Query 047648
Match_columns 537
No_of_seqs 627 out of 3910
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 23:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-38 4E-43 326.0 40.2 438 61-532 82-575 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-37 5.9E-42 317.3 42.5 440 38-517 95-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-29 2.2E-33 239.5 46.3 382 122-521 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-28 5.7E-33 236.6 48.1 384 69-487 5-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.2E-30 1.8E-34 251.0 25.2 206 171-376 10-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 9.6E-30 3.3E-34 249.1 25.8 203 244-446 10-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 9.5E-25 3.3E-29 218.6 39.9 381 117-511 7-486 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-23 5.3E-28 206.1 39.8 375 113-528 23-446 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4.2E-28 210.5 38.9 372 63-464 6-479 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 3.3E-23 1.1E-27 203.7 41.0 336 138-514 14-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 5.2E-23 1.8E-27 207.2 40.9 405 63-502 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 7.4E-23 2.5E-27 206.0 33.3 399 116-532 25-487 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.7E-24 172.7 40.5 329 151-517 3-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.8E-24 172.6 39.1 333 115-484 2-352 (359)
15 2ooe_A Cleavage stimulation fa 99.9 3.2E-18 1.1E-22 171.5 45.0 422 50-501 2-492 (530)
16 2xm6_A Protein corresponding t 99.9 6.4E-17 2.2E-21 160.4 52.3 357 114-503 37-434 (490)
17 3hym_B Cell division cycle pro 99.9 5.2E-19 1.8E-23 165.9 33.6 291 219-523 20-321 (330)
18 3hym_B Cell division cycle pro 99.9 3.7E-19 1.3E-23 166.9 31.7 292 185-489 21-322 (330)
19 2xm6_A Protein corresponding t 99.9 1.7E-16 5.7E-21 157.4 51.4 399 46-500 26-466 (490)
20 1fch_A Peroxisomal targeting s 99.9 3.3E-19 1.1E-23 170.1 28.1 294 198-499 37-357 (368)
21 2ooe_A Cleavage stimulation fa 99.8 9.5E-17 3.3E-21 160.8 43.4 406 113-529 10-485 (530)
22 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6.2E-23 165.0 26.4 309 126-462 35-358 (368)
23 4eqf_A PEX5-related protein; a 99.8 2.6E-18 9E-23 163.7 27.3 267 222-497 66-352 (365)
24 4eqf_A PEX5-related protein; a 99.8 1.6E-18 5.4E-23 165.2 22.1 264 258-530 64-350 (365)
25 4g1t_A Interferon-induced prot 99.8 5.1E-17 1.7E-21 160.6 33.0 368 115-502 50-460 (472)
26 4g1t_A Interferon-induced prot 99.8 1.6E-16 5.6E-21 156.9 35.9 389 58-475 46-469 (472)
27 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.5E-23 162.3 18.8 237 129-410 16-252 (449)
28 3cv0_A Peroxisome targeting si 99.8 2.4E-17 8.2E-22 154.3 27.0 159 339-500 148-314 (327)
29 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.6E-22 155.4 25.2 264 261-533 23-312 (327)
30 1xi4_A Clathrin heavy chain; a 99.8 2E-14 6.9E-19 149.7 46.8 394 35-486 993-1415(1630)
31 3mkr_A Coatomer subunit epsilo 99.8 8.7E-17 3E-21 147.1 26.6 252 237-509 12-270 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 1.9E-16 6.7E-21 144.7 27.8 250 162-428 10-264 (291)
33 1b89_A Protein (clathrin heavy 99.8 5.9E-17 2E-21 151.3 24.2 380 33-493 9-409 (449)
34 1xi4_A Clathrin heavy chain; a 99.8 1.1E-14 3.8E-19 151.6 41.5 355 115-527 984-1375(1630)
35 3uq3_A Heat shock protein STI1 99.7 1.6E-15 5.5E-20 136.5 25.9 226 259-501 5-236 (258)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-17 5.5E-22 167.4 11.2 150 116-273 127-286 (1134)
37 2pl2_A Hypothetical conserved 99.7 2.2E-15 7.6E-20 131.5 22.4 197 293-498 4-211 (217)
38 3u4t_A TPR repeat-containing p 99.7 1.2E-14 4E-19 132.1 28.0 246 260-511 4-258 (272)
39 3spa_A Mtrpol, DNA-directed RN 99.7 3E-17 1E-21 165.4 9.4 151 150-308 126-286 (1134)
40 3uq3_A Heat shock protein STI1 99.7 1.1E-14 3.6E-19 131.1 24.8 213 237-463 18-236 (258)
41 2pl2_A Hypothetical conserved 99.7 5.6E-15 1.9E-19 129.0 21.8 199 256-460 2-211 (217)
42 3e4b_A ALGK; tetratricopeptide 99.7 2E-14 6.9E-19 140.2 28.0 346 122-503 9-389 (452)
43 2ho1_A Type 4 fimbrial biogene 99.7 5.7E-14 1.9E-18 125.9 26.8 211 294-513 37-248 (252)
44 1ouv_A Conserved hypothetical 99.7 4.4E-13 1.5E-17 121.7 32.9 224 258-502 5-252 (273)
45 3e4b_A ALGK; tetratricopeptide 99.7 2.3E-14 8E-19 139.7 25.5 375 68-500 8-420 (452)
46 2vq2_A PILW, putative fimbrial 99.7 1.2E-13 4.1E-18 121.3 27.3 213 293-514 7-222 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.8E-15 2.3E-19 133.8 19.7 246 273-528 19-267 (275)
48 3u4t_A TPR repeat-containing p 99.6 7.1E-14 2.4E-18 126.9 25.7 245 226-481 8-264 (272)
49 2h6f_A Protein farnesyltransfe 99.6 6.8E-14 2.3E-18 132.2 25.6 249 259-519 97-365 (382)
50 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-14 1.2E-18 126.5 22.0 200 294-501 23-222 (243)
51 4e6h_A MRNA 3'-END-processing 99.6 1E-11 3.5E-16 125.3 42.0 445 46-517 51-584 (679)
52 2h6f_A Protein farnesyltransfe 99.6 9.7E-14 3.3E-18 131.1 24.6 250 114-374 95-363 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 6.1E-14 2.1E-18 124.9 21.8 202 258-464 22-223 (243)
54 2ho1_A Type 4 fimbrial biogene 99.6 4.6E-13 1.6E-17 120.0 26.3 201 259-463 37-238 (252)
55 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 115.9 31.9 222 220-462 5-250 (273)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-14 2.3E-18 127.2 19.8 246 237-495 18-269 (275)
57 2vq2_A PILW, putative fimbrial 99.6 8.8E-13 3E-17 115.7 26.3 205 113-323 5-211 (225)
58 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-13 1.8E-17 113.2 23.1 172 328-508 4-175 (184)
59 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.9E-18 132.7 20.6 306 185-525 8-365 (406)
60 3sf4_A G-protein-signaling mod 99.6 1E-13 3.5E-18 133.7 18.5 307 148-489 6-364 (406)
61 4a1s_A PINS, partner of inscut 99.5 2.1E-13 7.1E-18 131.9 19.3 280 187-501 49-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.5 2.3E-10 7.9E-15 115.4 41.0 410 113-529 63-563 (679)
63 2ond_A Cleavage stimulation fa 99.5 9.7E-12 3.3E-16 114.9 27.7 220 276-501 33-270 (308)
64 3ro2_A PINS homolog, G-protein 99.5 1E-12 3.6E-17 122.9 20.9 279 188-501 7-332 (338)
65 3vtx_A MAMA; tetratricopeptide 99.5 4.3E-12 1.5E-16 107.5 22.8 166 293-462 4-169 (184)
66 3ulq_A Response regulator aspa 99.5 2.9E-12 1E-16 122.5 24.1 231 265-500 109-367 (383)
67 4a1s_A PINS, partner of inscut 99.5 2.9E-13 9.8E-18 131.0 17.0 279 150-462 47-371 (411)
68 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6E-17 127.3 20.6 213 275-497 84-317 (474)
69 3ulq_A Response regulator aspa 99.5 7.1E-12 2.4E-16 119.8 24.3 233 227-465 109-370 (383)
70 3ro2_A PINS homolog, G-protein 99.5 9.9E-13 3.4E-17 123.1 18.0 279 151-463 5-332 (338)
71 2ond_A Cleavage stimulation fa 99.5 5.1E-11 1.7E-15 110.0 27.0 219 241-464 33-271 (308)
72 4abn_A Tetratricopeptide repea 99.5 3.3E-12 1.1E-16 125.4 19.8 213 240-458 84-316 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 4E-12 1.4E-16 117.6 18.3 239 258-500 26-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 4.5E-12 1.5E-16 117.3 18.0 241 220-464 26-308 (311)
75 3q15_A PSP28, response regulat 99.4 4.7E-11 1.6E-15 113.8 24.3 232 263-500 105-364 (378)
76 4i17_A Hypothetical protein; T 99.4 4E-11 1.4E-15 105.4 21.7 208 292-515 5-221 (228)
77 1hz4_A MALT regulatory protein 99.4 3.5E-10 1.2E-14 107.6 28.9 270 190-462 18-321 (373)
78 1hz4_A MALT regulatory protein 99.4 4.3E-10 1.5E-14 107.0 28.8 270 156-428 19-322 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.4 3E-11 1E-15 123.3 21.2 165 329-500 9-173 (723)
80 3as5_A MAMA; tetratricopeptide 99.4 7E-11 2.4E-15 99.8 20.3 164 330-500 9-172 (186)
81 3q15_A PSP28, response regulat 99.4 1.7E-10 6E-15 109.9 24.4 223 237-463 114-365 (378)
82 3as5_A MAMA; tetratricopeptide 99.4 9.3E-11 3.2E-15 99.0 20.2 164 297-464 11-174 (186)
83 4i17_A Hypothetical protein; T 99.4 1.6E-10 5.6E-15 101.5 22.1 196 257-464 5-210 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.3 8.3E-11 2.8E-15 120.1 21.0 165 294-462 9-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.3 7.2E-11 2.5E-15 107.3 15.8 230 270-500 12-280 (283)
86 1qqe_A Vesicular transport pro 99.3 4.2E-10 1.4E-14 102.9 19.9 204 303-508 46-274 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 1.1E-10 3.6E-15 106.2 14.9 225 237-462 14-280 (283)
88 3qky_A Outer membrane assembly 99.2 1.3E-09 4.4E-14 97.9 19.6 216 293-531 14-256 (261)
89 2uy1_A Cleavage stimulation fa 99.2 3.6E-08 1.2E-12 96.6 30.8 374 130-526 28-455 (493)
90 2fo7_A Synthetic consensus TPR 99.2 1.9E-09 6.6E-14 85.4 17.4 130 366-501 3-132 (136)
91 3urz_A Uncharacterized protein 99.2 1.8E-09 6.2E-14 93.1 17.6 188 297-514 7-197 (208)
92 1qqe_A Vesicular transport pro 99.2 4E-09 1.4E-13 96.3 20.7 206 239-461 32-267 (292)
93 3mv2_B Coatomer subunit epsilo 99.1 3.1E-08 1.1E-12 88.7 25.0 180 243-429 85-283 (310)
94 3mv2_B Coatomer subunit epsilo 99.1 3.3E-08 1.1E-12 88.5 23.5 245 124-395 21-284 (310)
95 3urz_A Uncharacterized protein 99.1 6.2E-09 2.1E-13 89.7 18.1 190 259-478 4-196 (208)
96 2fo7_A Synthetic consensus TPR 99.1 9.4E-09 3.2E-13 81.3 17.9 128 332-462 4-131 (136)
97 2pzi_A Probable serine/threoni 99.1 3.7E-09 1.3E-13 108.5 18.9 174 305-487 402-583 (681)
98 3dra_A Protein farnesyltransfe 99.1 1.4E-07 4.9E-12 85.3 26.5 229 275-510 49-295 (306)
99 4ga2_A E3 SUMO-protein ligase 99.1 8.4E-10 2.9E-14 89.5 10.7 121 374-500 7-128 (150)
100 3qky_A Outer membrane assembly 99.1 1.2E-08 4E-13 91.6 19.0 101 258-359 14-127 (261)
101 2pzi_A Probable serine/threoni 99.0 1.2E-08 4.2E-13 104.7 20.9 174 270-449 402-583 (681)
102 3qou_A Protein YBBN; thioredox 99.0 7.8E-09 2.7E-13 94.1 17.4 169 326-500 114-283 (287)
103 3rjv_A Putative SEL1 repeat pr 99.0 4E-08 1.4E-12 84.9 21.0 177 312-503 4-199 (212)
104 4ga2_A E3 SUMO-protein ligase 99.0 1.3E-09 4.3E-14 88.5 10.3 146 335-487 3-149 (150)
105 2r5s_A Uncharacterized protein 99.0 3.9E-09 1.3E-13 88.3 13.6 160 334-499 11-171 (176)
106 3dra_A Protein farnesyltransfe 99.0 2.5E-07 8.4E-12 83.8 25.6 226 124-357 40-286 (306)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 4E-08 1.4E-12 85.8 19.8 189 293-502 3-214 (225)
108 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.7E-13 102.4 18.7 153 307-463 2-157 (568)
109 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 85.5 14.4 162 297-462 9-172 (176)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 2.7E-08 9.3E-13 91.5 18.1 189 303-494 45-254 (307)
111 3qou_A Protein YBBN; thioredox 99.0 2.6E-08 9E-13 90.5 17.3 164 294-461 117-282 (287)
112 2vsy_A XCC0866; transferase, g 99.0 2.2E-08 7.5E-13 100.9 18.3 165 272-441 2-169 (568)
113 2uy1_A Cleavage stimulation fa 99.0 2.1E-06 7.2E-11 84.1 31.5 331 114-462 45-412 (493)
114 3rjv_A Putative SEL1 repeat pr 99.0 2.6E-07 8.9E-12 79.7 22.5 179 170-359 5-198 (212)
115 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.7E-07 5.8E-12 81.8 20.7 183 258-462 3-212 (225)
116 3u3w_A Transcriptional activat 98.9 4.6E-07 1.6E-11 82.6 24.4 166 335-500 81-265 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 2.8E-08 9.7E-13 91.4 15.8 226 271-526 3-251 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.9E-07 6.5E-12 80.6 19.5 130 367-501 9-150 (213)
119 4gco_A Protein STI-1; structur 98.9 5.8E-08 2E-12 75.8 14.5 103 400-509 14-116 (126)
120 3gyz_A Chaperone protein IPGC; 98.9 1.4E-08 4.8E-13 81.9 10.0 104 398-508 35-138 (151)
121 3gw4_A Uncharacterized protein 98.8 1E-07 3.5E-12 81.6 15.2 159 341-500 4-175 (203)
122 4gco_A Protein STI-1; structur 98.8 1.6E-07 5.5E-12 73.3 14.9 109 365-479 14-122 (126)
123 2e2e_A Formate-dependent nitri 98.8 7.4E-08 2.5E-12 80.5 13.6 119 376-500 22-143 (177)
124 2vgx_A Chaperone SYCD; alterna 98.8 3.2E-08 1.1E-12 79.8 10.7 98 398-500 20-117 (148)
125 1a17_A Serine/threonine protei 98.8 2.7E-07 9.4E-12 75.9 16.6 130 365-500 14-145 (166)
126 3u3w_A Transcriptional activat 98.8 2.3E-06 7.7E-11 78.0 24.1 164 300-463 81-266 (293)
127 3q7a_A Farnesyltransferase alp 98.8 4.1E-06 1.4E-10 76.6 24.9 177 125-309 63-257 (349)
128 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.5E-11 79.6 22.1 170 331-500 77-265 (293)
129 3q7a_A Farnesyltransferase alp 98.8 5.1E-06 1.8E-10 76.0 24.9 231 275-511 70-340 (349)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.1E-06 3.7E-11 75.8 19.3 124 300-428 12-150 (213)
131 4gcn_A Protein STI-1; structur 98.7 4.5E-07 1.5E-11 70.8 15.1 111 400-513 9-122 (127)
132 2vgx_A Chaperone SYCD; alterna 98.7 1.5E-07 5E-12 75.9 12.2 100 363-464 20-119 (148)
133 2qfc_A PLCR protein; TPR, HTH, 98.7 5.4E-06 1.9E-10 75.5 23.8 167 296-462 77-265 (293)
134 2lni_A Stress-induced-phosphop 98.7 5E-07 1.7E-11 71.0 14.7 94 366-461 18-111 (133)
135 1na0_A Designed protein CTPR3; 98.7 7.5E-07 2.6E-11 69.0 15.4 96 400-500 10-105 (125)
136 1a17_A Serine/threonine protei 98.7 9.1E-07 3.1E-11 72.7 16.6 130 330-462 14-145 (166)
137 2c2l_A CHIP, carboxy terminus 98.7 1.3E-07 4.4E-12 85.6 12.0 195 293-500 3-198 (281)
138 2vyi_A SGTA protein; chaperone 98.7 6.4E-07 2.2E-11 70.0 14.7 117 400-523 13-130 (131)
139 2vyi_A SGTA protein; chaperone 98.7 1.2E-06 3.9E-11 68.5 16.1 120 363-488 11-130 (131)
140 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.7E-12 75.5 10.6 95 401-500 20-114 (142)
141 3upv_A Heat shock protein STI1 98.7 7.4E-07 2.5E-11 69.5 14.5 96 400-500 5-100 (126)
142 1na0_A Designed protein CTPR3; 98.7 1.3E-06 4.5E-11 67.5 16.0 116 364-485 9-124 (125)
143 3dss_A Geranylgeranyl transfer 98.7 8E-06 2.7E-10 74.4 23.1 188 310-509 90-310 (331)
144 3gyz_A Chaperone protein IPGC; 98.7 3.5E-07 1.2E-11 73.7 12.7 98 364-463 36-133 (151)
145 1p5q_A FKBP52, FK506-binding p 98.6 7.2E-07 2.5E-11 83.0 16.0 96 399-499 196-292 (336)
146 4f3v_A ESX-1 secretion system 98.6 6.8E-07 2.3E-11 79.0 14.3 132 367-506 105-240 (282)
147 2c2l_A CHIP, carboxy terminus 98.6 1.6E-07 5.5E-12 85.0 10.6 195 258-462 3-198 (281)
148 3gw4_A Uncharacterized protein 98.6 1.3E-06 4.6E-11 74.5 15.7 157 306-463 4-176 (203)
149 3dss_A Geranylgeranyl transfer 98.6 4.1E-06 1.4E-10 76.3 19.5 154 345-507 90-271 (331)
150 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.8E-11 68.4 14.4 116 329-447 16-131 (133)
151 2e2e_A Formate-dependent nitri 98.6 1.1E-06 3.8E-11 73.2 13.8 117 343-462 24-143 (177)
152 1p5q_A FKBP52, FK506-binding p 98.6 1.8E-06 6.1E-11 80.3 16.3 131 330-462 148-293 (336)
153 1elw_A TPR1-domain of HOP; HOP 98.6 3.4E-06 1.2E-10 64.4 15.2 97 399-500 4-100 (118)
154 2xcb_A PCRH, regulatory protei 98.6 2.8E-06 9.6E-11 67.8 15.1 100 364-465 18-117 (142)
155 2fbn_A 70 kDa peptidylprolyl i 98.6 1.3E-07 4.5E-12 80.6 7.6 131 365-500 39-185 (198)
156 3upv_A Heat shock protein STI1 98.5 3.1E-06 1E-10 65.9 14.7 99 364-464 4-102 (126)
157 1elr_A TPR2A-domain of HOP; HO 98.5 2.3E-06 7.7E-11 66.9 14.0 116 399-518 4-123 (131)
158 3q49_B STIP1 homology and U bo 98.5 3.4E-06 1.2E-10 66.7 15.1 99 363-463 8-106 (137)
159 3sz7_A HSC70 cochaperone (SGT) 98.5 2.5E-06 8.4E-11 70.1 14.5 99 364-464 11-109 (164)
160 3sz7_A HSC70 cochaperone (SGT) 98.5 1.9E-06 6.4E-11 70.8 13.5 103 398-507 10-112 (164)
161 1elw_A TPR1-domain of HOP; HOP 98.5 5.1E-06 1.7E-10 63.4 14.9 97 364-462 4-100 (118)
162 3q49_B STIP1 homology and U bo 98.5 2.9E-06 9.9E-11 67.1 13.8 100 397-501 7-106 (137)
163 4b4t_Q 26S proteasome regulato 98.5 1.1E-05 3.7E-10 78.1 19.7 196 266-461 11-243 (434)
164 4f3v_A ESX-1 secretion system 98.5 4.2E-06 1.4E-10 73.9 14.8 190 128-324 18-238 (282)
165 1hxi_A PEX5, peroxisome target 98.5 1.9E-06 6.4E-11 66.6 11.2 94 402-500 20-113 (121)
166 4gcn_A Protein STI-1; structur 98.4 4.2E-06 1.4E-10 65.2 13.1 97 365-462 9-111 (127)
167 2fbn_A 70 kDa peptidylprolyl i 98.4 5.6E-07 1.9E-11 76.6 7.6 149 371-527 11-176 (198)
168 2dba_A Smooth muscle cell asso 98.4 1.2E-05 4.1E-10 64.3 15.1 103 398-508 27-133 (148)
169 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 63.3 11.3 99 400-501 7-106 (112)
170 3rkv_A Putative peptidylprolyl 98.4 6.2E-06 2.1E-10 67.5 13.3 70 433-508 62-131 (162)
171 3ro3_A PINS homolog, G-protein 98.4 3.8E-06 1.3E-10 68.4 11.8 135 366-500 11-157 (164)
172 4b4t_Q 26S proteasome regulato 98.4 3.8E-05 1.3E-09 74.2 20.7 198 228-428 11-245 (434)
173 2kck_A TPR repeat; tetratricop 98.4 5.9E-06 2E-10 62.4 11.9 97 364-462 6-105 (112)
174 2dba_A Smooth muscle cell asso 98.4 1.8E-05 6E-10 63.3 15.3 99 363-463 27-128 (148)
175 1wao_1 Serine/threonine protei 98.3 3.8E-06 1.3E-10 82.1 12.7 118 303-423 15-134 (477)
176 1elr_A TPR2A-domain of HOP; HO 98.3 5.7E-06 1.9E-10 64.5 11.6 111 365-481 5-121 (131)
177 1hxi_A PEX5, peroxisome target 98.3 5E-06 1.7E-10 64.1 10.9 94 367-462 20-113 (121)
178 2xev_A YBGF; tetratricopeptide 98.3 2.1E-05 7.2E-10 61.2 14.8 103 404-510 7-112 (129)
179 1dce_A Protein (RAB geranylger 98.2 9.6E-05 3.3E-09 73.5 20.2 173 344-525 44-244 (567)
180 3k9i_A BH0479 protein; putativ 98.2 2.9E-06 9.9E-11 65.1 6.9 85 412-500 3-89 (117)
181 2l6j_A TPR repeat-containing p 98.2 2.4E-05 8.1E-10 58.9 12.1 95 433-533 3-104 (111)
182 2xev_A YBGF; tetratricopeptide 98.2 6.1E-05 2.1E-09 58.5 14.6 92 369-462 7-104 (129)
183 1wao_1 Serine/threonine protei 98.2 5.2E-06 1.8E-10 81.1 9.8 120 371-496 13-134 (477)
184 1dce_A Protein (RAB geranylger 98.2 9E-05 3.1E-09 73.7 18.8 173 310-490 45-244 (567)
185 3k9i_A BH0479 protein; putativ 98.2 5.2E-06 1.8E-10 63.6 7.7 87 377-464 3-91 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.2 2.3E-05 7.9E-10 73.7 13.4 120 367-491 226-360 (370)
187 3ro3_A PINS homolog, G-protein 98.2 1.6E-05 5.3E-10 64.6 10.9 133 331-463 11-158 (164)
188 2hr2_A Hypothetical protein; a 98.2 1.8E-05 6.3E-10 62.9 10.6 99 402-500 14-130 (159)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.9E-05 9.8E-10 75.5 14.0 88 400-492 318-405 (457)
190 3rkv_A Putative peptidylprolyl 98.1 2.2E-05 7.6E-10 64.1 11.1 98 366-464 13-127 (162)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5E-05 1.7E-09 73.8 14.9 96 364-461 317-413 (457)
192 2hr2_A Hypothetical protein; a 98.1 5.8E-05 2E-09 60.1 12.0 99 367-466 14-134 (159)
193 1zu2_A Mitochondrial import re 98.1 9.9E-06 3.4E-10 64.3 7.6 99 413-518 16-135 (158)
194 3n71_A Histone lysine methyltr 98.0 2.8E-05 9.6E-10 75.4 11.7 129 373-501 318-464 (490)
195 1ihg_A Cyclophilin 40; ppiase 98.0 5.8E-05 2E-09 70.9 13.6 91 363-455 272-362 (370)
196 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.3E-10 73.9 9.0 148 329-500 179-327 (338)
197 2kat_A Uncharacterized protein 98.0 6.4E-05 2.2E-09 57.1 10.5 78 383-462 4-81 (115)
198 1klx_A Cysteine rich protein B 97.9 0.00047 1.6E-08 54.3 14.4 110 379-502 10-127 (138)
199 2if4_A ATFKBP42; FKBP-like, al 97.9 4.4E-05 1.5E-09 70.9 9.4 150 293-463 178-328 (338)
200 3n71_A Histone lysine methyltr 97.9 8.6E-05 2.9E-09 72.0 11.5 133 72-215 318-464 (490)
201 2kat_A Uncharacterized protein 97.8 0.0002 7E-09 54.2 10.5 99 417-520 3-102 (115)
202 2l6j_A TPR repeat-containing p 97.7 3.8E-05 1.3E-09 57.8 5.5 61 366-427 6-66 (111)
203 1klx_A Cysteine rich protein B 97.7 0.0015 5E-08 51.4 14.8 16 412-427 110-125 (138)
204 1na3_A Designed protein CTPR2; 97.7 0.00042 1.4E-08 49.6 10.7 83 115-199 8-90 (91)
205 1na3_A Designed protein CTPR2; 97.7 0.00045 1.5E-08 49.4 10.7 62 435-500 10-71 (91)
206 3ma5_A Tetratricopeptide repea 97.7 0.0003 1E-08 51.7 9.7 62 434-499 7-68 (100)
207 3ma5_A Tetratricopeptide repea 97.6 0.00031 1.1E-08 51.7 9.2 66 398-464 6-71 (100)
208 1zu2_A Mitochondrial import re 97.6 0.0002 6.9E-09 56.8 8.0 85 378-464 16-121 (158)
209 3ly7_A Transcriptional activat 97.5 0.0023 7.8E-08 58.5 14.3 75 431-512 274-348 (372)
210 3qwp_A SET and MYND domain-con 97.4 0.0025 8.4E-08 60.9 14.0 93 408-500 296-399 (429)
211 3qww_A SET and MYND domain-con 97.3 0.00083 2.9E-08 64.0 9.9 105 411-515 310-428 (433)
212 3bee_A Putative YFRE protein; 97.2 0.0044 1.5E-07 44.5 10.4 67 431-501 3-72 (93)
213 3mkq_A Coatomer beta'-subunit; 97.2 0.022 7.5E-07 59.8 19.7 186 269-523 609-799 (814)
214 2kc7_A BFR218_protein; tetratr 97.1 0.0017 5.9E-08 47.3 7.5 55 373-428 9-64 (99)
215 3ly7_A Transcriptional activat 97.1 0.021 7.1E-07 52.3 15.6 66 396-463 274-339 (372)
216 3qwp_A SET and MYND domain-con 97.1 0.003 1E-07 60.3 10.7 101 371-471 294-408 (429)
217 2v5f_A Prolyl 4-hydroxylase su 97.0 0.011 3.6E-07 43.6 11.1 76 432-509 3-81 (104)
218 3qww_A SET and MYND domain-con 97.0 0.0026 8.8E-08 60.6 9.5 96 376-471 310-419 (433)
219 1pc2_A Mitochondria fission pr 97.0 0.013 4.5E-07 45.9 11.8 91 415-512 14-109 (152)
220 2kc7_A BFR218_protein; tetratr 96.9 0.0014 4.8E-08 47.8 5.4 56 406-462 7-63 (99)
221 3bee_A Putative YFRE protein; 96.7 0.027 9.2E-07 40.3 10.7 64 398-462 5-71 (93)
222 4h7y_A Dual specificity protei 96.3 0.054 1.9E-06 41.8 10.5 114 398-517 12-138 (161)
223 1pc2_A Mitochondria fission pr 96.1 0.037 1.3E-06 43.4 9.0 82 381-464 15-101 (152)
224 3mkq_B Coatomer subunit alpha; 96.1 0.44 1.5E-05 38.3 16.0 129 337-498 13-141 (177)
225 3mkq_A Coatomer beta'-subunit; 96.0 0.22 7.6E-06 52.1 17.9 126 161-322 609-735 (814)
226 3u64_A Protein TP_0956; tetrat 95.9 0.077 2.6E-06 46.5 11.1 95 415-514 179-284 (301)
227 4h7y_A Dual specificity protei 95.7 0.13 4.4E-06 39.8 10.0 104 113-218 10-126 (161)
228 2v5f_A Prolyl 4-hydroxylase su 95.7 0.15 5E-06 37.3 10.5 66 398-463 4-75 (104)
229 3mkq_B Coatomer subunit alpha; 95.4 0.52 1.8E-05 37.9 13.2 45 270-320 16-60 (177)
230 3lvg_A Clathrin heavy chain 1; 95.2 0.0025 8.6E-08 59.6 -0.8 89 62-177 82-170 (624)
231 1nzn_A CGI-135 protein, fissio 94.9 0.38 1.3E-05 36.2 10.5 87 414-507 16-107 (126)
232 3u64_A Protein TP_0956; tetrat 94.9 0.18 6.2E-06 44.2 10.0 110 114-225 152-281 (301)
233 3lvg_A Clathrin heavy chain 1; 94.8 4.1E-06 1.4E-10 77.8 -20.2 267 113-419 51-324 (624)
234 1nzn_A CGI-135 protein, fissio 94.5 0.33 1.1E-05 36.5 9.2 80 382-463 19-103 (126)
235 4b4t_P 26S proteasome regulato 94.0 4.4 0.00015 38.6 20.5 95 368-462 141-246 (445)
236 1wy6_A Hypothetical protein ST 93.9 1.6 5.3E-05 33.1 14.1 64 366-430 93-156 (172)
237 4ady_A RPN2, 26S proteasome re 93.2 9.3 0.00032 39.8 35.7 317 195-528 383-727 (963)
238 3ffl_A Anaphase-promoting comp 93.2 1 3.5E-05 35.6 10.2 28 472-499 122-149 (167)
239 2ff4_A Probable regulatory pro 93.1 0.83 2.8E-05 42.7 11.6 68 439-510 176-248 (388)
240 1wy6_A Hypothetical protein ST 92.9 2.4 8.2E-05 32.1 16.5 138 342-504 20-157 (172)
241 4gns_B Protein CSD3, chitin bi 92.5 0.81 2.8E-05 46.5 11.0 52 443-498 346-397 (754)
242 4fhn_B Nucleoporin NUP120; pro 92.0 7.9 0.00027 42.1 18.9 142 265-414 818-986 (1139)
243 4gns_B Protein CSD3, chitin bi 91.2 1.1 3.7E-05 45.6 10.3 127 189-320 251-397 (754)
244 4fhn_B Nucleoporin NUP120; pro 90.4 5 0.00017 43.7 15.4 29 115-143 841-869 (1139)
245 2ff4_A Probable regulatory pro 89.9 1.4 4.9E-05 41.1 9.5 67 368-435 175-246 (388)
246 4b4t_P 26S proteasome regulato 89.7 14 0.00048 35.1 18.7 101 400-500 138-246 (445)
247 3o48_A Mitochondria fission 1 89.5 2 7E-05 32.4 8.0 71 218-288 37-107 (134)
248 1y8m_A FIS1; mitochondria, unk 89.2 5 0.00017 30.7 10.1 70 219-288 37-106 (144)
249 4ady_A RPN2, 26S proteasome re 89.2 24 0.00081 36.9 32.4 274 237-521 387-675 (963)
250 1v54_E Cytochrome C oxidase po 87.6 5.5 0.00019 28.3 8.5 42 385-426 31-72 (109)
251 3txn_A 26S proteasome regulato 87.4 18 0.00062 33.5 17.0 167 294-461 19-208 (394)
252 1v54_E Cytochrome C oxidase po 87.2 6.3 0.00022 28.0 9.4 49 344-392 25-73 (109)
253 3lpz_A GET4 (YOR164C homolog); 87.0 17 0.00057 32.7 22.4 82 397-500 134-215 (336)
254 2wpv_A GET4, UPF0363 protein Y 86.2 18 0.00062 32.2 21.7 80 398-499 133-215 (312)
255 3o48_A Mitochondria fission 1 85.4 10 0.00035 28.7 11.6 75 431-510 37-114 (134)
256 4b4t_R RPN7, 26S proteasome re 83.9 15 0.0005 34.8 12.8 97 366-462 133-236 (429)
257 2y69_E Cytochrome C oxidase su 83.9 12 0.00041 28.2 9.4 59 382-441 71-129 (152)
258 1zbp_A Hypothetical protein VP 83.4 4.7 0.00016 34.8 8.1 117 372-501 5-129 (273)
259 2y69_E Cytochrome C oxidase su 83.4 9.5 0.00032 28.8 8.5 62 344-406 68-129 (152)
260 3ffl_A Anaphase-promoting comp 80.5 11 0.00037 29.8 8.5 27 187-213 123-149 (167)
261 1y8m_A FIS1; mitochondria, unk 80.0 18 0.00062 27.7 13.9 73 431-508 36-111 (144)
262 4a1g_A Mitotic checkpoint seri 78.6 21 0.00073 27.7 13.0 53 133-185 82-135 (152)
263 1qsa_A Protein (soluble lytic 78.4 56 0.0019 32.5 34.0 228 113-357 99-347 (618)
264 4b4t_R RPN7, 26S proteasome re 77.6 18 0.00061 34.2 11.0 61 153-213 133-195 (429)
265 3txn_A 26S proteasome regulato 77.4 46 0.0016 30.8 26.6 295 188-502 21-344 (394)
266 2wpv_A GET4, UPF0363 protein Y 74.4 47 0.0016 29.6 22.1 112 262-388 36-158 (312)
267 3eiq_C Programmed cell death p 71.1 62 0.0021 29.5 12.8 26 262-287 57-82 (358)
268 1qsa_A Protein (soluble lytic 66.6 1.1E+02 0.0036 30.5 36.1 49 441-495 388-436 (618)
269 1zbp_A Hypothetical protein VP 66.4 64 0.0022 27.9 14.1 55 160-215 6-60 (273)
270 3ubw_A 14-3-3E, 14-3-3 protein 65.7 64 0.0022 27.6 11.7 51 450-500 172-227 (261)
271 3eiq_C Programmed cell death p 65.1 17 0.00059 33.1 7.3 26 118-143 56-81 (358)
272 3ltm_A Alpha-REP4; protein eng 65.1 56 0.0019 26.7 18.2 141 363-522 63-203 (211)
273 3esl_A Checkpoint serine/threo 64.8 57 0.0019 26.7 9.8 56 342-397 92-148 (202)
274 2uwj_G Type III export protein 64.3 35 0.0012 24.1 8.0 51 268-324 48-98 (115)
275 2wvi_A Mitotic checkpoint seri 63.5 53 0.0018 25.9 12.0 54 134-187 78-132 (164)
276 2p58_C Putative type III secre 63.0 38 0.0013 24.0 8.7 49 269-323 50-98 (116)
277 3esl_A Checkpoint serine/threo 60.6 69 0.0023 26.2 10.6 51 412-462 92-143 (202)
278 2uwj_G Type III export protein 60.4 42 0.0014 23.8 8.0 78 414-502 21-98 (115)
279 2p58_C Putative type III secre 59.8 44 0.0015 23.7 8.5 78 414-502 22-99 (116)
280 3uzd_A 14-3-3 protein gamma; s 56.8 91 0.0031 26.5 10.2 51 450-500 147-202 (248)
281 3ltm_A Alpha-REP4; protein eng 56.4 80 0.0027 25.7 17.7 91 362-461 93-183 (211)
282 1wdy_A 2-5A-dependent ribonucl 55.6 52 0.0018 28.3 8.9 11 195-205 11-21 (285)
283 2br9_A 14-3-3E, 14-3-3 protein 54.2 99 0.0034 26.1 10.3 51 450-500 146-201 (234)
284 4ets_A Ferric uptake regulatio 51.6 36 0.0012 26.8 6.3 73 451-526 14-88 (162)
285 3iqu_A 14-3-3 protein sigma; s 51.5 1.1E+02 0.0037 25.8 9.7 51 450-500 149-204 (236)
286 1k1a_A B-cell lymphoma 3-encod 51.4 1E+02 0.0035 25.5 9.9 23 195-217 15-37 (241)
287 2r9g_A AAA ATPase, central reg 50.4 1E+02 0.0035 25.1 9.3 17 273-289 28-44 (204)
288 1wdy_A 2-5A-dependent ribonucl 49.2 87 0.003 26.7 9.3 87 122-220 8-99 (285)
289 2zu6_B Programmed cell death p 48.1 88 0.003 27.7 8.8 24 120-143 7-30 (307)
290 2ion_A PDCD4, programmed cell 47.7 73 0.0025 24.7 7.3 26 401-426 11-36 (152)
291 2nsz_A Programmed cell death p 47.3 87 0.003 23.4 8.7 25 402-426 10-34 (129)
292 3lpz_A GET4 (YOR164C homolog); 47.2 1.6E+02 0.0054 26.4 26.7 112 261-387 37-159 (336)
293 4a1g_A Mitotic checkpoint seri 47.0 98 0.0034 24.0 8.9 50 348-397 84-134 (152)
294 2d2s_A Exocyst complex compone 46.8 1.2E+02 0.0041 25.6 9.1 89 122-213 24-118 (235)
295 3ltj_A Alpharep-4; protein eng 46.6 1.1E+02 0.0038 24.5 17.4 17 471-487 151-167 (201)
296 2d2s_A Exocyst complex compone 45.7 1.1E+02 0.0037 25.9 8.6 22 336-357 25-46 (235)
297 3mwm_A ZUR, putative metal upt 44.4 25 0.00085 26.9 4.2 51 476-526 17-67 (139)
298 3eu9_A Huntingtin-interacting 44.4 50 0.0017 27.4 6.7 16 158-173 46-61 (240)
299 2o03_A Probable zinc uptake re 44.0 26 0.0009 26.3 4.2 51 476-526 14-64 (131)
300 3bge_A Predicted ATPase; struc 43.9 1.3E+02 0.0044 24.5 8.5 31 273-303 21-51 (201)
301 1o9d_A 14-3-3-like protein C; 42.3 1.6E+02 0.0056 25.2 11.3 51 450-500 151-206 (260)
302 4gq2_M Nucleoporin NUP120; bet 42.2 2.7E+02 0.0094 29.4 12.9 50 472-521 897-950 (950)
303 3kea_A K1L; tropism, ANK repea 41.1 1.7E+02 0.006 25.2 10.9 79 373-461 167-245 (285)
304 2r9g_A AAA ATPase, central reg 40.7 1.5E+02 0.005 24.2 10.6 35 376-411 26-60 (204)
305 1mzb_A Ferric uptake regulatio 39.8 32 0.0011 26.0 4.2 60 466-526 12-72 (136)
306 1bpo_A Protein (clathrin); cla 39.3 2.4E+02 0.0081 26.7 10.2 57 30-90 332-388 (494)
307 3bge_A Predicted ATPase; struc 39.0 1.6E+02 0.0053 24.0 9.4 34 376-409 19-52 (201)
308 3ctd_A Putative ATPase, AAA fa 38.9 1.6E+02 0.0056 24.2 8.9 36 273-308 49-84 (213)
309 2xig_A Ferric uptake regulatio 38.3 34 0.0011 26.5 4.1 52 475-526 29-80 (150)
310 3ctd_A Putative ATPase, AAA fa 37.9 1.7E+02 0.0058 24.1 9.3 57 376-432 47-108 (213)
311 2zu6_B Programmed cell death p 37.7 2.2E+02 0.0074 25.2 12.2 67 437-507 169-237 (307)
312 4b4t_S RPN3, 26S proteasome re 36.1 3E+02 0.01 26.5 12.6 61 117-180 232-299 (523)
313 2fe3_A Peroxide operon regulat 36.1 36 0.0012 26.2 3.9 60 466-526 16-75 (145)
314 3kea_A K1L; tropism, ANK repea 35.9 1.6E+02 0.0054 25.4 8.8 62 334-400 163-224 (285)
315 2b7e_A PRE-mRNA processing pro 34.9 41 0.0014 21.1 3.2 29 133-161 3-31 (59)
316 2xig_A Ferric uptake regulatio 34.5 1.6E+02 0.0053 22.7 7.6 45 369-413 31-75 (150)
317 3t8k_A Uncharacterized protein 33.7 1.8E+02 0.0061 23.1 10.5 64 193-258 42-108 (186)
318 2npm_A 14-3-3 domain containin 33.1 2.3E+02 0.0079 24.2 12.5 50 450-500 172-226 (260)
319 2wvi_A Mitotic checkpoint seri 32.9 1.8E+02 0.0061 22.9 9.6 45 418-462 79-124 (164)
320 3pvs_A Replication-associated 32.8 3.2E+02 0.011 25.7 16.4 106 43-150 167-289 (447)
321 2o03_A Probable zinc uptake re 32.8 87 0.003 23.4 5.6 46 121-166 15-60 (131)
322 4aez_C MAD3, mitotic spindle c 32.8 92 0.0032 26.0 5.9 52 168-219 131-183 (223)
323 3jxi_A Vanilloid receptor-rela 32.6 45 0.0015 28.3 4.5 18 163-180 14-31 (260)
324 4ets_A Ferric uptake regulatio 32.6 1E+02 0.0036 24.1 6.2 70 134-204 15-87 (162)
325 3hra_A Ankyrin repeat family p 31.9 1E+02 0.0035 24.5 6.5 12 198-209 14-25 (201)
326 1wgl_A TOLL-interacting protei 31.7 52 0.0018 20.6 3.3 48 450-506 9-57 (59)
327 2fu4_A Ferric uptake regulatio 31.6 52 0.0018 22.0 3.8 60 466-526 11-71 (83)
328 2fe3_A Peroxide operon regulat 31.1 1.7E+02 0.006 22.2 7.7 61 142-203 13-73 (145)
329 2ion_A PDCD4, programmed cell 31.0 1E+02 0.0035 23.9 5.7 23 369-391 14-36 (152)
330 3pvs_A Replication-associated 30.9 3.4E+02 0.012 25.5 14.5 38 376-413 267-304 (447)
331 2w57_A Ferric uptake regulatio 30.8 48 0.0016 25.6 3.8 60 466-526 11-71 (150)
332 3hra_A Ankyrin repeat family p 30.5 1.2E+02 0.0043 24.0 6.8 13 127-139 13-25 (201)
333 2qx5_A Nucleoporin NIC96; mRNA 30.4 4.3E+02 0.015 26.5 20.2 43 118-162 155-197 (661)
