Query 047650
Match_columns 75
No_of_seqs 134 out of 968
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 13:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 1.5E-28 3.3E-33 194.9 5.8 72 1-74 83-155 (1153)
2 PLN03194 putative disease resi 99.9 6.5E-23 1.4E-27 137.3 5.0 58 1-74 98-156 (187)
3 PF01582 TIR: TIR domain; Int 99.0 5.1E-11 1.1E-15 75.2 0.8 63 1-63 72-140 (141)
4 smart00255 TIR Toll - interleu 98.6 2.4E-07 5.3E-12 57.4 5.9 66 1-67 72-139 (140)
5 KOG2792 Putative cytochrome C 82.6 1.3 2.9E-05 31.7 2.6 27 1-27 155-186 (280)
6 TIGR02453 conserved hypothetic 65.9 9.4 0.0002 26.1 3.3 55 17-74 94-152 (217)
7 cd01241 PH_Akt Akt pleckstrin 65.5 6.8 0.00015 23.3 2.3 17 50-66 86-102 (102)
8 PF12128 DUF3584: Protein of u 65.5 1.4 3E-05 36.7 -0.9 18 16-33 34-51 (1201)
9 cd01251 PH_centaurin_alpha Cen 57.7 13 0.00029 22.1 2.6 19 50-68 84-102 (103)
10 COG0059 IlvC Ketol-acid reduct 57.3 9.8 0.00021 28.0 2.3 59 1-62 229-310 (338)
11 cd01219 PH_FGD FGD (faciogenit 57.1 12 0.00027 22.1 2.4 18 50-67 83-100 (101)
12 KOG1136 Predicted cleavage and 55.6 9.9 0.00021 28.7 2.1 19 5-23 222-241 (501)
13 smart00233 PH Pleckstrin homol 55.6 15 0.00033 19.6 2.5 17 50-66 85-101 (102)
14 TIGR00295 conserved hypothetic 55.4 27 0.0006 22.5 4.0 33 36-68 131-163 (164)
15 cd01266 PH_Gab Gab (Grb2-assoc 53.3 15 0.00032 21.9 2.4 17 50-66 92-108 (108)
16 PF00169 PH: PH domain; Inter 53.0 18 0.0004 19.8 2.6 17 50-66 87-103 (104)
17 cd01260 PH_CNK Connector enhan 52.7 15 0.00032 21.1 2.2 16 50-65 81-96 (96)
18 KOG1233 Alkyl-dihydroxyacetone 51.8 13 0.00028 28.7 2.2 22 1-22 169-191 (613)
19 PF07756 DUF1612: Protein of u 51.6 16 0.00034 23.5 2.3 20 51-70 9-28 (128)
20 cd01238 PH_Tec Tec pleckstrin 51.1 16 0.00034 21.9 2.2 16 50-65 91-106 (106)
21 cd01246 PH_oxysterol_bp Oxyste 49.8 18 0.00039 20.0 2.2 16 50-65 76-91 (91)
22 PF10579 Rapsyn_N: Rapsyn N-te 49.2 13 0.00027 22.0 1.5 20 51-70 22-41 (80)
23 cd01235 PH_SETbf Set binding f 48.7 20 0.00044 20.5 2.4 16 50-65 85-100 (101)
24 PRK05225 ketol-acid reductoiso 46.1 9 0.00019 29.6 0.7 58 1-64 253-335 (487)
25 COG1904 UxaC Glucuronate isome 45.7 26 0.00055 27.0 3.0 67 3-69 324-400 (463)
26 PRK10072 putative transcriptio 44.0 20 0.00044 21.6 1.9 59 2-60 7-68 (96)
27 cd00821 PH Pleckstrin homology 42.8 25 0.00055 18.5 2.1 16 50-65 81-96 (96)
28 cd01250 PH_centaurin Centaurin 42.5 24 0.00052 19.6 2.0 15 50-64 79-93 (94)
29 cd00900 PH-like Pleckstrin hom 42.2 26 0.00056 18.6 2.1 16 50-65 84-99 (99)
30 PF15409 PH_8: Pleckstrin homo 42.1 28 0.00061 20.8 2.3 15 51-65 74-88 (89)
31 PF03429 MSP1b: Major surface 42.0 26 0.00056 27.5 2.5 46 18-68 207-253 (726)
32 cd01244 PH_RasGAP_CG9209 RAS_G 40.4 27 0.00059 20.9 2.1 16 50-65 83-98 (98)
33 cd01252 PH_cytohesin Cytohesin 40.3 32 0.0007 20.9 2.4 18 50-67 97-114 (125)
34 cd01230 PH_EFA6 EFA6 Pleckstri 40.1 31 0.00067 21.4 2.3 19 50-68 95-113 (117)
35 PF09838 DUF2065: Uncharacteri 39.5 26 0.00055 19.2 1.7 17 56-72 21-37 (57)
36 PF01320 Colicin_Pyocin: Colic 38.5 26 0.00057 20.8 1.7 15 53-71 69-83 (85)
37 PHA03068 DNA-binding phosphopr 36.9 31 0.00068 24.7 2.2 23 2-24 175-200 (270)
38 COG1999 Uncharacterized protei 36.8 50 0.0011 22.2 3.1 38 2-39 87-127 (207)
39 PHA00407 phage lambda Rz1-like 36.6 25 0.00055 20.8 1.4 23 51-73 24-51 (84)
40 PF15410 PH_9: Pleckstrin homo 35.5 44 0.00095 20.3 2.5 17 50-66 102-118 (119)
41 COG1782 Predicted metal-depend 33.8 38 0.00082 26.9 2.3 20 3-22 395-416 (637)
42 cd01040 globin Globins are hem 33.5 1E+02 0.0023 18.0 4.0 33 36-68 104-139 (140)
43 PRK05422 smpB SsrA-binding pro 33.2 44 0.00095 21.9 2.3 33 3-35 86-119 (148)
44 PF13676 TIR_2: TIR domain; PD 33.0 34 0.00075 19.5 1.7 25 1-30 67-91 (102)
45 PRK02797 4-alpha-L-fucosyltran 32.0 1.2E+02 0.0026 22.4 4.5 17 51-67 303-319 (322)
46 cd01263 PH_anillin Anillin Ple 31.7 42 0.00092 21.0 2.0 16 50-65 107-122 (122)
47 TIGR00086 smpB SsrA-binding pr 31.1 49 0.0011 21.6 2.2 33 3-35 82-116 (144)
48 COG1155 NtpA Archaeal/vacuolar 30.9 56 0.0012 25.9 2.9 34 37-70 312-345 (588)
49 PF15043 CNRIP1: CB1 cannabino 30.7 23 0.00051 23.5 0.7 7 20-26 22-28 (161)
50 KOG4116 Ubiquinol cytochrome c 30.5 56 0.0012 19.7 2.2 29 21-49 22-50 (90)
51 cd00153 RalGDS_RA Ubiquitin do 30.1 37 0.00081 20.4 1.4 15 14-28 59-77 (87)
52 KOG2865 NADH:ubiquinone oxidor 29.9 28 0.0006 25.9 1.0 27 12-40 83-111 (391)
53 PF04661 Pox_I3: Poxvirus I3 s 29.4 44 0.00095 23.9 1.9 23 2-24 165-190 (262)
54 cd01233 Unc104 Unc-104 pleckst 28.7 61 0.0013 18.9 2.3 16 50-65 82-97 (100)
55 PF12006 DUF3500: Protein of u 28.3 36 0.00079 24.5 1.4 20 16-35 143-162 (313)
56 cd01265 PH_PARIS-1 PARIS-1 ple 27.8 69 0.0015 18.6 2.4 16 50-65 78-93 (95)
57 cd01257 PH_IRS Insulin recepto 27.8 63 0.0014 19.4 2.2 16 50-65 86-101 (101)
58 PF10657 RC-P840_PscD: Photosy 26.9 27 0.00058 22.6 0.5 9 17-25 115-123 (144)
59 PF02630 SCO1-SenC: SCO1/SenC; 26.8 66 0.0014 20.7 2.4 40 2-41 72-113 (174)
60 PF08921 DUF1904: Domain of un 26.8 45 0.00098 20.5 1.5 19 2-20 22-42 (108)
