|...++.++|...+.+
T Consensus 11 ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHT-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHH
Confidence 34444444444444444
No 452
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.25 E-value=4e+02 Score=26.44 Aligned_cols=410 Identities=11% Similarity=0.048 Sum_probs=196.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHhcC-CchHHHHHHHHHHHCCCCCChHHHHHH
Q 047648 31 TVILQLFNSDADPVLILRYFCWSTKELRASHSL-----LLTGRLLHSLVVAK-KYPKIRSFLHMFVKNGKFTSVSTIFHA 104 (537)
Q Consensus 31 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~~ 104 (537)
+..+.|+.-.++-+.|...++.+......-|+. .++..+.+.+.... .++.+..+++..++...
T Consensus 51 qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq---------- 120 (629)
T KOG2300|consen 51 QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ---------- 120 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc----------
Confidence 344567777778888888887775432222222 35666777776655 67777887777665411
Q ss_pred hhhccCCCCchH-HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHH------hCCCh---hHHHHHH
Q 047648 105 LSTCSDSLCRNS-IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALV------KEGKF---EDVEYVY 174 (537)
Q Consensus 105 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~---~~a~~~~ 174 (537)
..|-.. .....|++.+.-..++..|.+++.-=... -.+-...|..++..+. ...+. ..+....
T Consensus 121 ------~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~ 193 (629)
T KOG2300|consen 121 ------SVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRC 193 (629)
T ss_pred ------CCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 001111 12234667778888898888885432211 1222333433333222 22333 3333444
Q ss_pred HHHHhCCCCCCHHH--------HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHhcCCCCCCHHHHH
Q 047648 175 KEMKRRRIELNLDS--------FNFVLNGLCKAGKLNKASDIMEDMKSL--GVSPKVVTYNILIDGYCKKGGIGKMYKAD 244 (537)
Q Consensus 175 ~~~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~a~ 244 (537)
.+|.+. ..+|..- .+.-+..|...|+...+...++++.+. .+.+....+..-+ +. ....
T Consensus 194 ~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~i--lg----sps~---- 262 (629)
T KOG2300|consen 194 GQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKI--LG----SPSP---- 262 (629)
T ss_pred HHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccc--cC----CCCh----
Confidence 444433 2223221 122233344556666666666655432 1111110000000 00 0000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------HhCC-CCCCh-----hhHHHHHHHHHhCCCHH
Q 047648 245 AVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEM-------GSHG-IAAGV-----VTYNSLINGLCVDGKLD 311 (537)
Q Consensus 245 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~-~~~~~-----~~~~~l~~~~~~~~~~~ 311 (537)
..|..+.+.. ...-.|......-...|-+++|.++-+++ .+.. ..|-. .+...++-+-.-.|++.
T Consensus 263 ~l~~wlpkeq--icaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~ 340 (629)
T KOG2300|consen 263 ILFEWLPKEQ--ICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYV 340 (629)
T ss_pred HHHhhccHhh--hHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 1111111100 01111111111111223344444443333 2221 11111 11122222334578999
Q ss_pred HHHHHHHHHHHcC-CCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH--HHHHHHHHhcCCh
Q 047648 312 EAVALRDEMMASG-LKPNV--------VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY--NTLIDAYCKEGRM 380 (537)
Q Consensus 312 ~A~~~~~~~~~~~-~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~ 380 (537)
+|++-..+|.+-- -.|.+ .....+.-.++..+.++.|+.-|....+.--.-|...+ ..+...|.+.|+.
T Consensus 341 ~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ 420 (629)
T KOG2300|consen 341 EALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDA 420 (629)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccH
Confidence 9999888887641 12321 11122233345678899999988877664222233332 3456678888887
Q ss_pred HHHHHHHHHHHhCCCCC-CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChHHHHHHHHHHHhcCC
Q 047648 381 EDAFAMRNSMLDRGVLP-DVS-----TYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-----GLVTYNILVGALCKDGK 449 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p-~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~ 449 (537)
+.-.++++.+-..+-.+ ... .+..-.-.....+++.+|..++.+-.+..-.. ..-....|...+...|+
T Consensus 421 ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 421 EDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred HHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 77777776654321111 111 11111111246789999999998887652111 12233445566778889
Q ss_pred hHHHHHHHHHHHHchhcCCCCCH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNI 472 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~ 472 (537)
..++.+...-..++.++ -||.