334 2ijq_A Hypothetical protein; s 30.0 2E+02 0.0068 22.5 8.4 52 376-427 44-103 (161)
335 2w57_A Ferric uptake regulatio 29.9 1.7E+02 0.0058 22.4 6.9 61 142-203 8-69 (150)
336 3eyy_A Putative iron uptake re 29.9 57 0.0019 25.0 4.1 59 466-526 13-71 (145)
337 4fke_A Aminopeptidase N; zinc 29.4 5.2E+02 0.018 27.1 17.5 162 333-501 690-860 (909)
338 3ltj_A Alpharep-4; protein eng 29.3 2.2E+02 0.0074 22.7 19.8 170 292-484 26-195 (201)
339 2qx5_A Nucleoporin NIC96; mRNA 29.2 4.5E+02 0.015 26.3 17.4 81 300-391 300-383 (661)
340 3mwm_A ZUR, putative metal upt 28.9 91 0.0031 23.6 5.1 43 158-200 20-62 (139)
341 1mzb_A Ferric uptake regulatio 28.5 1.9E+02 0.0064 21.7 7.1 61 142-203 9-70 (136)
342 3eyy_A Putative iron uptake re 27.3 1.8E+02 0.006 22.2 6.5 59 142-202 10-68 (145)
343 3jxi_A Vanilloid receptor-rela 27.1 40 0.0014 28.7 3.2 16 445-460 233-248 (260)
344 1k1a_A B-cell lymphoma 3-encod 26.4 2.6E+02 0.0088 22.9 8.3 17 271-287 18-34 (241)
345 2ijq_A Hypothetical protein; s 26.1 2.4E+02 0.0081 22.1 8.4 53 410-462 43-103 (161)
346 3kae_A CDC27, possible protein 26.1 2.5E+02 0.0085 22.4 7.5 35 468-502 202-238 (242)
347 1ug3_A EIF4GI, eukaryotic prot 25.5 3.7E+02 0.013 24.1 9.6 239 120-376 15-256 (339)
348 4aez_C MAD3, mitotic spindle c 24.8 3E+02 0.01 22.9 13.3 53 133-185 131-184 (223)
349 4g8k_A 2-5A-dependent ribonucl 24.1 3.2E+02 0.011 24.0 8.9 15 195-209 174-188 (337)
350 4gq2_M Nucleoporin NUP120; bet 23.5 3.8E+02 0.013 28.3 10.2 133 335-486 816-950 (950)
351 2chq_A Replication factor C sm 23.2 3.7E+02 0.013 23.3 15.8 96 44-148 164-260 (319)
352 1n11_A Ankyrin; clathrin, BAND 22.7 4.1E+02 0.014 24.4 9.7 200 124-352 19-232 (437)
353 2fu4_A Ferric uptake regulatio 22.3 1.7E+02 0.006 19.2 6.9 59 142-201 8-67 (83)
354 2crb_A Nuclear receptor bindin 22.1 1.7E+02 0.006 20.2 4.7 20 477-496 20-39 (97)
355 2nsz_A Programmed cell death p 21.9 2.5E+02 0.0085 20.9 9.4 22 299-320 12-33 (129)
356 3d5l_A Regulatory protein RECX 21.8 3.4E+02 0.012 22.4 9.9 52 380-432 92-143 (221)
357 3eu9_A Huntingtin-interacting 21.7 1.7E+02 0.0058 23.9 6.2 16 266-281 46-61 (240)
358 4fke_A Aminopeptidase N; zinc 21.3 7.2E+02 0.025 26.0 17.2 159 298-462 690-859 (909)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-38 Score=325.98 Aligned_cols=438 Identities=11% Similarity=0.020 Sum_probs=376.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 61 HSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
++...+..++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--------------------TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 56778999999999999999999999888754 2455778889999999999999999999
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChhHH
Q 047648 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR---------------RIELNLDSFNFVLNGLCKAGKLNKA 205 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a 205 (537)
++... +++..+++.++.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 98753 678999999999999999999999999853222 2234688999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHH--------------------------------------HHHHhcCCCCCCHHHHHHHH
Q 047648 206 SDIMEDMKSLGVSPKVVTYNIL--------------------------------------IDGYCKKGGIGKMYKADAVF 247 (537)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~~~~a~~~~ 247 (537)
.++|+++.+.+.. +...+..+ +..|.+ .|++++|.++|
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~ 295 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH---EDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC---cchHHHHHHHH
Confidence 9999999886422 33333333 334445 78899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 047648 248 KDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP 327 (537)
Q Consensus 248 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 327 (537)
+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998765 5789999999999999999999999999998765 3478899999999999999999999999998754 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
+..++..++..|.+.|++++|..+|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 7889999999999999999999999999886443 6889999999999999999999999999987654 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCCC--HHHHHHHHHHHHh
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWPN--IVTYNVLIKGFCQ 484 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~ 484 (537)
+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999875 567899999999999999999999999999875432 44676 7899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 485 KGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
.|++++|.++++++.+.+ +.+..+|..+...|.+.|++++|..++..
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999865 23778999999999999999998776544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-37 Score=317.30 Aligned_cols=440 Identities=12% Similarity=0.027 Sum_probs=378.8
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHH
Q 047648 38 NSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSI 117 (537)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 117 (537)
...++++.|+..|+.+... .|+..++..++.++.+.|++++|..+++.+... ++++.
T Consensus 95 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~ 151 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--------------------NRSSA 151 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--------------------GTCHH
T ss_pred HHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--------------------ccchh
Confidence 3456889999999999854 346688899999999999999999998866532 46678
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDY---------------GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI 182 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (537)
+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.++.+.|++++|.++|+++.+.++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999954322 2234688999999999999999999999999988753
Q ss_pred CCCHHHHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 183 ELNLDSFNFV--------------------------------------LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 183 ~~~~~~~~~l--------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
. +...+..+ +..|.+.|++++|.++|+++.+. +++..++
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 3 34443333 45566789999999999999876 5799999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGL 304 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (537)
+.++.+|.+ .|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+|..++.+|
T Consensus 309 ~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 309 LCKADTLFV---RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 999999999 99999999999999987533 77889999999999999999999999998653 45788999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+.++. +..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998864 456889999999999999999999999999887543 7889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCChHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG--LVTYNILVGALCKDGKSKKAVSLLD 458 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (537)
++|+++.+..+. +..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999987554 8899999999999999999999999999876 55677 7899999999999999999999999
Q ss_pred HHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 047648 459 EMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEM 517 (537)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 517 (537)
++++.. +.+..+|..++.+|.+.|++++|.+.++++++ +.|+. ..+..+...|
T Consensus 541 ~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 541 QGLLLS----TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHhC----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 998743 45889999999999999999999999999999 45654 4555544433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.5e-29 Score=239.45 Aligned_cols=382 Identities=13% Similarity=0.054 Sum_probs=326.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567888999999999999998864 4466777888888999999999999999988764 4478899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKV 281 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 281 (537)
+++|.+.|+++.+.. +.+..+|..+..++.. .|++++|.+.++++.+.+. .+...+..+...+...|++++|.+.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVA---AGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---HSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998863 2245678899999999 8999999999999987642 2456777888889999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 282 FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLS 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (537)
|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+.+..+..+.
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99998763 3367889999999999999999999999999864 446778899999999999999999999999887543
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 362 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+..++..+..++.+.|++++|...++++.+.++. ++.+|..+...+.+.|++++|...++++.+.. +.+..++..+.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 6788899999999999999999999999987654 67889999999999999999999999999874 67788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhc
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEK 520 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 520 (537)
..+...|++++|.+.++++++. .+.+..++..++.+|.+.|++++|...++++++ +.|+ ...+..+...+.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 9999999999999999999753 245688999999999999999999999999998 5565 46677777777665
Q ss_pred C
Q 047648 521 G 521 (537)
Q Consensus 521 g 521 (537)
|
T Consensus 387 ~ 387 (388)
T 1w3b_A 387 Q 387 (388)
T ss_dssp C
T ss_pred c
Confidence 5
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-28 Score=236.58 Aligned_cols=384 Identities=15% Similarity=0.088 Sum_probs=331.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCC
Q 047648 69 LLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLK 148 (537)
Q Consensus 69 l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 148 (537)
+...+.+.|++++|...+....+. .|.+...+..+...+...|++++|...++...+.. +
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 455667788888888888777665 15566778888899999999999999999998864 5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 149 SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILI 228 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 228 (537)
.+..+|..+...+.+.|++++|...|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+..+ .+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 6888999999999999999999999999988743 3677899999999999999999999999998742 2445667777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 229 DGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
..+.. .|++++|.+.|+++..... .+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|
T Consensus 143 ~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 143 NLLKA---LGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHT---TSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHH---ccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 78887 8999999999999988643 367899999999999999999999999998864 336778899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
++++|+..+.+..... +.+..++..+...+...|++++|...|+++.+.++. +..+|..+..++.+.|++++|...++
T Consensus 218 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998864 446788999999999999999999999999987544 67789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC
Q 047648 389 SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK 468 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (537)
++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++++..
T Consensus 296 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---- 369 (388)
T 1w3b_A 296 TALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 369 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----
T ss_pred HHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 9998754 488999999999999999999999999999864 5668899999999999999999999999998643
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047648 469 WPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~ 487 (537)
+.+...|..+...+...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 3467788888888776653
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.2e-30 Score=251.02 Aligned_cols=206 Identities=19% Similarity=0.282 Sum_probs=134.0
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC------CCCHHHH
Q 047648 171 EYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGG------IGKMYKA 243 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~a 243 (537)
..+.+.+.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .+..++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 33444444444443332 3556666666666666666666666666666666666666666655221 2335667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 047648 244 DAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 244 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (537)
.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 324 GLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
|+.||..+|+.+|.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777776654
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=9.6e-30 Score=249.13 Aligned_cols=203 Identities=15% Similarity=0.267 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC---------HHHH
Q 047648 244 DAVFKDMVENGILPNE-VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK---------LDEA 313 (537)
Q Consensus 244 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A 313 (537)
..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444443322 23555566666666666666666666666666666666666666655443 4666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777776667777777776666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.5e-25 Score=218.59 Aligned_cols=381 Identities=12% Similarity=-0.026 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..+......+.+.|++++|++.|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.++ .+..++..++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 344455556666666666666666666543 4555666666666666666666666666655432 2455566666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCC----------------------------------------------------------
Q 047648 197 CKAGKLNKASDIMEDMKSLGVS---------------------------------------------------------- 218 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~---------------------------------------------------------- 218 (537)
...|++++|...|+++.+.+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 6666666666666665544311
Q ss_pred -------------------C-ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 047648 219 -------------------P-KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE-----NGI--------LPNEVTFNTL 265 (537)
Q Consensus 219 -------------------~-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~~--------~p~~~~~~~l 265 (537)
| +...+......+......|++++|...++++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0 022222222222221126899999999999887 311 1235677888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
...+...|++++|...|+++.+... +...+..+..++...|++++|...++++.... +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 8899999999999999999887643 37888889999999999999999999998764 45677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
++|...++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887544 6678888999999999999999999999886544 6778889999999999999999999998
Q ss_pred HHCCCC-CC----hHHHHHHHHHHHh---cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 426 VNNGMR-AG----LVTYNILVGALCK---DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 426 ~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
.+.... ++ ...+..+..++.. .|++++|.+.++++++.. +.+..++..+..+|...|++++|...+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 875311 11 3388899999999 999999999999998743 34678889999999999999999999999
Q ss_pred HHHcCCCCCHHhHH
Q 047648 498 LLEKGLIPNQTTYQ 511 (537)
Q Consensus 498 ~~~~g~~p~~~~~~ 511 (537)
+.+ +.|+.....
T Consensus 475 a~~--~~~~~~~~~ 486 (514)
T 2gw1_A 475 SAD--LARTMEEKL 486 (514)
T ss_dssp HHH--HCSSHHHHH
T ss_pred HHH--hccccHHHH
Confidence 998 457654443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.5e-23 Score=206.09 Aligned_cols=375 Identities=11% Similarity=0.016 Sum_probs=219.9
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+...+..++..+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++.+.+.. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 6677889999999999999999999999998864 557889999999999999999999999999887543 68889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHH------------HhcCCCCCCHHHHHHHHHHHHHCCCC
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDG------------YCKKGGIGKMYKADAVFKDMVENGIL 256 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (537)
+.+|.+.|++++|.+.|+++.+.. |+. ..+..+... +.. .|++++|+..++++.+.. +
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFG---SGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999998863 333 444444333 444 455555655555555432 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI 336 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 336 (537)
.+..++..+..+|.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.... +.+...+..+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 244555555555555555555555555554432 2244555555555555555555555555555432 11222222220
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD----VSTYNCLIAGLSRE 412 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 412 (537)
.. . ....+..++..+...|++++|...++++.+..+. + ...+..+...+.+.
T Consensus 253 ~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 253 QV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTT
T ss_pred HH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHC
Confidence 00 0 0000011144455555555555555555443211 1 22444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH------------H
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI------------K 480 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~------------~ 480 (537)
|++++|...++++.+.. +.+..+|..+..+|...|++++|.+.|++++++. +.+...+..+. .
T Consensus 309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN----ENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHhhcccchh
Confidence 55555555555554432 2344555555555555555555555555554322 12333444443 2
Q ss_pred HHHhcC-----CHHHHHHHHHH-HHHcCCCCC-----------HHhHHHHHHHHHhcCCcCCccC
Q 047648 481 GFCQKG-----KLEDANGLLNE-LLEKGLIPN-----------QTTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 481 ~~~~~g-----~~~~A~~~~~~-~~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~a~~ 528 (537)
.|...| +.+++.+.+++ .++ ..|| ...+..+..+|...|+-+....
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 244333 56777777776 333 2232 1256667777777776555443
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-23 Score=210.49 Aligned_cols=372 Identities=11% Similarity=-0.006 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRA 142 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 142 (537)
...+......+.+.|++++|...++.+++. .|++..+..++.+|.+.|++++|++.|+++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--------------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 345677888888999999999999888876 246778889999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC---------------------------------------
Q 047648 143 GDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE--------------------------------------- 183 (537)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------------- 183 (537)
.+.+ +.+..++..+..++.+.|++++|...|+.+.+.+..
T Consensus 66 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9875 456788999999999999999999999998776421
Q ss_pred ---------------------------------------CCHHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----CC
Q 047648 184 ---------------------------------------LNLDSFNFVLNGLCK---AGKLNKASDIMEDMKS-----LG 216 (537)
Q Consensus 184 ---------------------------------------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~ 216 (537)
.+...+......+.. .|++++|...|+++.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 013333444444444 8999999999999988 31
Q ss_pred CCC--------ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 217 VSP--------KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 217 ~~~--------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
-.| +..++..+...+.. .|++++|...++++...+. +...+..+...+...|++++|...++++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFL---KNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred cCccccccChHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 122 34567788888888 8999999999999988643 3888899999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHH
Confidence 4 3467789999999999999999999999999864 446778899999999999999999999999887443 667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSR---EGNVEGVRNIMNELVNNGMRAGLVTYNIL 440 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (537)
.+..++...|++++|...++++.+..+. ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 9999999999999999999999875322 11 3488899999999 999999999999999875 5567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHch
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
..+|.+.|++++|.+.|+++++..
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999999998743
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.3e-23 Score=203.72 Aligned_cols=336 Identities=14% Similarity=0.071 Sum_probs=233.6
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047648 138 AFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV 217 (537)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 217 (537)
.+.+..... +.+...+..++..+.+.|++++|..+|+.+.+.. +.+..++..++.++...|++++|...|+++.+.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444332 4466677778888888888888888888877653 3367777788888888888888888888887764
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE---VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV 294 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 294 (537)
+.+..++..+..+|.+ .|++++|.+.|+++...... +. ..+..++..+..
T Consensus 91 p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLK---QGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred CCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 2256677777777777 77888888888877765321 23 444444333111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
..+..+...+...|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+..+. +..++..++.+|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 012223344556677777777777766643 345666667777777777777777777776655322 566677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hHHH
Q 047648 375 CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL------------IAGLSREGNVEGVRNIMNELVNNGMRAG-----LVTY 437 (537)
Q Consensus 375 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~ 437 (537)
...|++++|...++++.+..+. +...+..+ ...+...|++++|...|+++.+.. |+ ...+
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence 7777777777777777665333 34444433 888999999999999999999864 43 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHH
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVR 514 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~ 514 (537)
..++.++.+.|++++|++.++++++.. +.+..+|..++.+|...|++++|...++++++ +.|+. ..+..+.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 899999999999999999999998643 44789999999999999999999999999998 56765 4444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=5.2e-23 Score=207.17 Aligned_cols=405 Identities=11% Similarity=0.026 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRA 142 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 142 (537)
...+..+...+.+.|++++|...++..++. .|.++..+..+..+|.+.|++++|++.|+++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455677888888888888888888887765 1567789999999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------
Q 047648 143 GDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG------ 216 (537)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 216 (537)
.+.+ +.+..++..+..++...|++++|...|+ ..... |+ .....+..+...+...+|...++++....
T Consensus 86 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 86 LEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9875 4578889999999999999999999996 33332 22 22223445556666678888888875531
Q ss_pred CCCChh------------------------------hHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHCCCCCC---
Q 047648 217 VSPKVV------------------------------TYNILIDGYCKKG-----GIGKMYKADAVFKDMVENGILPN--- 258 (537)
Q Consensus 217 ~~~~~~------------------------------~~~~ll~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~p~--- 258 (537)
..|+.. ....+...+.... ..+++++|..+++++.+.... +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 112211 1122222222100 014788899999998875322 2
Q ss_pred ----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 259 ----EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 259 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
..++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|.+.+.++.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 235677778888999999999999999886 4557888899999999999999999999998864 456788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+...+...|++++|...++++.+..+. +...+..+..++...|++++|...++++.+..+. +...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCC
Confidence 999999999999999999999887544 5678889999999999999999999999987544 67789999999999999
Q ss_pred HHHHHHHHHHHHHCCC-----CCChHHHHHHHHHHHhc----------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGM-----RAGLVTYNILVGALCKD----------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
+++|...++++.+... ......+.....++... |++++|...|+++++.. +.+..++..+.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~l~ 469 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----PRSEQAKIGLA 469 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 9999999999887521 11223345556778888 99999999999998743 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 047648 480 KGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
.+|...|++++|.+.|+++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999943
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=7.4e-23 Score=206.04 Aligned_cols=399 Identities=12% Similarity=0.048 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4677889999999999999999999999875 557889999999999999999999999999987643 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC------CCCCCHH---------
Q 047648 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN------GILPNEV--------- 260 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~--------- 260 (537)
+...|++++|.+.|+ .... .|+.. ...+..+.. .+...+|...++++... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLE---RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHH---HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHH---HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999997 3333 22221 112223333 34556777777776432 1112221
Q ss_pred ---------------------HHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCC-------hhhHHHHHHHH
Q 047648 261 ---------------------TFNTLIDGFCK--------DENISAAMKVFEEMGSHGIAAG-------VVTYNSLINGL 304 (537)
Q Consensus 261 ---------------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 304 (537)
....+...+.. .|++++|..+|+++.+.... + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 12222222222 24789999999999876322 2 23466777888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+..++...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999986 456888999999999999999999999999887544 7888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
..++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++++..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999987654 67889999999999999999999999999875 5667899999999999999999999999998865
Q ss_pred hcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 465 KEKKWP--NIVTYNVLIKGFCQK----------GKLEDANGLLNELLEKGLIP-NQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 465 ~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
+..... ....+..+..++... |++++|...++++++.. | +...+..+...+.+.|++++|...+.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 443222 233455666778888 99999999999999853 4 56788999999999999999876654
Q ss_pred c
Q 047648 532 N 532 (537)
Q Consensus 532 ~ 532 (537)
.
T Consensus 487 ~ 487 (537)
T 3fp2_A 487 D 487 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.1e-19 Score=172.69 Aligned_cols=329 Identities=13% Similarity=0.067 Sum_probs=214.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDG 230 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 230 (537)
+..+..+...+...|++++|...|+.+.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 44556666667777777777777777666532 256666666677777777777777777766653 1244556666666
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 231 YCKKGGIGKMYKADAVFKDMVENGIL--PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
+.. .|++++|...+++..+.... .+...+..+..... ...+..+...+...|
T Consensus 81 ~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLK---QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHH---HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHH---cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666 66666777766666654210 12222222211100 011222345666777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776653 345666777777777777777777777777665433 56677777777777777777777777
Q ss_pred HHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChHH
Q 047648 389 SMLDRGVLPDVSTYN------------CLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKDGKSKK 452 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 452 (537)
+..+..+. +...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 77765433 333332 23566788899999999998888764 2233 235567788889999999
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEM 517 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 517 (537)
|.+.++++++.. +.+..+|..+..++...|++++|...++++++ +.|+. ..+..+..+.