61 COG2719 SpoVR Uncharacterized 26.2 76 0.0017 24.6 2.8 43 6-48 20-75 (495)
62 PF07521 RMMBL: RNA-metabolisi 26.1 77 0.0017 15.9 2.1 17 3-21 21-38 (43)
63 smart00692 DM3 Zinc finger dom 26.1 61 0.0013 17.1 1.8 16 48-63 4-19 (59)
64 COG1956 GAF domain-containing 26.0 41 0.0009 22.4 1.3 15 12-26 112-126 (163)
65 KOG2540 Cytochrome oxidase ass 26.0 33 0.00071 24.3 0.8 18 15-32 213-230 (269)
66 PRK09857 putative transposase; 25.6 61 0.0013 23.0 2.1 25 6-30 100-132 (292)
67 PRK02925 glucuronate isomerase 25.2 1.4E+02 0.003 23.1 4.0 65 4-69 327-402 (466)
68 PF03641 Lysine_decarbox: Poss 25.0 77 0.0017 19.6 2.3 25 2-26 67-93 (133)
69 cd01253 PH_beta_spectrin Beta- 24.8 72 0.0016 18.4 2.1 15 50-64 89-103 (104)
70 PF07386 DUF1499: Protein of u 24.6 46 0.00099 20.3 1.2 15 49-63 104-118 (118)
71 PF05485 THAP: THAP domain; I 24.2 68 0.0015 17.8 1.8 19 49-67 24-42 (84)
72 PF15411 PH_10: Pleckstrin hom 24.1 46 0.00099 20.6 1.1 12 51-62 105-116 (116)
73 cd01247 PH_GPBP Goodpasture an 23.9 84 0.0018 18.2 2.2 15 50-64 76-90 (91)
74 KOG4302 Microtubule-associated 23.7 1.6E+02 0.0036 23.7 4.3 63 12-74 139-202 (660)
75 COG0124 HisS Histidyl-tRNA syn 23.5 51 0.0011 25.0 1.5 27 2-33 241-268 (429)
76 cd03063 TRX_Fd_FDH_beta TRX-li 23.4 28 0.00061 20.8 0.1 12 21-32 60-72 (92)
77 PTZ00240 60S ribosomal protein 23.3 83 0.0018 23.0 2.5 50 15-69 184-233 (323)
78 PF04333 VacJ: VacJ like lipop 23.0 48 0.001 22.6 1.1 27 14-43 118-144 (200)
79 cd06418 GH25_BacA-like BacA is 22.9 1.5E+02 0.0032 20.1 3.5 22 4-28 57-78 (212)
80 PF15413 PH_11: Pleckstrin hom 22.6 98 0.0021 18.6 2.4 16 50-65 97-112 (112)
81 cd01237 Unc112 Unc-112 pleckst 22.6 98 0.0021 19.1 2.4 17 50-66 87-103 (106)
82 cd01236 PH_outspread Outspread 22.4 91 0.002 18.9 2.2 15 50-64 88-102 (104)
83 TIGR00702 uncharacterized doma 21.9 30 0.00064 25.4 -0.0 15 17-31 31-45 (377)
84 PF01041 DegT_DnrJ_EryC1: DegT 21.7 47 0.001 23.6 1.0 16 18-33 87-102 (363)
85 PF12515 CaATP_NAI: Ca2+-ATPas 21.7 1.1E+02 0.0025 16.2 2.2 15 51-65 14-28 (47)
86 KOG2941 Beta-1,4-mannosyltrans 21.5 44 0.00096 25.4 0.8 8 1-8 375-382 (444)
87 PF09365 DUF2461: Conserved hy 21.1 1.4E+02 0.0031 20.2 3.2 48 17-67 93-144 (212)
88 cd01220 PH_CDEP Chondrocyte-de 20.9 1.2E+02 0.0025 18.1 2.4 18 50-67 81-98 (99)
89 PF12612 TFCD_C: Tubulin foldi 20.8 63 0.0014 21.2 1.4 21 2-22 129-150 (193)
90 PF07964 Red1: Rec10 / Red1; 20.8 1.2E+02 0.0026 24.7 3.1 41 30-70 654-694 (706)
91 COG1236 YSH1 Predicted exonucl 20.6 80 0.0017 23.6 2.0 20 5-24 205-226 (427)
92 PHA03269 envelope glycoprotein 20.5 19 0.00041 28.2 -1.3 50 11-61 162-219 (566)
93 PF05678 VQ: VQ motif; InterP 20.5 32 0.00069 16.6 -0.1 13 19-31 4-16 (31)
94 PF11004 Kdo_hydroxy: 3-deoxy- 20.3 70 0.0015 23.1 1.6 36 13-49 137-172 (281)
95 TIGR03675 arCOG00543 arCOG0054 20.3 83 0.0018 24.9 2.1 20 3-22 389-410 (630)
96 PF12646 DUF3783: Domain of un 20.1 1.3E+02 0.0028 16.1 2.3 28 3-31 12-40 (58)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=1.5e-28 Score=194.86 Aligned_cols=72 Identities=43% Similarity=0.696 Sum_probs=68.1
Q ss_pred ChHHHHHHHhh-hcCCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650 1 CLDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR 74 (75)
Q Consensus 1 CLdEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~ 74 (75)
|||||++|+|| ++.+++|+||||+|+|||||+|+|.||++|.+++++. +.+++++||+||++||+++||+++
T Consensus 83 cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~ 155 (1153)
T PLN03210 83 CLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ 155 (1153)
T ss_pred HHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence 99999999999 9999999999999999999999999999999988754 478999999999999999999875
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.87 E-value=6.5e-23 Score=137.34 Aligned_cols=58 Identities=29% Similarity=0.450 Sum_probs=51.1
Q ss_pred ChHHHHHHHhhhcCCCeeeeeeeecccCcceec-cchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650 1 CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQ-TTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR 74 (75)
Q Consensus 1 CLdEL~~I~e~~~~~~~ViPVFY~V~ps~Vr~q-~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~ 74 (75)
|||||++|++| +..||||||+|+|||||+| .|. .+.+++++||.||++||+++||+++
T Consensus 98 CLdEL~~I~e~---~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 98 CLHELALIMES---KKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHHHHHHHc---CCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999998 3479999999999999997 543 1368999999999999999999764
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.04 E-value=5.1e-11 Score=75.22 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=53.1
Q ss_pred ChHHHHHHHhh-hcCC--CeeeeeeeecccCcce-eccchHHHHHHHhHHhhccC--HHHHHHHHHHHH
Q 047650 1 CLDELLKIVEC-KNRK--NQNFPTFNDVEPTIVR-KQTTTFGEAFAKHEEFFKDN--IKKVQNWRQALK 63 (75)
Q Consensus 1 CLdEL~~I~e~-~~~~--~~ViPVFY~V~ps~Vr-~q~g~f~~~f~~~~~~~~~~--~e~v~~W~~AL~ 63 (75)
|+.||..++++ .+.+ ++|+||||+|.|++|+ .+++.|+..|..+......+ .++...|++++.