T Consensus 501 ~~es~nmvrpamqlAkK--i~Di 521 (629)
T KOG2300|consen 501 TVESRNMVRPAMQLAKK--IPDI 521 (629)
T ss_pred hHHHHhccchHHHHHhc--CCCc
Confidence 88888888777665444 4553
No 453
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.93 E-value=2.6e+02 Score=24.28 Aligned_cols=61 Identities=10% Similarity=-0.037 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGN-------VEGVRNIMNELVNNGMRAG-----LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 402 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+..+...|...|+ ...|.+.|.+.....-.|. ..+.-.+.....+.|+.++|.+.|.+++.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3344444555555 3345555555554421211 23334456677788888888888888875
No 454
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.55 E-value=6.2e+02 Score=28.64 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=99.6
Q ss_pred HHHhCCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---H--cCC--CCCHhHHHH
Q 047648 303 GLCVDGKLDEAVA------LRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS---E--QGL--SPSVITYNT 369 (537)
Q Consensus 303 ~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~--~~~--~~~~~~~~~ 369 (537)
.....|.+.++.+ ++......-.++....|..+...+-+.++.++|...-.+.. + .|. .-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666666 55533332234556778888888999999999887765431 1 122 223445666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--CCChH
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDR-----GV-LPD-VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----GM--RAGLV 435 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~ 435 (537)
+.-.....++...|...+.+.... |. .|. ..+++.+-..+...++++.|.++.+.+.+. |. -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666777888888887776543 22 233 334455544555668899999999888764 21 23456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+..+.+.+...+++..|....+...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 67777778887888777766655443
No 455
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.38 E-value=98 Score=23.46 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=19.7
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG 165 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (537)
..+...+.+-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333334444455555555555444444444444444444444
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.79 E-value=1.8e+02 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777778888888888888877766
No 457
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.73 E-value=4.9e+02 Score=27.10 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC----------CCHHHHHHHHHHH
Q 047648 414 NVEGVRNIMNELVNN-GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW----------PNIVTYNVLIKGF 482 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~ 482 (537)
..++....+++..+. |+..+......++. ...|++..++.+++++.......+. ++......++.++
T Consensus 184 s~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 184 APETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 483 CQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
.. |+...++.+++++.+.|..|....
T Consensus 262 ~~-~d~~~al~~l~~l~~~G~~~~~il 287 (618)
T PRK14951 262 AQ-GDGRTVVETADELRLNGLSAASTL 287 (618)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCCHHHHH
No 458
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.43 E-value=2.9e+02 Score=24.42 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHC---CCCCChHHHHHH-----HHHHHhcCChHHHHHHHHHHHH
Q 047648 415 VEGVRNIMNELVNN---GMRAGLVTYNIL-----VGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 415 ~~~a~~~~~~~~~~---~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+.|.+.|++..+. .++|...++-.+ +..|-..|+.++|.++-+++++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35566666665432 245654444333 3345568999999999888764
No 459
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.26 E-value=1.1e+02 Score=19.47 Aligned_cols=32 Identities=6% Similarity=-0.147 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC 154 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 154 (537)
.+.-++.+.|++++|.+..+.+++. .|+..-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHH
Confidence 4556677777777777777777764 4554433
No 460
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.11 E-value=93 Score=30.35 Aligned_cols=100 Identities=16% Similarity=0.029 Sum_probs=44.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVT-SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME 381 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 381 (537)
.+...+.++.|..++.++++. .|+... |..-..++.+.+++..|..=+.+..+..+. -...|-.=..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344455566666666666553 343322 222235555566666665555555554211 1112222223333344444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
+|+..|+.... +.|+..-....+.
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 55544444443 2344443333333
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.70 E-value=6.3e+02 Score=28.02 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=10.1
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 047648 193 LNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~ 211 (537)
++-+...+++.+|..+.++
T Consensus 701 ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHhhccHHHHHHHHHH
Confidence 3344556666666555443
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.67 E-value=3.6e+02 Score=25.16 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHH
Q 047648 308 GKLDEAVALRDEMMASGLKP-------------NVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDA 373 (537)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 373 (537)
++.+....+++.+.+.+..| |...++.+... +...+++-.+..++..+. |-.--...+......