T Consensus 291 A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 291 AIRICSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 999999988642 34778888899999999999999999999988 45664 4444444443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.1e-19 Score=172.61 Aligned_cols=333 Identities=10% Similarity=-0.013 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
++..+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34667788999999999999999999999874 457889999999999999999999999999887533 7788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVS--PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
++...|++++|...|+++.+.... .+...+..+.... . ...+..+...+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~----------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD----------E----------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH----------H----------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH----------H----------------HHHHHHHHHHHHHc
Confidence 999999999999999999886320 1233333331100 0 01122233444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 2234445555555555555555555555555432 334455555555555555555555555
Q ss_pred HHHHHcCCCCCHhHH------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 047648 353 DDISEQGLSPSVITY------------NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV----STYNCLIAGLSREGNVE 416 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 416 (537)
++..+..+. +...+ ..+...+.+.|++++|...++++.+..+. +. ..+..+...+...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 555544222 22222 12355677788888888888887775433 33 23445677778888888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+|...+++..+.. +.+..++..+..++...|++++|.+.|++++++. +.+...+..+..+...
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN----ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHH
Confidence 8888888887763 4467778888888888888888888888887543 3356666666666544
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.2e-18 Score=171.54 Aligned_cols=422 Identities=10% Similarity=-0.003 Sum_probs=306.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHc
Q 047648 50 FCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKN 129 (537)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (537)
|+..++. .|.+..++..++.. ...|++++|..+++.+++. .|.+...|...+..+.+.
T Consensus 2 le~al~~--~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHT
T ss_pred hhhHhhh--CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhc
Confidence 3444454 57788889888884 7788999999988888876 366778999999999999
Q ss_pred CCchHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh----
Q 047648 130 MKPHLGFEAFKRAGDYGLKSSVLSCNQLLRAL-VKEGKFEDVEY----VYKEMKR-RRIEL-NLDSFNFVLNGLCK---- 198 (537)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---- 198 (537)
|++++|..+|++++... |++..|...+... ...|+.++|.+ +|+.... .|..| +...|...+.....
T Consensus 60 ~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 99999999999999863 5777888777533 45678777765 6766654 34333 56678777776654
Q ss_pred -----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----------CCCCCCHHHHHHHHHHHH------HCC---
Q 047648 199 -----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK----------KGGIGKMYKADAVFKDMV------ENG--- 254 (537)
Q Consensus 199 -----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~~~~a~~~~~~~~------~~~--- 254 (537)
.|+++.|..+|++..+....+....|......... ....+++.+|..+++.+. +..
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred ccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 78999999999999883111112334332221100 001356677777766532 111
Q ss_pred CCCC--------HHHHHHHHHHHhcc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------CCCHH
Q 047648 255 ILPN--------EVTFNTLIDGFCKD----ENI----SAAMKVFEEMGSHGIAAGVVTYNSLINGLCV-------DGKLD 311 (537)
Q Consensus 255 ~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~ 311 (537)
++|+ ...|...+...... ++. +.+..+|+++.... +.+...|...+..+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 2443 24555554433221 232 47788899887752 3467888888887775 79987
Q ss_pred -------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCChHHH
Q 047648 312 -------EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV-ITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 312 -------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 383 (537)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. +. ..|...+..+.+.|++++|
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHH
Confidence 89999999986323446788999999999999999999999999986332 33 5888889989999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
..+|++..+.... +...|...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|++++.
T Consensus 376 ~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 9999999986432 33333333222 346899999999999998864 45688999999999999999999999999986
Q ss_pred chhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 463 MEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 463 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+ ..| ....|...+......|+.+.+..+.+++.+.
T Consensus 454 ~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 322 233 3558888898888999999999999999883
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6.4e-17 Score=160.38 Aligned_cols=357 Identities=14% Similarity=0.069 Sum_probs=284.8
Q ss_pred chHHHHHHHHHHHHH----cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCC
Q 047648 114 RNSIIIDMLMLAYVK----NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELN 185 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 185 (537)
.++..+..+...|.. .+++++|++.|++..+.| +..++..+...+.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 345666677777887 889999999999988764 56778888888888 889999999999988765 6
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCCHH
Q 047648 186 LDSFNFVLNGLCK----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPNEV 260 (537)
Q Consensus 186 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~ 260 (537)
...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... +-.++.++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777778888887 789999999999988875 566677777777641 11478899999999888764 667
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 261 TFNTLIDGFCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 261 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
.+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888877 789999999999988764 56677777777775 788999999999888754 45666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 047648 333 NALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE-----GRMEDAFAMRNSMLDRGVLPDVSTYN 403 (537)
Q Consensus 333 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~ 403 (537)
..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 788999999999887764 556777788888877 88999999999988875 556777
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 404 CLIAGLSREG---NVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 404 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|+++.+ ..+...+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~------~~~~~a~~ 403 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE------QGLSAAQV 403 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh------CCCHHHHH
Confidence 7777777766 7888999999988864 56788888888888 8899999999999876 23567888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 047648 477 VLIKGFCQ----KGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 477 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 503 (537)
.+...|.. .+++++|...|++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88888887 8899999999999988663
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.2e-19 Score=165.92 Aligned_cols=291 Identities=11% Similarity=-0.037 Sum_probs=187.9
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (537)
.+...+..+...+.. .|++++|+++++++..... .+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 20 ~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYY---NCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHH---TTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 344555555555555 5666666666666655432 234445555566666666666666666665542 22455666
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 299 SLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 299 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
.+...+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 6666666666 6667777776666543 334556666667777777777777777776665433 345555677777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChHHHHHHHHHHHhcCC
Q 047648 378 GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG--------MRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~ 449 (537)
|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 7777777777777766443 56677777777777777777777777776531 13335677778888888888
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH-HhcCCc
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIVREEM-MEKGFI 523 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~g~~ 523 (537)
+++|.+.++++++.. +.+...|..+..++...|++++|...++++++ +.|+ ...+..+...+ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 888888888887643 33567777888888888888888888888776 4454 45555555555 344443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.7e-19 Score=166.89 Aligned_cols=292 Identities=10% Similarity=-0.028 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+.. .|++++|...++++.+... .+...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE---LNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH---HTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH---hhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 44455556666666666666666666666553 2234455555555655 5667777776666665422 24556666
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 265 LIDGFCKDE-NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 265 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
+...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 666666666 6777777777766543 2245566677777777777777777777776653 233455666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--------VLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~ 415 (537)
++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 777777777777665433 56677777777778888888888777776531 123456777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH-HhcCCHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF-CQKGKLE 489 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 489 (537)
++|...+++..+.. +.+...+..+..++...|++++|.+.|+++++.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC----SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC----CCchHHHHHHHHHHHHHhCchh
Confidence 88888888888764 4566778888888888888888888888886532 34667777777777 4455543
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.7e-16 Score=157.38 Aligned_cols=399 Identities=14% Similarity=0.046 Sum_probs=318.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHH
Q 047648 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVV----AKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDM 121 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (537)
++..+..... +.+..++..+...+.. .+++++|...++...+.| ++..+..
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~ 80 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYV 80 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHH
Confidence 3455555443 2467778888888887 788999999888877663 2456667
Q ss_pred HHHHHHH----cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 122 LMLAYVK----NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 122 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
|...|.. .+++++|++.|++..+.| +..++..+...+.. .+++++|...|++..+.| +...+..+.
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg 154 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMG 154 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 8888988 999999999999999865 66778888888888 889999999999998875 677888888
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047648 194 NGLCK----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK-KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDG 268 (537)
Q Consensus 194 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 268 (537)
..|.. .++.++|.+.|++..+.| +...+..+...|.. .+..++.++|.+.|++..+.| +...+..+...
T Consensus 155 ~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 228 (490)
T 2xm6_A 155 DAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADM 228 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88887 789999999999999875 67777777777765 122588999999999998875 56778888888
Q ss_pred Hhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 269 FCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 269 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..+...|.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 876 789999999999998864 56677778788877 899999999999998764 5667778888888
Q ss_pred hc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 047648 341 KK-----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG---RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR- 411 (537)
Q Consensus 341 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 411 (537)
.. +++++|...|++..+.+ +...+..+...|...| ++++|.+.+++..+.+ ++..+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 87 89999999999998875 5567778888888766 7899999999999874 77888999999988
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHH
Q 047648 412 ---EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFC 483 (537)
Q Consensus 412 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 483 (537)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|+++.+.... .| +......+...+.
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~--~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN--LFGTENRNITEKKLTA 451 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHTTSCH
T ss_pred CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC--CcCCHHHHHHHHhcCH
Confidence 899999999999999875 57788889999998 89999999999999874411 12 3444444433332
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047648 484 QKGKLEDANGLLNELLE 500 (537)
Q Consensus 484 ~~g~~~~A~~~~~~~~~ 500 (537)
.+.+.+.+..++..+
T Consensus 452 --~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 452 --KQLQQAELLSQQYIE 466 (490)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHH
Confidence 234555555555544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.3e-19 Score=170.14 Aligned_cols=294 Identities=11% Similarity=0.028 Sum_probs=199.5
Q ss_pred hcCChhHHHH-HHHHHHhCCCC-C--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 198 KAGKLNKASD-IMEDMKSLGVS-P--KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 198 ~~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
..|++++|.+ .+++....... | +...+..+...+.. .|++++|+..++++.+.. +.+..++..+...+.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ---EGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH---TTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3456666666 55544432111 1 24455566666666 667777777777766653 225566666666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA---------------LING 338 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------ll~~ 338 (537)
++++|...|+++.+.. +.+..++..+..++...|++++|++.++++..... .+...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 7777777777666543 23556666666777777777777777777666431 11111111 1333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
+...|++++|...++++.+..+.. +..++..+..+|...|++++|...++++.+..+. +..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 337888999999998888764332 4778888888999999999999999998876543 67888889999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC-------CHHHHHHHHHHHHhcCCHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP-------NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~ 490 (537)
|...++++.+.. +.+..++..+..+|.+.|++++|...|++++++.+....| ...+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999988864 5567888889999999999999999999998766543222 26788999999999999999
Q ss_pred HHHHHHHHH
Q 047648 491 ANGLLNELL 499 (537)
Q Consensus 491 A~~~~~~~~ 499 (537)
|..++++.+
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 988877543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=9.5e-17 Score=160.81 Aligned_cols=406 Identities=12% Similarity=0.053 Sum_probs=294.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+..+|..++. +.+.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 567788999998 48899999999999999986 46678899999999999999999999999999874 588888777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHCCCCCCH
Q 047648 193 LNGL-CKAGKLNKASD----IMEDMKSL-GVSP-KVVTYNILIDGYCKKG------GIGKMYKADAVFKDMVENGILPNE 259 (537)
Q Consensus 193 ~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~------~~~~~~~a~~~~~~~~~~~~~p~~ 259 (537)
+... ...|+.+.|.+ +|++.... |..| +...|...+....... ..|++++|..+|++.......+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45688887765 77766543 5444 4566777666543310 047889999999998873111112
Q ss_pred HHHHHHHHHH-------------hccCCHHHHHHHHHHH------HhCC---CCCC--------hhhHHHHHHHHHhC--
Q 047648 260 VTFNTLIDGF-------------CKDENISAAMKVFEEM------GSHG---IAAG--------VVTYNSLINGLCVD-- 307 (537)
Q Consensus 260 ~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~-- 307 (537)
..|....... .+.+++..|..++..+ .+.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3343322211 1345677888777763 2221 2333 23455544333222
Q ss_pred --CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHhHH
Q 047648 308 --GKL----DEAVALRDEMMASGLKPNVVTSNALINGFCK-------KKLVE-------KARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 308 --~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~ 367 (537)
++. +.+..+|++++... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47888999988863 4567888888888775 68887 899999999863223368889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV-STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LC 445 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 445 (537)
..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 99999999999999999999999986433 33 589999999999999999999999999863 3334444333322 34
Q ss_pred hcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHhHHHHHHHHHhcCC
Q 047648 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL-IPN--QTTYQIVREEMMEKGF 522 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~ 522 (537)
..|++++|+.+|+++++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...++...+.|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999998744 34688999999999999999999999999998642 332 3477777887888888
Q ss_pred cCCccCC
Q 047648 523 IPDIEGH 529 (537)
Q Consensus 523 ~~~a~~~ 529 (537)
.+.+..+
T Consensus 479 ~~~~~~~ 485 (530)
T 2ooe_A 479 LASILKV 485 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.8e-18 Score=164.95 Aligned_cols=309 Identities=10% Similarity=-0.011 Sum_probs=190.6
Q ss_pred HHHcCCchHHHH-HHHHHhhCCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 126 YVKNMKPHLGFE-AFKRAGDYGLK---SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 126 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+.-.|++++|++ .|++....... .+...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 444577888887 77766554211 1345677778888888888888888888887643 367778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKV 281 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 281 (537)
+++|.+.|+++.+.. +.+..++..+...+.. .|++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~---- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTN---ESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG---- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSTT-TGGGCC------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----
Confidence 888888888887764 2366677777777777 78888888888887765322 22222111000 00
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 282 FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQGL 360 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 360 (537)
. .. ....+. .+..+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+..+
T Consensus 178 ---~----~~-~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 178 ---G----AG-LGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp ----------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---h----hc-ccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 0 00 000111 1222236667777777777766653111 456666777777777777777777777666533
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------
Q 047648 361 SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR--------- 431 (537)
Q Consensus 361 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 431 (537)
. +...+..+..++...|++++|...++++.+..+. +..++..+..++...|++++|...|+++.+....
T Consensus 249 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 249 N-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 2 5566777777777777777777777777665433 5667777777777777777777777777664211
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 432 -AGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 432 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
....+|..+..+|...|++++|..++++.++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 1156777888888888888888777765543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2.6e-18 Score=163.68 Aligned_cols=267 Identities=12% Similarity=-0.000 Sum_probs=182.1
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI 301 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (537)
..+..+...+.+ .|++++|+..|+++..... .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 66 ~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 66 PGAFEEGLKRLK---EGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTHHHHHHHHHH---HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 335555555555 5555555555555554422 245555556666666666666666666655542 22455566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhHHHH
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPN-----------VVTSNALINGFCKKKLVEKARVLFDDISEQGLS-PSVITYNT 369 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 369 (537)
.+|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+..+. ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 66666666666666666665532 21 223344577788888888888888888876433 15778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
+...|...|++++|...++++.+..+. +..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 888999999999999999998887544 78889999999999999999999999988864 4557888999999999999
Q ss_pred hHHHHHHHHHHHHchhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWP--------NIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+++|...|++++++.+....+ +...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998876553332 367899999999999999988877665
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.6e-18 Score=165.21 Aligned_cols=264 Identities=10% Similarity=-0.019 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999998864 3478899999999999999999999999999864 456889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSP---------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PDVSTYNCLIA 407 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~ 407 (537)
+|...|++++|...++++.+..+.. ....+..+...+...|++++|...++++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999998753220 1222344588899999999999999999987543 26889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
.+...|++++|...++++.+.. +.+..++..+..+|...|++++|++.|+++++.. +.+..+|..+..+|...|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999875 5678899999999999999999999999998753 3468899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhcCCcCCccCCC
Q 047648 488 LEDANGLLNELLEKGLIPN-------------QTTYQIVREEMMEKGFIPDIEGHM 530 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~l 530 (537)
+++|...++++++.. |+ ...|..+..++...|+.+.+....
T Consensus 297 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 297 YREAVSNFLTALSLQ--RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CHHHHHHHHHHHHHH--HCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999998742 32 577889999999999987765443
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.1e-17 Score=160.56 Aligned_cols=368 Identities=12% Similarity=-0.015 Sum_probs=250.7
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhC--------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-----C
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY--------GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-----R 181 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 181 (537)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..++...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3578999999999999999999999988653 12334568999999999999999999999887642 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 182 --IELNLDSFNFVLNGLCKA--GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 182 --~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
......++.....++... +++++|++.|++..+..+. +...+..+..++.+.+..++.++|++.+++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 112456676666666554 5799999999999886422 444555555444332225777788999988877532 2
Q ss_pred CHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047648 258 NEVTFNTLIDGFC----KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSN 333 (537)
Q Consensus 258 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 333 (537)
+..++..+...+. ..|++++|.+++++..... +.+...+..+...|...|++++|+..+.++.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5566665554444 3567899999999987764 3467788899999999999999999999998864 34556666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 334 ALINGFCKK-------------------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 334 ~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
.+..+|... +..+.|...+++..+..+. +...+..+...|...|++++|...|++.++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666655432 2356777888887776443 56678889999999999999999999998875
Q ss_pred CCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 395 VLPDVS--TYNCLIA-GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 395 ~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
+.|... .+..+.. .....|+.++|+..|++.++.. |+...... ....+.+++++.++.. +.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~----p~~ 429 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN----GAD 429 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC----C-C
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC----CCC
Confidence 543321 2333332 2356789999999999998863 44332222 2234455666665432 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
..+|..+..+|...|++++|++.|++.++.|
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999854
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-16 Score=156.89 Aligned_cols=389 Identities=8% Similarity=-0.057 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHH
Q 047648 58 RASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 137 (537)
+.+....+|+.+..++...|++++|...++..++. +...... ...+....+|..+..+|...|++++|..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~---------~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEEL---------IQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34455677999999999999999999988876542 1111111 1124456889999999999999999999
Q ss_pred HHHHHhhCC-------CCCChhhHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHH
Q 047648 138 AFKRAGDYG-------LKSSVLSCNQLLRALVKE--GKFEDVEYVYKEMKRRRIELNLDSFNFVLNG---LCKAGKLNKA 205 (537)
Q Consensus 138 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a 205 (537)
.|+++.+.. ......++.....++.+. +++++|.+.|++..+..+. +...+..+..+ +...++.++|
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHH
Confidence 999886531 112345566666556554 5699999999999887533 55566555554 4456888999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047648 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEE 284 (537)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 284 (537)
++.+++..+... .+..++..+...+... ...++.++|.+.+++...... .+..++..+...|...|++++|...|++
T Consensus 195 l~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 195 IDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 999999887642 2455555555444431 115678899999999887643 3678889999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 285 MGSHGIAAGVVTYNSLINGLCVD-------------------GKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
..+.. +.+..++..+..+|... +.++.|...+++..... +.+..++..+...+...|++
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 98763 23566666666555322 23567888888887754 44567788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVI--TYNTLID-AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++|...|++..+....+... .+..+.. .+...|++++|+..+++.++..+ +..... +....+.+++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~ 419 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHH
Confidence 99999999998875443321 2333332 23578999999999999998643 322221 1223455666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHH
Q 047648 423 NELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTY 475 (537)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (537)
++.+..+ +.+..+|..+..+|...|++++|++.|++++++.+. .|+..+|
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~--~p~a~~~ 469 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL--IPSASSW 469 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCcHhhc
Confidence 6666654 667889999999999999999999999999975433 4555444
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.3e-18 Score=162.32 Aligned_cols=237 Identities=15% Similarity=0.142 Sum_probs=58.0
Q ss_pred cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047648 129 NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDI 208 (537)
Q Consensus 129 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 208 (537)
.|+.++|.++++++. +..+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555555555441 1124445555555555555555555321 2444455555555555555555554
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 209 MEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
++...+. .+++.+.+.++.+|.+ .|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~K---lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAK---TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHh--CccchhHHHHHHHHHH---hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 4443332 2234444445555555 455544444442 134445555555555555555555555433
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 23455555555555555555555544 13445555555555555555553322221 11222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS 410 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 410 (537)
.++..|.+.|++++|..+++..+... +.....|+-+...|+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 44455555555555555555554433 223444444444444
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.4e-17 Score=154.27 Aligned_cols=159 Identities=12% Similarity=0.030 Sum_probs=125.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 66677888888888888776443 6777888888888888888888888888876543 677888888888889999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--------CHHHHHHHHHHHHhcCCHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--------NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~ 490 (537)
...++++.+.. +.+...+..+..++...|++++|.+.++++++..+....+ +..+|..+..++...|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99998888764 4567788888899999999999999999888754331111 46788889999999999999
Q ss_pred HHHHHHHHHH
Q 047648 491 ANGLLNELLE 500 (537)
Q Consensus 491 A~~~~~~~~~ 500 (537)
|..++++.++
T Consensus 305 A~~~~~~~l~ 314 (327)
T 3cv0_A 305 VELTYAQNVE 314 (327)
T ss_dssp HHHHTTCCSH
T ss_pred HHHHHHHHHH
Confidence 9988876543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.6e-17 Score=155.40 Aligned_cols=264 Identities=10% Similarity=-0.006 Sum_probs=194.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666665542 2245556666666666666666666666666543 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTL--------------ID-AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
..|++++|...++++.+..+. +...+..+ .. .+...|++++|...++++.+..+. +..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 666666666666666654322 22222222 22 377889999999999999987654 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+..+|..+..++...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875 5568899999999999999999999999998743 34688999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----------CHHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 486 GKLEDANGLLNELLEKGLIP-----------NQTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
|++++|.+.++++.+....+ +...+..+...+.+.|+.++|..+....
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999843221 3678889999999999999887766544
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2e-14 Score=149.66 Aligned_cols=394 Identities=14% Similarity=0.129 Sum_probs=265.3
Q ss_pred HHhcCCCChHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCCchHHHHHH------------HHHHHCCCCCChHHH
Q 047648 35 QLFNSDADPVLILRYFCWSTKELR-ASHSLLLTGRLLHSLVVAKKYPKIRSFL------------HMFVKNGKFTSVSTI 101 (537)
Q Consensus 35 ~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~l~------------~~~~~~g~~~~~~~~ 101 (537)
..+...+.|..|+..++.+...+. +.....+-+.++....+. +..+...++ ..+...|.+++|..+
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 344466788888888888875433 334444555555555444 223333332 234455666666666
Q ss_pred HHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 047648 102 FHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR 181 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (537)
|+.... +....+.+ +...|++++|.++.++.. +..+|..+..++.+.|++++|...|.+.
T Consensus 1072 YkKa~~-------~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1072 FRKFDV-------NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHcCC-------HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 665431 11222222 226677888888877552 4667888889999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHH
Q 047648 182 IELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVT 261 (537)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 261 (537)
.|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++ .+++++.... .. .++...
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK---l~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK---TNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh---hcCHHHHHHH----Hh---CCCHHH
Confidence 277788888999999999999999998877653 344444458888888 6777653333 22 346667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777888888999999999999875 36888889999999999999888876 356788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--GNVEGVR 419 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~ 419 (537)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...+++. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888766543 2356677788899999999999999998887654 22455666666666653 3444555
Q ss_pred HHHHHHHHCCCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------hhcCCCCCHHHHHHHHHHHHhc
Q 047648 420 NIMNELVNNGMRA------GLVTYNILVGALCKDGKSKKAVSLLDEMFKM--------EKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 420 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
++|..-. ++++ +...|..++..|.+.|+++.|....-+-... ..-....|+..|...+..|...
T Consensus 1337 k~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1337 ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 5554332 2233 4567888999999999999888332221100 0001244777777777777754
Q ss_pred C
Q 047648 486 G 486 (537)
Q Consensus 486 g 486 (537)
+
T Consensus 1415 ~ 1415 (1630)
T 1xi4_A 1415 K 1415 (1630)
T ss_pred C
Confidence 4
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=8.7e-17 Score=147.05 Aligned_cols=252 Identities=14% Similarity=0.096 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNE--VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAV 314 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 314 (537)
.|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|+
T Consensus 12 ~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 46666666665544322 2222 2334455666666666666654433 12345556666666666666677777
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 315 ALRDEMMASGLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 315 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
+.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7776666654333 344555555666666777777766665 235566666666777777777777777776665
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 394 GVLPDVST---YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 394 ~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|+++++.. +.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~ 232 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD----SG 232 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC
Confidence 3 22211 1122233334466777777777777653 5566667777777777777777777777776533 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHh
Q 047648 471 NIVTYNVLIKGFCQKGKLED-ANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 509 (537)
+..++..++..+...|+.++ +.++++++++ +.|+...
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 56667777777777777654 4566777766 4455443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.9e-16 Score=144.74 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=125.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 241 (537)
...|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+.. .++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~---~~~~~ 82 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLAS---HSRRD 82 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHC---STTHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcC---CCcHH
Confidence 344555555554444332211111123333445555555555555444321 12344444445555555 45555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555444322 333344444555555555555555554 234455555555555666666666666655
Q ss_pred HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 321 MASGLKPNVVTS---NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 321 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++++..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 5542 322111 1122333334566666666666655532 25556666666666666666666666666655433
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 047648 398 DVSTYNCLIAGLSREGNVEG-VRNIMNELVNN 428 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 428 (537)
++.++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55566666666666666544 45566666554
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=5.9e-17 Score=151.26 Aligned_cols=380 Identities=11% Similarity=0.052 Sum_probs=172.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCC
Q 047648 33 ILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSL 112 (537)
Q Consensus 33 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 112 (537)
+.+|+..-++.+.|..|++.. +.+.+|..++.++.+.|++++|...+..
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------------------------ 57 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------------------------ 57 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------------------------
Confidence 456666667788899888877 2235899999999999999999887632
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
.+++..|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 245567888899999999999999988877764 4567788899999999999999988884 3677899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+..|...|++++|..+|..+ ..|..+..++.+ .|++++|.+.++++ .++.+|..++.+|...
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~---Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH---LGEYQAAVDGARKA------NSTRTWKEVCFACVDG 190 (449)
T ss_dssp --------CTTTHHHHHHHT---------TCHHHHHHHHHT---TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH---hccHHHHHHHHHHc------CCchhHHHHHHHHHHc
Confidence 99999999999999999976 479999999999 99999999999987 2789999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKK--KLVEKARV 350 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~ 350 (537)
|+++.|......+ ...+.-...++..|.+.|++++|+.+++...... +.....|+.+.-+|++- ++..+..+
T Consensus 191 ~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~ 264 (449)
T 1b89_A 191 KEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 264 (449)
T ss_dssp TCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999996655442 2344445578899999999999999999988765 55667777777777764 34444444
Q ss_pred HHHHHHHcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 351 LFDDISEQGLSP------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 351 ~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
.|..- .+++| +...|..++-.|...++++.|.. .|.++. |+..--..+.....+..+.+--.+...-
T Consensus 265 ~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~f 337 (449)
T 1b89_A 265 LFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQF 337 (449)
T ss_dssp HHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHH
Confidence 44321 12222 46678889999999999998886 444441 1222222333333455554444333333
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH-------------HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 425 LVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE-------------MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
.++. .| ...+.|+.++...=|..++.++|++ +.. ..+..+-.++-..|....+++.-
T Consensus 338 yl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~------~n~~~vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 338 YLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN------HNNKSVNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT------TCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhhhHHHH
Confidence 3322 22 2345555555444455555555443 321 12333444555566666666554
Q ss_pred HH
Q 047648 492 NG 493 (537)
Q Consensus 492 ~~ 493 (537)
..
T Consensus 408 r~ 409 (449)
T 1b89_A 408 RT 409 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=1.1e-14 Score=151.59 Aligned_cols=355 Identities=11% Similarity=0.124 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCC--CCChhhHHHHHH---------------------------HHHhCC
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGL--KSSVLSCNQLLR---------------------------ALVKEG 165 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~~~~~ 165 (537)
++.--...+++|...|.+.+|++++++..-.+- ..+....+.++. .+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 334445566777777777777777777763211 122334444443 444455
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHH
Q 047648 166 KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADA 245 (537)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~ 245 (537)
.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++.. .|++++|++
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~---~G~~kEAId 1126 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ---KGMVKEAID 1126 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh---CCCHHHHHH
Confidence 55555555555320 1111222221 445556665555543 135566666666666 666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 047648 246 VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL 325 (537)
Q Consensus 246 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 325 (537)
.|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+ .+
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 66442 255566666666666677777776666655543 2222233466666666666643222 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
.++...+..+...|...|++++|..+|... ..|..++.+|.+.|++++|.+.+++.. +..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHH
Confidence 234455556666677777777777777664 256667777777777777777766652 45666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.++ +-....|+-+...|.+.
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----hhHhHHHHHHHHHHHhC
Confidence 6777777777666665543 23355566788888888888888888888887543 23555666666666653
Q ss_pred --CCHHHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHhcCCcCCcc
Q 047648 486 --GKLEDANGLLNELLEKGLIP------NQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 486 --g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
++..++.+.|..-.. +.| +...|..++-.|.+.|.++.|.
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 345555555543322 333 4567888888888888888775
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-15 Score=136.49 Aligned_cols=226 Identities=10% Similarity=0.039 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPN----VVTS 332 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 332 (537)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|++.+.++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777777888888888888888877765 5777788888888888888888888888776421 111 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE 412 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 412 (537)
..+...+...|++++|...|+++.+.. |+ ...+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 888888888888888888888887753 33 23466677888899988888876433 566788888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++++.. +.+...|..+..++...|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999888865 5567888889999999999999999999988643 346788888899999999999999
Q ss_pred HHHHHHHHc
Q 047648 493 GLLNELLEK 501 (537)
Q Consensus 493 ~~~~~~~~~ 501 (537)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988873
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=167.36 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGD---YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 47899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 047648 193 LNGLCKAGKL-NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN------EVTFNTL 265 (537)
Q Consensus 193 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l 265 (537)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++.++++ ..++.|+ ..+...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-------~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-------ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-------HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-------HHHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999985 7899999999999999999999998876655 2455555555 3345444 4555667
Q ss_pred HHHHhccC
Q 047648 266 IDGFCKDE 273 (537)
Q Consensus 266 ~~~~~~~g 273 (537)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=2.2e-15 Score=131.55 Aligned_cols=197 Identities=14% Similarity=0.011 Sum_probs=101.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34444445555555555555555555554432 233444555555555555555555555555544322 3444455555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 373 AYCKE-----------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 373 ~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
++... |++++|...+++.++..+. +...+..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666666666666655433 45556666666666666666666666666654 4555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.+|...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA----PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666665432 234555666666666666666666666554
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=1.2e-14 Score=132.09 Aligned_cols=246 Identities=11% Similarity=0.028 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN--VVTSNALIN 337 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~ 337 (537)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++.+.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566777888899999999999888764 23556788888889999999999999999887431121 334788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|++++|...|++..+..+. +..++..+..+|...|++++|...+++..+..+. +...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887544 6678889999999999999999999999887544 67778777734445569999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCC----CHHHHHHHHHHHHhcCCHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWP----NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 490 (537)
|...|+++.+.. +.+...+..+..++...|+ +++|...++++++.......+ -..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999874 4457788888888888888 888999999998754332111 13678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHH
Q 047648 491 ANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~ 511 (537)
|...++++++ +.|+.....
T Consensus 240 A~~~~~~al~--~~p~~~~a~ 258 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHh--cCccHHHHH
Confidence 9999999998 457654433
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=165.44 Aligned_cols=151 Identities=14% Similarity=0.207 Sum_probs=112.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKR---RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (537)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------hhhHHH
Q 047648 227 LIDGYCKKGGIGK-MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG------VVTYNS 299 (537)
Q Consensus 227 ll~~~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ 299 (537)
+|.++++ .|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..+..|+ ..+...
T Consensus 206 LI~glcK---~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGR---QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHH---HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 8888888 676 467888888888888888888888887655443 333333333 2233333 344445
Q ss_pred HHHHHHhCC
Q 047648 300 LINGLCVDG 308 (537)
Q Consensus 300 l~~~~~~~~ 308 (537)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555554
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.1e-14 Score=131.09 Aligned_cols=213 Identities=12% Similarity=0.055 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--CC----hhhHHHHHHHHHhCCCH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--AG----VVTYNSLINGLCVDGKL 310 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~ 310 (537)
.|++++|+..+++..+.. .+..++..+...+...|++++|...++++.+.... ++ ...+..+...+...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 444444444444444433 34444444444444444444444444444332100 01 34555555566666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 311 DEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
++|+..++++.... |+. ..+...|++++|...++.+....+. +...+..+...+...|++++|...++++
T Consensus 96 ~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 96 KKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666665532 332 2344556677777777776665322 4556667777777788888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 391 LDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 391 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++++.