T Consensus 72 c~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 72 CLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 89999999999 6654 8999999999999999 79999999998877655433 468899999975
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.56 E-value=2.4e-07 Score=57.36 Aligned_cols=66 Identities=32% Similarity=0.507 Sum_probs=54.0
Q ss_pred ChHHHHHHHhh-hc-CCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhc
Q 047650 1 CLDELLKIVEC-KN-RKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 1 CLdEL~~I~e~-~~-~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~ 67 (75)
|..|+..+.++ .. ....||||+|+..|+++..+.+.++..+..+...+..+..+ ..|+.++..+++
T Consensus 72 ~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 72 CLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 78899999998 44 67899999999999999999999999998875445433333 789999988764
No 5
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=82.63 E-value=1.3 Score=31.68 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=21.8
Q ss_pred ChHHHHHHHhh-----hcCCCeeeeeeeeccc
Q 047650 1 CLDELLKIVEC-----KNRKNQNFPTFNDVEP 27 (75)
Q Consensus 1 CLdEL~~I~e~-----~~~~~~ViPVFY~V~p 27 (75)
|=|||.||..- .+.+..++|||--|||
T Consensus 155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred ChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 78899887764 3556778899999999
No 6
>TIGR02453 conserved hypothetical protein TIGR02453. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.
Probab=65.92 E-value=9.4 Score=26.11 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=35.9
Q ss_pred eeeeeee-ecccCcceeccchHH---HHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650 17 QNFPTFN-DVEPTIVRKQTTTFG---EAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR 74 (75)
Q Consensus 17 ~ViPVFY-~V~ps~Vr~q~g~f~---~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~ 74 (75)
.--|.|| +|+|....--.|.|. +.+....+... +....|+.+|.......||.+.
T Consensus 94 ~~~~gyY~hi~p~~~~~g~G~~~p~~~~L~~iR~~I~---~~~~~~~~il~~~~~~~~f~~~ 152 (217)
T TIGR02453 94 LEAPGFYLHLQPDGSFAGGGLWGPEAETLAAVRAAIA---ENPDGWKAAVAALKFLRGFPLS 152 (217)
T ss_pred CCCceEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH---hCHHHHHHHHhChhhhccCCCC
Confidence 4467776 899998877777664 44444444443 3347888888777765666543
No 7
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.54 E-value=6.8 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
++.+.++.|..||..|+
T Consensus 86 ~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 86 ESPEEREEWIHAIQTVA 102 (102)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 46789999999998874
No 8
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.49 E-value=1.4 Score=36.71 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.1
Q ss_pred CeeeeeeeecccCcceec
Q 047650 16 NQNFPTFNDVEPTIVRKQ 33 (75)
Q Consensus 16 ~~ViPVFY~V~ps~Vr~q 33 (75)
+..||+||+-+|+.|-..
T Consensus 34 LRlip~FYGa~p~rlv~k 51 (1201)
T PF12128_consen 34 LRLIPFFYGADPSRLVPK 51 (1201)
T ss_pred HHHHHHhcCCCccccCCc
Confidence 578999999999998443
No 9
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=57.70 E-value=13 Score=22.09 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=16.1
Q ss_pred cCHHHHHHHHHHHHHhhcc
Q 047650 50 DNIKKVQNWRQALKVVANI 68 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va~~ 68 (75)
++.+....|.+||..|-+.
T Consensus 84 ~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 84 ETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 5688899999999998764
No 10
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=57.34 E-value=9.8 Score=28.04 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=36.7
Q ss_pred ChHHHHHHHhh-hcCC----------------Ceeee-eeeecccCccee-----ccchHHHHHHHhHHhhccCHHHHHH
Q 047650 1 CLDELLKIVEC-KNRK----------------NQNFP-TFNDVEPTIVRK-----QTTTFGEAFAKHEEFFKDNIKKVQN 57 (75)
Q Consensus 1 CLdEL~~I~e~-~~~~----------------~~ViP-VFY~V~ps~Vr~-----q~g~f~~~f~~~~~~~~~~~e~v~~ 57 (75)
||+||..|++. -+.| .+.-| |+=...+..+++ |+|.|.+.|..-.+. ...++.+
T Consensus 229 ~lhE~klIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~---g~p~l~~ 305 (338)
T COG0059 229 CLHELKLIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQA---GRPKLEA 305 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhc---CCHHHHH
Confidence 78999998887 4443 45566 333333444443 789999888754432 2456777
Q ss_pred HHHHH
Q 047650 58 WRQAL 62 (75)
Q Consensus 58 W~~AL 62 (75)
||...
T Consensus 306 ~r~~~ 310 (338)
T COG0059 306 LREET 310 (338)
T ss_pred HHHHh
Confidence 76654
No 11
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=57.09 E-value=12 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 047650 50 DNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va~ 67 (75)
++++...+|.+||..+.+
T Consensus 83 ~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 83 RTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 568899999999998864
No 12
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=55.63 E-value=9.9 Score=28.73 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=17.1
Q ss_pred HHHHHhh-hcCCCeeeeeee
Q 047650 5 LLKIVEC-KNRKNQNFPTFN 23 (75)
Q Consensus 5 L~~I~e~-~~~~~~ViPVFY 23 (75)
|.+..|| ..+|.++||||=
T Consensus 222 Lk~VhecVa~GGkvlIPvFA 241 (501)
T KOG1136|consen 222 LKKVHECVARGGKVLIPVFA 241 (501)
T ss_pred HHHHHHHHhcCCeEEEEeee
Confidence 7788999 999999999993
No 13
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=55.55 E-value=15 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
.+.+..++|..||..++
T Consensus 85 ~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 85 ESEEEREEWVDALRKAI 101 (102)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 46788999999998875
No 14
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=55.40 E-value=27 Score=22.49 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.2
Q ss_pred hHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcc
Q 047650 36 TFGEAFAKHEEFFKDNIKKVQNWRQALKVVANI 68 (75)
Q Consensus 36 ~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~ 68 (75)
+-.+-|.+...++..++....+|+.+..++.++
T Consensus 131 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (164)
T TIGR00295 131 TIDEVIKKLEERLGKNHPSIERARKLKEELERL 163 (164)
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 345666677778887888899999999998775
No 15
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=53.30 E-value=15 Score=21.88 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=14.7
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
++.+.++.|..|+.+++
T Consensus 92 ~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 92 KNEEEMTLWVNCICKLC 108 (108)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 57889999999998874
No 16
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=52.98 E-value=18 Score=19.76 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=14.6
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
.+.+....|..||..+.
T Consensus 87 ~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 87 ESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 46889999999999875
No 17
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=52.74 E-value=15 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.497 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++.+.+++|..||..+
T Consensus 81 ~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 81 ETLDDLSQWVNHLITA 96 (96)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5678999999999764
No 18
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=51.82 E-value=13 Score=28.69 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.0
Q ss_pred ChHHHHHHHhh-hcCCCeeeeee
Q 047650 1 CLDELLKIVEC-KNRKNQNFPTF 22 (75)
Q Consensus 1 CLdEL~~I~e~-~~~~~~ViPVF 22 (75)
|-||.|+|++. -+.+..+|||=
T Consensus 169 chdevVkiv~lA~khN~~iiPiG 191 (613)
T KOG1233|consen 169 CHDEVVKIVELAMKHNCAIIPIG 191 (613)
T ss_pred chHHHHHHHHHHhhcCeEEEEeC
Confidence 88999999999 77788899963
No 19
>PF07756 DUF1612: Protein of unknown function (DUF1612); InterPro: IPR011670 This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family []. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts [].
Probab=51.64 E-value=16 Score=23.46 Aligned_cols=20 Identities=15% Similarity=0.494 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHhhcccc
Q 047650 51 NIKKVQNWRQALKVVANISG 70 (75)
Q Consensus 51 ~~e~v~~W~~AL~~va~~~G 70 (75)
+.+++..|+..|.++.+++.