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH--HHh
Q 047648 374 YCKEGRMEDAFAMRNSMLDR----GVLPDVSTYN-CLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA--LCK 446 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 446 (537)
||+.|+-+.|++.+++..+. |.+.|...+. .+.-.|....-+.+-++..+.+.+.|...+....--.-++ +..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
..++.+|-.+|-+.+ +.-..-...+|..++.
T Consensus 194 vR~Fk~Aa~Lfld~v---sTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV---STFTSYELMSYETFVR 224 (393)
T ss_pred HHhHHHHHHHHHHHc---ccccceecccHHHHHH
No 463
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.46 E-value=1.6e+02 Score=21.21 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 432 AGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.|....-.+...+...|++++|++.+-++++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555555543
No 464
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.42 E-value=76 Score=21.97 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 483 CQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
...|+.+.+.+++++..+.|..|.......+..++.+-|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777666666555555444433
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.41 E-value=1.8e+02 Score=25.95 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=24.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 300 LINGLCVDGKLDEAVALRDEMMAS----G-LKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
+..-|...|++++|.++|+.+... | ..+...+...+..++...|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344455555555555555544321 1 1223344444555555555555544443
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=36.39 E-value=76 Score=27.56 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHH--HHHHHHHHhcCChHHHHHHHHHHHHchhcCCC
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA---GLVTY--NILVGALCKDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
+.++..-++.|+--|.-...+.+|...|..-. |+.| +...+ ..-|......|+.+.|++.....- +.-+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~---PeiLd 96 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN---PEILD 96 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC---hHHHc
Confidence 44555666777666666666666666665433 3444 33333 455677899999999999988773 33333
Q ss_pred CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 470 PNIVTYNVLI----KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 470 ~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
-|...+-.|. -=+.+.|..++|+++.+.=+.---.-+...+..+=+.+
T Consensus 97 ~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l 148 (228)
T KOG2659|consen 97 TNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTL 148 (228)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 3432222222 22577899999999888766532222334455544443
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.05 E-value=3.5e+02 Score=24.88 Aligned_cols=115 Identities=14% Similarity=0.183 Sum_probs=56.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
++....+.++.......+..+.. ...-...+..+...|++..|++++.+..+. .. ...-|+.+-.. ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHH
Confidence 34444444455555555444432 223334556666778888888777666542 00 00011111100 112
Q ss_pred HHHHHHHHHHHHHC-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 415 VEGVRNIMNELVNN-----GMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 415 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
+++.....+++.+. -...|+..|..+..+|.-.|+...+.+-+...
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222222222221 11467788999999998888877766444433
No 468
>PRK14700 recombination factor protein RarA; Provisional
Probab=35.74 E-value=3.6e+02 Score=24.88 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV 306 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (537)
+.+.|+-++..|.+.|-.|....-..++-++-.
T Consensus 141 DpDAAlYyLArml~~GEDp~~IaRRLii~AsED 173 (300)
T PRK14700 141 DPDAAIFWLSVMLDNGVDPLVIARRMLCIASED 173 (300)
T ss_pred CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 444444444455444444443333333333333
No 469
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.72 E-value=5.8e+02 Score=27.29 Aligned_cols=33 Identities=24% Similarity=0.037 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGF 269 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 269 (537)
.++.+.|+..+.+|.+.|..|....-..++.+.