T Consensus 166 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 766544 67777778888888888888888888887764 455677788888888888888888888887764
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=5.6e-15 Score=129.01 Aligned_cols=199 Identities=14% Similarity=0.007 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047648 256 LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNAL 335 (537)
Q Consensus 256 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (537)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466677778888888888888888888887764 3367777788888888888888888888888764 4456777788
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 336 INGFCKK-----------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 336 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..++... |++++|...+++..+..+. +...+..+..++...|++++|+..+++.++.. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 8999999999988887544 67788888889999999999999999988877 58888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
+..++...|++++|+..|++..+.. |.+...+..+..++...|++++|++.|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999988864 556788888889999999999999888876
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=2e-14 Score=140.21 Aligned_cols=346 Identities=11% Similarity=0.023 Sum_probs=206.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666777888888888888887765 334445556666667776 7888888777654 44555566664545
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 199 AG-----KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 199 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
.| ++++|...|++..+.| +...+..+...|...+....-.++.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 6778888888887765 23356666666665222122234555555555544 3445566666666666
Q ss_pred CHH----HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 047648 274 NIS----AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG---KLDEAVALRDEMMASGLKPNVVTSNALINGFCKK---- 342 (537)
Q Consensus 274 ~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 342 (537)
.++ .+..+++..... ++..+..+...|...| ++++|++.|++..+.| +++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 443 344444443332 3347777777777788 7888888888887776 45555555666666554
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----C
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDA-Y--CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-----N 414 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~ 414 (537)
+++++|...|++.. .| ++..+..+... + ...+++++|...|++..+.| ++..+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 67888888888876 32 45566666665 3 45778888888888888765 5666677777666 44 7
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh----cC
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----KG 486 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 486 (537)
+++|...|++.. . .+...+..|...|.. ..++++|...|+++.+ . -+......|...|.. ..
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---~---g~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---N---GQNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---T---TCTTHHHHHHHHHHSCTTBCC
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---h---ChHHHHHHHHHHHHhCCCCCC
Confidence 888888888776 3 355666777766665 3478888888888764 1 133445566666653 45
Q ss_pred CHHHHHHHHHHHHHcCC
Q 047648 487 KLEDANGLLNELLEKGL 503 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~ 503 (537)
++++|...|+...+.|.
T Consensus 373 d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 77888888888777663
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=5.7e-14 Score=125.91 Aligned_cols=211 Identities=13% Similarity=0.014 Sum_probs=155.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3455666667777777777777777776653 345667777777777778888888877777766433 56677777888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732233 45677777888888888888888888887764 4457778888888888888888
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
|...++++++.. +.+...+..+...+...|++++|.+.++++.+. .|+...+..+
T Consensus 194 A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 888888887522 456777888888888888888888888888884 4665554443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=4.4e-13 Score=121.70 Aligned_cols=224 Identities=11% Similarity=-0.024 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSN 333 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 333 (537)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777788888888888888887773 355677777778888 888888888888888764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 334 ALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK----EGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 334 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888887764 66777888888888 888888888888888865 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 406 IAGLSR----EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 406 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|+++.+. .+...+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~ 223 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFN 223 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC------CCHHHHHH
Confidence 778877 888899999988888764 45677788888888 88999999999888762 23667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047648 478 LIKGFCQ----KGKLEDANGLLNELLEKG 502 (537)
Q Consensus 478 l~~~~~~----~g~~~~A~~~~~~~~~~g 502 (537)
+...|.. .+++++|.+.+++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888 889999999999988865
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=2.3e-14 Score=139.75 Aligned_cols=375 Identities=13% Similarity=0.045 Sum_probs=247.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCc---hHHHHHHHHHhh
Q 047648 68 RLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKP---HLGFEAFKRAGD 144 (537)
Q Consensus 68 ~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 144 (537)
.+...+.+.|++++|..+++...+.|+. ..+..+...|...|++ ++|++.|++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~---------------------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~ 66 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYS---------------------EAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------TGGGTCC------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCH---------------------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHh
Confidence 3667777888999999999888776532 2223355556667777 999999999986
Q ss_pred CCCCCChhhHHHHHHHHHhCC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCC
Q 047648 145 YGLKSSVLSCNQLLRALVKEG-----KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN---KASDIMEDMKSLG 216 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~ 216 (537)
. +...+..+...+...+ ++++|...|++..+.|.. ..+..+...|...+..+ ++.+.+......|
T Consensus 67 ~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 67 T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 3 6667777777666665 778999999999987643 26677777777766544 4555555555544
Q ss_pred CCCChhhHHHHHHHHhcCCCCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCC
Q 047648 217 VSPKVVTYNILIDGYCKKGGIG----KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE---NISAAMKVFEEMGSHG 289 (537)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 289 (537)
+...+..+...|.. .+ ..+++..+++..... +...+..+...|.+.| +.++|+..|++..+.|
T Consensus 140 ---~~~a~~~Lg~~y~~---~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 140 ---YPEAGLAQVLLYRT---QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp ---CTTHHHHHHHHHHH---HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHc---CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 45566667777766 44 344444444443332 3448888888999999 9999999999999886
Q ss_pred CCCChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCC
Q 047648 290 IAAGVVTYNSLINGLCVD----GKLDEAVALRDEMMASGLKPNVVTSNALING-F--CKKKLVEKARVLFDDISEQGLSP 362 (537)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~ 362 (537)
. ++...+..+...|... +++++|++.|++.. . .+...+..+... + ...+++++|...|++..+.|
T Consensus 210 ~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 210 T-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp C-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred C-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 3 3555556677777554 79999999999988 3 355666666666 4 46899999999999998876
Q ss_pred CHhHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 047648 363 SVITYNTLIDAYCKEG-----RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
+...+..+...|. .| ++++|...|++.. .| ++..+..+...|.. ..+.++|...|++..+.| +
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~ 353 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---Q 353 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---h
Confidence 6777788888887 55 9999999999988 33 67778888877776 459999999999999876 3
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 434 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
......|..+|.. ..++++|..+|+.+.+ .| .++.......+......++..+|..+.++..+
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~---~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA---QD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT---TC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4556677777764 5689999999999975 22 22332222222222334456677777776654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=1.2e-13 Score=121.29 Aligned_cols=213 Identities=13% Similarity=-0.018 Sum_probs=157.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34556666777777777777777777776653 345667777777777778888888888777765433 5667777888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 373 AYCKE-GRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 373 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887732222 35677788888888888888888888888764 44577888888888889999
Q ss_pred HHHHHHHHHHHHchhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKKW-PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
++|.+.++++++.. + .+...+..+...+...|+.++|..+++.+.+ ..|+......++
T Consensus 164 ~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRV----EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHh
Confidence 99999998887643 3 4666777777888888999999988888877 346665554443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.8e-15 Score=133.83 Aligned_cols=246 Identities=10% Similarity=-0.071 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGI---AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKAR 349 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 349 (537)
|++++|+..|+++.+... +.+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 444555555554444311 0123344444455555555555555555554432 223445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..|+++.+..+. +...+..+..+|...|++++|...++++.+..+ +.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555544222 344555555555555555555555555554322 22222222233344455556666555554432
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
+++...+ .++..+...++.++|.+.++++++..+...+.+..+|..+..+|...|++++|...++++++ ..|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--
Confidence 2222222 24444555555555665555554321110001135555666666666666666666666665 23422
Q ss_pred HHHHHHHHHhcCCcCCccC
Q 047648 510 YQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~ 528 (537)
+.....++...|++++|..
T Consensus 249 ~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 1122334444455555443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=7.1e-14 Score=126.85 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=137.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG--VVTYNSLING 303 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 303 (537)
.....+.. .|++++|+..+++..+.... +...+..+...+...|++++|+..++++.+....++ ...|..+...
T Consensus 8 ~~a~~~~~---~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 8 RYADFLFK---NNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHT---TTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHH---hcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33444444 55555555555555544221 333555555555556666666666665555221111 1225555666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 234456666666666666666666666666554322 455555555233333477777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------hHHHHHHHHHHHhcCChHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNG-MRAG------LVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 453 (537)
...++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665433 45566666666666666 666777766666541 1122 24666777777778888888
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
.+.|++++++. +.+...+..+...
T Consensus 241 ~~~~~~al~~~----p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 241 DAAWKNILALD----PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHC--
T ss_pred HHHHHHHHhcC----ccHHHHHHHhhhh
Confidence 88888877643 2344454444433
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=6.8e-14 Score=132.21 Aligned_cols=249 Identities=14% Similarity=0.050 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK-LDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
...|..+...+.+.|++++|+..|++++... +-+...|..+..++...|+ +++|+..|++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777778888888999999998888754 2367778888888888886 999999999888864 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR-EGNVE 416 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~ 416 (537)
++...|++++|+..|+++.+..+. +...|..+..++.+.|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888899999999999998887655 7788888888999999999999999999887666 78888888888888 55557
Q ss_pred HH-----HHHHHHHHHCCCCCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC---
Q 047648 417 GV-----RNIMNELVNNGMRAGLVTYNILVGALCKDG--KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG--- 486 (537)
Q Consensus 417 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 486 (537)
+| +..+++.++.. +-+...|..+..++...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHHhccc
Confidence 77 47888888764 456778888888888888 688888888776 32 2456788888888888864
Q ss_pred ------CHHHHHHHHHHH-HHcCCCCCHH-hHHHHHHHHHh
Q 047648 487 ------KLEDANGLLNEL-LEKGLIPNQT-TYQIVREEMME 519 (537)
Q Consensus 487 ------~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~~~~ 519 (537)
..++|+++++++ .+ +.|... .|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999998 66 567654 45444444443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=3.5e-14 Score=126.48 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=120.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 3445555555566666666666666665532 334555666666666666666666666666555332 55566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776665433 56666677777777777777777777776653 44566777777777777777777
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.++++++.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776532 335667777777777778888888887777773
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=1e-11 Score=125.25 Aligned_cols=445 Identities=10% Similarity=0.053 Sum_probs=303.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHH
Q 047648 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLA 125 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (537)
....|+..+.. .|.+..+|..++..+.+.+.++.+..+++.++.. +|.....|...+..
T Consensus 51 ~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-------------------fP~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 51 VIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-------------------FPLMANIWCMRLSL 109 (679)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHH
Confidence 45555666665 6789999999999998888888888888877765 35666788888888
Q ss_pred HHHcCC---chHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhCCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHH
Q 047648 126 YVKNMK---PHLGFEAFKRAGDYGL-KSSVLSCNQLLRALVKEGKF--------EDVEYVYKEMKR-RRI-EL-NLDSFN 190 (537)
Q Consensus 126 ~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~ 190 (537)
-.+.|+ ++.+.++|++.+...+ +|++..|...+....+.++. +.+.++|+.... .|. .+ +...|.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 888888 9999999999998631 37888999888877666554 334577777554 455 44 456788
Q ss_pred HHHHHHH---------hcCChhHHHHHHHHHHhCCCCCChhhHHH---HHHHHhcCC-------CCCCHHHHHHHHHHHH
Q 047648 191 FVLNGLC---------KAGKLNKASDIMEDMKSLGVSPKVVTYNI---LIDGYCKKG-------GIGKMYKADAVFKDMV 251 (537)
Q Consensus 191 ~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~-------~~~~~~~a~~~~~~~~ 251 (537)
..+.... ..++++.+..+|++.+......-..+|.. +...+.... ....++.|...+.++.
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7776543 23457889999999886422212233322 222110000 0112333444444432
Q ss_pred H--CCC----C-----------C--C------HHHHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCChhhHHH
Q 047648 252 E--NGI----L-----------P--N------EVTFNTLIDGFCKDE-------NISAAMKVFEEMGSHGIAAGVVTYNS 299 (537)
Q Consensus 252 ~--~~~----~-----------p--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (537)
. .++ + | + ...|...+..--..+ ..+.+..+|+++... .+-....|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 2 111 1 1 0 134444444333322 134456778888765 3447788888
Q ss_pred HHHHHHhCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC-------
Q 047648 300 LINGLCVDGKLDEAV-ALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGL---------SP------- 362 (537)
Q Consensus 300 l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------- 362 (537)
.+..+...|+.++|. ++|++.... ++.+...+...+....+.|+++.|..+|+++.+... .|
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 888888899999997 999999875 355666778888889999999999999999876410 12
Q ss_pred -----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChHH
Q 047648 363 -----SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE-GNVEGVRNIMNELVNNGMRAGLVT 436 (537)
Q Consensus 363 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 436 (537)
...+|...+....+.|..+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+..++. ++.+...
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~ 506 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHH
Confidence 13367788888888999999999999998861112334444333333344 4589999999999987 4556777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREE 516 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (537)
+...++.....|+.+.|+.+|++++...+. .......|...+..-.+.|+.+.+.++.+++.+. .|+......+.+-
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~-~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISD-SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 788899889999999999999999752210 0124578888888888999999999999999994 4666555555544
Q ss_pred H
Q 047648 517 M 517 (537)
Q Consensus 517 ~ 517 (537)
|
T Consensus 584 y 584 (679)
T 4e6h_A 584 Y 584 (679)
T ss_dssp T
T ss_pred h
Confidence 4
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=9.7e-14 Score=131.14 Aligned_cols=250 Identities=9% Similarity=-0.005 Sum_probs=191.3
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-FEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
.+..+|..+...+...|++++|++.|+++++.+ +.+..+|+.+..++...|+ +++|+..|++.++.... +...|+.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 345788889999999999999999999999875 4477889999999999997 99999999999987654 78899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK- 271 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 271 (537)
..++...|++++|+..|+++++... -+...|..+..++.. .|++++|+..++++++.... +...|+.+..++.+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~---~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQE---FKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 9999999999999999999998753 367788888888888 88899999999999887543 77888888888888
Q ss_pred cCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 047648 272 DENISAA-----MKVFEEMGSHGIAAGVVTYNSLINGLCVDG--KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK- 343 (537)
Q Consensus 272 ~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~- 343 (537)
.|..++| +..|++..... +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhc
Confidence 5655666 47777776653 225667777777777777 577888888776 32 2445667777777777753
Q ss_pred --------CHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHH
Q 047648 344 --------LVEKARVLFDDI-SEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 344 --------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 374 (537)
..++|..+++++ .+.++. ....|..+...+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 247777777777 454221 334455444443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=6.1e-14 Score=124.89 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45566777778888888888888888887753 3367778888888888888888888888888764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999888876543 6777888888888999999999999988876543 67788888888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++++..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999888764 4567788889999999999999999999988643
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=4.6e-13 Score=119.95 Aligned_cols=201 Identities=13% Similarity=-0.012 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777788888888888888888887653 3366778888888888888888888888888764 3467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888899999999888887732233 4567778888888899999999999988876544 67788888888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999888764 456777888888889999999999999988763
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=3.3e-12 Score=115.87 Aligned_cols=222 Identities=11% Similarity=-0.025 Sum_probs=169.5
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChh
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK----DENISAAMKVFEEMGSHGIAAGVV 295 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 295 (537)
+..++..+...+.. .+++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYK---EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 44556666666666 67777777777777763 245666777777777 788888888888877764 667
Q ss_pred hHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 296 TYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK----KKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 296 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 77777777877 888888888888887764 66777777788887 888888888888887764 55667
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 368 NTLIDAYCK----EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 368 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777777777 788888888888888764 56677778888888 888888888888888764 2567777
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHH
Q 047648 440 LVGALCK----DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 440 l~~~~~~----~g~~~~A~~~~~~~~~ 462 (537)
+..+|.. .+++++|.+.|+++.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 8888888 8888888888888876
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=6.7e-14 Score=127.18 Aligned_cols=246 Identities=8% Similarity=-0.111 Sum_probs=170.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHH
Q 047648 237 IGKMYKADAVFKDMVENGIL---PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 313 (537)
.+++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 57788888888888765321 135667777888888888888888888877653 33577788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
++.++++.+.. +.+...+..+..++...|++++|...++++.+..+ +.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888887753 34567788888888888888888888888877533 3333333444456668888888888777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR---AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
... +...+ .++..+...++.++|...+++..+.... .+...+..+..+|...|++++|...|+++++.. |
T Consensus 174 ~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p 246 (275)
T 1xnf_A 174 SDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----V 246 (275)
T ss_dssp SCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred CCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----c
Confidence 332 33333 3666667777888888888877654211 115677888888999999999999999887532 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLL 495 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (537)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 233355677778888887766
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=8.8e-13 Score=115.69 Aligned_cols=205 Identities=11% Similarity=-0.032 Sum_probs=143.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
+.++..+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 4556777888888888888888888888888764 44567788888888888888888888888777643 366777777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047648 193 LNGLCKA-GKLNKASDIMEDMKSLGVSPK-VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 193 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 270 (537)
...+... |++++|.+.++++.+.+..|+ ...+..+...+.. .|++++|...++++.+... .+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK---QGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 8888888 888888888888776322232 4556666677777 6777777777777766432 24566666777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (537)
+.|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777665432134555666666666677777777777666543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=5.2e-13 Score=113.23 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
++.+|..+...+...|++++|...|++..+..+. +...+..+..+|.+.|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5667788888888888888888888888777544 6777888888888888888888888888776554 6777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
.+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----chhhhHHHHHHHHHHHCCC
Confidence 8888888888888888888764 5567788888888888999999999998888644 3467788888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH
Q 047648 488 LEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+++|++.|++.++ +.|+..
T Consensus 157 ~~~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHHHh--CCccCH
Confidence 9999999998888 556553
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.4e-13 Score=132.69 Aligned_cols=306 Identities=15% Similarity=0.064 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCC
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK----VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GIL 256 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~ 256 (537)
....+......+...|++++|...|++..+.+.. + ...+..+...+.. .|++++|...+++.... +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcccc
Confidence 4445555666666666666666666666665311 2 2345555555655 56666666666654321 111
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 257 P-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 257 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
| ...++..+...+...|++++|...+++....... ++. .....++..
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~ 132 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHH
Confidence 1 1234444555555555555555555554331000 000 000223444
Q ss_pred HHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 335 LINGFCKKKL--------------------VEKARVLFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 335 ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
+...+...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 55555554443321 1001 123455566666666777777666666
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 390 MLDRGV-LPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 390 ~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
..+... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 553210 011 2356666667777777777777777665431 001 144666777777777777777777777
Q ss_pred HHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCcCC
Q 047648 460 MFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEK----GLIP-NQTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 460 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~ 525 (537)
+++.......+ ...++..+..+|...|++++|...+++.++. +..+ ...++..+...+...|....
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 76643321111 1456667777777778888887777776652 2111 13455566666767666543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1e-13 Score=133.72 Aligned_cols=307 Identities=14% Similarity=0.017 Sum_probs=199.6
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C--CC
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN----LDSFNFVLNGLCKAGKLNKASDIMEDMKSLG--V--SP 219 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~~ 219 (537)
......+......+...|++++|...|++..+.... + ..++..+...+...|++++|...+++..+.. . .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667778888999999999999999999887433 3 3578889999999999999999999998752 1 11
Q ss_pred -ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCC-------------------
Q 047648 220 -KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL-PN----EVTFNTLIDGFCKDEN------------------- 274 (537)
Q Consensus 220 -~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~------------------- 274 (537)
...++..+...+.. .|++++|...+++....... ++ ..++..+...+...|+
T Consensus 85 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 85 GEAKASGNLGNTLKV---LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 24467778888888 89999999999987753100 11 3356667777777777
Q ss_pred -HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 275 -ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL-KPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 275 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
+++|...+++.... +.. .+. +....++..+...+...|++++|...+
T Consensus 162 ~~~~A~~~~~~al~~----------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 162 ALQAAVDFYEENLSL----------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHHHH----------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666665554321 000 000 001234444555555555555555555
Q ss_pred HHHHHcCC-CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 353 DDISEQGL-SPS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 353 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++..+... .++ ..++..+..+|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 55443200 001 235666677777777777777777766542110 01 446677777888888888888888
Q ss_pred HHHHHCC----CC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHHHHHHHHHHHHhcCCHH
Q 047648 423 NELVNNG----MR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 423 ~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 489 (537)
++..+.. .. ....++..+..+|...|++++|.+.+++++++...... ....++..+...+...|+..
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7776531 01 11456778888888899999999999888775433211 13456667777777777653
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=2.1e-13 Score=131.94 Aligned_cols=280 Identities=14% Similarity=0.060 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CC-CC
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GI-LP 257 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~p 257 (537)
..+..+...+...|++++|...|++..+.+.. +. ..+..+...+.. .|++++|+..+++.... +. +.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY---LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34445555666667777777777766665311 21 245555555555 56666666666655432 10 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG-LKPNVVTSNALI 336 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll 336 (537)
...++..+...|...|++++|...+++..... ...+ .+....++..+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHH
Confidence 22344444455555555555555555443210 0000 011123444455
Q ss_pred HHHHhcCC-----------------HHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 337 NGFCKKKL-----------------VEKARVLFDDISEQ----GL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 337 ~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
..+...|+ +++|...+.+..+. +. ......+..+...|...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 55555555 55555555544321 11 1123356667777777777777777777766431
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 395 VL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-----AGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 395 ~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.. ++ ..++..+...+...|++++|...+++..+.... ....++..+...|...|++++|.+.++++++..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 10 11 236677777888888888888888877654110 114667788888889999999999998887643
Q ss_pred hcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 465 KEKK--WPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 465 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.... .....++..+..+|...|++++|...+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3211 112457778888899999999999999998873
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=2.3e-10 Score=115.42 Aligned_cols=410 Identities=10% Similarity=-0.008 Sum_probs=283.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCCHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK---FEDVEYVYKEMKRRR-IELNLDS 188 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 188 (537)
|.+...|..++..+.+.+.++.+..+|+++... +|.+...|...+..-.+.+. ++.+..+|+...... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 678899999999999999999999999999987 57788899999999999999 999999999998874 1478889
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHhcCCC------CCCHHHHHHHHHHHH
Q 047648 189 FNFVLNGLCKAGKL--------NKASDIMEDMKS-LGV-SPK-VVTYNILIDGYCKKGG------IGKMYKADAVFKDMV 251 (537)
Q Consensus 189 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~~ 251 (537)
|...+....+.++. +.+.++|+.... .|. .++ ...|...+........ .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776666554 334577887664 465 554 4678877766543111 234567888888887
Q ss_pred HCCCCCCHHHHHH---HHHHHh----------ccCCHHHHHHHHHHHHh--CCC----C-----------C--C------
Q 047648 252 ENGILPNEVTFNT---LIDGFC----------KDENISAAMKVFEEMGS--HGI----A-----------A--G------ 293 (537)
Q Consensus 252 ~~~~~p~~~~~~~---l~~~~~----------~~g~~~~a~~~~~~~~~--~~~----~-----------~--~------ 293 (537)
......-..+|.. ...... ...+++.|...+.++.. .++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5311111233322 111110 11234445555555322 111 1 1 0
Q ss_pred hhhHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHh
Q 047648 294 VVTYNSLINGLCVDG-------KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKAR-VLFDDISEQGLSPSVI 365 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 365 (537)
...|...+.---..+ ..+.+..+|++++.. ++-....|...+..+...|+.++|. .+|++..... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 123444443322222 134566788888776 3557788888888888999999996 9999998763 34677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGV---------LP------------DVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
.|...+...-+.|+++.|.++|+++++... .| ...+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778888888899999999999999886410 13 134688888888889999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 425 LVNNGMRAGLVTYNILVGALCKD-GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
.++.-.......|...+..-.+. ++++.|.++|+..++. ++.+...|..++......|+.+.|..+|++.+....
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~----~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY----FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99861123344555444444454 4599999999999873 244677888899988899999999999999998543
Q ss_pred CC--CHHhHHHHHHHHHhcCCcCCccCC
Q 047648 504 IP--NQTTYQIVREEMMEKGFIPDIEGH 529 (537)
Q Consensus 504 ~p--~~~~~~~l~~~~~~~g~~~~a~~~ 529 (537)
.+ ....|...++--.+.|..+.+..+
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 235677777777778887665443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=9.7e-12 Score=114.89 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------hCCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 276 SAAMKVFEEMGSHGIAAGVVTYNSLINGLC-------VDGKL-------DEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 234555555555543 34664 6777777777763112344567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVI-TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS-REGNVEGVR 419 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~ 419 (537)
.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.++..+. +...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777764322 232 6777777777777777777777777765432 4444443333322 257788888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
.+|++.++.. +.+...|..++..+.+.|++++|+.+|+++++.. ..+| ....|..++..+.+.|+.++|..++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887777653 3456777777777777888888888888877521 1233 356777777777777888888888888
Q ss_pred HHHc
Q 047648 498 LLEK 501 (537)
Q Consensus 498 ~~~~ 501 (537)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1e-12 Score=122.91 Aligned_cols=279 Identities=15% Similarity=0.072 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCC-C
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK----VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GILP-N 258 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 258 (537)
.+......+...|++++|...|+++.+.... + ...+..+...+.. .|++++|...+++.... +..| .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3444455556666666666666666654211 1 2344455555555 55666666555554321 1011 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
..++..+...+...|++++|...+++..+... .++. .....++..+..
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 131 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 131 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHH
Confidence 23334444444444444444444444332100 0000 001224444555
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 338 GFCKKKL--------------------VEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 338 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
.+...|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555 55555555554321 111 1233566677777778888888888777664
Q ss_pred CCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 393 RGV-----LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 393 ~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
... .....++..+...+...|++++|...+++..+.. .++ ...++..+...+...|++++|...++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 310 1112367777788888888888888888776531 011 145777888899999999999999998876
Q ss_pred chhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 463 MEKEKKW--PNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 463 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+.... ....++..+...|...|++++|...+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4332111 12457778889999999999999999999873
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=4.3e-12 Score=107.51 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=108.1
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
++..|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666666543 334556666666666666666666666666555333 4555566666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
.+...++++.|...+.+..+..+. +...+..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666677777777777766665433 56666667777777777777777777776654 4456667777777777777777
Q ss_pred HHHHHHHHHH
Q 047648 453 AVSLLDEMFK 462 (537)
Q Consensus 453 A~~~~~~~~~ 462 (537)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2.9e-12 Score=122.52 Aligned_cols=231 Identities=9% Similarity=-0.026 Sum_probs=174.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSH----GIAA-GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--L----KPNVVTSN 333 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~ 333 (537)
....+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|+..+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999998763 1111 24678888899999999999999999887631 1 11235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLD-----RGVLPDVSTYN 403 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 403 (537)
.+...|...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999887653111 11 24678899999999999999999999887 33133467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNN----GMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.. ..+.....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-----~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-----LYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-----CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-----CHHHHHHHHH
Confidence 9999999999999999999988764 112223345778888889998 777777777652 1122345777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+...|...|++++|...+++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999999876
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=2.9e-13 Score=130.95 Aligned_cols=279 Identities=13% Similarity=0.043 Sum_probs=175.3
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---CCC
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL----DSFNFVLNGLCKAGKLNKASDIMEDMKSLG--V---SPK 220 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~~~ 220 (537)
....+..+...+...|++++|...|++..+.... +. ..+..+...|...|++++|.+.+++..+.. . ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445666778899999999999999999987433 33 478889999999999999999999998751 1 223
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHH
Q 047648 221 VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----G-ILPNEVTFNTLIDGFCKDEN-----------------ISAA 278 (537)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~-----------------~~~a 278 (537)
..++..+...|.. .|++++|...+++.... + .+....++..+...|...|+ +++|
T Consensus 126 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 126 AKSSGNLGNTLKV---MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 4567788888888 89999999999987653 1 11123456667777777777 6666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
...+++..+. ..... .......++..+...+...|++++|...+++..+.
T Consensus 203 ~~~~~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 203 VEFYQENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666554321 00000 00001123344444444444555444444444332
Q ss_pred CCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 359 GLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-----PDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 359 ~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
... ++ ...+..+..+|...|++++|...+++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 000 01 124555666666666666666666665542110 11345666677777777777777777766653
Q ss_pred C-----CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 429 G-----MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 429 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
. ......++..+..+|...|++++|.+.++++++
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 011134667777788888888888888888765
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.8e-12 Score=127.30 Aligned_cols=213 Identities=11% Similarity=-0.034 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL-DEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++...++...... +.+...+..+..++...|++ ++|++.|+++.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544432 23556666666677777777 77777777766653 3345667777777777777777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKE---------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--------GNVE 416 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~ 416 (537)
+..+.. |+...+..+..+|... |++++|...+++.++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 776653 4456667777777777 7778888888777776544 677777777777777 7788
Q ss_pred HHHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 417 GVRNIMNELVNNGMR---AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
+|...|++..+.. + .+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD----PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888753 3 467788888888888888888888888887644 3356677888888888888888877
Q ss_pred HHHH
Q 047648 494 LLNE 497 (537)
Q Consensus 494 ~~~~ 497 (537)
.+++
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=7.1e-12 Score=119.83 Aligned_cols=233 Identities=9% Similarity=-0.043 Sum_probs=162.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--C----CCChh
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVEN----GILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHG--I----AAGVV 295 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~ 295 (537)
....+.. .|++++|+..+++.... +-.+ ...++..+...|...|++++|...+++..+.. . +....
T Consensus 109 ~g~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 109 RGMYELD---QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHH---hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3344445 67777777777777653 1111 23567777778888888888888887765421 1 11234
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGL-KP----NVVTSNALINGFCKKKLVEKARVLFDDISEQ----GL-SPSVI 365 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 365 (537)
++..+..+|...|++++|++.+.+..+... .+ ...++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 677778888889999999988888765310 01 1246788888899999999999999888762 22 33456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRA-GLVTY 437 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~ 437 (537)
++..+..+|.+.|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..| ....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 7888899999999999999999887753 111122335667778888888 67777777665 2223 34577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
..+...|...|++++|.+.+++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999987543
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=9.9e-13 Score=123.06 Aligned_cols=279 Identities=14% Similarity=0.034 Sum_probs=180.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-CCh
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN----LDSFNFVLNGLCKAGKLNKASDIMEDMKSLG----VS-PKV 221 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~ 221 (537)
...+......+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++..+.. .. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344566677889999999999999999887433 3 3678889999999999999999999998752 11 124
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPN----EVTFNTLIDGFCKDEN--------------------IS 276 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~ 276 (537)
.++..+...+.. .|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 84 ~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 84 KASGNLGNTLKV---LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 567788888888 8999999999998765311 112 2366667777777777 66
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 277 AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
+|...+++.... ..... .......++..+...+...|++++|...+++..
T Consensus 161 ~A~~~~~~a~~~----------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 161 AAVDLYEENLSL----------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666554321 00000 000012234444445555555555555555443
Q ss_pred Hc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 357 EQ----GL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 357 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22 00 001225566666677777777777777666542100 01 4466677777788888888888887776
Q ss_pred HCC----C-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 427 NNG----M-RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 427 ~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.. . .....++..+...|...|++++|.+.+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 531 0 111346777888888888888888888888764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=5.1e-11 Score=110.03 Aligned_cols=219 Identities=10% Similarity=0.025 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFC-------KDENI-------SAAMKVFEEMGSHGIAAGVVTYNSLINGLCV 306 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (537)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665532 224555655555544 24664 7788888887763112345577777777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCChHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPN-VV-TSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC-KEGRMEDA 383 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 383 (537)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 343 33 6777778888888888888888888776432 3444443333322 36888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG-MRA--GLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+|++.++..+. +...|..++..+.+.|++++|..+|++.+... ++| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776444 67788888888888888888888888888862 344 3567788888888888888888888888
Q ss_pred HHch
Q 047648 461 FKME 464 (537)
Q Consensus 461 ~~~~ 464 (537)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7644
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.3e-12 Score=125.37 Aligned_cols=213 Identities=9% Similarity=-0.085 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENI-SAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444321 22555666666666666666 66666666665542 2245566666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------CChH
Q 047648 319 EMMASGLKPNVVTSNALINGFCKK---------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE--------GRME 381 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 381 (537)
++.+. .|+...+..+...+... |++++|...|++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 35556666666666666 7777777777777665433 566677777777766 7777
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVL--PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLD 458 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (537)
+|+..|++..+..+. -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777765431 266777777777777778888887777777764 4455667777777777777777766544
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4e-12 Score=117.63 Aligned_cols=239 Identities=15% Similarity=0.073 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSH-------GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------G 324 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 324 (537)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998762 22334667888889999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 047648 325 L-KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ------GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--- 393 (537)
Q Consensus 325 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 393 (537)
. +....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567888899999999999999999988764 2222 3456788889999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------hHHHHHHHHHHHhcCChHHHHH
Q 047648 394 ---GVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG-------MRAG-------LVTYNILVGALCKDGKSKKAVS 455 (537)
Q Consensus 394 ---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 455 (537)
+..| ...++..+...+...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34578888899999999999999999998631 1111 1222333344455566666777
Q ss_pred HHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 456 LLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.++..... .+.+..++..+..+|.+.|++++|.+.+++.++
T Consensus 266 ~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD----SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776531 133567889999999999999999999999887
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=4.5e-12 Score=117.28 Aligned_cols=241 Identities=17% Similarity=0.122 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN-------GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH---- 288 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 288 (537)
+..++..+...+.. .|++++|...++++.+. ..+....++..+...+...|++++|...++++...