T Consensus 9 E~~RL~eWr~vl~~~~~LPp 28 (128)
T PF07756_consen 9 EDERLDEWRAVLREAEALPP 28 (128)
T ss_pred hHHHHHHHHHHHHHHhhCCH
Confidence 35789999999999998874
No 20
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=51.06 E-value=16 Score=21.90 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.7
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
.+.+..+.|..||..|
T Consensus 91 ~s~~er~~WI~ai~~~ 106 (106)
T cd01238 91 PTEELRKRWIKALKQV 106 (106)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4678899999999875
No 21
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.79 E-value=18 Score=19.97 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=13.2
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++.+...+|..||..+
T Consensus 76 ~s~~e~~~Wi~al~~a 91 (91)
T cd01246 76 NSEEERQRWVDALELA 91 (91)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4678899999999753
No 22
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.23 E-value=13 Score=22.04 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHhhcccc
Q 047650 51 NIKKVQNWRQALKVVANISG 70 (75)
Q Consensus 51 ~~e~v~~W~~AL~~va~~~G 70 (75)
+.+-+.+|+.||..+.+-++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~ 41 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDRED 41 (80)
T ss_pred HHHHHHHHHHHHhhcCChHH
Confidence 35679999999999988654
No 23
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=48.71 E-value=20 Score=20.49 Aligned_cols=16 Identities=25% Similarity=0.763 Sum_probs=13.7
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++++..+.|..||..+
T Consensus 85 ~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 85 ENINEAQRWKEKIQQC 100 (101)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5678899999999875
No 24
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=46.09 E-value=9 Score=29.58 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=37.1
Q ss_pred ChHHHHHHHhh-hcCCCe------------------------eeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHH
Q 047650 1 CLDELLKIVEC-KNRKNQ------------------------NFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKV 55 (75)
Q Consensus 1 CLdEL~~I~e~-~~~~~~------------------------ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v 55 (75)
|++++..|.|. ..+|.. .-|||=++-- + -|+|.|.+.+-.-.+. +..+.
T Consensus 253 ~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~k~~m~p~f~~~~~-~--I~sG~fak~~m~d~~~---~~~~l 326 (487)
T PRK05225 253 IQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQLKEIMAPLFQKHMD-D--IISGEFSSTMMADWAN---DDKKL 326 (487)
T ss_pred HhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHHHHHHHHHHHHHHH-H--hhccHHHHHHHHHHhc---CChHH
Confidence 55677777777 666654 4577743221 1 2588888877654433 35679
Q ss_pred HHHHHHHHH
Q 047650 56 QNWRQALKV 64 (75)
Q Consensus 56 ~~W~~AL~~ 64 (75)
.+||.+++.
T Consensus 327 ~~~r~~~~~ 335 (487)
T PRK05225 327 LTWREETGK 335 (487)
T ss_pred HHHHHHhhc
Confidence 999998764
No 25
>COG1904 UxaC Glucuronate isomerase [Carbohydrate transport and metabolism]
Probab=45.69 E-value=26 Score=26.96 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHHHHHhh-hcCCCeeeeeeeecccCcceec---cc------hHHHHHHHhHHhhccCHHHHHHHHHHHHHhhccc
Q 047650 3 DELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQ---TT------TFGEAFAKHEEFFKDNIKKVQNWRQALKVVANIS 69 (75)
Q Consensus 3 dEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q---~g------~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~ 69 (75)
+.|-+.+++ ...+....-|||-.+|++-+.. .| .||+.-.-..--|.+..+-+++-+..|++++-++
T Consensus 324 ~~L~~LLd~~~~~~~L~k~ily~lnp~~~~~latm~g~fq~~~~~~~~q~G~~WWFnD~~dGM~r~~e~la~~gl~~ 400 (463)
T COG1904 324 EGLKPLLDAFGEDNDLPKTILYLLNPNDNEVLATMAGNFQGEGVSPKLQFGPAWWFNDSKDGMERQREQLASLGLLS 400 (463)
T ss_pred HHHHHHHHhhcccCCCceEEEEecCCchhHHHHHHHhhccccccCcccccCcchhhcCChHHHHHHHHHHHHHHHHH
Confidence 467888888 7777776689999999985432 23 3332211111223345677999999999887655
No 26
>PRK10072 putative transcriptional regulator; Provisional
Probab=43.97 E-value=20 Score=21.56 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=30.8
Q ss_pred hHHHHHHHhh--hcCCCeeeeee-eecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHH
Q 047650 2 LDELLKIVEC--KNRKNQNFPTF-NDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQ 60 (75)
Q Consensus 2 LdEL~~I~e~--~~~~~~ViPVF-Y~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~ 60 (75)
+++|.+=++. ...|..-+-+| |.++|.+++.....-|-.-.+..+..+-+...|.+|..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~eik~LR~~~glTQ~elA~~lGvS~~TVs~WE~ 68 (96)
T PRK10072 7 MFELLSSLEQIVFKDETQKITLTQKTTSFTEFEQLRKGTGLKIDDFARVLGVSVAMVKEWES 68 (96)
T ss_pred HHHHHHHHHHHHHhcCCccceeecccCChHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4555555554 44444333344 67788888765433332222233333445678888864
No 27
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=42.85 E-value=25 Score=18.50 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.9
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
.+.+...+|.+||..+
T Consensus 81 ~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 81 ESEEEREEWIEALQSA 96 (96)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4678899999999753
No 28
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.53 E-value=24 Score=19.55 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHHHHH
Q 047650 50 DNIKKVQNWRQALKV 64 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~ 64 (75)
++.+..++|..||..
T Consensus 79 ~s~~~~~~Wi~al~~ 93 (94)
T cd01250 79 DSEEERDDWISAIQE 93 (94)
T ss_pred CCHHHHHHHHHHHhc
Confidence 467899999999964
No 29
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=42.24 E-value=26 Score=18.63 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
.+.+..+.|..||.++
T Consensus 84 ~~~~~~~~W~~al~~~ 99 (99)
T cd00900 84 DSEEEAQEWVEALQQA 99 (99)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3567899999999764
No 30
>PF15409 PH_8: Pleckstrin homology domain
Probab=42.08 E-value=28 Score=20.77 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHHh
Q 047650 51 NIKKVQNWRQALKVV 65 (75)
Q Consensus 51 ~~e~v~~W~~AL~~v 65 (75)
+.+..+.|..||..+
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 678899999999875
No 31
>PF03429 MSP1b: Major surface protein 1B; InterPro: IPR005091 The major surface protein (MSP1) of the cattle pathogen Anaplasma is a heterodimer comprised of MSP1a and MSP1b. This family is the MSP1b chain. The MSP1 proteins are putative adhesins for bovine erythrocytes.
Probab=41.99 E-value=26 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=33.8
Q ss_pred eeeeeeecccCcceeccchH-HHHHHHhHHhhccCHHHHHHHHHHHHHhhcc
Q 047650 18 NFPTFNDVEPTIVRKQTTTF-GEAFAKHEEFFKDNIKKVQNWRQALKVVANI 68 (75)
Q Consensus 18 ViPVFY~V~ps~Vr~q~g~f-~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~ 68 (75)
..-+-|+|+ .+.+..|.| |+.+.+..++. .+--++|-.||.+|-++
T Consensus 207 LveasyGvs--yane~MGK~AGKGLEKCknKL---~~A~~KW~~A~~EieaL 253 (726)
T PF03429_consen 207 LVEASYGVS--YANETMGKYAGKGLEKCKNKL---EAACQKWHDALQEIEAL 253 (726)
T ss_pred hHHhhhhhh--hhhchhhhhhcccHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444556665 455567877 68888887776 46789999999998765
No 32
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.43 E-value=27 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++.+....|..||.+|
T Consensus 83 ~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 83 EAPVEATDWLNALEKQ 98 (98)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4678899999999875
No 33
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.32 E-value=32 Score=20.87 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 047650 50 DNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va~ 67 (75)
++.+..+.|..||..+..