T Consensus 271 gsD~daAl~~la~ml~~Gedp~~I~Rrl~~~as 303 (725)
T PRK13341 271 GSDPDAALYWLARMVEAGEDPRFIFRRMLIAAS 303 (725)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356677777777777776665544444443333
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.62 E-value=3.4e+02 Score=24.69 Aligned_cols=46 Identities=24% Similarity=0.167 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 047648 312 EAVALRDEMMASGLKPNVVTSNALINGFCK----KKLVEKARVLFDDISEQGL 360 (537)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 360 (537)
.|...+.++-..+ +......+...|.. ..+..+|...|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5666666665554 33333333333322 2356667777766666653
No 471
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.10 E-value=1.4e+02 Score=20.03 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
|....++.++..+++..-.++++..+.++.+.|.. +..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 34445556666666666666666666666666542 4444444444433
No 472
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.65 E-value=4.5e+02 Score=25.73 Aligned_cols=72 Identities=31% Similarity=0.452 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMR--AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
..|+.-|...|++.+|.+.++++ |+| ....++.+++.+.-+.|+-...+.++++... ....|-+.|-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~-------sglIT~nQMtk 582 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK-------SGLITTNQMTK 582 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------cCceeHHHhhh
Confidence 34666677777777777776654 322 2245667777777777777767777766653 23344555556
Q ss_pred HHHh
Q 047648 481 GFCQ 484 (537)
Q Consensus 481 ~~~~ 484 (537)
+|-+
T Consensus 583 Gf~R 586 (645)
T KOG0403|consen 583 GFER 586 (645)
T ss_pred hhhh
Confidence 6654
No 473
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.64 E-value=4.8e+02 Score=26.09 Aligned_cols=37 Identities=3% Similarity=0.128 Sum_probs=21.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 186 (537)
+...+..++.++...+....|+.+++.+.+.|..|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 4445555555555555556677777777776655443
No 474
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.28 E-value=1e+02 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=23.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG 165 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (537)
.++..+...+.+-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 445555555556666666666666555555555444455555544
No 475
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.23 E-value=5.9e+02 Score=26.96 Aligned_cols=94 Identities=7% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CChHHHHHHhhhccCCCCchHHHHHHHHH
Q 047648 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF-TSVSTIFHALSTCSDSLCRNSIIIDMLML 124 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (537)
...++...++..+...+..+...+++.. .|....+..+++.+...|.. .....+...+.. .+......++.
T Consensus 183 I~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~------~d~~~If~Lld 254 (709)
T PRK08691 183 VADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGA------VDKQYLYELLT 254 (709)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcc------cCHHHHHHHHH
Confidence 3444444444444555555554444433 46666666666655543211 112222221111 11112223333
Q ss_pred HHHHcCCchHHHHHHHHHhhCCCC
Q 047648 125 AYVKNMKPHLGFEAFKRAGDYGLK 148 (537)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~~~ 148 (537)
++. .++...++.+++.+...|+.
T Consensus 255 AL~-~~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 255 GII-NQDGAALLAKAQEMAACAVG 277 (709)
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCC
Confidence 333 36666666666666665543
No 476
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.06 E-value=5.1e+02 Score=26.22 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 047648 155 NQLLRALVKEGKFEDVEYVYKEMKRRRIEL 184 (537)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (537)
..++.++. .|+.+.+..+++.+...|..|
T Consensus 250 ~~ll~al~-~~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 250 FDILEALA-AKAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 33444433 356666666666666666554
No 477
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.06 E-value=76 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 047648 416 EGVRNIMNELV 426 (537)
Q Consensus 416 ~~a~~~~~~~~ 426 (537)
+.+..+|+++.
T Consensus 4 ~~~r~i~e~~l 14 (33)
T smart00386 4 ERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 478
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.82 E-value=1.4e+02 Score=19.72 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=13.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
..|++-+|-++++.+=.....+....+..+|+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 44555555555555543322223334444443
No 479
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.82 E-value=7.4e+02 Score=27.39 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHhccCC
Q 047648 257 PNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~ 274 (537)
++...-...+..+.+.+.
T Consensus 633 ~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 355555555555555544
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.79 E-value=4.4e+02 Score=24.81 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHchhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKKWPN----IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
++.+.++.+++.- -|+ ...|-.+++.....|.++.++.+|++++..|-.|-...-..+++.+-
T Consensus 120 eei~~~L~~li~~-----IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN-----IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555555431 233 45678888888888888899999999999888888777777776665
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.73 E-value=6.5e+02 Score=26.67 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=48.9
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 381 EDAFAMRNSML-DRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 381 ~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
++....+.... ..|+..+......++... .|+...++.+++++...+- |.+. .+....