T Consensus 26 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS---QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34567888888988 89999999999998873 22334567888999999999999999999998753
Q ss_pred --C-CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 289 --G-IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------GLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 289 --~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
+ .+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2234567888999999999999999999998864 2222 3467888899999999999999999998764
Q ss_pred ------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHH
Q 047648 359 ------GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG-------VLPD-------VSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 359 ------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~l~~~~~~~~~~~~ 417 (537)
+..| ...++..+..+|...|++++|...++++.+.. ..+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 34568889999999999999999999988631 1111 1122233333445566666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...+....... +....++..+..+|.+.|++++|.+.|++++++.
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777777766543 4456788999999999999999999999998754
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=4.7e-11 Score=113.84 Aligned_cols=232 Identities=9% Similarity=-0.053 Sum_probs=173.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---CC-CHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGI-AA----GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--L---KP-NVVT 331 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~-~~~~ 331 (537)
......+...|++++|...|++..+... .+ ...++..+...|...|+++.|+..+.+..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345566788999999999999876411 11 24567788889999999999999998877531 1 11 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD-----RGVLPDVST 401 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 401 (537)
+..+..+|...|++++|...|.+..+. +.. ....++..+..+|...|++++|...+++..+ ..+. ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 788889999999999999999887653 111 1234677888999999999999999999887 4433 3778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNG----MRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
+..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++.. ..+.....
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~~~~~~ 338 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----ChhHHHHH
Confidence 8899999999999999999999988752 12223456666777778888 777777777531 11223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..+...|...|++++|...+++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888999999999999999999876
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=4e-11 Score=105.39 Aligned_cols=208 Identities=14% Similarity=0.038 Sum_probs=159.5
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 047648 292 AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLI 371 (537)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (537)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888888999999999999999999998763377778888999999999999999999999887544 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHH
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDV-------STYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILVG 442 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 442 (537)
.+|...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|++.++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999886544 45 557888888899999999999999998864 33 4577788888
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+|...| ...++++..+. ..+...|.... ....+.+++|+..+++.++ +.|+......++.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA----SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 886554 34455554322 22344444333 3345778999999999999 5577655444443
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=3.5e-10 Score=107.65 Aligned_cols=270 Identities=11% Similarity=0.014 Sum_probs=141.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCC----HH
Q 047648 190 NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV----TYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPN----EV 260 (537)
Q Consensus 190 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~ 260 (537)
......+...|++++|...+++........+.. +++.+...+.. .|++++|...+++...... .++ ..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC---KGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455666777778877777776653222221 33444555555 6777777777766654210 011 12
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--CH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSH----GIA--A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK--P--NV 329 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~ 329 (537)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 2445556666677777777777665432 111 1 1234445556666677777777777666553211 1 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS-VITYN-----TLIDAYCKEGRMEDAFAMRNSMLDRGVLP---DVS 400 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~ 400 (537)
.++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3455555666666666666666666544311111 01111 12233556666666666666655432211 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAGL-VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..+...+...|++++|...+++.... +.+++. ..+..+..++...|+.++|...++++++
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555566666666666666655432 111111 2444455556666666666666666654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=4.3e-10 Score=107.02 Aligned_cols=270 Identities=10% Similarity=-0.008 Sum_probs=148.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hhHHH
Q 047648 156 QLLRALVKEGKFEDVEYVYKEMKRRRIELNLD----SFNFVLNGLCKAGKLNKASDIMEDMKSLGVS-PKV----VTYNI 226 (537)
Q Consensus 156 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 226 (537)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766543222221 3455556666677777777777776643111 111 12344
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--C--Chh
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVEN----GIL--P-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--A--GVV 295 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~ 295 (537)
+...+.. .|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...
T Consensus 99 la~~~~~---~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 99 QSEILFA---QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHH---CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5555666 67777777777666542 111 2 2334555666666777777777777766543211 1 123
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhH
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPN--VVTSN----ALINGFCKKKLVEKARVLFDDISEQGLSPS---VIT 366 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 366 (537)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455566666777777777777776654311111 11111 222335567777777777766654322111 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDV-STYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+..+...+...|++++|...+++.... +..++. .++..+..++...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666667777777777777666432 211122 24555566666777777777777766654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.38 E-value=3e-11 Score=123.33 Aligned_cols=165 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...++.+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555555555555555555555555554322 3445555555555555555555555555554333 45555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (537)
+...|++++|++.|++.++.. +-+...|..+..+|...|++++|++.|++++++. +-+...|..++.+|...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccH
Confidence 555555555555555555543 3334555555555666666666666666555432 22445555555566666666
Q ss_pred HHHHHHHHHHHH
Q 047648 489 EDANGLLNELLE 500 (537)
Q Consensus 489 ~~A~~~~~~~~~ 500 (537)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=7e-11 Score=99.83 Aligned_cols=164 Identities=14% Similarity=0.042 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34455555666666666666666665544322 4556666666666677777777777666655332 556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++++.. +.+..++..++..+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCHH
Confidence 77777777777777766653 4456666777777777777777777777776532 335667777777777777777
Q ss_pred HHHHHHHHHHH
Q 047648 490 DANGLLNELLE 500 (537)
Q Consensus 490 ~A~~~~~~~~~ 500 (537)
+|...++++.+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777766
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.7e-10 Score=109.90 Aligned_cols=223 Identities=9% Similarity=0.013 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----C-CC-CChhhHHHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGI-LP----NEVTFNTLIDGFCKDENISAAMKVFEEMGSH----G-IA-AGVVTYNSLINGLC 305 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~-~~~~~~~~l~~~~~ 305 (537)
.|++++|+..+++....-. .+ ...++..+...|...|+++.|...+++..+. + .. ....+++.+..+|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 6778888887777764310 01 2356677777888888888888888776542 1 01 12456777888888
Q ss_pred hCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhHHHHHHHHHH
Q 047648 306 VDGKLDEAVALRDEMMAS----GLK-PNVVTSNALINGFCKKKLVEKARVLFDDISE-----QGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 375 (537)
..|++++|.+.+.+..+. +.. ....++..+..+|...|++++|...+++..+ ..+. ...++..+..++.
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~ 272 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLC 272 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHH
Confidence 889999988888877653 111 1234677788888899999999999988876 3322 3667888889999
Q ss_pred hcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc
Q 047648 376 KEGRMEDAFAMRNSMLDRG----VLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRA-GLVTYNILVGALCKD 447 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 447 (537)
+.|++++|...+++..+.. .......+..+...+...++ +.+|..++++ .+..| ....+..+...|...
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHC
Confidence 9999999999999887642 11123355666666777777 6777777665 22222 245667888999999
Q ss_pred CChHHHHHHHHHHHHc
Q 047648 448 GKSKKAVSLLDEMFKM 463 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~ 463 (537)
|++++|.+.|+++++.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=9.3e-11 Score=99.05 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=97.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 234445555555555566666666666555554322 45555666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666655332 55666666666677777777777777666653 34556667777777777777777777
Q ss_pred HHHHHHch
Q 047648 457 LDEMFKME 464 (537)
Q Consensus 457 ~~~~~~~~ 464 (537)
++++++..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 77776543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.6e-10 Score=101.49 Aligned_cols=196 Identities=13% Similarity=0.001 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI 336 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 336 (537)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688889999999999999999999999887543677888889999999999999999999999864 34667899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSV-------ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---VSTYNCLI 406 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 406 (537)
.++...|++++|...+++..+..+. +. ..|..+...+...|++++|...++++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999887543 44 45788888899999999999999999986 344 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.++... +..+++++...+ ..+...|.... ....+.+++|+..|++++++.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 777544 444556666553 33444444433 344567899999999998754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=8.3e-11 Score=120.12 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
..+|+.+...+.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|...|++..+..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666666666666666666542 234556666666666666666666666666665433 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
|.+.|++++|++.|++.++..+. +...|..+..++...|++++|+..|++.++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666665443 56666666666777777777777777666653 33456666667777777777777
Q ss_pred HHHHHHHHH
Q 047648 454 VSLLDEMFK 462 (537)
Q Consensus 454 ~~~~~~~~~ 462 (537)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666655
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=7.2e-11 Score=107.32 Aligned_cols=230 Identities=17% Similarity=0.077 Sum_probs=156.8
Q ss_pred hccCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 047648 270 CKDENISAAMKVFEEMGS-------HGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------GL-KPNVVTSNAL 335 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 335 (537)
...|++++|+.+|++..+ ...+....++..+...+...|++++|+..+.++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777766544 222334667888899999999999999999998764 22 2235678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQ-----GL--SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR------GVLP-DVST 401 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 401 (537)
...+...|++++|...+.+..+. +. +.....+..+..+|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 223567888889999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHch---hcCCCC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNN-------GMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKME---KEKKWP 470 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 470 (537)
+..+...+...|++++|..++++..+. ... .....+..+...+...+....+..+ ..+.... ....+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 888889999999999999999988864 112 2233444444444443333322222 2221110 011122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...++..+..+|...|++++|...+++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999876
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=4.2e-10 Score=102.89 Aligned_cols=204 Identities=10% Similarity=-0.079 Sum_probs=130.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMAS----GLKPN-VVTSNALINGFCKKKLVEKARVLFDDISEQGL---SP--SVITYNTLID 372 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 372 (537)
.|...|++++|.+.|.+.... |.+++ ..+|+.+..+|...|++++|...+++..+... .+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667666666665442 21111 34666677777777777777777766654311 01 1346777888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HHHHHH
Q 047648 373 AYCKE-GRMEDAFAMRNSMLDRGVLP-D----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL------VTYNIL 440 (537)
Q Consensus 373 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 440 (537)
+|... |++++|+..+++.++..... + ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 89999988888877642110 1 346778888889999999999999998886422221 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFC--QKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
..++...|++++|+..|++++++.+..... ....+..++.++. ..+++++|+..|+++.. +.|+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 888889999999999999887644321111 1123445566664 35678888888877755 445443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.1e-10 Score=106.23 Aligned_cols=225 Identities=17% Similarity=0.082 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------C-CCCChhhHHHHHH
Q 047648 237 IGKMYKADAVFKDMVE-------NGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH------G-IAAGVVTYNSLIN 302 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~ 302 (537)
.|++++|+..+++..+ ...+....++..+...+...|++++|...++++... + .+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 5666666666666554 222334677888999999999999999999998753 1 1234567888999
Q ss_pred HHHhCCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMAS------G-LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ------GLSP-SVITYN 368 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~ 368 (537)
.+...|++++|.+.+.++... . .+....++..+...+...|++++|...+++..+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998764 1 1234577888999999999999999999998764 1122 356788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCh
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR-------GVLPD-VSTYNCLIAGLSREGNVE------GVRNIMNELVNNGMRAGL 434 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 434 (537)
.+..+|...|++++|...++++.+. ...+. ...+..+...+...+... .+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8999999999999999999998763 11222 223333333333333322 22222222111 112335
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.++..+...|...|++++|.+.|+++++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999875
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.3e-09 Score=97.91 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=131.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHhHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQGLS-P-SVITY 367 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 367 (537)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|++..+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555566666777777777777777776643 122 455666666777777777777777776665321 1 13345
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 368 NTLIDAYCK--------EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 368 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
..+..++.. .|++++|...|+++++..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 66677777777766654322 1111111110 0000000 0112456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH--
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK----------GKLEDANGLLNELLEKGLIPNQ-- 507 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~-- 507 (537)
+...|.+.|++++|+..|+++++..+. .......+..+..+|... |++++|...++++++. .|+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 788899999999999999999864322 111356777888888866 8899999999999984 4654
Q ss_pred --HhHHHHHHHHHhcCCcCCccCCCC
Q 047648 508 --TTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 508 --~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
.....+...+.+.|.++++....+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~~ 256 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLAQ 256 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 345555666667777666655443
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3.6e-08 Score=96.56 Aligned_cols=374 Identities=9% Similarity=-0.068 Sum_probs=229.7
Q ss_pred CCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCCh
Q 047648 130 MKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-FEDVEYVYKEMKRR-RI-ELNLDSFNFVLNGLC----KAGKL 202 (537)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 202 (537)
|+++.+.++|++.+.. .|++..|...+....+.+. .+....+|+..... |. ..+...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7889999999998874 4688888888887777663 45677778776653 43 236677777776643 34677
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC----------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 203 NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG----------GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+.+.++|++.+......-...|......-...+ ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 888899998887421111122222211110000 0112223333333333210001333555555543222
Q ss_pred C-------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 273 E-------NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 273 g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
+ ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..++++.... +.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 134567889888775 3446778888888888999999999999999987 33333322 22222121
Q ss_pred HHHHHHHHHHHHcC------------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-c
Q 047648 346 EKARVLFDDISEQG------------LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR-E 412 (537)
Q Consensus 346 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~ 412 (537)
++. ++.+.+.- .......|...+....+.+..+.|..+|++. .. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222210 0112245666777777788899999999999 32 22345555433322222 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
++.+.|..+|+...+.. +.++..+...++...+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--------k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--------KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--------CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCHHHHH
Confidence 36999999999998863 3345566777888889999999999999872 36788888888878889999999
Q ss_pred HHHHHHHHc--C---CCCC------------HHhHHHHHHHHHhcCCcCCc
Q 047648 493 GLLNELLEK--G---LIPN------------QTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 493 ~~~~~~~~~--g---~~p~------------~~~~~~l~~~~~~~g~~~~a 526 (537)
.+++++.+. + -.|- ..++..++..|.-....+..
T Consensus 405 ~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 405 ELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred HHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 999988752 1 1111 25677788887665555544
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.9e-09 Score=85.37 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.|..+...+...|++++|..+++++.+..+. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4556677777777777777777777765433 56677777777777788888888888777654 445667777788888
Q ss_pred hcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888877532 335677777888888888888888888888763
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.16 E-value=1.8e-09 Score=93.10 Aligned_cols=188 Identities=11% Similarity=0.022 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNV-VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
+......+...|++++|+..|++..+. .|+. ..+.. ...... ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHHH
Confidence 334445566777777777777777664 2322 22211 000000 0001222334777888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--hHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK--SKKA 453 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 453 (537)
+.|++++|...+++.++..+. +...+..+..++...|++++|...|++.++.. |.+..++..+..+|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888888888888887655 77888888888888888888888888888875 4567788888887766554 3445
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
...++.+.. ..|....+.....++...|++++|+..|++.++ +.|+......+.
T Consensus 144 ~~~~~~~~~-----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLSS-----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC---C-----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHhC-----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 555655531 122333444556667778889999999999887 667766554443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=4e-09 Score=96.32 Aligned_cols=206 Identities=11% Similarity=0.008 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCCHHHH
Q 047648 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH----GIAA-GVVTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 313 (537)
++++|...+.+. ...|...|++++|...|.+.... |-++ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466676666654 23455677777777777766442 2111 145677777788888888888
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHhcCChHH
Q 047648 314 VALRDEMMASGL---KP--NVVTSNALINGFCKK-KLVEKARVLFDDISEQGLSP-S----VITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 314 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 382 (537)
+..+++..+... .+ -..++..+...|... |++++|...|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888877665310 11 134677788888885 99999999988876642110 1 3467788889999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHH--hcC
Q 047648 383 AFAMRNSMLDRGVLPDV------STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL------VTYNILVGALC--KDG 448 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g 448 (537)
|+..+++..+..+.... ..|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999886543221 256777888889999999999999887642 321 23444556664 456
Q ss_pred ChHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMF 461 (537)
Q Consensus 449 ~~~~A~~~~~~~~ 461 (537)
++++|++.|+++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 6888888887664
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=3.1e-08 Score=88.74 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=112.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 243 ADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 243 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666665543 34555556677777777888888888877765542 1255666677777888888888888888877
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 322 ASGLKP-----NVVTSNALINGFC--K--KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 322 ~~~~~~-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+. .| +..+...++.++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 2455555554522 2 237788888888876542 3322333344477778888888888876554
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 393 RG---------VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 393 ~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.. -+-|+.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 21 02256666555555555665 7778888887763
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=3.3e-08 Score=88.50 Aligned_cols=245 Identities=10% Similarity=0.038 Sum_probs=144.3
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+-..-.|++..++.-...+. ..........+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 33444677777766332221 122223333445677777776642 11233433444444333 222
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047648 204 KASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPNEVTFNTLIDGFCKDENISAAMKVF 282 (537)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~ 282 (537)
|+..|+++.+.+ .++..++..+..++.. .|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~---~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAI---LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777766554 3455555667777777 7888888888877765543 125566777777888888888888888
Q ss_pred HHHHhCCCCC-----ChhhHHHHHHH--HHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 283 EEMGSHGIAA-----GVVTYNSLING--LCV--DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 283 ~~~~~~~~~~-----~~~~~~~l~~~--~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
+.|.+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888664 34 24444555544 222 33788888888887654 3443333444447778888888888887
Q ss_pred HHHHcC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 354 DISEQG---------LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 354 ~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
.+.+.. -+.++.++..++......|+ +|.+++.++.+..+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 665431 02255566455555555565 77788888877643
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=6.2e-09 Score=89.74 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
...+......+...|++++|+..|++..... |+ ...|... .... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHH
Confidence 4445556677889999999999999998752 32 2223220 0000 00111223345667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--H
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN--V 415 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~ 415 (537)
++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|+++++..+. +..++..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 777778888888888877776544 6677777788888888888888888888776544 66777777777655443 3
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
+.+...++.... ..|....+.....++...|++++|+..|+++++ ..|+......+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~l 196 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHHHH
Confidence 344455544432 123233344456666777888888888888864 24565444333
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=9.4e-09 Score=81.31 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR 411 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (537)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++...++. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 444555556666666666666666554322 4555555666666666666666666666654332 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 412 EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777776666653 34456666667777777777777777776654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=3.7e-09 Score=108.52 Aligned_cols=174 Identities=14% Similarity=-0.019 Sum_probs=132.7
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 305 CVDGKLDEAVALRDEMM--------ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
...|++++|++.++++. +.. +.+...+..+..++...|++++|...|+++.+.++. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888888888888887 332 345567778888888888888888888888876544 67788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.|++++|...|++.++..+. +...+..+..++...|++++ +..|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888877554 67778888888888888888 88888888765 45677888888888888888888888
Q ss_pred HHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 457 LDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
|++++++. +.+...|..+..++...++
T Consensus 557 ~~~al~l~----P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS----RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS----TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC----cccHHHHHHHHHHHHccCC
Confidence 88886432 2246677777777766554
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.4e-07 Score=85.35 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG--KLDEAVALRDEMMASGLKPNVVTSNALINGF----CKK---KLV 345 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~ 345 (537)
.++|+++++.++..+. -+...|+.--.++...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3567777777766532 24455666666666667 7888888888877754 23344454443333 444 678
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME--DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN------VEG 417 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 417 (537)
++++.+++.+.+..++ +..+|+.-.-++.+.|.++ ++++.++++++.++. |...|+.....+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888887655 7788887777777888887 889999999888776 88888887777777776 888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH-HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK-AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
+++.+.+++... +-|...|+.+...+.+.|+... +..+.+++.+... .-+.++..+..++.+|.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-DQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-TEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999888875 6778889888888888888444 5556666654321 124577889999999999999999999999
Q ss_pred HHHHcCCCCCHHhH
Q 047648 497 ELLEKGLIPNQTTY 510 (537)
Q Consensus 497 ~~~~~g~~p~~~~~ 510 (537)
.+.+. +.|...-|
T Consensus 283 ~l~~~-~Dpir~~y 295 (306)
T 3dra_A 283 LLKSK-YNPIRSNF 295 (306)
T ss_dssp HHHHT-TCGGGHHH
T ss_pred HHHhc-cChHHHHH
Confidence 98763 44654433
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=8.4e-10 Score=89.54 Aligned_cols=121 Identities=7% Similarity=-0.048 Sum_probs=61.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|+..++......+. +...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 33445555555555554443211 23334445555555555555555555555543 33455555555555555555555
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL-LNELLE 500 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 500 (537)
+..|++++++. +-+..+|..+...|.+.|++++|.+. +++.++
T Consensus 85 ~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555432 22445555555555555555544433 355555
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=1.2e-08 Score=91.62 Aligned_cols=101 Identities=10% Similarity=-0.038 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPNVVTS 332 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 332 (537)
+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..++...|++++|+..|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 445555666666677777777777777766421 12 45566666677777777777777777766421 1123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcC
Q 047648 333 NALINGFCK--------KKLVEKARVLFDDISEQG 359 (537)
Q Consensus 333 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 359 (537)
..+..++.. .|++++|...|+++.+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 556666666 777777777777776653
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=1.2e-08 Score=104.67 Aligned_cols=174 Identities=10% Similarity=-0.036 Sum_probs=143.1
Q ss_pred hccCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 270 CKDENISAAMKVFEEMG--------SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|++.|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 33 23456778888899999999999999999998864 4567888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
.|++++|...|++..+..+. +...+..+..++.+.|++++ ...|++.++.++. +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887554 67788889999999999999 9999999987655 788899999999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
|++..+.+ +.+...+..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988764 3346677778888766555
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=7.8e-09 Score=94.07 Aligned_cols=169 Identities=12% Similarity=-0.009 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HH
Q 047648 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTY-NC 404 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ 404 (537)
+.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|...++++....+ +.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHH
Confidence 344556666777777788888888888887776544 566777777888888888888888887766533 33322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|++.|+++++..+. ..+...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~--~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT--AADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--GGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--cccchHHHHHHHHHHH
Confidence 2233556667777777787777764 556777778888888888888888888888763321 2236677888888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELLE 500 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~ 500 (537)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888877777653
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=4e-08 Score=84.85 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHH
Q 047648 312 EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG----RMEDAFAMR 387 (537)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 387 (537)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666543 55566666666666777777777777776654 45566666666666 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHh----cCChHHHHHHHH
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCK----DGKSKKAVSLLD 458 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 458 (537)
++..+.| ++..+..+...|.. .+++++|...|++..+.+.. ..+..+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 56666667776765 67788888888877776521 125677777777777 778888888888
Q ss_pred HHHHchhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 047648 459 EMFKMEKEKKWPNIVTYNVLIKGFCQK-G-----KLEDANGLLNELLEKGL 503 (537)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 503 (537)
++.+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88752 23445666777777643 3 78888888888888764
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=1.3e-09 Score=88.50 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=118.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
|...+...|++++|+..+.......+. +...+..+...|.+.|++++|.+.|++.++..+. +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556678899999999887664222 4556678999999999999999999999998766 88999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH-HHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL-LDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
+++|+..|++.++.. +.+..++..+...|.+.|++++|.+. +++++++. +.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 999999999999975 55688999999999999999876665 58888754 3477888888777777775
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=3.9e-09 Score=88.30 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSRE 412 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 412 (537)
.....+...|++++|...|++..+..+. +...+..+..++...|++++|...++++....+ ++..+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 3344445555555555555554443222 344455555555555555555555555544322 22222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+....+...+++..+.. +.+...+..+..++...|++++|+..|+++++..+. ..+...+..+..++...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG--AQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--TTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--cChHHHHHHHHHHHHHhCCCCcHH
Confidence 12223455555555543 334555566666666666666666666666542211 112445556666666666666666
Q ss_pred HHHHHHH
Q 047648 493 GLLNELL 499 (537)
Q Consensus 493 ~~~~~~~ 499 (537)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=2.5e-07 Score=83.82 Aligned_cols=226 Identities=11% Similarity=-0.004 Sum_probs=132.6
Q ss_pred HHHHHcCCc-hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 047648 124 LAYVKNMKP-HLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG--KFEDVEYVYKEMKRRRIELNLDSFNFVLNGL---- 196 (537)
Q Consensus 124 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 196 (537)
++..+.|.+ ++|++.++.++..+ |-+..+|+.--..+...| +++++++.++.+....++ +..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 333444444 57888888888764 335666777777777777 788888888887776544 566666554444
Q ss_pred Hhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047648 197 CKA---GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY--KADAVFKDMVENGILPNEVTFNTLIDGFCK 271 (537)
Q Consensus 197 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 271 (537)
... +++++++++++++.+... -+..+|+.-.-++.+ .+.++ ++++.++++.+.+.. |..+|+.....+.+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~---l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDT---FDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---hcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 444 677777777777777642 366666666666666 55555 777777777766544 66666665555555
Q ss_pred cCC------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 047648 272 DEN------ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDE-AVALRDEMMASG--LKPNVVTSNALINGFCKK 342 (537)
Q Consensus 272 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 342 (537)
.+. ++++++.++.++...+ -|...|+.+-..+.+.|+... +..+..++.+.+ -+.++..+..+...+.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 554 5566666665555432 255555555555555554322 333333333211 122344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 047648 343 KLVEKARVLFDDISE 357 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~ 357 (537)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555543
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=4e-08 Score=85.79 Aligned_cols=189 Identities=10% Similarity=-0.015 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-P-NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV--ITYN 368 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 368 (537)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999988875311 1 1356777888888899999999999988876443221 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 369 TLIDAYCK------------------EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 369 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.+..++.. .|++++|...|+++++..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 45555544 34555555555555554222 111111110000 000000
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
......+...|.+.|++++|+..|+++++..+. .| ....+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD--TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC--CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011134667889999999999999999874321 11 23678889999999999999999999998854
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.4e-08 Score=102.39 Aligned_cols=153 Identities=7% Similarity=-0.117 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAM 386 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 386 (537)
.|++++|++.++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467778888888777653 345677777778888888888888888887776433 566777778888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD---GKSKKAVSLLDEMFKM 463 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 463 (537)
+++..+..+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8887776544 66777778888888888888888888877764 44567777777888887 8888888888887763
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=1.1e-08 Score=85.52 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA-YC 375 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 375 (537)
+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+..+ +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4445556666677777777776665532 33455666666667777777777777766655432 33322222111 11
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-GLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
..+....|...+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334467777777765444 67777778888888888888888888877764322 2457777788888888888888
Q ss_pred HHHHHHHH
Q 047648 455 SLLDEMFK 462 (537)
Q Consensus 455 ~~~~~~~~ 462 (537)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=2.7e-08 Score=91.52 Aligned_cols=189 Identities=7% Similarity=-0.086 Sum_probs=104.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CC--CHhHHHHHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGL---KP--NVVTSNALINGFCKKKLVEKARVLFDDISEQG--L-SP--SVITYNTLID 372 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~ 372 (537)
.|...|++++|...|.+...... .+ -..+|..+...|...|++++|...|++..+.. . .+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666665555443210 00 12355555666666666666666666554321 0 11 1245566666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVL---P--DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYNILVG 442 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~ 442 (537)
+|.. |++++|+..+++.++.... + ...++..+...+...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6766 7777777777776543111 0 1346667777777888888888888777653 11111 225566666
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
++...|++++|...|++++ +.+..... .......++.++ ..|+.+.+..+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777788888888888876 43221111 112344444444 56666655553
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=2.6e-08 Score=90.54 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-NTLID 372 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 372 (537)
...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...++++.... |+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3444445555555666666666666655542 2344555555666666666666666666554442 222221 12222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSK 451 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 451 (537)
.+.+.++.+.|...+++..+..+. +...+..+...+...|++++|...|+++++.... .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344555666666666666665443 5666666666666677777777777666665311 11456666777777777777
Q ss_pred HHHHHHHHHH
Q 047648 452 KAVSLLDEMF 461 (537)
Q Consensus 452 ~A~~~~~~~~ 461 (537)
+|...|++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7776666654
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=2.2e-08 Score=100.90 Aligned_cols=165 Identities=13% Similarity=-0.003 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVL 351 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 351 (537)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988763 3367889999999999999999999999999864 45678899999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 047648 352 FDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNN 428 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 428 (537)
+++..+.... +...+..+..+|.+.|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887544 6788999999999999999999999999987654 788899999999999 9999999999999987
Q ss_pred CCCCChHHHHHHH
Q 047648 429 GMRAGLVTYNILV 441 (537)
Q Consensus 429 ~~~~~~~~~~~l~ 441 (537)
+ +.+...+..+.
T Consensus 158 ~-p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 G-VGAVEPFAFLS 169 (568)
T ss_dssp T-CCCSCHHHHTT
T ss_pred C-CcccChHHHhC
Confidence 5 33344444443
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=2.1e-06 Score=84.06 Aligned_cols=331 Identities=12% Similarity=-0.012 Sum_probs=187.7
Q ss_pred chHHHHHHHHHHHHHcCC-chHHHHHHHHHhhC-CC-CCChhhHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCCH
Q 047648 114 RNSIIIDMLMLAYVKNMK-PHLGFEAFKRAGDY-GL-KSSVLSCNQLLRALV----KEGKFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 186 (537)
|+..+|...+....+.++ .+....+|+.++.. |. +.+...|...+..+. ..++.+.+..+|+..+......-.