T Consensus 97 ~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 97 ANDEEMDEWIKSIKASIS 114 (125)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 568899999999988763
No 34
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.08 E-value=31 Score=21.39 Aligned_cols=19 Identities=32% Similarity=0.677 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHHHHhhcc
Q 047650 50 DNIKKVQNWRQALKVVANI 68 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va~~ 68 (75)
.+.+.+++|-.||..+|..
T Consensus 95 ~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 95 SSLKELQSWIERINVVAAA 113 (117)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3678999999999999864
No 35
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=39.47 E-value=26 Score=19.19 Aligned_cols=17 Identities=24% Similarity=0.691 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcccccc
Q 047650 56 QNWRQALKVVANISGWE 72 (75)
Q Consensus 56 ~~W~~AL~~va~~~G~~ 72 (75)
++||+++.++++++.-.
T Consensus 21 ~~~r~~l~~l~~~p~~~ 37 (57)
T PF09838_consen 21 ERWRRMLRQLAQLPDRQ 37 (57)
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 57999999999887543
No 36
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=38.45 E-value=26 Score=20.83 Aligned_cols=15 Identities=33% Similarity=0.858 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhccccc
Q 047650 53 KKVQNWRQALKVVANISGW 71 (75)
Q Consensus 53 e~v~~W~~AL~~va~~~G~ 71 (75)
+.|.+||+| -.++||
T Consensus 69 ~~vKeWRa~----nG~pgF 83 (85)
T PF01320_consen 69 KEVKEWRAS----NGKPGF 83 (85)
T ss_dssp HHHHHHHHH----TT---S
T ss_pred HHHHHHHHH----cCCCcc
Confidence 568999998 666665
No 37
>PHA03068 DNA-binding phosphoprotein; Provisional
Probab=36.87 E-value=31 Score=24.69 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.8
Q ss_pred hHHHHHHHhh--hcCCCeeee-eeee
Q 047650 2 LDELLKIVEC--KNRKNQNFP-TFND 24 (75)
Q Consensus 2 LdEL~~I~e~--~~~~~~ViP-VFY~ 24 (75)
++||...... +.-+.++.| |||.
T Consensus 175 ~~ElE~LskRD~QMak~il~PivfYr 200 (270)
T PHA03068 175 SEELESLSKRDPQMAKAILVPIVFYR 200 (270)
T ss_pred HHHHHhhhhhcHhhhheeeeeEEEEe
Confidence 4677776666 344568889 7886
No 38
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=36.78 E-value=50 Score=22.21 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.5
Q ss_pred hHHHHHHHhh-h-cCCCeeeeeeeecccCcce-eccchHHH
Q 047650 2 LDELLKIVEC-K-NRKNQNFPTFNDVEPTIVR-KQTTTFGE 39 (75)
Q Consensus 2 LdEL~~I~e~-~-~~~~~ViPVFY~V~ps~Vr-~q~g~f~~ 39 (75)
|.+|..+++. . ..+..|-+||--|||..=- .+-..|+.
T Consensus 87 l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 87 LAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred HHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 4566677776 4 6678899999999997432 22344544
No 39
>PHA00407 phage lambda Rz1-like protein
Probab=36.65 E-value=25 Score=20.80 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHH-----Hhhccccccc
Q 047650 51 NIKKVQNWRQALK-----VVANISGWEL 73 (75)
Q Consensus 51 ~~e~v~~W~~AL~-----~va~~~G~~~ 73 (75)
...+..+||.||. -|+.++|..+
T Consensus 24 tkktl~rwkaaLIGlllicv~tISGCaS 51 (84)
T PHA00407 24 TKKTLRRWKAALIGLLLICVATISGCAS 51 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567999999974 5677777543
No 40
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=35.54 E-value=44 Score=20.33 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=14.2
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
.+.+.+..|..+++.+|
T Consensus 102 ~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 102 SDEEEMNEWIDAINYAA 118 (119)
T ss_dssp SSHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhhhc
Confidence 47899999999999886
No 41
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=33.78 E-value=38 Score=26.88 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.0
Q ss_pred HHHHHHHhh--hcCCCeeeeee
Q 047650 3 DELLKIVEC--KNRKNQNFPTF 22 (75)
Q Consensus 3 dEL~~I~e~--~~~~~~ViPVF 22 (75)
.||++++.. +.+|.+.||+|
T Consensus 395 ~~L~~vi~~t~~rGGKvLIP~f 416 (637)
T COG1782 395 KELIKVINDTLKRGGKVLIPVF 416 (637)
T ss_pred HHHHHHHHHHHhcCCeEEEEee
Confidence 478888887 88899999999
No 42
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=33.46 E-value=1e+02 Score=18.04 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred hHHHHHHHhHHhh-c--cCHHHHHHHHHHHHHhhcc
Q 047650 36 TFGEAFAKHEEFF-K--DNIKKVQNWRQALKVVANI 68 (75)
Q Consensus 36 ~f~~~f~~~~~~~-~--~~~e~v~~W~~AL~~va~~ 68 (75)
.|+++|...-... + .+.+..+.|..++..+++.
T Consensus 104 ~~~~~l~~~l~~~~~~~~~~~~~~aW~~~~~~i~~~ 139 (140)
T cd01040 104 LFGEALLEVLAEVLGDDFTPEVKAAWDKLLDVIADA 139 (140)
T ss_pred HHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHh
Confidence 4555555543322 2 2678899999999988763
No 43
>PRK05422 smpB SsrA-binding protein; Validated
Probab=33.24 E-value=44 Score=21.90 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHHHHHHhh-hcCCCeeeeeeeecccCcceeccc
Q 047650 3 DELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTT 35 (75)
Q Consensus 3 dEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g 35 (75)
.|+.+|... +..|.+++|+--...-+-|+-..|
T Consensus 86 ~EI~kl~~~~~~kG~TiVPl~ly~k~g~iKveIa 119 (148)
T PRK05422 86 KEIDKLIGKVERKGYTLVPLKLYFKNGRAKVEIG 119 (148)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhCcCCEEEEEEE
Confidence 588899998 899999999543336666766544
No 44
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=32.96 E-value=34 Score=19.46 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=15.2
Q ss_pred ChHHHHHHHhhhcCCCeeeeeeeecccCcc
Q 047650 1 CLDELLKIVECKNRKNQNFPTFNDVEPTIV 30 (75)
Q Consensus 1 CLdEL~~I~e~~~~~~~ViPVFY~V~ps~V 30 (75)
|..|+....+ .+..|+||. +++.++
T Consensus 67 ~~~E~~~a~~---~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 67 CRFELGAAWK---RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp HHHHHHHHHC---TSESEEEEE--CSGGGS
T ss_pred HHHHHHHHHH---CCCEEEEEE--ECCcCC
Confidence 5566555533 456899998 444443
No 45
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=31.98 E-value=1.2e+02 Score=22.37 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHhhc
Q 047650 51 NIKKVQNWRQALKVVAN 67 (75)
Q Consensus 51 ~~e~v~~W~~AL~~va~ 67 (75)
++.-++.|++||..++.
T Consensus 303 ~pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 303 SPNYLQGWRNALAIAAG 319 (322)
T ss_pred CHhHHHHHHHHHHHhhC
Confidence 35668999999988764
No 46
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.71 E-value=42 Score=20.99 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++.+..+.|..||+++
T Consensus 107 Dt~eer~~W~~ain~~ 122 (122)
T cd01263 107 DTKEERQTWLSLLNST 122 (122)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 4678999999999864
No 47
>TIGR00086 smpB SsrA-binding protein. This model describes the SsrA-binding protein, also called tmRNA binding protein, small protein B, and SmpB. The small, stable RNA SsrA (also called tmRNA or 10Sa RNA) recognizes stalled ribosomes such as occur during translation from message that lacks a stop codon. It becomes charged with Ala like a tRNA, then acts as mRNA to resume translation started with the defective mRNA. The short C-terminal peptide tag added by the SsrA system marks the abortively translated protein for degradation. SmpB binds SsrA after its aminoacylation but before the coupling of the Ala to the nascent polypeptide chain and is an essential part of the SsrA peptide tagging system. SmpB has been associated with the survival of bacterial pathogens in conditions of stress. It is universal in the first 100 sequenced bacterial genomes.