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~-----------------g~It--~e~V~~ 239 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGS-----------------GKVA--ENDVRQ 239 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC-----------------CCcC--HHHHHH
Confidence 34444444443 335655666665555443 4777777777766654320 0100 011111
Q ss_pred HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 460 MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
++ + ..+......++.++.. ++...++.+++++.+.|+.+.
T Consensus 240 lL-----G-~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 240 MI-----G-AVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HH-----c-ccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 11 0 1122233344444443 777777788887777776544
No 482
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.64 E-value=1.8e+02 Score=20.36 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+++..+.++.-.++|+++++-|.++|- .+....+.+-.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE-i~~E~A~~L~~ 73 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE-ITPEMAKALRV 73 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHHHh
Confidence 345556667777888888888887763 34444444433
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.48 E-value=2.9e+02 Score=26.80 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHH-----
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDD-------ISEQGLSP-----SVITYNTLIDAYCKEGRMEDAFAMRNSM----- 390 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 390 (537)
+......++.++....++.+..+.... ..+.|..| .-.+...|++.++-.|++..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred --HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 391 --LDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 391 --~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
...-+.....++-.+.-+|.-.+++.+|.+.|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.39 E-value=5.7e+02 Score=25.92 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
.....++.++. .|+.+.++.+++++.+.|..|.
T Consensus 247 ~~i~~ll~al~-~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 247 LLLFDILEALA-AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 33344444443 3677777777777777776654
No 485
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=31.13 E-value=3.8e+02 Score=23.87 Aligned_cols=52 Identities=8% Similarity=-0.019 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLI-----KGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.|.+.|+.+.++.....+|...+...|+ -.|--.+++++|.++.++..+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 568888898888765555667554443333 2344579999998877766543
No 486
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.43 E-value=4.4e+02 Score=24.36 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.++|+.+.+.++.|.-..+.-+.-.+.+.-.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555555555555555555555555555555666666665554
No 487
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=30.43 E-value=5.9e+02 Score=25.78 Aligned_cols=101 Identities=8% Similarity=-0.029 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CChHHHHHHhhhccCCCCchHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF-TSVSTIFHALSTCSDSLCRNSIIID 120 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
+.+....++..+..+.+...+..++..+.+. ..|-..++..+++++...|.. .....+...+. ..+.....
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG------~~~~~~~~ 250 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFGEGEITLESVRDMLG------LTDIEKLL 250 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHccCCcccHHHHHHHhC------CCCHHHHH
Confidence 4455677888888777888888776666554 577888999999998887642 12222222222 11111122
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCCh
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSV 151 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 151 (537)
.++. ....++..+++..++.+.+.|..|..
T Consensus 251 ~~~~-~i~~~d~~~~~~~~~~l~~~G~~~~~ 280 (515)
T COG2812 251 SLLE-AILKGDAKEALRLINELIEEGKDPEA 280 (515)
T ss_pred HHHH-HHHccCHHHHHHHHHHHHHhCcCHHH
Confidence 2222 23467777777777777777655443
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.34 E-value=3e+02 Score=22.82 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=20.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (537)
++..+...++.-.|.++++.+.+.++.++..|-..-+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333333444455555555555554444444444444444444
No 489
>PRK09857 putative transposase; Provisional
Probab=30.23 E-value=3e+02 Score=25.34 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
++.-+.+.+++.+-++.+.........++.. +..++....+.++.++..++++.+.+. .+......-++..-+.+.|.
T Consensus 178 ll~k~i~~~dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~ 255 (292)
T PRK09857 178 LIQKHIRQRDLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGE 255 (292)
T ss_pred HHHHHcCcHhHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhCCCCCC
Q 047648 202 LNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~ 220 (537)
-+++.++..+|...|+.++
T Consensus 256 qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 256 QSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHcCCCHH
No 490
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.22 E-value=1.1e+02 Score=17.48 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--HHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLN--ELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~--~~~~ 500 (537)
.+-.+.-.+...|++++|.++++ -+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35566777888999999999944 5443
No 491
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.18 E-value=2.4e+02 Score=21.27 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
..++|..+.+.+...+. ....+--+-+..+.+.|+|++|+.. - .....||...|-.| +-.+.|-.+++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~---~----~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL---P----QCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH---H----TTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh---c----ccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 45556666555555431 1222223334456666666666211 1 12335666665554 3345566666666
Q ss_pred HHHHHHHc
Q 047648 494 LLNELLEK 501 (537)
Q Consensus 494 ~~~~~~~~ 501 (537)
.+.++-..