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~ 124 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS 124 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH
Confidence 345555555555544442 23445555555442 21 224455555554432 124455566666666553211111
Q ss_pred HHHHHHHHHHH-------------hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-CCCC---HHHHHHHHHH
Q 047648 187 DSFNFVLNGLC-------------KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG-GIGK---MYKADAVFKD 249 (537)
Q Consensus 187 ~~~~~l~~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~---~~~a~~~~~~ 249 (537)
..|......-. ..+.+..|..+++.+...-...+...|...+.--...+ ...+ ...+..+|++
T Consensus 125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 11221111100 11223344444444432100013345555554432210 0111 3456778888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----
Q 047648 250 MVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG----- 324 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 324 (537)
+.... +-+...|...+..+.+.|+++.|..+|++.... +.+...|.. |....+.++. ++.+.+.-
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 88753 346778888888888999999999999999887 333333322 2222111221 22222210
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCC
Q 047648 325 ----LKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE-GRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 325 ----~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 396 (537)
..+ ....|...+....+.++.+.|..+|++. +. ...+...|...+..-... ++.+.|..+|+...+.-+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 001 2345677777777788899999999998 32 223445554333332333 3699999999999886432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566677777788999999999999972 3567888888888889999999999998875
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=2.6e-07 Score=79.69 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=88.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD 249 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 249 (537)
|.+.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|...+...+.++|++.|++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444444444442 44555555555555555555555555555543 344444444444431111255556666555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHH
Q 047648 250 MVENGILPNEVTFNTLIDGFCK----DENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCV----DGKLDEAVALRDEM 320 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 320 (537)
..+.| +...+..|...|.. .+++++|+.+|++..+.+.. ..+..+..|...|.. .+++++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55443 34445555555554 55566666666665554311 014445555555555 55556666666555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 047648 321 MASGLKPNVVTSNALINGFCKK-K-----LVEKARVLFDDISEQG 359 (537)
Q Consensus 321 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 359 (537)
.+. ..+...+..+..+|... | +.++|...|++..+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 553 12233444444444432 1 5555555555555543
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=1.7e-07 Score=81.80 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV----VT 331 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~ 331 (537)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4456667788899999999999999999875322 1 13567888899999999999999999999863 332 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 332 SNALINGFCK------------------KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 332 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
+..+..++.. .|++++|...|+++.+..+. +...+.+..... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH---
Confidence 4455555543 57899999999999887433 333332221110 001111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
......+...+.+.|++++|+..|+++++.. |.+ ...+..+..+|.+.|++++|++.++.+..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 1112345677788899999999999888763 222 25677888889999999999999888765
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=4.6e-07 Score=82.63 Aligned_cols=166 Identities=8% Similarity=0.001 Sum_probs=119.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGL-SPSV----ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNC 404 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 404 (537)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888766422 1221 12334666667778889999988888874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC-CC-CHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNN-----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK-WP-NIVTYN 476 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~ 476 (537)
+..+|...|++++|..+++++.+. +..+. ..++..+..+|.+.|++++|++.+++++++.+... .+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888742 11122 34788899999999999999999999887543321 12 267888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGK-LEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~-~~~A~~~~~~~~~ 500 (537)
.+..+|.+.|+ +++|.+.+++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999988875
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.8e-08 Score=91.40 Aligned_cols=226 Identities=12% Similarity=0.018 Sum_probs=159.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..|++++|.+++++..+... .. + +...++++.|...|.++ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35677888888887765311 11 0 11157888888888765 356778899999999
Q ss_pred HHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 047648 351 LFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--V-LPD--VSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 351 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
.|.+..+. +-.+ -..+|+.+..+|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887653 1111 13478888999999999999999999876531 1 111 3577888888988 99999999
Q ss_pred HHHHHHHCCCC---C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC-CC-HHHHHHHHHHHHhcCCHHHHHH
Q 047648 421 IMNELVNNGMR---A--GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW-PN-IVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 421 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
.|++..+.... + ...++..+...|...|++++|++.|++++++.+.... +. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998864211 1 1467888999999999999999999999875443211 11 2367777788888999999999
Q ss_pred HHHHHHHcCCCCCH------HhHHHHHHHHHhcCCcCCc
Q 047648 494 LLNELLEKGLIPNQ------TTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 494 ~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~a 526 (537)
.|++.+ . .|+. ..+..++.++ ..|+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 999998 4 3432 2344455544 45655443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.9e-07 Score=80.60 Aligned_cols=130 Identities=10% Similarity=-0.046 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666667777776666553 3456666666666777777777777777666653 3455666666777777
Q ss_pred cCChHHHHHHHHHHHHchhcCC-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 447 DGKSKKAVSLLDEMFKMEKEKK-----------WP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.|++++|++.|+++++..+... .| ....+..+..+|...|++++|...+++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777665332110 01 2356667777777777777777777777763
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=5.8e-08 Score=75.80 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.|++++++. +.+...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----hhhhHHHHHHH
Confidence 456666777777777777777777777664 4566777777777778888888888887777644 34567777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
.+|...|++++|++.|++.++ +.|+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 116 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQ--VDPSNEE 116 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--HCcCCHH
Confidence 788888888888888888777 4565443
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=1.4e-08 Score=81.91 Aligned_cols=104 Identities=8% Similarity=-0.047 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|++.|++++++. +.++..|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHH
Confidence 34567777888888899999999998888875 5667888888889999999999999999888754 336678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+..+|...|++++|+..|++.++ +.|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88899999999999999999888 446665
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=1e-07 Score=81.55 Aligned_cols=159 Identities=11% Similarity=-0.045 Sum_probs=87.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVL-PDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~ 415 (537)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11123445555566666666666666666655441 111 1234555666666667777
Q ss_pred HHHHHHHHHHHHC----CCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC--HHHHHHHHHHHHhcCC
Q 047648 416 EGVRNIMNELVNN----GMR--AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN--IVTYNVLIKGFCQKGK 487 (537)
Q Consensus 416 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 487 (537)
++|...+++..+. +-. .....+..+...+...|++++|...++++++.......+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665543 101 1134466667777777777777777777765432221221 2335666677777777
Q ss_pred HHHHHHHHHHHHH
Q 047648 488 LEDANGLLNELLE 500 (537)
Q Consensus 488 ~~~A~~~~~~~~~ 500 (537)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=1.6e-07 Score=73.26 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
..+......|.+.|++++|+..|++.++..+. +...|..+..++...|++++|+..+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45666777778888888888888887776544 67778888888888888888888888887764 45567788888888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
...|++++|++.|++++++. +-+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888887654 23455555443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=7.4e-08 Score=80.51 Aligned_cols=119 Identities=8% Similarity=0.092 Sum_probs=70.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCh--HH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LCKDGKS--KK 452 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 452 (537)
..|++++|...++...+..+. +...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666666554433 55666666666666666666666666666543 3345556666666 5566666 66
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|...++++++.. +.+...+..+..+|...|++++|...++++++
T Consensus 100 A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD----SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777776666532 23455666666666777777777777777666
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=3.2e-08 Score=79.82 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|++.|++++++. +.++..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 34455556666666666666666666666653 4455666666666666677777777776666533 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..+|...|++++|...|++.++
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777766665
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=2.7e-07 Score=75.87 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
..+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45666777777888888888888887776443 67777788888888888888888888887764 45677788888888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV--LIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...|++++|.+.|+++++.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887643 224444433 33447777888888888877654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=2.3e-06 Score=78.03 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGL-KPNV----VTSNALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNT 369 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 369 (537)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776421 1221 12334666666777888888888888774222 22 236888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHH
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDR-----GVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYN 438 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 438 (537)
+..+|...|++++|...++++++. +..+ ...++..+...|...|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999998888741 1111 2347788888999999999999999888753 21222 57888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGK-SKKAVSLLDEMFKM 463 (537)
Q Consensus 439 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 463 (537)
.+..+|.+.|+ +++|.+.+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999988763
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=4.1e-06 Score=76.61 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=117.9
Q ss_pred HHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-C
Q 047648 125 AYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA-G-K 201 (537)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 201 (537)
.....+..++|+++++.++..+ +-+..+|+.--..+...| .+++++..++.+....++ +..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3334445567888888888875 336667887777777777 488888888888887655 777888777777666 6 7
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY--------KADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
+++++++++++.+... .+..+|+...-++.+ .+.++ ++++.++++.+..+. |..+|+.....+.+.+
T Consensus 141 ~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~---l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSH---FSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHH---HHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---hccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 8888888888887643 366666655444444 33333 677777777776544 6777777776666666
Q ss_pred C-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 047648 274 N-------ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK 309 (537)
Q Consensus 274 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (537)
. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5 566777776666543 2355666655555544443
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=1.3e-06 Score=79.56 Aligned_cols=170 Identities=8% Similarity=-0.025 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HH
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLSPS-----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV---LPD--VS 400 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 400 (537)
.+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334445566666777777777666655422211 11233455566777788888888888765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN--GMRA----GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NI 472 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~ 472 (537)
+++.+...|...|++++|...+++..+. ..+. ...++..+..+|...|++++|++.+++++++......+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888887732 1111 12577888888889999999999988887654321111 25
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 047648 473 VTYNVLIKGFCQKGKLEDA-NGLLNELLE 500 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 500 (537)
.+|..+..+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888888889999888 776777654
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=5.1e-06 Score=75.98 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKK-K-LVEKARVL 351 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~ 351 (537)
.++|+++++.+...+.. +...|+.--.++...| .+++++++++.+.... +-+..+|+.-...+... + ++++++.+
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34566666666654321 4444555555555556 4677777777776653 33455555555555554 4 66677777
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HH
Q 047648 352 FDDISEQGLSPSVITYNTLIDAYCKEGRME--------DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-------VE 416 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------~~ 416 (537)
++++.+..++ +...|+.-.-++.+.|.++ ++++.++++++..+. |...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 7777666444 6666665555555545554 777777777776655 77777777777766665 57
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHch--hcCCCCCHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS--------------------KKAVSLLDEMFKME--KEKKWPNIVT 474 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~--~~~~~~~~~~ 474 (537)
++++.+++++... +-|...|+.+-..+.+.|.. ....+...++.... ...-.+++..
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 7777777777764 55677777766666666654 12222222221100 0011467888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 511 (537)
+..++..|...|+.++|.++++.+.+. ..|-..-|-
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 899999999999999999999998643 556554443
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=1.1e-06 Score=75.82 Aligned_cols=124 Identities=7% Similarity=-0.085 Sum_probs=64.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|++..+.... +...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHccc
Confidence 3344445555555555554442 334445555555555555555555555555444322 44455555555555555
Q ss_pred hHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 380 MEDAFAMRNSMLDRGVL--------------P-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+++|...+++..+.... | ....+..+..++...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555543221 0 1245555666666666666666666666654
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.74 E-value=4.5e-07 Score=70.82 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC---HHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN---IVTYN 476 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~ 476 (537)
..+..++..+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|++.+++++++.+...... ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677778888888888888888888764 45677788888888888888888888888887654422111 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
.+..++...|++++|++.|++.++ ..||+.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 778888889999999999998887 45776665544
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=1.5e-07 Score=75.94 Aligned_cols=100 Identities=14% Similarity=-0.061 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+.+.|++++|...|+.+....+. +...|..+..++...|++++|+..|++.+... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455667777888888888888888888876554 77788888888888888888888888888764 456677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHch
Q 047648 443 ALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+|...|++++|++.|++++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888754
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.71 E-value=5.4e-06 Score=75.47 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--Hh
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPN-----VVTSNALINGFCKKKLVEKARVLFDDISEQGL---SPS--VI 365 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 365 (537)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888887777766432111 12233455566777888888888888765321 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-Ch
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLD---RGVL-P--DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GL 434 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 434 (537)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888889999999999999988773 2111 1 12578888889999999999999999887541 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKA-VSLLDEMFK 462 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 462 (537)
.+|..+..+|.+.|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777888765
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=5e-07 Score=71.00 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444444444444444443222 34444444444444444444444444444432 223344444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 047648 446 KDGKSKKAVSLLDEMF 461 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~ 461 (537)
..|++++|.+.|++++
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444444
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=7.5e-07 Score=68.96 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la 84 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHH
Confidence 344444444444555555555555444432 2334444455555555555555555555554321 22344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555554
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=9.1e-07 Score=72.66 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..+...+...|++++|...|.+..+.... +...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555566666777777777777776665333 5666777777777777777777777777765433 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYN--ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...|++++|...+++..+.. +.+...+. ..+..+...|++++|++.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77788888888887777653 33444443 333346677788888888776654
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.3e-07 Score=85.62 Aligned_cols=195 Identities=12% Similarity=-0.030 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+...|++++|+..|.++.... +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455556666666677777777776666642 235566666666777777777777777776665333 5556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
+|...|++++|...+++..+.++. +...+...+....+ .... .-+........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777766653211 00001111111110 0111 111122222334444444444332 2577777
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK-GKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 500 (537)
|++.++++.+.. +.+......+...+.+. +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH----EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT----SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777765421 22333333444444443 567778877777654
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=6.4e-07 Score=70.04 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.++++++.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~ 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----ccCHHHHHHHH
Confidence 344444555555555555555555555432 2344455555555555555555555555555422 22345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCc
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIP-NQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 523 (537)
.++...|++++|...+++..+.. | +...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 55555666666666665555532 3 334445555555555543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=1.2e-06 Score=68.54 Aligned_cols=120 Identities=15% Similarity=0.039 Sum_probs=103.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 5567888899999999999999999999887544 78889999999999999999999999999874 556788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (537)
++...|++++|.+.|+++++.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998743 34677888888888887764
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.4e-07 Score=75.54 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
.+..+...+...|++++|...|++....+ +.+...|..+..+|...|++++|+..|++++++. +.++..+..+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 94 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHH
Confidence 33444444555555555555555555443 3344455555555555555555555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047648 481 GFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|...|++++|...|++.++
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=7.4e-07 Score=69.48 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++++++. +.+...|..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHH
Confidence 445555666666666666666666666653 3455666666677777777777777777766543 23456666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.++...|++++|...+++.++
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 777777777777777777666
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=1.3e-06 Score=67.55 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=98.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 567888999999999999999999999887543 78889999999999999999999999999874 5677889999999
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 999999999999999998643 34566666666665543
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=8e-06 Score=74.35 Aligned_cols=188 Identities=7% Similarity=0.000 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-hHHHHHH
Q 047648 310 LDEAVALRDEMMASGLKPNVVTSNALINGFCKKK--LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR-MEDAFAM 386 (537)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 386 (537)
+++++.+++.+.... +-+..+|+.-...+...+ .++++..+++++.+..+. |...|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 466677777766653 345566666555566666 367777777777776554 66667666666666666 4777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-----
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSRE--------------GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD----- 447 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 447 (537)
++.+++.++. |...|+.....+... +.++++++.+.+.+... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 7777776655 666666666555544 34677777777777764 55667776555555554
Q ss_pred ------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 448 ------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 448 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
+.++++++.+++++++.+ |. .|..+.. +....|..+++...+.++.+ +.|...-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~p-----d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEP-----EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCT-----TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCc-----cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 457889999999987653 32 3333222 22246778899999999998 5676543
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=3.5e-07 Score=73.66 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|+++++..+. ++..|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445666777777888888888888888776554 67777888888888888888888888887764 4556777788888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 047648 444 LCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (537)
|...|++++|+..|++++++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888763
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=7.2e-07 Score=82.98 Aligned_cols=96 Identities=7% Similarity=-0.095 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
...|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|++++++. +.+...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHH
Confidence 3556666666666667777776666666654 3456666666667777777777777777766543 2345566666
Q ss_pred HHHHHhcCCHHHH-HHHHHHHH
Q 047648 479 IKGFCQKGKLEDA-NGLLNELL 499 (537)
Q Consensus 479 ~~~~~~~g~~~~A-~~~~~~~~ 499 (537)
..++...|++++| ...++.|.
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666 33455544
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=6.8e-07 Score=78.98 Aligned_cols=132 Identities=12% Similarity=-0.096 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILVGAL 444 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 444 (537)
.......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3446677788888888888888887654 333355666667888889999988887554431 111 24677788888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
...|++++|++.|+++.. ....| ....+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 182 ~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 999999999999988863 21113 344667777888889999999999999988 4466
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=1.6e-07 Score=84.97 Aligned_cols=195 Identities=8% Similarity=-0.054 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666667777777777777777766642 2256666777777777777777777777776643 345566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
++...|++++|...|.+..+.++. +...+...+....+. ..+ ..+..........+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777776554211 100111111111111 111 111222223333344443333322 2567777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKD-GKSKKAVSLLDEMFK 462 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 462 (537)
|.+.+++..+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766543 22333334444444444 557777777776654
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=1.3e-06 Score=74.46 Aligned_cols=157 Identities=11% Similarity=-0.032 Sum_probs=83.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCCh
Q 047648 306 VDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRM 380 (537)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 380 (537)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 344555555533332221 1123344455555555555555555555554431 111 1233455566666666677
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHHHHHHHHHHHhcCC
Q 047648 381 EDAFAMRNSMLDR----GVLP--DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMR-AGLVTYNILVGALCKDGK 449 (537)
Q Consensus 381 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 449 (537)
++|...+++..+. +..| ....+..+...+...|++++|...+++..+. +.+ .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665442 1111 1334566666677777777777777766542 111 112345677777888888
Q ss_pred hHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKM 463 (537)
Q Consensus 450 ~~~A~~~~~~~~~~ 463 (537)
+++|.+.+++++++
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=4.1e-06 Score=76.27 Aligned_cols=154 Identities=10% Similarity=0.010 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG--RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-VEGVRNI 421 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~ 421 (537)
+++++.+++.+....++ +..+|+.-..++.+.+ .+++++.+++.+.+..+. |..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67888999999887665 8888988877888877 489999999999998777 89999998888888898 5999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc--
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKD--------------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK-- 485 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 485 (537)
+.++++.. +-|...|+.....+... +.++++++.+.+++... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccC
Confidence 99999876 66788888877777665 45789999999998754 45888888776666655
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCH
Q 047648 486 ---------GKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+.++++++.++++++ +.||.
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 458899999999999 55775
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-06 Score=68.40 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 344455555555555555555555555544222 4445555555555566666666666655554332 45555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666655542 22334444444444433
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=1.1e-06 Score=73.22 Aligned_cols=117 Identities=9% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNV--EGVR 419 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~--~~a~ 419 (537)
|++++|...+++..+..+. +...+..+..+|...|++++|...++++.+..+. +...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444444444444433221 3344444444444444444444444444443222 34444444444 4444444 5555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
..++++.+.. +.+...+..+..+|...|++++|...|+++++
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555544432 22344444455555555555555555555544
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.8e-06 Score=80.30 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--------------VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555432211 46788888888889999999999988888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA-VSLLDEMFK 462 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 462 (537)
. +...|..+..+|...|++++|+..|++.++.. +.+...+..+..++...|+.++| ...|+.|+.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 77888888888899999999999999888874 45677888888888888888887 456666653
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=3.4e-06 Score=64.39 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHHH
Confidence 4455566666666777777777777666653 3456666667777777777777777777776532 2356666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047648 479 IKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..++...|++++|...+++..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777766
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.55 E-value=2.8e-06 Score=67.77 Aligned_cols=100 Identities=12% Similarity=-0.112 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|...|++..... +.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555667777888888888888888776544 67777778888888888888888888887764 4556777778888
Q ss_pred HHhcCChHHHHHHHHHHHHchh
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
|...|++++|.+.|++++++.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888888888876543
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.55 E-value=1.3e-07 Score=80.62 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---------------VSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+...+...|++++|...|++.++...... ...+..+..++...|++++|+..+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666777777777766665422211 2566667777777777777777777777653
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN-GLLNELLE 500 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 500 (537)
+.+...+..+..+|...|++++|++.|++++++. +.+...+..+..++...++.+++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777777777777777777777776543 235566666666666666666555 44455444
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=3.1e-06 Score=65.89 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|++.++..+. +...|..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777788888888888888888776544 67788888888888888888888888888764 4557778888888
Q ss_pred HHhcCChHHHHHHHHHHHHch
Q 047648 444 LCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...|++++|++.|++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888887643
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=2.3e-06 Score=66.86 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVT 474 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~ 474 (537)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++..+.. .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHH
Confidence 3456666777777777777777777777654 4456677777778888888888888888877654321 122 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
+..+..++...|++++|...++++.+. .|+......+.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 777788888888888888888888874 456555555444433
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=3.4e-06 Score=66.67 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444455555555555555555555555544322 44455555555555555555555555555443 233445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 047648 443 ALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++...|++++|+..|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=2.5e-06 Score=70.08 Aligned_cols=99 Identities=12% Similarity=-0.055 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555566666666666666666554433 55556666666666666666666666666553 3345556666666
Q ss_pred HHhcCChHHHHHHHHHHHHch
Q 047648 444 LCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|...|++++|++.|++++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 666666666666666665543
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=1.9e-06 Score=70.79 Aligned_cols=103 Identities=9% Similarity=-0.009 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD----PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 56678889999999999999999999999875 5578899999999999999999999999999754 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+..+|...|++++|...|++.++. .|+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA--EGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCc
Confidence 999999999999999999999984 3544
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=5.1e-06 Score=63.38 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345566666777777777777777777665433 56667777777777777777777777777653 3456677777777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 047648 444 LCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~ 462 (537)
+...|++++|.+.++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777764
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=2.9e-06 Score=67.09 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...+..+...+...|++++|...|++.+... +.+...+..+..++...|++++|+..++++++.. +.+...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHHHH
Confidence 367889999999999999999999999999875 5568899999999999999999999999998754 34788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+..+|...|++++|...+++.++.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.1e-05 Score=78.09 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=91.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCC
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAAGV----------------VTYNSLINGLCVDGKLDEAVALRDEMMASG-LKPN 328 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 328 (537)
...+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566777788888777777664322110 124555566666666666666666554321 0111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 047648 329 V----VTSNALINGFCKKKLVEKARVLFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--GV-- 395 (537)
Q Consensus 329 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 395 (537)
. .+.+.+...+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222223345555555555554321 1111 1234445555555555555555555554422 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 396 LP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 396 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++|...|.++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1234445555555555555555555544432 11111 1233444444455555555555555443
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.46 E-value=4.2e-06 Score=73.93 Aligned_cols=190 Identities=11% Similarity=-0.072 Sum_probs=126.6
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHhCCChhHHHHHHHHHHhC------------CC------
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQL-------LRALVKEGKFEDVEYVYKEMKRR------------RI------ 182 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~------ 182 (537)
..+++..|.+.|.++.... +-....|+.+ ..++...++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999875 3356778777 45666666666666555554431 10
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC--
Q 047648 183 --ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN-- 258 (537)
Q Consensus 183 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 258 (537)
.--......+...+...|++++|.++|+.+...+ |+......+...+.+ .+++++|+..|+...... .|.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~---~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGA---AERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHH---TTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH---cCCHHHHHHHHHHhhccC-CcccH
Confidence 0002234456677888899999999998887653 433344445556666 788888888887544321 111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG--VVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23567777888888888888888888875432133 3355566677788888888888888888753
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=1.9e-06 Score=66.58 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..|++++++. +.+...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 3344555666666777777666666653 3455666666666777777777777777766543 2355566666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047648 482 FCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~ 500 (537)
+...|++++|+..+++.++
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777665
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=4.2e-06 Score=65.20 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAG----LVTYN 438 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 438 (537)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556677777777777777777777766544 566777777777777777777777777765421 111 23566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..++...|++++|++.|+++++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888888775
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=5.6e-07 Score=76.65 Aligned_cols=149 Identities=11% Similarity=-0.076 Sum_probs=106.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL---------------- 434 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 434 (537)
+.+....|+++.+.+.|+.-.+..+. ....+..+...+...|++++|...|++..+.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHH
Confidence 33444556666666655433222111 45567788889999999999999999999863 2222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIV 513 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 513 (537)
..+..+..+|...|++++|+..+++++++. +.+...+..+..+|...|++++|...|++.++. .|+ ...+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHH
Confidence 788899999999999999999999998754 457889999999999999999999999999984 454 5566777
Q ss_pred HHHHHhcCCcCCcc
Q 047648 514 REEMMEKGFIPDIE 527 (537)
Q Consensus 514 ~~~~~~~g~~~~a~ 527 (537)
...+...|..+++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666554
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.2e-05 Score=64.31 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|++.++++++.. +.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----GGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----SCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----ccCHH
Confidence 45556666666666666666666666666543 33 4566666677777777777777777776532 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
.|..+..++...|++++|...+++.++ +.|+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~ 133 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence 666777777777777777777777776 335443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=4e-06 Score=63.34 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++++..+. ..+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHH
Confidence 344555555666666666666666665543 334555666666666666666666666666653211 11456666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 047648 480 KGFCQK-GKLEDANGLLNELLEK 501 (537)
Q Consensus 480 ~~~~~~-g~~~~A~~~~~~~~~~ 501 (537)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6677777666666653
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.38 E-value=6.2e-06 Score=67.46 Aligned_cols=70 Identities=21% Similarity=0.121 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+...|..+..+|.+.|++++|+..+++++++. +.+...|..+..+|...|++++|...|++.++ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 34677888888888888888888888888754 34677888888888888899989888888888 457654
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=3.8e-06 Score=68.38 Aligned_cols=135 Identities=16% Similarity=0.059 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRA-GLV 435 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 435 (537)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665542100 01 135666666777777777777777766543 1011 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
++..+...+...|++++|.+.++++++.......+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777778888888888888888877643221111 245667777888888888888888888765
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.8e-05 Score=74.19 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=143.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-C
Q 047648 228 IDGYCKKGGIGKMYKADAVFKDMVENGILPN----------------EVTFNTLIDGFCKDENISAAMKVFEEMGSHG-I 290 (537)
Q Consensus 228 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 290 (537)
...+.+ .|++++|++.+.++.+...... ...+..+...|...|++++|.+.+..+...- .
T Consensus 11 a~~l~~---~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 11 ARRLVN---EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHH---HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHH---CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345566 7999999999999988643211 1246788999999999999999999876531 1
Q ss_pred CCChh----hHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C
Q 047648 291 AAGVV----TYNSLINGLCVDGKLDEAVALRDEMMAS----GLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ--G 359 (537)
Q Consensus 291 ~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~ 359 (537)
.++.. ..+.+-..+...|+++.|.+++...... +..+ -..++..+...+...|++++|..++.++... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 11221 2233334445678999999999887652 2222 2467788999999999999999999988653 1
Q ss_pred C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 360 L--SP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLP-D--VSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 360 ~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
. .+ ...++..++..|...|++++|..++++.... ...| . ...+..+...+...+++++|...|.+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 11 2457888999999999999999999987643 1122 1 345667777888899999999999888753
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=5.9e-06 Score=62.36 Aligned_cols=97 Identities=11% Similarity=-0.049 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILV 441 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 441 (537)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445556666667777777777777776665433 56666667777777777777777777777653 33 466677777
Q ss_pred HHHHhc-CChHHHHHHHHHHHH
Q 047648 442 GALCKD-GKSKKAVSLLDEMFK 462 (537)
Q Consensus 442 ~~~~~~-g~~~~A~~~~~~~~~ 462 (537)
.++... |++++|.+.++++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 777777 777777777777764
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-05 Score=63.31 Aligned_cols=99 Identities=15% Similarity=0.040 Sum_probs=72.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
+...+..+...+...|++++|...+++..+..+. + ...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4556667777777778888888888777765322 2 5667777777788888888888888777753 445677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+..++...|++++|...|+++++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 788888888888888888888763
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=3.8e-06 Score=82.09 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
.+.+.|++++|++.++++.+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555555432 223445555555555555555555555555544322 34444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAG--LSREGNVEGVRNIMN 423 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 423 (537)
|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555443222 22222223222 444444555554444
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=5.7e-06 Score=64.51 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAG----LVTYN 438 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 438 (537)
..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555666666677777777777776665432 556666666777777777777777776665421 111 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
.+..++...|++++|.+.|+++++. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE-----HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 7777777778888888877777652 2444444444433
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.33 E-value=5e-06 Score=64.14 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+.+.|++++|...+++.++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677778888888888777776544 67777777777778888888888888777764 4456677777778888
Q ss_pred cCChHHHHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~ 462 (537)
.|++++|+..++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877764
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=2.1e-05 Score=61.21 Aligned_cols=103 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNNGMRAGL---VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
.+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++++..+.. ......+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHH
Confidence 34455566677777777777666643 2222 456666677777777777777777776532110 001455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 481 GFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
++...|++++|...|+++++. .|+....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCChHH
Confidence 777777777777777777763 3554433
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=9.6e-05 Score=73.54 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR----------MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (537)
..++|...++++.+.++. +..+|+.-..++...|+ ++++++.++.+.+..++ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 446778888888877555 56677766666666666 88889999998887776 8888888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-----
Q 047648 414 --NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG-KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK----- 485 (537)
Q Consensus 414 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 485 (537)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CCCccHHHHHHHHHHhhccccc
Confidence 6699999999998876 567788888888888888 7888999888887533 45788888888777663
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCC
Q 047648 486 ---------GKLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 525 (537)
+.++++++.+++++. +.|+ ...|......+.+.|..++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999998 4465 4567777777777776554
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=2.9e-06 Score=65.06 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 412 EGNVEGVRNIMNELVNNG--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCCHH
Confidence 355566666666666542 12234556666666666666666666666666532 224556666666666666666
Q ss_pred HHHHHHHHHHH
Q 047648 490 DANGLLNELLE 500 (537)
Q Consensus 490 ~A~~~~~~~~~ 500 (537)
+|+..+++.++
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=2.4e-05 Score=58.95 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN------ 506 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------ 506 (537)
+...+..+...+...|++++|++.|+++++.. +.+...|..+..++...|++++|+..+++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHH
Confidence 45677788888999999999999999998743 34678888999999999999999999999988 4565
Q ss_pred -HHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 507 -QTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 507 -~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
...+..+..++...|..+++...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 456677778888889888887776654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=6.1e-05 Score=58.52 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV---STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVG 442 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 442 (537)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455566677777777777776664332 22 456666667777777777777777776653 222 455666777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~ 462 (537)
++...|++++|...|+++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=5.2e-06 Score=81.09 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=70.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
...+.+.|++++|.+.+++.++..+. +..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33445566666666666666665433 46666666666666777777777776666653 34456666666777777777
Q ss_pred HHHHHHHHHHHHchhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG--FCQKGKLEDANGLLN 496 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (537)
++|.+.|+++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP----HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST----TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777665331 123334444444 666677777777666
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=9e-05 Score=73.73 Aligned_cols=173 Identities=6% Similarity=-0.021 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-
Q 047648 310 LDEAVALRDEMMASGLKPNVVTSNALINGFCKKKL----------VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG- 378 (537)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 378 (537)
.++|++.++++.... +-+...|+.--.++...|+ ++++...++.+.+..++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777777777753 3344556555555555555 88888888888887665 7788888777888888
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---------
Q 047648 379 -RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD--------- 447 (537)
Q Consensus 379 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 447 (537)
+++++++.++++.+..+. +..+|+....++.+.| .++++.+.+.++++.. +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668999999999888766 8888888888888888 8888899888888875 55677887777776663
Q ss_pred -----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 448 -----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 448 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
+.++++++.+++++... +-|...|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhcCCCccc
Confidence 45789999999998754 4478889988888887777544
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.17 E-value=5.2e-06 Score=63.58 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGV--LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
.|++++|+..|++.++.+. +.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677777788877777531 1245567777777888888888888888887764 445677777888888888888888
Q ss_pred HHHHHHHHch
Q 047648 455 SLLDEMFKME 464 (537)
Q Consensus 455 ~~~~~~~~~~ 464 (537)
+.++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888877643
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=2.3e-05 Score=73.66 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRG--------------V-LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (537)
+..+...+.+.|++++|+..+++.++.- . ..+..+|..+..+|.+.|++++|+..+++.++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 3444445555555555555555544310 0 0123444555555555555555555555555543 2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 432 AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
.+...+..+..+|...|++++|++.|++++++. +.+...+..+..++...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555432 12344444444444444444443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.15 E-value=1.6e-05 Score=64.63 Aligned_cols=133 Identities=14% Similarity=0.020 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHH
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLP-DVS 400 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 400 (537)
++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555544332000 01 134555666666677777777766665532 1100 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN----GMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|.+.+++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666677777778888888777776643 111 11356677888888889999999998888763
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=1.8e-05 Score=62.93 Aligned_cols=99 Identities=9% Similarity=-0.049 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc--hhcCC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMR------AG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKM--EKEKK 468 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 468 (537)
+......+.+.|++++|+..|++.++.... .+ ...|..+..++.+.|++++|+..+++++++ ....+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334444445555555555555555543211 01 237888888888888888888888888875 00001
Q ss_pred -CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 469 -WPNIVTY----NVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 469 -~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+-+...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2356677 8888999999999999999999887
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.9e-05 Score=75.49 Aligned_cols=88 Identities=6% Similarity=-0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 445555555556666666666666555543 3345555555666666666666666666665432 12334555555
Q ss_pred HHHHhcCCHHHHH
Q 047648 480 KGFCQKGKLEDAN 492 (537)
Q Consensus 480 ~~~~~~g~~~~A~ 492 (537)
.++.+.|+++++.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=2.2e-05 Score=64.08 Aligned_cols=98 Identities=10% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR--------GV---------LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+......+.+.|++++|+..|.+.++. .+ +.+...|..+..+|.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 00 013356777777778888888888888887776
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
. +.+...|..+..+|...|++++|...|++++++.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4 4556777778888888888888888888887643
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.10 E-value=5e-05 Score=73.75 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...|..+..+|.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 467778888888888888888888888877554 67788888888888888888988888888764 4456777888888
Q ss_pred HHhcCChHHHHH-HHHHHH
Q 047648 444 LCKDGKSKKAVS-LLDEMF 461 (537)
Q Consensus 444 ~~~~g~~~~A~~-~~~~~~ 461 (537)
+.+.|+.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888776653 444443
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=5.8e-05 Score=60.08 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP------D-----VSTYNCLIAGLSREGNVEGVRNIMNELVNN------- 428 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 428 (537)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555566666666666666666543220 2 237778888888888888888888888875
Q ss_pred CCCCChHHH----HHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 429 GMRAGLVTY----NILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 429 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
. +.+...| .....++...|++++|+..|++++++.+.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4 3345677 88889999999999999999999886543
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=9.9e-06 Score=64.34 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK----------SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
+.+++|.+.+++..+.. +.+...|..+..++...++ +++|+..|++++++. +.+...|..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----cCcHHHHHHHHHHH
Confidence 34455555555555443 3344555555555554443 347777777776644 23566677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 483 CQKG-----------KLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 483 ~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
...| ++++|++.|++.++ +.|+...|...++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 6653 77788888888777 5677777766655443
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.04 E-value=2.8e-05 Score=75.43 Aligned_cols=129 Identities=8% Similarity=-0.025 Sum_probs=94.7
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCChHHHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDR---GVLP----DVSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G--MRAGLVTYN 438 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 438 (537)
.+...|++++|+.++++.++. -..| ...+++.+..+|...|++++|..++++.++. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888777643 1112 2357788888888889999888888887653 2 122246788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.|...|...|++++|+.++++++++...-..|+ ..+.+.+..++...+.+++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887554444443 344566677888899999999999999874
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=5.8e-05 Score=70.89 Aligned_cols=91 Identities=8% Similarity=-0.090 Sum_probs=70.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...|..+..+|.+.|++++|+..+++.++..+. +...+..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567778888888889999999999888887544 67788888888889999999999998888764 445667777777
Q ss_pred HHHhcCChHHHHH
Q 047648 443 ALCKDGKSKKAVS 455 (537)
Q Consensus 443 ~~~~~g~~~~A~~ 455 (537)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666544
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.6e-05 Score=73.95 Aligned_cols=148 Identities=10% Similarity=-0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...+..+...+.+.|++++|...|.+..+.. |+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555666666677777777777666542 22211 112222333222111 1266777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH-HHhcCC
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG-FCQKGK 487 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 487 (537)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...+..+... ....+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764 4567778888888888888888888888886533 2244455555544 234556
Q ss_pred HHHHHHHHHHHHH
Q 047648 488 LEDANGLLNELLE 500 (537)
Q Consensus 488 ~~~A~~~~~~~~~ 500 (537)
.+++...|+.|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 7777778888776
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.97 E-value=6.4e-05 Score=57.11 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..+++..+..+. +...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|...|+++++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555444332 44555555555555555555555555555543 23344555555555555555555555555544
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.00047 Score=54.25 Aligned_cols=110 Identities=8% Similarity=-0.075 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHH
Q 047648 379 RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAV 454 (537)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 454 (537)
++++|.+.|++..+.|. |+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666666552 2322 4555555556666666666666653 44556666666665 56677777
Q ss_pred HHHHHHHHchhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047648 455 SLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----KGKLEDANGLLNELLEKG 502 (537)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 502 (537)
+.|+++.+. -++..+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766541 245566666666666 667777777777777655
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.88 E-value=4.4e-05 Score=70.89 Aligned_cols=150 Identities=13% Similarity=0.027 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
....+..+...+.+.|++++|+..|.+.... .|+... +...++.+++...+ ....|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 3556777888889999999999999998875 344332 22233333333222 1236778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCChH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LCKDGKSK 451 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 451 (537)
+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887544 77888899999999999999999999887754 3345555555555 33456677
Q ss_pred HHHHHHHHHHHc
Q 047648 452 KAVSLLDEMFKM 463 (537)
Q Consensus 452 ~A~~~~~~~~~~ 463 (537)
.+...|.+++..