Probab=31.08 E-value=49 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=22.9
Q ss_pred HHHHHHHhh-hcCCCeeeeeeeecc-cCcceeccc
Q 047650 3 DELLKIVEC-KNRKNQNFPTFNDVE-PTIVRKQTT 35 (75)
Q Consensus 3 dEL~~I~e~-~~~~~~ViPVFY~V~-ps~Vr~q~g 35 (75)
.|+.++... +..|.+++|.=-..+ -+-++-+.|
T Consensus 82 ~EI~kL~~~~~~kG~TiVPl~ly~~~~g~~KveIa 116 (144)
T TIGR00086 82 KEIDKLQGKVKEKGLTLVPLKLYFKNKGKVKVEIA 116 (144)
T ss_pred HHHHHHHHHHhcCCeEEEeeEEEEecCCEEEEEEE
Confidence 488899988 889999999432224 355665543
No 48
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=30.92 E-value=56 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccc
Q 047650 37 FGEAFAKHEEFFKDNIKKVQNWRQALKVVANISG 70 (75)
Q Consensus 37 f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G 70 (75)
+++-|.+..-...-..|--.+|..||.+++...+
T Consensus 312 iaEY~RDmGy~v~lmADSTSRWAEAlREisgRle 345 (588)
T COG1155 312 IAEYYRDMGYDVALMADSTSRWAEALREISGRLE 345 (588)
T ss_pred HHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccc
Confidence 4566666554433345778999999999998765
No 49
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=30.73 E-value=23 Score=23.52 Aligned_cols=7 Identities=43% Similarity=0.862 Sum_probs=6.5
Q ss_pred eeeeecc
Q 047650 20 PTFNDVE 26 (75)
Q Consensus 20 PVFY~V~ 26 (75)
||||+||
T Consensus 22 PVffKvD 28 (161)
T PF15043_consen 22 PVFFKVD 28 (161)
T ss_pred cEEEEec
Confidence 8999998
No 50
>KOG4116 consensus Ubiquinol cytochrome c reductase, subunit QCR8 [Energy production and conversion]
Probab=30.45 E-value=56 Score=19.72 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=25.0
Q ss_pred eeeecccCcceeccchHHHHHHHhHHhhc
Q 047650 21 TFNDVEPTIVRKQTTTFGEAFAKHEEFFK 49 (75)
Q Consensus 21 VFY~V~ps~Vr~q~g~f~~~f~~~~~~~~ 49 (75)
|=|.++|-+=|-..|.|.++|...-.++.
T Consensus 22 isYaLSPfeQra~~g~F~~~~~n~fRr~~ 50 (90)
T KOG4116|consen 22 ISYALSPFEQRAYAGFFDKAFPNMFRRFR 50 (90)
T ss_pred EEEecCchhhccccchhhhhhHHHHHHhh
Confidence 56999999999999999999988777765
No 51
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins. This CD represents the C-terminal Ras-associating (RA) domain of three closely related guanine-nucleotide exchange factors (GEF's), Ral guanine nucleotide dissociation stimulator (RalGDS), RalGDS-like (RGL), and RalGDS-like factor (RLF). The RalGDS proteins are downstream effectors of the Ras-related protein Ral, providing a mechanism for Ral activation by extracellular signals. The RA domain is structurally similar to ubiquitin and exists in a number of other signalling proteins including AF6, rasfadin, SNX27, CYR1, and STE50.
Probab=30.15 E-value=37 Score=20.39 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.2
Q ss_pred CCCeeee----eeeecccC
Q 047650 14 RKNQNFP----TFNDVEPT 28 (75)
Q Consensus 14 ~~~~ViP----VFY~V~ps 28 (75)
.+-.+|| |||.+.|+
T Consensus 59 d~El~iP~~aNvfYAm~~~ 77 (87)
T cd00153 59 DRELVIPDNANVFYAMNPA 77 (87)
T ss_pred CceEeccCCCceEEEecCC
Confidence 4567888 99999986
No 52
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=29.88 E-value=28 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.1
Q ss_pred hcCCCeeeeeeeecccCcceec--cchHHHH
Q 047650 12 KNRKNQNFPTFNDVEPTIVRKQ--TTTFGEA 40 (75)
Q Consensus 12 ~~~~~~ViPVFY~V~ps~Vr~q--~g~f~~~ 40 (75)
++++|+||| |.=|++++|+. .|..|.-
T Consensus 83 k~GSQviiP--yR~d~~~~r~lkvmGdLGQv 111 (391)
T KOG2865|consen 83 KMGSQVIIP--YRGDEYDPRHLKVMGDLGQV 111 (391)
T ss_pred hcCCeEEEe--ccCCccchhheeecccccce
Confidence 678899999 89999999987 5777643
No 53
>PF04661 Pox_I3: Poxvirus I3 ssDNA-binding protein; InterPro: IPR006754 The 34kDa protein encoded by the I3 gene of vaccinia virus is expressed at early and intermediate times post-infection and is phosphorylated on serine residues. I3 protein demonstrates a striking affinity for single-stranded, but not for double-stranded, DNA which suggests a role in DNA replication and/or repair. Electrophoretic mobility shift assays indicate that numerous I3 molecules can bind to a template, reflecting the stoichiometric interaction of I3 with DNA. Sequence analysis reveals that a pattern of aromatic and charged amino acids common to many replicative single-stranded DNA binding proteins (SSBs) is conserved in I3 [].; GO: 0003697 single-stranded DNA binding
Probab=29.39 E-value=44 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=16.0
Q ss_pred hHHHHHHHhh--hcCCCeeee-eeee
Q 047650 2 LDELLKIVEC--KNRKNQNFP-TFND 24 (75)
Q Consensus 2 LdEL~~I~e~--~~~~~~ViP-VFY~ 24 (75)
.+||...... +.-..++.| |||.
T Consensus 165 ~~ElE~LakRd~Qmak~il~PivfYr 190 (262)
T PF04661_consen 165 DRELENLAKRDKQMAKIILVPIVFYR 190 (262)
T ss_pred HHHHHhhhhhhhhHHhheeeeEEEEe
Confidence 3567776666 345778999 7886
No 54
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=28.69 E-value=61 Score=18.91 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.1
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
.+.+.++.|..||...
T Consensus 82 ~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 82 LSDKEMIDWLYALNPL 97 (100)
T ss_pred CCHHHHHHHHHHhhhh
Confidence 4678999999999753
No 55
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=28.34 E-value=36 Score=24.53 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.4
Q ss_pred CeeeeeeeecccCcceeccc
Q 047650 16 NQNFPTFNDVEPTIVRKQTT 35 (75)
Q Consensus 16 ~~ViPVFY~V~ps~Vr~q~g 35 (75)
..+-|+||+.+|..+....|
T Consensus 143 v~~tP~F~Ga~P~~~~~~~G 162 (313)
T PF12006_consen 143 VSITPTFFGAEPAEVDEYKG 162 (313)
T ss_pred EEECceeeCCCCCcccccCC
Confidence 46789999999999998777
No 56
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.80 E-value=69 Score=18.57 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++++..++|..||...