T Consensus 91 ~l~rla~~ 98 (116)
T PF09477_consen 91 RLTRLASS 98 (116)
T ss_dssp HHHHHCT-
T ss_pred HHHHHHhC
Confidence 66655443
No 492
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.18 E-value=5.3e+02 Score=25.22 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHh
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT-TYQIVREEMME 519 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 519 (537)
++..-+..+.+.+++..|..+.+++++.+..|... --..++..+.+
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 44555666778899999999999999865333322 23444444443
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.49 E-value=2.2e+02 Score=22.86 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred chhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCc
Q 047648 463 MEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (537)
+...|..++..=...+-......++.-.|.++++.+.+.+...+..|....++.+.+.|.+
T Consensus 8 l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.44 E-value=1.4e+02 Score=20.05 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
....++.++...++-.-.+++...+.+..+.|. .+..+|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 333444444444444444444444444444443 2344444433333
No 495
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=29.31 E-value=1.6e+02 Score=19.82 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=35.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcC
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIP 524 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (537)
++..+...+.+-.+..+.+.+...|...+..+....++++.+.|...
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~ 49 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTR 49 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcc
Confidence 45566667777777778888877787777888888888888888544
No 496
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.30 E-value=6.3e+02 Score=25.77 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=22.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHH
Q 047648 340 CKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC-KEGRMEDAFAMRNSM 390 (537)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 390 (537)
.+.|.+..|.++-+.+....+.-|+.....+|+.|+ +..++..-+++++..
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555554444444433334444444444443 344444444444443
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.71 E-value=1.4e+02 Score=31.71 Aligned_cols=129 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCC
Q 047648 67 GRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYG 146 (537)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 146 (537)
.++|.-+.+.|..+-|..+++.-.-+ ....+.+|+.+.|++.-....
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR------------------------------F~LaLe~gnle~ale~akkld--- 670 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR------------------------------FELALECGNLEVALEAAKKLD--- 670 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh------------------------------eeeehhcCCHHHHHHHHHhcC---
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (537)
+...|..|......+|+.+-|...|+..+. |+.|--.|.-.|+.++-.++..-...+ +..+-..
T Consensus 671 ---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~~ 734 (1202)
T KOG0292|consen 671 ---DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQF 734 (1202)
T ss_pred ---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHHH
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHH
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKD 249 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~ 249 (537)
....| .|+.++-.++++.
T Consensus 735 qnalY-----l~dv~ervkIl~n 752 (1202)
T KOG0292|consen 735 QNALY-----LGDVKERVKILEN 752 (1202)
T ss_pred HHHHH-----hccHHHHHHHHHh
No 498
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=4.5e+02 Score=23.77 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-NVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
.++.-+=..+.+...-..|+++..+.+..++. +..+|..--..+...+ ++.+-++.+.++.+.+ +.+..+|..-=..
T Consensus 44 ~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~i 121 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHH
Q ss_pred HHhcCChH-HHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 444 LCKDGKSK-KAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 444 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
.-..|++. .-+++.+.|+..+ ..+..+|..--.++..-+.++.=+.+..+|++.++.-|..
T Consensus 122 ve~l~d~s~rELef~~~~l~~D----aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDD----AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcc----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
No 499
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.38 E-value=6.4e+02 Score=25.54 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 047648 156 QLLRALVKEGKFEDVEYVYKEMKRRRIEL 184 (537)
Q Consensus 156 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (537)
.++.+.. .|+...|+.+++.+...|..|
T Consensus 263 ~L~~ai~-~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 263 EFVEYII-HRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3444433 366777777777776666543
No 500
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.30 E-value=1.5e+02 Score=20.89 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|+.+.|+..|+..+++-..++..... .......|+.|.++-++|..
T Consensus 22 g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 22 GDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 56666666666555432222221111 12223346666666666654
Done!