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888753
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=8.6e-05 Score=72.05 Aligned_cols=133 Identities=6% Similarity=-0.095 Sum_probs=93.1
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC-----C
Q 047648 72 SLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY-----G 146 (537)
Q Consensus 72 ~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 146 (537)
.+..+|++++|..+++..++... ...++.++....+++.|...|...|++++|..+++++++. |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE-----------PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35567888888888776554310 0011222334478999999999999999999999887653 2
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 147 --LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR-----RRIE-L-NLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 147 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
.+....+++.|...|...|++++|..+|++..+ .|.. | ...+.+.+..++...+.+++|+.++.++.+.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345788999999999999999998888654 2321 2 2334566667777888889999888888653
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.79 E-value=0.0002 Score=54.23 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
.++..|++..+.. +.+...+..+...|...|++++|+..|+++++.. +.+...|..+..+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677888888765 5678899999999999999999999999998754 3467889999999999999999999999
Q ss_pred HHHHcCC-CCCHHhHHHHHHHHHhc
Q 047648 497 ELLEKGL-IPNQTTYQIVREEMMEK 520 (537)
Q Consensus 497 ~~~~~g~-~p~~~~~~~l~~~~~~~ 520 (537)
+.++... .++......+...+.+.
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHh
Confidence 9987421 12344445554444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=3.8e-05 Score=57.76 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|+..+++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444444443222 334444444444444444444444444443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0015 Score=51.38 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 047648 412 EGNVEGVRNIMNELVN 427 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~ 427 (537)
.++.++|...|++..+
T Consensus 110 ~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 110 VKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3344444444444333
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00042 Score=49.63 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
+...+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45677778888888888888888888888764 346667777888888888888888888887776432 5566666666
Q ss_pred HHHhc
Q 047648 195 GLCKA 199 (537)
Q Consensus 195 ~~~~~ 199 (537)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.70 E-value=0.00045 Score=49.44 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555554322 22344455555555555555555555555555
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.0003 Score=51.73 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
...+..+..+|...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444322 1123344444444444444444444444444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00031 Score=51.68 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...+..+..++...|++++|+..|++.++.. +.+...|..+..+|...|++++|++.|++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999999976 5567899999999999999999999999998643
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=0.0002 Score=56.80 Aligned_cols=85 Identities=8% Similarity=-0.070 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 378 GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN----------VEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
+.+++|.+.++..++..+. +...|..+..++...++ +++|+..|++.++.+ +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3445555555555554433 45555555555444443 347777777777654 34456677777777665
Q ss_pred -----------CChHHHHHHHHHHHHch
Q 047648 448 -----------GKSKKAVSLLDEMFKME 464 (537)
Q Consensus 448 -----------g~~~~A~~~~~~~~~~~ 464 (537)
|++++|++.|+++++++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 47888888888888743
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.49 E-value=0.0023 Score=58.51 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
+.+..+|..+...+...|++++|...+++++.++ |+...|..+...+.-.|++++|.+.+++... +.|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 5567777777777777788888888888888743 6777777778888888888888888888888 55777766
Q ss_pred HH
Q 047648 511 QI 512 (537)
Q Consensus 511 ~~ 512 (537)
.-
T Consensus 347 ~~ 348 (372)
T 3ly7_A 347 YW 348 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.40 E-value=0.0025 Score=60.86 Aligned_cols=93 Identities=13% Similarity=-0.022 Sum_probs=61.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNG---MRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYN 476 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ 476 (537)
.+...|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.++++++++...-..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445677777777777776531 1111 35677777778888888888888877776433322232 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|...|...|++++|..++++.++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777888888888888888877764
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00083 Score=64.00 Aligned_cols=105 Identities=7% Similarity=-0.074 Sum_probs=73.1
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHHHHH
Q 047648 411 REGNVEGVRNIMNELVNN---GMRA----GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYNVLI 479 (537)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~ 479 (537)
..|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++++++...-..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887776652 1112 246788888889999999999999988887544333332 45788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEK---GLIPNQTTYQIVRE 515 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~ 515 (537)
..|...|++++|..++++.++- -+-||......+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9999999999999999988751 23366554444443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.22 E-value=0.0044 Score=44.49 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 431 RAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+.++..+..+..++...++ .++|..+++++++.+ +.++..+..+...+.+.|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556667777776654444 677778887777644 346667777777777788888888888887774
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.16 E-value=0.022 Score=59.75 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=105.7
Q ss_pred HhccCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 269 FCKDENISAAMK-VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 269 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
....+++++|.+ ++..+. +......++..+...|.++.|+++.+.- . .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHH
Confidence 344677777766 442111 0222356667777778888777655311 1 11234556788888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 87775432 2667888888888888888888888887643 33444445556666665555444444
Q ss_pred CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.| .++....+|.+.|++++|++++. +.+++++|..+-+. ..|..
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~-------------------------~~~~~~~A~~lA~~-----~~~~~ 779 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLI-------------------------KSQRFSEAAFLGST-----YGLGD 779 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHH-------------------------HTTCHHHHHHHHHH-----TTCCH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHH-------------------------HcCChHHHHHHHHH-----hCCCh
Confidence 33 12333334555555555555544 34666666665554 22444
Q ss_pred ----HhHHHHHHHHHhcCCc
Q 047648 508 ----TTYQIVREEMMEKGFI 523 (537)
Q Consensus 508 ----~~~~~l~~~~~~~g~~ 523 (537)
.........+...|+.
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHhccch
Confidence 4445555556666653
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.09 E-value=0.0017 Score=47.27 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVS-TYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+.+.|++++|...++++.+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555554443322 333 4444444444555555555555544443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.021 Score=52.27 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++.+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3477778777777777788999999888888875 67777778888888889999999988888864
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.07 E-value=0.003 Score=60.27 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHH
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRG---VLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G-MRAG-LVT 436 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 436 (537)
+..+.+.|++++|+.++++.++.. ..|+ ..+++.+..+|...|++++|+.+++++++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888887541 1222 357788888888899999999888887753 2 1222 467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
++.|...|...|++++|+.++++++++...-..|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999887554444444
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.00 E-value=0.011 Score=43.60 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 432 AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
.+...+..++..+...|+++.|...|+.+++..... -.+...++..+..++.+.|+++.|...++++++ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 344555667777777788888888887777643221 123566777888888888888888888888877 556654
Q ss_pred h
Q 047648 509 T 509 (537)
Q Consensus 509 ~ 509 (537)
.
T Consensus 81 ~ 81 (104)
T 2v5f_A 81 R 81 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0026 Score=60.62 Aligned_cols=96 Identities=4% Similarity=-0.073 Sum_probs=68.3
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDR---GVLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G-MRAG-LVTYNILV 441 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 441 (537)
..|++++|+.++++.++. -..|+ ..+++.+..+|...|++++|..++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888776642 11222 357788888888889998888888887753 2 1222 46788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
..|...|++++|+.++++++++...-..|+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887544444444
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.99 E-value=0.013 Score=45.89 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG---KSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 489 (537)
...+.+-|.+..+.+ +++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+..+|.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHH
Confidence 445566666666655 477778888888888877 5668888888887622 23 3566677777888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHH
Q 047648 490 DANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+|.+.++.+++ +.|+..--..
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~ 109 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHH
Confidence 99999999988 6676543333
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.0014 Score=47.79 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLV-TYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|++.|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455566666666666665543 33344 555566666666666666666666654
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.69 E-value=0.027 Score=40.30 Aligned_cols=64 Identities=5% Similarity=0.011 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
++..+..+..++...++ .++|..++++.++.. +.++.....+...+.+.|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555543333 466666666666554 34455555666666666666666666666654
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.31 E-value=0.054 Score=41.79 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCChH-HHHHHHH------HHHhcCChHHHHHHHHHHHHch
Q 047648 398 DVSTYNCLIAGLSREGNV------EGVRNIMNELVNNGMRAGLV-TYNILVG------ALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|+.+|-..+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...+++++|+++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 666777777777766777 7777788877764 455421 1111111 123448999999999999875
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 465 KEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
...+ ...|......-.+.|+.+.|.+++.+.+..+.+| ...+...++.+
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 3333 7888888888899999999999999999977554 44455555443
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.10 E-value=0.037 Score=43.36 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHH
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG---NVEGVRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVS 455 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 455 (537)
..+.+.|.+..+.+. ++..+...+..++.+.+ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555555444 46666666666777766 4557777777776653 23 23444455566677777777777
Q ss_pred HHHHHHHch
Q 047648 456 LLDEMFKME 464 (537)
Q Consensus 456 ~~~~~~~~~ 464 (537)
.++.+++.+
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777777643
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.44 Score=38.32 Aligned_cols=129 Identities=14% Similarity=0.089 Sum_probs=83.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456778888888877665 2667888888888888888888888877653 334444556677777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
...++-+.....| -++.....+...|+++++.++|.+.- ..|. -.......|-.+.|.++.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~------r~~e------A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG------SLPL------AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT------CHHH------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC------ChHH------HHHHHHHcCcHHHHHHHHH
Confidence 7666665555544 24555666777888888888886551 1121 1111222466677777766
Q ss_pred HH
Q 047648 497 EL 498 (537)
Q Consensus 497 ~~ 498 (537)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 55
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.22 Score=52.06 Aligned_cols=126 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHhCCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 161 LVKEGKFEDVEY-VYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 161 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
....+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+.-. .-+..... .|+
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~---~~~ 667 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALK---VGQ 667 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHH---HTC
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhh---cCC
Confidence 345667776655 43111 1 12233666667777777777776553111 11222333 577
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 87777775432 2667788888888888888888888877643 33444455556666655554444
Q ss_pred HHH
Q 047648 320 MMA 322 (537)
Q Consensus 320 ~~~ 322 (537)
...
T Consensus 733 a~~ 735 (814)
T 3mkq_A 733 AET 735 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.91 E-value=0.077 Score=46.49 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc-----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-
Q 047648 415 VEGVRNIMNELVNNGMRAG---LVTYNILVGALCKD-----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK- 485 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 485 (537)
...|...+++.++.. |+ ...|..+...|.+. |+.++|.+.|++++++.+.+ +..++..+...+++.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~---~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH---DPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT---CSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC---CchHHHHHHHHHHHhc
Confidence 456666666666653 44 55777777777773 78888888888887654211 356666777777774
Q ss_pred CCHHHHHHHHHHHHHcCCC--CCHHhHHHHH
Q 047648 486 GKLEDANGLLNELLEKGLI--PNQTTYQIVR 514 (537)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~ 514 (537)
|+.++|.+.+++.+..... |+....+.+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 7788888888888776655 5554444443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.68 E-value=0.13 Score=39.78 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=70.3
Q ss_pred CchHHHHHHHHHHHHHcCCc------hHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhCCChhHHHHHHHHHHh
Q 047648 113 CRNSIIIDMLMLAYVKNMKP------HLGFEAFKRAGDYGLKSSVL-SCNQLLR------ALVKEGKFEDVEYVYKEMKR 179 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 179 (537)
+.+.++|-..+...-+.|++ ++..++|+++... +||+.. .|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888998 8888999998875 566532 1111111 11233678888888888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 180 RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
..-. =...|......-.+.|++..|.+++.+.+..+.+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4222 2666666666677788888888888888776644
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.67 E-value=0.15 Score=37.30 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG------MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+..-+..+...+.+.++++.|...|+...+.. -.+...++..+..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666655431 1234566677777777777777777777777653
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.52 Score=37.91 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=23.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 270 CKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555543
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.21 E-value=0.0025 Score=59.62 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKR 141 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 141 (537)
++..|..+|.+..+.|.+++....+.+..+.. .++.+=+.|+-+|++.++..+-.++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------------------ke~~IDteLi~ayAk~~rL~elEef--- 138 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------------------RESYVETELIFALAKTNRLAELEEF--- 138 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------------------CSTTTTHHHHHHHHTSCSSSTTTST---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------------cccccHHHHHHHHHhhCcHHHHHHH---
Confidence 44457788888888888888888877665541 2223334566666666665432221
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEM 177 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (537)
+ -.||+.-...+.+-|...|.++.|.-+|..+
T Consensus 139 -l---~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 139 -I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp -T---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred -H---cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 1 1244444555555555555555555555443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.93 E-value=0.38 Score=36.17 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH---HHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCH
Q 047648 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK---AVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 488 (537)
.+..+.+-|.+....| .++..+-..+.+++.+...... ++.++++..+ .+ .| .....-.|.-++.+.|++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3444455555554444 3666666667777777666554 6777776653 11 12 334455566677788888
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 047648 489 EDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~ 507 (537)
++|.+.++.+++ +.|+.
T Consensus 91 ~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 888888888877 55654
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.91 E-value=0.18 Score=44.20 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=80.9
Q ss_pred chHHHHHHHHH-HHHHc--CC------chHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh-----CCChhHHHHHHHH
Q 047648 114 RNSIIIDMLML-AYVKN--MK------PHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVK-----EGKFEDVEYVYKE 176 (537)
Q Consensus 114 ~~~~~~~~l~~-~~~~~--g~------~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~ 176 (537)
.+...|..++. .+... |+ ...|...++++++. .|+ ...|..+...|.+ -|+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 34467777665 33432 43 46778888888885 455 5688889988988 4999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCC--CChhhHH
Q 047648 177 MKRRRIELNLDSFNFVLNGLCKA-GKLNKASDIMEDMKSLGVS--PKVVTYN 225 (537)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~ 225 (537)
.++.+..-+..++......++.. |+.+++.+.+++.+..... |+....+
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 99876543577888888888884 9999999999999987554 4443333
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.77 E-value=4.1e-06 Score=77.76 Aligned_cols=267 Identities=11% Similarity=0.120 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
+..+.+|..|.++.+..++..+|++.|-+. .|+..|..++.+..+.|.+++-...+....+..- ++..=+.|
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHH
Confidence 556688999999999999999998876543 2566788899999999999999988877665533 33444678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+-+|++.++..+..+++. .|+..-...+..-|.. .|.++.|.-+|.. ..-|..|...+.+.
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~---e~lYeAAKilys~---------isN~akLAstLV~L 183 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD---EKMYDAAKLLYNN---------VSNFGRLASTLVHL 183 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHH---SCCSTTSSTTGGG---------SCCCTTTSSSSSSC
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHH---ccCHHHHHHHHHh---------CccHHHHHHHHHHH
Confidence 889999998877544432 3677777777777777 6766665555432 22345556667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|++..|.+.-+ + ..++.||..+-.+|...+++.-|.-+--.++- .+| ....++..|-..|.+++.+.++
T Consensus 184 ~~yq~AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 184 GEYQAAVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SGGGSSTTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHH
Confidence 77776654322 2 23677888888888888888777655544442 222 2334556677888888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 047648 353 DDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR-GVL------PDVSTYNCLIAGLSREGNVEGVR 419 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 419 (537)
+.-... -......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 253 Eaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 253 EAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 776543 123566777777777765 445444444332221 111 02334566666666666666554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.47 E-value=0.33 Score=36.47 Aligned_cols=80 Identities=15% Similarity=-0.010 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG---VRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.+.+-+......|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|++.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433333 455555555556665555444 666666665543 12 223333445566667777777777
Q ss_pred HHHHHHc
Q 047648 457 LDEMFKM 463 (537)
Q Consensus 457 ~~~~~~~ 463 (537)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666653
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=4.4 Score=38.59 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--hHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVN----NGMRAG--LVT 436 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 436 (537)
..|...|...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665421 21111 23445555666666666666666665432 111122 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+...+..+...+++.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555566666666666666666543
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.90 E-value=1.6 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.....+..+...|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555555665555555555433 2344555555666666666666666666666555553
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.20 E-value=9.3 Score=39.84 Aligned_cols=317 Identities=13% Similarity=0.034 Sum_probs=168.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHH
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVV--TYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-------LPNEVTFNTL 265 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~p~~~~~~~l 265 (537)
+....|+.++++.+++.....+...+.. .-..+.-+... .|...++..++.......- .+....-..+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~---ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY---AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 4556788888877777655421011222 22223333444 3444467777777664311 0111112222
Q ss_pred --HHHHhccCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 047648 266 --IDGFCKDENISAAMKVFEEMGSHGIAAGVV--TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING--F 339 (537)
Q Consensus 266 --~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 339 (537)
..+|.-.++ +++.+.+..+....- +... .-..+...+.-.|+.+....++..+.+. .+..+...+..+ +
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGl 534 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHh
Confidence 223333444 355555555554321 1111 1122334455778888888888877764 233344444444 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 340 CKKKLVEKARVLFDDISEQGLSPSVITYN--TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 4678888888888888764 122222222 33446778888877777888888752 2234333334444555777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH--HhcCC-------
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKS-KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF--CQKGK------- 487 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~------- 487 (537)
+.++++.+.+.+ .|...--..+.-+....|.. .++++.+..+.. .+|..+-..-+.++ .-.|.
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~------D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK------DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT------CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777666654 44444444444455555554 678888888863 34544443333333 33443
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCcCCccC
Q 047648 488 LEDANGLLNELLEK-GLIPNQTTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 488 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (537)
....++.+...... .-.|+......+..++..+|...-...
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis 727 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQ 727 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEEC
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEE
Confidence 33333333333332 223556666777788888887554433
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.17 E-value=1 Score=35.58 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
.+.---+..+|.+.|++++|+.+++...
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444557789999999999999887653
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.09 E-value=0.83 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTTY 510 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 510 (537)
.++..+...|++++|+..+..++... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455555666666665555555422 23455566666666666666666666655433 3566655543
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.85 E-value=2.4 Score=32.13 Aligned_cols=138 Identities=16% Similarity=0.114 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-+. .|. ...|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45666666666655543 13444444444444444444444444444321 111 123333333333
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+-.+ ..+....+..++.+...|+-++-.+++..++ .+.+|++...-.+..+|.+.|+..+|.++++++.+.
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l----~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL----KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh----ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3222 1233445555666666677666666666643 133566666677777777777777777777777777
Q ss_pred CCC
Q 047648 502 GLI 504 (537)
Q Consensus 502 g~~ 504 (537)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.46 E-value=0.81 Score=46.48 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.+...|+++-|+++-++++... +-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455666666666666665422 234566666666777777777666666655
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.95 E-value=7.9 Score=42.08 Aligned_cols=142 Identities=10% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------------
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK------------------ 326 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 326 (537)
++..+.+.+.++.+.++.... +.+...--.+..++...|++++|.++|.+.-. |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 334444455555444433222 12333334455677778888888888765421 110
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 327 -----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV----ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 327 -----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
.-..-|..++..+.+.+.++.+.++-....+.....+. ..|..+...+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01123455566666666666666665555443211111 24566666677777777777766666554332
Q ss_pred CHHHHHHHHHHHHhcCC
Q 047648 398 DVSTYNCLIAGLSREGN 414 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~ 414 (537)
...+..++...+..|.
T Consensus 971 -~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp -HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHhCCC
Confidence 3445555555554444
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.18 E-value=1.1 Score=45.56 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhH--HHHHHHHhcCCCCCCHHHHHHHHHHHHHC------CCCC-C
Q 047648 189 FNFVLNGLCKAGK-LNKASDIMEDMKSLGVSPKVVTY--NILIDGYCKKGGIGKMYKADAVFKDMVEN------GILP-N 258 (537)
Q Consensus 189 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~ 258 (537)
...++..+...|+ .+.|..+|+++.+.. |...++ ..++..+... ..+--+|.+++.+..+. ...+ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~--~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHI--ETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 3455555555666 577899999888763 333332 2333333331 12334566666554421 1111 1
Q ss_pred H----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 259 E----------VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 259 ~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
. .....-...+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 112222345667899999999999987752 346789999999999999999999988876
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.37 E-value=5 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAG 143 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 143 (537)
++...-.+.++|...|++++|.+.|++..
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444567788999999999999998764
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.95 E-value=1.4 Score=41.10 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-----NGMRAGLV 435 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 435 (537)
..++..+...|++++|...+..+....+- +...+..+|.++...|+..+|.+.|++..+ .|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555566666666666666666655433 556666666666666766666666666543 25666544
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.70 E-value=14 Score=35.07 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHH-chhcCCCCC--
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFK-MEKEKKWPN-- 471 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-- 471 (537)
.....|...+...|++.+|..++..+... +.... ...+..-+..|...+++.+|..++.++.. .......|+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34456788899999999999999998753 21111 35677778899999999999999998743 122222333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...+...+..+...+++.+|-+.|.++.+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567777888889999999888877754
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.47 E-value=2 Score=32.39 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
.|+..+--.+.-++.++....+..+++.++.++.+.+..-.....-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555544455555554444455566666666665432112344445555666666666666666666654
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.23 E-value=5 Score=30.75 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=34.8
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
|+..+--.+.-++.++....+..+++.+++++...+..-.......+.-++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444444455554444445555556655555332212233334445555666666666665555553
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.15 E-value=24 Score=36.90 Aligned_cols=274 Identities=12% Similarity=0.015 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHhC
Q 047648 237 IGKMYKADAVFKDMVENGILPN--EVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-------AAGVVTYNSLINGLCVD 307 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 307 (537)
.++.++++.++......+-..+ ...-..+.-+....|..+++..++.......- .+....-.++.-++.-.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 4555555555554433110112 22223333444555555567776666554211 01111122233333333
Q ss_pred CC-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 308 GK-LDEAVALRDEMMASGLKPNV--VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 308 ~~-~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
|. -+++.+.+..+....- +.. ..-.++...+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+.
T Consensus 467 GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 467 GSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp TCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHH
Confidence 32 2455566666554321 111 111223333456677777777777766542 112222333444455778888888
Q ss_pred HHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTY--NCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+.+.+... ..|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+
T Consensus 545 ~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 545 DLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 888887764 12222211 234456678888887777888887642 22333333333344456777666666654432
Q ss_pred chhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 463 MEKEKKWPNIVTYNVLIKGFCQKGKL-EDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
...|.+..-..+.-+....|.. .+++.++..+.. .+|..+-...+.++..-|
T Consensus 623 ----~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 623 ----SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp ----CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred ----cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 2234444444455555555554 578888888864 356655555554444433
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.60 E-value=5.5 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+-++.+......|++.+..+.+++|.+.+++..|.++++-++
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444333
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.41 E-value=18 Score=33.51 Aligned_cols=167 Identities=14% Similarity=0.024 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHH-
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKP---NVVTSNALINGFCKKK-LVEKARVLFDDISEQGLSPSVITY- 367 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 367 (537)
..+...+...|.+.|+.++..+++.....- +.-+ .......+++.+.... ..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345677888899999999998888876432 0011 2345677788887643 334444444444321000 11223
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChH
Q 047648 368 -----NTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAGLV 435 (537)
Q Consensus 368 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 435 (537)
..++..|...|++.+|.+++.++.+. ..... ..++..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788888999999998888888764 11111 234556667788889999999888877654 2223333
Q ss_pred HHH----HHHHHHH-hcCChHHHHHHHHHHH
Q 047648 436 TYN----ILVGALC-KDGKSKKAVSLLDEMF 461 (537)
Q Consensus 436 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~ 461 (537)
+.. .-+..+. ..+++..|-..|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 332 2234456 7888888888887764
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.19 E-value=6.3 Score=28.00 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++++-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.01 E-value=17 Score=32.71 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
-|+.....+...|.+.+++.+|...|- . |..++...+..++.-+...+...++--++-+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR----------------- 192 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR----------------- 192 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH-----------------
Confidence 366667777777788888777777662 1 3233335554444444443332222222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+--|...++...|..+++.+.+
T Consensus 193 -aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 -AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCHHHHHHHHHHHHH
Confidence 12235556777777776666553
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.17 E-value=18 Score=32.23 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD---GKSKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
|+.....+...|.+.+++.+|...|-. +-..+...+..++.-+... |...++--++-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra-------------- 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL-------------- 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--------------
Confidence 667777777777777777777766531 1111344444444444333 4444332222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
+--|...|+...|..+++...
T Consensus 195 ----VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 ----VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HHHHHHTTBHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCHHHHHHHHHHHH
Confidence 223445677777777777654
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.40 E-value=10 Score=28.65 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGKS---KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.|+..+--.+.+++.+..+. .+++.+++++.+.. ..-....+-.|.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 56666666677777776654 46777777776421 111355666677788888888888888888887 66765
Q ss_pred HhH
Q 047648 508 TTY 510 (537)
Q Consensus 508 ~~~ 510 (537)
.-.
T Consensus 112 ~QA 114 (134)
T 3o48_A 112 KQV 114 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.88 E-value=15 Score=34.75 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHH----
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN-GMRAGLVTYN---- 438 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---- 438 (537)
+...+...|.+.|++++|.+.+.++... +..--...+...++.+...+++..+...+.++... .-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888899999999988888764 23333556777788888888888888888877643 1112222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.-+..+...+++..|-+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222334456777777777776654
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.86 E-value=12 Score=28.24 Aligned_cols=59 Identities=8% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555566666666666666666666666666666665544 123333454443
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.41 E-value=4.7 Score=34.82 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhc
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKD 447 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 447 (537)
....+.|++++|+.....-++..+. |...-..+++.+|-.|+++.|.+-++...+.. |+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH---
Confidence 4466789999999999888888766 88888899999999999999999988888753 442 3344444331
Q ss_pred CChHHHHHHHHHHHH--chhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 047648 448 GKSKKAVSLLDEMFK--MEKEKKWPNIVTYNVLIKGFC--QKGKLEDANGLLNELLEK 501 (537)
Q Consensus 448 g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 501 (537)
..=.+... ..+.-+.....-...++.++. ..|+.++|..+-.++.+.
T Consensus 79 -------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122221 001111122334455556554 469999999999888764
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.39 E-value=9.5 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
|.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++++-++.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34445555666666667777777777777777777777777777776654 222334455554
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.55 E-value=11 Score=29.82 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
+.--.+..+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445666777777777777766543
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.98 E-value=18 Score=27.69 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=50.2
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGKS---KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.|+..+--.+.+++.+..+. .+++.++++..+.. ..-.....-.|.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~---~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC---CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 46666767777777777654 46777777776511 112344555666788888888888888888888 66765
Q ss_pred H
Q 047648 508 T 508 (537)
Q Consensus 508 ~ 508 (537)
.
T Consensus 111 ~ 111 (144)
T 1y8m_A 111 K 111 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=78.57 E-value=21 Score=27.70 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 047648 133 HLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN 185 (537)
Q Consensus 133 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (537)
+++.++|..|...|+-.. ...|......+-..|++.+|.++|..-++++-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346667777766655433 33466666666777777777777777777665553
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.39 E-value=56 Score=32.46 Aligned_cols=228 Identities=9% Similarity=0.008 Sum_probs=113.5
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH--HHHHHHHHHhCCCCCCHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED--VEYVYKEMKRRRIELNLDSFN 190 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 190 (537)
+.+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+.. .+.-++.+...| +...-.
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~ 174 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVT 174 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666667788888999888888888877665 3456678888888887776543 344444444432 111111
Q ss_pred HHHHHH-----------Hh-cCChhHHHHHHHHHHhCCCCCChh---hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC
Q 047648 191 FVLNGL-----------CK-AGKLNKASDIMEDMKSLGVSPKVV---TYNILIDGYCKKGGIGKMYKADAVFKDMVENGI 255 (537)
Q Consensus 191 ~l~~~~-----------~~-~g~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (537)
.++... .. ..+...+...... ..++.. .+...+.-+.+ .+.+.|...+........
T Consensus 175 ~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar----~d~~~A~~~~~~~~~~~~ 245 (618)
T 1qsa_A 175 VLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR----QDAENARLMIPSLAQAQQ 245 (618)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh----cCHHHHHHHHHhhhhccC
Confidence 111111 00 0111111111110 011211 11122233333 355677777776654322
Q ss_pred CCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 047648 256 LPNEVTF----NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT 331 (537)
Q Consensus 256 ~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (537)
. +.... ..+...+...+...++...+....... .+.....-.+....+.|+++.|...|..|.... ......