T Consensus 78 ~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 78 SSDKQMNYWLQALQSK 93 (95)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 4678899999999764
No 57
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=27.75 E-value=63 Score=19.39 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++++..+.|-.||.++
T Consensus 86 ese~E~~~Wi~~i~~~ 101 (101)
T cd01257 86 ENEAEQDSWYQALLEL 101 (101)
T ss_pred CCHHHHHHHHHHHhhC
Confidence 5678899999999764
No 58
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=26.94 E-value=27 Score=22.55 Aligned_cols=9 Identities=22% Similarity=0.708 Sum_probs=7.1
Q ss_pred eeeeeeeec
Q 047650 17 QNFPTFNDV 25 (75)
Q Consensus 17 ~ViPVFY~V 25 (75)
.=|||||+-
T Consensus 115 RdipVfy~~ 123 (144)
T PF10657_consen 115 RDIPVFYNS 123 (144)
T ss_pred ecCceEEcc
Confidence 458999974
No 59
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=26.82 E-value=66 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=26.0
Q ss_pred hHHHHHHHhh-hcCCCeeeeeeeecccC-cceeccchHHHHH
Q 047650 2 LDELLKIVEC-KNRKNQNFPTFNDVEPT-IVRKQTTTFGEAF 41 (75)
Q Consensus 2 LdEL~~I~e~-~~~~~~ViPVFY~V~ps-~Vr~q~g~f~~~f 41 (75)
|..|.++.+. ...+..|-+||--+||. |--..-..|.+.|
T Consensus 72 l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~ 113 (174)
T PF02630_consen 72 LANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKF 113 (174)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCH
T ss_pred HHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhc
Confidence 4566777776 55577899999999996 4333334455554
No 60
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=26.81 E-value=45 Score=20.47 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=11.7
Q ss_pred hHHHHHHHhh-hcC-CCeeee
Q 047650 2 LDELLKIVEC-KNR-KNQNFP 20 (75)
Q Consensus 2 LdEL~~I~e~-~~~-~~~ViP 20 (75)
+|||+.|++| ++. ....+|
T Consensus 22 ideLa~i~~~p~e~ftlE~i~ 42 (108)
T PF08921_consen 22 IDELAEICGCPRENFTLEWIN 42 (108)
T ss_dssp HHHHHHHHT--GGG-EEEE--
T ss_pred HHHHHHHHCCCcceEEEEEec
Confidence 5899999999 443 455555
No 61
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=26.18 E-value=76 Score=24.61 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHhh-hcCCCeeeeeeeecccCc------------ceeccchHHHHHHHhHHhh
Q 047650 6 LKIVEC-KNRKNQNFPTFNDVEPTI------------VRKQTTTFGEAFAKHEEFF 48 (75)
Q Consensus 6 ~~I~e~-~~~~~~ViPVFY~V~ps~------------Vr~q~g~f~~~f~~~~~~~ 48 (75)
.+|-+. +..++-..|+=|.|=||+ .|..-.+||+.|.+.+..+
T Consensus 20 ~eI~~ia~~~gLD~Yp~q~Evi~~eqM~da~ss~GMP~rY~HWSfGKkf~k~k~~Y 75 (495)
T COG2719 20 EEIERIAKEYGLDTYPVQYEVITSEQMMDAYSSVGMPTRYPHWSFGKKFEKTKQLY 75 (495)
T ss_pred HHHHHHHHHhCCCCCCceEEEecHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHH
Confidence 455556 677899999999999998 3455579999999887655
No 62
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=26.12 E-value=77 Score=15.88 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=12.1
Q ss_pred HHHHHHHhh-hcCCCeeeee
Q 047650 3 DELLKIVEC-KNRKNQNFPT 21 (75)
Q Consensus 3 dEL~~I~e~-~~~~~~ViPV 21 (75)
++|.++++. +. ..++||
T Consensus 21 ~~L~~~i~~~~p--~~vilV 38 (43)
T PF07521_consen 21 EELLEFIEQLNP--RKVILV 38 (43)
T ss_dssp HHHHHHHHHHCS--SEEEEE
T ss_pred HHHHHHHHhcCC--CEEEEe
Confidence 578888886 44 677776
No 63
>smart00692 DM3 Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK.
Probab=26.06 E-value=61 Score=17.11 Aligned_cols=16 Identities=19% Similarity=0.665 Sum_probs=12.4
Q ss_pred hccCHHHHHHHHHHHH
Q 047650 48 FKDNIKKVQNWRQALK 63 (75)
Q Consensus 48 ~~~~~e~v~~W~~AL~ 63 (75)
|..+.+..++|..|+.
T Consensus 4 FP~d~~~~~~W~~~~~ 19 (59)
T smart00692 4 FPKDPELLKKWEHNLR 19 (59)
T ss_pred CccCHHHHHHHHHHhC
Confidence 3456788999999984
No 64
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=26.01 E-value=41 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=11.7
Q ss_pred hcCCCeeeeeeeecc
Q 047650 12 KNRKNQNFPTFNDVE 26 (75)
Q Consensus 12 ~~~~~~ViPVFY~V~ 26 (75)
..++-+|+|||++=+
T Consensus 112 as~SEIVvPi~~~g~ 126 (163)
T COG1956 112 ASNSEIVVPIFKDGK 126 (163)
T ss_pred ccCceEEEEEEECCE
Confidence 566789999998733
No 65
>KOG2540 consensus Cytochrome oxidase assembly factor COX11 [Posttranslational modification, protein turnover, chaperones]
Probab=25.97 E-value=33 Score=24.30 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=14.5
Q ss_pred CCeeeeeeeecccCccee
Q 047650 15 KNQNFPTFNDVEPTIVRK 32 (75)
Q Consensus 15 ~~~ViPVFY~V~ps~Vr~ 32 (75)
-++=+|||+-+||.-...
T Consensus 213 E~vDmPVFFyIDPefa~D 230 (269)
T KOG2540|consen 213 EQVDMPVFFYIDPEFATD 230 (269)
T ss_pred cccCcceEEEeCcccccC
Confidence 467899999999986643
No 66
>PRK09857 putative transposase; Provisional
Probab=25.64 E-value=61 Score=23.02 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=14.3
Q ss_pred HHHHhh-hcCC---C-eeee-eeeec--ccCcc
Q 047650 6 LKIVEC-KNRK---N-QNFP-TFNDV--EPTIV 30 (75)
Q Consensus 6 ~~I~e~-~~~~---~-~ViP-VFY~V--~ps~V 30 (75)
+.|++. .+.| + .|+| |||+= .|..+
T Consensus 100 ~~iw~~~l~~~~~~LP~ViPiV~YhG~~~~w~~ 132 (292)
T PRK09857 100 IAAMQNHLDAGYKTLPMVVPLLFYHGIESPYPY 132 (292)
T ss_pred HHHHHHHHHcCCCCCCceEEEEEEcCCCCCCCC
Confidence 455565 2222 3 4899 78973 35665
No 67
>PRK02925 glucuronate isomerase; Reviewed
Probab=25.21 E-value=1.4e+02 Score=23.14 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHHHHhh-hcCCCeeeeeeeecccCcceeccchHHHHHHHh----------HHhhccCHHHHHHHHHHHHHhhccc
Q 047650 4 ELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKH----------EEFFKDNIKKVQNWRQALKVVANIS 69 (75)
Q Consensus 4 EL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~----------~~~~~~~~e~v~~W~~AL~~va~~~ 69 (75)
.|...++. ..++..---|.|.++|++=. ...+..-.|..- .--|.+..+-+.+-.+||++++-++
T Consensus 327 ~L~~lL~~l~~~~~LpktIly~Lnp~~n~-~lat~~g~F~~~~~~gkvq~Ga~WWFnD~~~GM~~ql~~la~~glls 402 (466)
T PRK02925 327 ALSPLLDALGNENDLPKTILYTLNPTDNE-ELATMAGNFQGLGIPGKMQFGAGWWFNDQKDGMERQMEQLAETGLLS 402 (466)
T ss_pred HHHHHHHhcccCCCCCeEEEEecCcccHH-HHHHHHcccCCCCCCCccccccchhhccCHHHHHHHHHHHHhccchh
Confidence 45556665 55555544599999999944 222222222111 0113356788999999999887554
No 68
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.05 E-value=77 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=16.8
Q ss_pred hHHHHHHHhh-hcCCCeeee-eeeecc
Q 047650 2 LDELLKIVEC-KNRKNQNFP-TFNDVE 26 (75)
Q Consensus 2 LdEL~~I~e~-~~~~~~ViP-VFY~V~ 26 (75)
|+||..++.. +.+...-+| |+|+.+
T Consensus 67 l~El~~~~~~~~l~~~~~~Piil~~~~ 93 (133)
T PF03641_consen 67 LDELFEALTLMQLGRHNKVPIILLNID 93 (133)
T ss_dssp HHHHHHHHHHHHTTSSTS-EEEEEECG
T ss_pred HHHHHHHHHHHhhccccCCCEEEeCCc
Confidence 7899888887 666666667 445554
No 69
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.82 E-value=72 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.6
Q ss_pred cCHHHHHHHHHHHHH
Q 047650 50 DNIKKVQNWRQALKV 64 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~ 64 (75)
.+.+.+..|-.||..