T Consensus 246 ~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~ 321 (618)
T 1qsa_A 246 L-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEW 321 (618)
T ss_dssp C-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhH
Confidence 1 22222 222223333442445555555544432 233333334444456677777777777765421 112333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
.--+..++...|+.++|..+|..+.+
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445566677777777777777754
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.59 E-value=18 Score=34.16 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 153 SCNQLLRALVKEGKFEDVEYVYKEMKRR--RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
+...+...+.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555555432 122233445555555555566666655555543
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.36 E-value=46 Score=30.84 Aligned_cols=295 Identities=11% Similarity=0.015 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH-
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSL-GVSP---KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF- 262 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~- 262 (537)
....+...|.+.|+.++..+++...... +.-| .......++..+... .+..+.-.++..+..+..-. +..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDM--DAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3455677777777777777777665432 1011 223345566666654 24444444444444431100 11223
Q ss_pred -----HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHH
Q 047648 263 -----NTLIDGFCKDENISAAMKVFEEMGSHGIAAG-----VVTYNSLINGLCVDGKLDEAVALRDEMMAS--GLKPNVV 330 (537)
Q Consensus 263 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 330 (537)
..++..|...|++.+|.+++..+.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 3578889999999999999888866311112 234555667888899999999888877543 2223333
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHHHc-C-CC-C---CHhHHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCCC
Q 047648 331 TSNA----LINGFC-KKKLVEKARVLFDDISEQ-G-LS-P---SVITYNTLIDAYCKEGRMEDAFAMR-NSMLDRGVLPD 398 (537)
Q Consensus 331 ~~~~----ll~~~~-~~~~~~~a~~~~~~~~~~-~-~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~ 398 (537)
.... -.-.+. ..+++..|...|-+..+. . .. | +...|..+ .+.. .++..+-..++ ......-..|.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCCcc
Confidence 3221 123345 688999998888766432 1 11 1 11223222 2222 23322222222 12111112355
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
...+..++.++ ..+++.....+++.... .+..|+.....+-..+-+ --...+.++.+ +-...++..+
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~------pYsrIsl~~i 322 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE------PYSRVQVAHV 322 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT------TCSEEEHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhH------hhceeeHHHH
Confidence 55566666654 55677777776665443 234454422111111100 00111122221 1233455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 479 IKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
...+.- ..+++...+-+|+..|
T Consensus 323 A~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 323 AESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHTC--CHHHHHHHHHHHHHTT
T ss_pred HHHHCc--CHHHHHHHHHHHHHCC
Confidence 555532 6788888888888764
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.42 E-value=47 Score=29.55 Aligned_cols=112 Identities=8% Similarity=0.042 Sum_probs=59.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA----LRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455556666777777766543221 1233444443333 3444445566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 338 GFCKKKLVE-KARVLFDDIS----EQG--LSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 338 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
.+......+ .-.++++++. +.| ..-++.....+...|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 655433111 1122333332 121 12366777778888888888888776553
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=71.11 E-value=62 Score=29.47 Aligned_cols=26 Identities=4% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGS 287 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 287 (537)
...++.-|...++.++|...++++..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 46677788888899988888887643
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.63 E-value=1.1e+02 Score=30.49 Aligned_cols=49 Identities=12% Similarity=-0.081 Sum_probs=30.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLL 495 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (537)
+..+...|....|...+..+.+ . .+......+.......|.++.++...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~----~--~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK----S--KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHh----c--CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4567788999999888887753 1 23333334444455667777665544
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.42 E-value=64 Score=27.87 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=39.7
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 160 ALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
.+.+.|+++++++....-++..+. |...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455677777777777776666433 6667777778888888888888877777665
No 270
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=65.66 E-value=64 Score=27.62 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+++.++.....+|...+.-.|+- -|--.+++++|.++.++..+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667888888877555556675443333332 23447999999888776654
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.14 E-value=17 Score=33.09 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHh
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAG 143 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 143 (537)
....++.-|...++.++|...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 44578899999999999999998865
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.09 E-value=56 Score=26.69 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=69.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+..+-...+.++.+.+..+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.+ .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444455555555432 2333333332 235555555555666555533 2333333332 355556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
++...|+.+ +...+..+++ .++..+-...+.++.+.+. .++...+..+.+. ++...-.....++...+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK------DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHcCCHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 666666543 3444444432 3455555666666666665 3455555555542 455555555555555443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.81 E-value=57 Score=26.71 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 342 KKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
.+.......+|..|...|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344556677777776654432 34455666666667777777777777777766665
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.25 E-value=35 Score=24.13 Aligned_cols=51 Identities=8% Similarity=-0.062 Sum_probs=23.7
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 268 GFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 268 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
.+.+.|++++|..+.+... .||...|.++.. .+.|-.+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445555555554443332 345555444332 34555555555554444443
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.51 E-value=53 Score=25.89 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 047648 134 LGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD 187 (537)
Q Consensus 134 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 187 (537)
.+.++|..|...|+-.. ...|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 35566777766655433 3346666666667777777777777777776665443
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=63.04 E-value=38 Score=24.03 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (537)
+.+.|++++|..+.+... .||...|.++.. .+.|-.+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555554443332 344444444322 2444444444444444443
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.57 E-value=69 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 412 EGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+.......+|..|...|+-.. ...|......+-..|++.+|.++|+..++
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445677777777776654333 45566667777777777777777777764
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.44 E-value=42 Score=23.75 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
..++|..+-+-+...+. ...+-.+-+..+...|+|++|..+.+.. ..||...|..| +-.+.|-.+++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~AL--ce~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-------PWPALEPWFAL--CEWHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-------CCGGGHHHHHH--HHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHH--HHHhcccHHHHHH
Confidence 44555555555554431 1112222234566777777777665533 36777777665 3456677777777
Q ss_pred HHHHHHHcC
Q 047648 494 LLNELLEKG 502 (537)
Q Consensus 494 ~~~~~~~~g 502 (537)
-+.++-..|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 666666554
No 279
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.81 E-value=44 Score=23.72 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
..++|..+-+-+...+. ...+-.+-+..+...|+|++|..+.+.. ..||...|..|. -.+.|-.+++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~ALc--e~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-------AYPDLEPWLALC--EYRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-------CCGGGHHHHHHH--HHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHHH--HHhcccHHHHHH
Confidence 44555555555554431 1112222234566677777777766533 367777766653 345566666666
Q ss_pred HHHHHHHcC
Q 047648 494 LLNELLEKG 502 (537)
Q Consensus 494 ~~~~~~~~g 502 (537)
-+.++-..|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 665665544
No 280
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=56.84 E-value=91 Score=26.49 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLI-----KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+++.++.....+|...+...|+ -.|--.+++++|..+.++..+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888887755555667544333333 234458999998887766654
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.36 E-value=80 Score=25.69 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=44.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 362 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
++..+-...+.++.+.+..+ +...+..+.+ .++..+-...+.++...+..+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34445455555555555533 3333333332 245555555555555555533 3333333432 34555666666
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~ 461 (537)
.++.+.+. .++...+..+.
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHH
Confidence 66666655 34445555554
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.61 E-value=52 Score=28.25 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=4.8
Q ss_pred HHHhcCChhHH
Q 047648 195 GLCKAGKLNKA 205 (537)
Q Consensus 195 ~~~~~g~~~~a 205 (537)
..++.|+.+.+
T Consensus 11 ~A~~~g~~~~v 21 (285)
T 1wdy_A 11 KAVQNEDVDLV 21 (285)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 33444554433
No 283
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=54.21 E-value=99 Score=26.07 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+++.++.....+|...+.-.|+- -|--.+++++|..+.++..+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677888888887655556675444333332 34458999999888777654
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.62 E-value=36 Score=26.80 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 451 KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK--GLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
+.+.+-+.+.++ ..|..++. .-..++..+...+++-.|.++++.+.+. +...+..|....++.+.+.|.+.+.
T Consensus 14 ~~~~~~~~~~L~--~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 14 DVLLERFKKILR--QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHHH--HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHH--HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445555555544 34555543 3456667777778888999999999987 7777888999999999999987654
No 285
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=51.50 E-value=1.1e+02 Score=25.80 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLI-----KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+++.++.....+|...+.-.|+ -.|--.+++++|.++.++..+
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888887765555667544433333 234457999999887776654
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.44 E-value=1e+02 Score=25.51 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGV 217 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~ 217 (537)
..+..|+.+.+..+++.+.+.|.
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455666655555555544443
No 287
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.42 E-value=1e+02 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHHhCC
Q 047648 273 ENISAAMKVFEEMGSHG 289 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~ 289 (537)
.+.+.|+-++-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34455555555555544
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.20 E-value=87 Score=26.71 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=36.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL---SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDS--FNFVLNGL 196 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 196 (537)
.+...++.|+.+... .+.+.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... -...+...
T Consensus 8 ~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHH
Confidence 344455667665333 333444333221 111234445566665443 33444444333210 11223334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC
Q 047648 197 CKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
+..|+.+ +++.+.+.|..++
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVN 99 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTT
T ss_pred HHcCCHH----HHHHHHHcCCCCC
Confidence 4556654 3344444554443
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.12 E-value=88 Score=27.72 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHh
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAG 143 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~ 143 (537)
..++.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 467888888899999999888764
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.73 E-value=73 Score=24.71 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
....++.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34667777888888888888888774
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.26 E-value=87 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
...++.-|...|+.++|.+.++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4566777777788888888777764
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.24 E-value=1.6e+02 Score=26.45 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL----RDEMMASGLKPNVVTSNALI 336 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~ll 336 (537)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455555667777777777654321 112333444333332 34444455666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----HcC--CCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 337 NGFCKKKLVE-KARVLFDDIS----EQG--LSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 337 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
..+.....-+ .-..+.+++. +.| ..-|+.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6655544311 1122222222 112 2235666667777777777777776655
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.02 E-value=98 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 348 ARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 348 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
...+|..|...|+-. -...|..-...+...|++.+|.++++.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555554443322 23334444445555555555555555555554444
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.76 E-value=1.2e+02 Score=25.59 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=50.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhC--CCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDY--GLKS----SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
-+..+....++++|+++.++..+. +.++ ........+..-...+.-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788899999999988876543 1221 112222333333333333334444444422 3355556666677
Q ss_pred HHhcCChhHHHHHHHHHH
Q 047648 196 LCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~ 213 (537)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777775543
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.62 E-value=1.1e+02 Score=24.51 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 047648 471 NIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~ 487 (537)
+..+-...+.++.+.|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444433
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.73 E-value=1.1e+02 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.039 Sum_probs=13.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047648 336 INGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~ 357 (537)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5556666666666666666543
No 297
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.39 E-value=25 Score=26.86 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
..++..+...+++-.|.++++.+.+.+...+..|....++.+.+.|.+.+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 455666777777888999999999988788899999999999999987654
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.37 E-value=50 Score=27.41 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHHHhCCChhHHHHH
Q 047648 158 LRALVKEGKFEDVEYV 173 (537)
Q Consensus 158 ~~~~~~~~~~~~a~~~ 173 (537)
+...+..|+.+-+..+
T Consensus 46 L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH
Confidence 4444555665444333
No 299
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.98 E-value=26 Score=26.35 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|.+.+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 345566666777888999999999988778899999999999999987543
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.93 E-value=1.3e+02 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLING 303 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (537)
.+.+.|+-++-+|++.|-.|.-..-..++-+
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555555555555544433333333333
No 301
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=42.34 E-value=1.6e+02 Score=25.19 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLI-----KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+.+.++.....+|...+...|+ -.|--.+++++|..+.++..+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 206 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 206 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888887765545667544333333 234457999998887766543
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.17 E-value=2.7e+02 Score=29.39 Aligned_cols=50 Identities=12% Similarity=-0.025 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcC
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ----TTYQIVREEMMEKG 521 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g 521 (537)
...|..++..+-+.+-++.++++.+..++.--..|. ..|..+.++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 347888899999999999999999999974222222 25666777777665
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.11 E-value=1.7e+02 Score=25.15 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=33.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
..+..|+.+-+..+++.-...... +..-.+..+...+..|+. ++.+.+.+.|..++..... -...|+.+-
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~i 236 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEI 236 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHH
Confidence 344566666555555543332211 111111112222334443 3444555556555544321 133455555
Q ss_pred HHHHHHHHH
Q 047648 453 AVSLLDEMF 461 (537)
Q Consensus 453 A~~~~~~~~ 461 (537)
+.-+++.-.
T Consensus 237 v~~Ll~~g~ 245 (285)
T 3kea_A 237 AKMIIEKHV 245 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 555554443
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.72 E-value=1.5e+02 Score=24.21 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=18.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR 411 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (537)
+..+.+.|+-.+-+|++.| .|....-..++.+...
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 3456666666666666666 4443333344434433
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.77 E-value=32 Score=26.05 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=44.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 466 EKKWPNIVTYNVLIKGFCQKG-KLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 12 ~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 12 AGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp TTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 34444332 345556666666 6778999999999988778899999999999999987644
No 306
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.33 E-value=2.4e+02 Score=26.71 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 047648 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFV 90 (537)
Q Consensus 30 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~ 90 (537)
..++.-+...-.++++|+++-. +.+.|....+|..-.+.+...|++++|-.+.-...
T Consensus 332 ~~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 332 ENIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred ccchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 3344444444577888765543 34677888889888999999999999888765543
No 307
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.00 E-value=1.6e+02 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=17.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
+..+.+.|+-.+-+|++.|..|....-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455666666666666665554444333333333
No 308
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=38.90 E-value=1.6e+02 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
.+.+.|+-++-+|++.|-.|.-..-..++-+...-|
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 566666666666666655544444444444444433
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.34 E-value=34 Score=26.54 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
-..++..+...+.+-.|.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3455666777777888999999999888778889999999999999987543
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=37.88 E-value=1.7e+02 Score=24.07 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=30.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCC
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-----VEGVRNIMNELVNNGMRA 432 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 432 (537)
+..+.+.|+-.+-+|++.|..|....-..++.+...-|. ...|...++.....|.+-
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 356677777777777776665544444444444433332 234444445445555433
No 311
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.73 E-value=2.2e+02 Score=25.23 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK--LEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~ 507 (537)
...++.-|...|+.++|.+.++++.. .. .-...+...+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~---p~-f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV---PH-FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC---GG-GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC---Cc-chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 46788889999999999999999831 00 0112233333344444322 34566677777666655433
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.07 E-value=3e+02 Score=26.46 Aligned_cols=61 Identities=7% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh-------hHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL-------SCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
.++|.+++.|...+.++.|..+..+.. ++.+.. -+..+.+...-.+++.+|.+.+....+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 566666677777777777776666654 121111 1122334455556666666666655543
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.05 E-value=36 Score=26.19 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=44.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 466 EKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 16 ~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 16 TGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp TTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 44444332 3445566666677778999999998887777889999999999999987543
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.95 E-value=1.6e+02 Score=25.42 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVS 400 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 400 (537)
..+...+..|..+-+..+++.-...... +..-.+..+...+..|+. ++.+.+++.|..++..
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 3344555666666665555543332111 111111112222334443 3455556666665544
No 315
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.87 E-value=41 Score=21.07 Aligned_cols=29 Identities=14% Similarity=0.041 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 047648 133 HLGFEAFKRAGDYGLKSSVLSCNQLLRAL 161 (537)
Q Consensus 133 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (537)
++|.+.|.+|++..-.++..+|...|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666666554444556666666666
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.51 E-value=1.6e+02 Score=22.66 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (537)
.++..+...+..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444455556666666655544445544444444444444
No 317
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.73 E-value=1.8e+02 Score=23.13 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=30.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhh---HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVT---YNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN 258 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 258 (537)
+...+..|+.+.-.++.+.+++.|..++... ++.|..++... ..+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~--~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG--GNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CcchhhHHHHHHHHHHCCCCCC
Confidence 3344455555555566666666665554321 22222222220 2333344455666666665544
No 318
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=33.11 E-value=2.3e+02 Score=24.25 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+.|.+.|+++.++. ...+|...+.-.|+- .|--.+++++|..+.++..+
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999998877 667776444333332 34458999999988777665
No 319
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.89 E-value=1.8e+02 Score=22.87 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+|..|...|+-.. ...|......+-..|++.+|.++|+..++
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555543222 33444555555555555555555555553
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.82 E-value=3.2e+02 Score=25.72 Aligned_cols=106 Identities=9% Similarity=-0.035 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-------CCChHHHHHHhhhc
Q 047648 43 PVLILRYFCWSTKE-------LRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGK-------FTSVSTIFHALSTC 108 (537)
Q Consensus 43 ~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~-------~~~~~~~~~~~~~~ 108 (537)
.+....++...++. .+...+..+...++.. ..|+..++..+++.+..... ......+-+.+...
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 34444555555443 2233555666655555 46777788777777654322 12333333333322
Q ss_pred cCCCCchHHHHHHHHHHHH---HcCCchHHHHHHHHHhhCCCCCC
Q 047648 109 SDSLCRNSIIIDMLMLAYV---KNMKPHLGFEAFKRAGDYGLKSS 150 (537)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~ 150 (537)
......+...+..++.++. +.++++.|+.++.+|.+.|..|.
T Consensus 245 ~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 245 SARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHH
Confidence 1111111122223333332 34667777777777777664433
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.82 E-value=87 Score=23.38 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK 166 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (537)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455555556666677777777666555555555555666665554
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.81 E-value=92 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 168 EDVEYVYKEMKRRRIELN-LDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 168 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
++...+|..|..+|+.-. ...|......+-..|++.+|.++|+.-++.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455666666666655433 3345556666666677777777776666654333
No 323
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.56 E-value=45 Score=28.35 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=8.2
Q ss_pred hCCChhHHHHHHHHHHhC
Q 047648 163 KEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~ 180 (537)
+.|+.+....+++.+.+.
T Consensus 14 ~~g~~~~v~~ll~~l~~~ 31 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTH 31 (260)
T ss_dssp HHTCGGGGTTHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 444554444444444433
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.56 E-value=1e+02 Score=24.08 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=43.7
Q ss_pred HHHHHHHH-HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhH
Q 047648 134 LGFEAFKR-AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR--RIELNLDSFNFVLNGLCKAGKLNK 204 (537)
Q Consensus 134 ~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 204 (537)
.+++-+.+ +.+.|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+.+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34443433 33446665443 345666777777777888888888776 666677776666777777775543
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.95 E-value=1e+02 Score=24.54 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=5.2
Q ss_pred hcCChhHHHHHH
Q 047648 198 KAGKLNKASDIM 209 (537)
Q Consensus 198 ~~g~~~~a~~~~ 209 (537)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444443
No 326
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.68 E-value=52 Score=20.62 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF-CQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
.++.++.+.+| .|+..... +-.++ ...|+.+.|+..+-+|...+..|+
T Consensus 9 ~ee~l~~L~em--------FP~ld~~~-I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDM--------FPNMDQEV-IRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHH--------CSSSCHHH-HHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHH--------CCCCCHHH-HHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 35566666666 34433211 11222 335788888888888876666665
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.62 E-value=52 Score=22.00 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 466 EKKWPNIVTYNVLIKGFCQKG-KLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 11 ~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 11 AGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp TTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 344444433 34455555554 5667888899998877777889999999999999987643
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.07 E-value=1.7e+02 Score=22.18 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=36.8
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+.+.|.+++..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 445555544432 3455555556666677777777777666666666666666666666443
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.00 E-value=1e+02 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.++.=|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34445555555555555555553
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.91 E-value=3.4e+02 Score=25.50 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=25.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (537)
+.++.+.|+..+.+|.+.|..|....-..+..+...-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788888989999988887765544444444443333
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.78 E-value=48 Score=25.64 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 466 EKKWPNIVTYNVLIKGFCQKG-KLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|..++.. -..++..+...+ .+-.|.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 11 ~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 11 AGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp TTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 34444332 234455565555 6778999999999988778889999999999999987644
No 332
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.47 E-value=1.2e+02 Score=24.04 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=5.7
Q ss_pred HHcCCchHHHHHH
Q 047648 127 VKNMKPHLGFEAF 139 (537)
Q Consensus 127 ~~~g~~~~A~~~~ 139 (537)
+..|+.+....++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3445544444433
No 333
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.42 E-value=4.3e+02 Score=26.46 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALV 162 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (537)
+| .+|-.+.|+|.+++|.++.++.... +..-...+...+..++
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 44 4667788888888888888776542 1111234555555555
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.98 E-value=2e+02 Score=22.51 Aligned_cols=52 Identities=6% Similarity=0.070 Sum_probs=29.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLP--DVSTYNCLIA-G-----LSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 427 (537)
..|++-+|-++++.+=.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777777776665544344 3445555555 1 2345666666666666554
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.90 E-value=1.7e+02 Score=22.45 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=36.5
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 444555544432 23455555554 56667777777777766666666666666666666543
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.88 E-value=57 Score=25.03 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=42.7
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 466 EKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 466 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|....++.+.+.|.+...
T Consensus 13 ~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 13 RGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp TTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 44444432 234455555556 678999999999888777889999999999999987654
No 337
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.36 E-value=5.2e+02 Score=27.11 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 333 NALINGFCKKKL---VEKARVLFDDISEQ----GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 333 ~~ll~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
..++...|..|. .+.|.+.|+..... .+.|+.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 445667777776 45677788776543 1344432 333334456677776667777777653 44455678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNG-MRAGLVTYNILVGALCKD-GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFC 483 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (537)
+.+++...+.....++++.....+ +++. ... .++.+.... ...+.|.+.+.+=.+.-..........+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888889888888888776543 2222 222 233333332 223455555544322111222233345667777777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 047648 484 QKGKLEDANGLLNELLEK 501 (537)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~ 501 (537)
..-.-++-.+-++.+.+.
T Consensus 843 ~~~~t~~~~~~~~~f~~~ 860 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKKN 860 (909)
T ss_dssp TTCCSHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHhh
Confidence 655555555555666543
No 338
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.32 E-value=2.2e+02 Score=22.70 Aligned_cols=170 Identities=9% Similarity=-0.046 Sum_probs=102.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 047648 292 AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLI 371 (537)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (537)
++...-...+.++...+..+.. ..+.++.. .++...-...+.++...+..+....+. .+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 4666666667777777764433 33334443 356666677777777777654433333 3333 35777777778
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChH
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSK 451 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (537)
.++.+.+..+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|. .
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 8888887754 4444444543 357777777777777777643 4444445544 3577777788888888876 4
Q ss_pred HHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 452 KAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
++...+..+.+ .++..+-...+.++.+
T Consensus 169 ~~~~~L~~~l~------d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 169 RVRAAMEKLAE------TGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHH------HCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh------CCCHHHHHHHHHHHHH
Confidence 46666666653 2455444444455444
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=29.24 E-value=4.5e+02 Score=26.32 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh---
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK--- 376 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 376 (537)
....+.-.|+++.|++.+... ...+.+.+...+..|.-.+ .. +.+......-...-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---ID----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CC----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 455667789999999887654 2344455444444433222 11 111111101113346677877774
Q ss_pred cCChHHHHHHHHHHH
Q 047648 377 EGRMEDAFAMRNSML 391 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~ 391 (537)
..+..+|++.|-.+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 678888888877763
No 340
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.90 E-value=91 Score=23.62 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 158 LRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
+..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333334444555555544444444444444444444444
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.52 E-value=1.9e+02 Score=21.69 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=36.6
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344555544432 34555565555 56677788887777766666666666666666666443
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.31 E-value=1.8e+02 Score=22.19 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=33.8
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKL 202 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (537)
+.+.|.+++..- ..++..+...+ .-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 334455544432 23444455555 556777777777766666666666666666666544
No 343
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.14 E-value=40 Score=28.71 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=7.6
Q ss_pred HhcCChHHHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEM 460 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~ 460 (537)
++.|+.+-+.-++++-
T Consensus 233 ~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhC
Confidence 3445555444444443
No 344
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.42 E-value=2.6e+02 Score=22.86 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=7.2
Q ss_pred ccCCHHHHHHHHHHHHh
Q 047648 271 KDENISAAMKVFEEMGS 287 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~ 287 (537)
..|+.+.+..+++.+.+
T Consensus 18 ~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 34444444444443333
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.14 E-value=2.4e+02 Score=22.10 Aligned_cols=53 Identities=11% Similarity=0.010 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHH------HHHhcCChHHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRA--GLVTYNILVG------ALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+.|++-+|-++++..-.....+ ....|..||+ ...+.|+...|..++.++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34578888888888777654344 3455566665 23446777777777777654
No 346
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.13 E-value=2.5e+02 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 468 KWPNIVTYNV--LIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 468 ~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
..|...+|-. ....|...|-.++...+|..+++.+
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kD 238 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKD 238 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcC
Confidence 3566555543 3455778999999999999888754
No 347
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.50 E-value=3.7e+02 Score=24.09 Aligned_cols=239 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
..++.-|...|+.++|...++++..-...+...........=.+....+.+..++..+.+. ...+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~----~~is~~~~~~Gf--- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA----GHLSTAQYYQGL--- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT----TSSCHHHHHHHH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC----CCCCHHHHHHHH---
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKM-YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
....+.++++.-. -|....+-..+-+.+-..+.=.. +-...+.+.+...|. .......++..+.+....+.+
T Consensus 88 ---~~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 88 ---YEILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp ---HHHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHHHH
T ss_pred ---HHHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHH--HHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 279 MKVFEE--MGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 279 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
.++|.+ +.-..+-|.... +..+.+....+........-......+-...-..+...+...-..+......+...
T Consensus 161 ~~~~~~s~l~l~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~ 236 (339)
T 1ug3_A 161 GTLWREAGLSWKEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANL 236 (339)
T ss_dssp HHHHHHTTCCGGGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q ss_pred HcCCCCCHhHHHHHHHHHHh
Q 047648 357 EQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~ 376 (537)
.....++...-.+++.+.++
T Consensus 237 ~~~~~~~~~~~~~l~~a~~~ 256 (339)
T 1ug3_A 237 SEQQIVSNTLVRALMTAVCY 256 (339)
T ss_dssp CHHHHTCHHHHHHHHHHHHH
T ss_pred ChhhCChHHHHHHHHHHHHH
No 348
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.81 E-value=3e+02 Score=22.89 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 047648 133 HLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN 185 (537)
Q Consensus 133 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (537)
+++.++|..|...|+-.. ...|......+-..|++.+|.++|..-++++-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 466677777777765544 34567777777778888888888888777766653
No 349
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.12 E-value=3.2e+02 Score=24.00 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHhcCChhHHHHHH
Q 047648 195 GLCKAGKLNKASDIM 209 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~ 209 (537)
..+..|+.+-+..++
T Consensus 174 ~A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 174 DAAEKGHVEVLKILL 188 (337)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH
Confidence 344566665444443
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.51 E-value=3.8e+02 Score=28.28 Aligned_cols=133 Identities=14% Similarity=0.057 Sum_probs=69.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
++..+...|..+-+.++..- .+.++..--.+..+|...|++++|...|+++-. |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 45555566666554443221 222333333566677777888888877776532 22211100000
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcC
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKG 486 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 486 (537)
.+....++... +. ......-|..++..+-+.+.++.+.++-+.+++.-... .+ ....|..+.++.+..|
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d-d~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC-CHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHhhCC
Confidence 00001111100 00 01123467888888889999999999888888632111 11 2347888888877655
No 351
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=23.18 E-value=3.7e+02 Score=23.30 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHH
Q 047648 44 VLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLM 123 (537)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (537)
+....++....+..+...+......+... ..|+...+...++.+...+.......+...+.. ........++
T Consensus 164 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~--~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~------~~~~~~~~l~ 235 (319)
T 2chq_A 164 EAMKKRLLEICEKEGVKITEDGLEALIYI--SGGDFRKAINALQGAAAIGEVVDADTIYQITAT------ARPEEMTELI 235 (319)
T ss_dssp HHHHHHHHHHHHTTCCCBCHHHHHHHHHT--TTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCC------CCHHHHHHHH
Confidence 33444444444444445555554444422 255666666666655543322232333222221 1111222333
Q ss_pred HHHHHcCCchHHHHHHHHHhh-CCCC
Q 047648 124 LAYVKNMKPHLGFEAFKRAGD-YGLK 148 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~-~~~~ 148 (537)
.... .|+.++|++++..+.. .|..
T Consensus 236 ~~~~-~~~~~~a~~~l~~l~~~~g~~ 260 (319)
T 2chq_A 236 QTAL-KGNFMEARELLDRLMVEYGMS 260 (319)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHSCCC
T ss_pred HHHH-hCCHHHHHHHHHHHHHHcCCC
Confidence 3332 3566677776666665 5543
No 352
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.75 E-value=4.1e+02 Score=24.43 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=83.7
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhc
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVL--SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD--SFNFVLNGLCKA 199 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 199 (537)
..-+..|+.+- ++.+.+.|..++.. .....+...+..|+.+-+..+++. |..++.. .-...+...+..
T Consensus 19 ~~Aa~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 19 HVASFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHHH
T ss_pred HHHHHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHC
Confidence 33455666553 33344444444322 112334445566776655555543 3222111 011234445566
Q ss_pred CChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccC
Q 047648 200 GKLNKASDIMEDMKSLGVSPKV---VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN---EVTFNTLIDGFCKDE 273 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 273 (537)
|+.+-+.-++ +.|..++. .-.+.+..+. . .|+.+-+. .+.+.+..++ ...+ ..+...+..|
T Consensus 91 g~~~~v~~Ll----~~ga~~~~~~~~g~t~L~~A~-~---~g~~~~v~----~Ll~~~~~~~~~~~~g~-t~L~~A~~~g 157 (437)
T 1n11_A 91 GHTNMVKLLL----ENNANPNLATTAGHTPLHIAA-R---EGHVETVL----ALLEKEASQACMTKKGF-TPLHVAAKYG 157 (437)
T ss_dssp TCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHH-H---HTCHHHHH----HHHHTTCCSCCCCTTSC-CHHHHHHHTT
T ss_pred CCHHHHHHHH----hCCCCCCCCCCCCCcHHHHHH-H---cCCHHHHH----HHHhCCCCCcCCCCCCC-CHHHHHHHcC
Confidence 7765444443 34444332 2233333333 3 36554433 3334443222 1111 2233445567
Q ss_pred CHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVT--YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT--SNALINGFCKKKLVEKAR 349 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~ 349 (537)
+.+-+..+ .+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+-+.
T Consensus 158 ~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 158 KVRVAELL----LERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp CHHHHHHH----HHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 76544333 34443333211 11223344556665433 34444444333211 112234445667665554
Q ss_pred HHH
Q 047648 350 VLF 352 (537)
Q Consensus 350 ~~~ 352 (537)
.++
T Consensus 230 ~Ll 232 (437)
T 1n11_A 230 SLL 232 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 353
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.29 E-value=1.7e+02 Score=19.24 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=30.3
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334454444333 33444444443 445566666666665555555555555555555553
No 354
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.14 E-value=1.7e+02 Score=20.24 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=9.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~ 496 (537)
-....+.+.|++++|++..+
T Consensus 20 RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHH
Confidence 33444444555555444333
No 355
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.91 E-value=2.5e+02 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=10.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q 047648 299 SLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 356
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.81 E-value=3.4e+02 Score=22.44 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA 432 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (537)
.+....+++.+.+.|...|...-...+......+.+ ....+-+++...|+.+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~ 143 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGE 143 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCH
Confidence 344556667777777665554445555554442221 2445556666777644
No 357
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.74 E-value=1.7e+02 Score=23.92 Aligned_cols=16 Identities=6% Similarity=-0.050 Sum_probs=7.6
Q ss_pred HHHHhccCCHHHHHHH
Q 047648 266 IDGFCKDENISAAMKV 281 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~ 281 (537)
+...+..|+.+-+..+
T Consensus 46 L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH
Confidence 3444555665444333
No 358
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.34 E-value=7.2e+02 Score=26.01 Aligned_cols=159 Identities=12% Similarity=0.090 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 047648 298 NSLINGLCVDGK---LDEAVALRDEMMASG----LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTL 370 (537)
Q Consensus 298 ~~l~~~~~~~~~---~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (537)
..++...|..|. .+.|.+.|+.....+ ++||. -..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345666777776 456778888776542 44543 333344445667776666667766654 244455678
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChHHHHHHHHHHHh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRG-VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN---GMRAGLVTYNILVGALCK 446 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 446 (537)
+.+++...+.+...++++...... +++ ......+..........+.+.+.+..=.+. ....+...+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~-qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRK-QDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCG-GGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCch-hhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888888888888887776543 332 222222222222222334455544432211 122334456777777776
Q ss_pred cCChHHHHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~ 462 (537)
.-..++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 6665666666666653
Done!