T Consensus 89 ~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 89 PDEEEMSSWVRALKS 103 (104)
T ss_pred CCHHHHHHHHHHHhc
Confidence 468899999999964
No 70
>PF07386 DUF1499: Protein of unknown function (DUF1499); InterPro: IPR010865 This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.
Probab=24.56 E-value=46 Score=20.29 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.1
Q ss_pred ccCHHHHHHHHHHHH
Q 047650 49 KDNIKKVQNWRQALK 63 (75)
Q Consensus 49 ~~~~e~v~~W~~AL~ 63 (75)
+.|..++++|+.+|+
T Consensus 104 G~Nr~Ri~~~~~~L~ 118 (118)
T PF07386_consen 104 GVNRRRIEALRAALE 118 (118)
T ss_pred chhHHHHHHHHHHhC
Confidence 346799999999984
No 71
>PF05485 THAP: THAP domain; InterPro: IPR006612 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. The THAP domain is an ~90-residue domain restricted to animals, which is shared between the THAP family of cellular DNA-binding proteins, and transposases from mobile genomic parasites. The defined THAP domain includes: a C2CH signature (consensus: C-x(2,4)-C-x(35,50)-C-x(2)-H); three additional key residues that are strictly conserved in all THAP domains that have been found to date (THAP1 amino acids P26, W36, F58); a C-terminal AVPTIF box; and several other conserved amino acid positions with distinct physicochemical properties (e.g. hydrophobic and polar). The THAP domain can be found in one or more copies and can be associated with other domains, such as the C2H2-type zinc finger. The THAP domain is supposed to be a DNA-binding domain (DBD) [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding; PDB: 3KDE_C 2D8R_A 2JM3_A 2KO0_A 2JTG_A 2L1G_A.
Probab=24.19 E-value=68 Score=17.75 Aligned_cols=19 Identities=11% Similarity=0.164 Sum_probs=13.6
Q ss_pred ccCHHHHHHHHHHHHHhhc
Q 047650 49 KDNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 49 ~~~~e~v~~W~~AL~~va~ 67 (75)
..+.+..++|..|+.....
T Consensus 24 P~d~~~~~~W~~~~~~~~~ 42 (84)
T PF05485_consen 24 PKDPERRKKWLKACGREDW 42 (84)
T ss_dssp -SSHHHHHHHHHHHTSTCG
T ss_pred CCCHHHHHHHHHHhccccc
Confidence 4467888999999865443
No 72
>PF15411 PH_10: Pleckstrin homology domain
Probab=24.07 E-value=46 Score=20.60 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHH
Q 047650 51 NIKKVQNWRQAL 62 (75)
Q Consensus 51 ~~e~v~~W~~AL 62 (75)
+++....|+.||
T Consensus 105 nee~l~~W~~~L 116 (116)
T PF15411_consen 105 NEEQLEQWRSAL 116 (116)
T ss_pred CHHHHHHHHhhC
Confidence 688999999986
No 73
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=23.88 E-value=84 Score=18.19 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=12.4
Q ss_pred cCHHHHHHHHHHHHH
Q 047650 50 DNIKKVQNWRQALKV 64 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~ 64 (75)
++++..++|.+||..
T Consensus 76 ~s~~e~~~Wi~al~~ 90 (91)
T cd01247 76 ENSQSRLLWMDSVVR 90 (91)
T ss_pred CCHHHHHHHHHHHhh
Confidence 467889999999964
No 74
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.72 E-value=1.6e+02 Score=23.75 Aligned_cols=63 Identities=13% Similarity=0.260 Sum_probs=44.6
Q ss_pred hcCCCeeeeeeeecccCcceec-cchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650 12 KNRKNQNFPTFNDVEPTIVRKQ-TTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR 74 (75)
Q Consensus 12 ~~~~~~ViPVFY~V~ps~Vr~q-~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~ 74 (75)
..+|....|-|..+|++|+-.. ...|...+..+.+....-.++|...+.++...+..-|..+.
T Consensus 139 ~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 139 ELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 5566789999999999999743 34565555555544332356788888999888888776653
No 75
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.55 E-value=51 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.7
Q ss_pred hHHHHHHHhh-hcCCCeeeeeeeecccCcceec
Q 047650 2 LDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQ 33 (75)
Q Consensus 2 LdEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q 33 (75)
+.+|.++.+. +.-+ +| |.+||+-||..
T Consensus 241 ~~~~~~v~~~L~~~g---~~--~~id~~lvRGL 268 (429)
T COG0124 241 LEHLEELLALLDALG---IS--YEIDPSLVRGL 268 (429)
T ss_pred HHHHHHHHHHHHHcC---CC--EEEccceecch
Confidence 4566666666 6555 66 99999999863
No 76
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=23.43 E-value=28 Score=20.80 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=10.0
Q ss_pred eee-ecccCccee
Q 047650 21 TFN-DVEPTIVRK 32 (75)
Q Consensus 21 VFY-~V~ps~Vr~ 32 (75)
||| +|+|.||..
T Consensus 60 v~Y~~V~~edv~~ 72 (92)
T cd03063 60 VAYGPVTPADVAS 72 (92)
T ss_pred EEEEeCCHHHHHH
Confidence 999 599999864
No 77
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=23.27 E-value=83 Score=23.02 Aligned_cols=50 Identities=20% Similarity=0.076 Sum_probs=32.7
Q ss_pred CCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhccc
Q 047650 15 KNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANIS 69 (75)
Q Consensus 15 ~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~ 69 (75)
.+-|-|..|+++.-.|-...-.|.....+.. +++-..++..|+..+++++
T Consensus 184 ~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~-----~e~~~~~~~~a~~~~~~ls 233 (323)
T PTZ00240 184 KLNISPFYYQVEVLSVWDRGVLFTREDLSMT-----EDVVEKMLMEGLSNVAAMS 233 (323)
T ss_pred HcCCCeEEEEEEEEEEEeCCeecCHHHcCCC-----HHHHHHHHHHHHHHHHHHH
Confidence 3567888899888888765445654433221 2344667888888888765
No 78
>PF04333 VacJ: VacJ like lipoprotein; InterPro: IPR007428 Lipoproteins in Gram-negative microbes also act as structural stabilisers, forming non-covalent bonds with peptidoglycan on the outer membrane of the cell []. Following completion of the genomes of several Gram-negative prokaryotes, a putative lipoprotein, VacJ, has been discovered in the raw sequence open reading frames. Biochemical analysis of the Shigella flexneri VacJ protein revealed it to be essential for virulence, promoting spread of bacterial cells through the intercellular space of tissues []. Upon expression in the facultative intracellular microbe, host cells form membranous protrusions containing the pathogen, allowing it to move to the cytoplasm of the next target cell. As homologues of this lipoprotein have largely been found in obligate or facultative intracellular microbial genomes, it appears to be specific for that particular lifestyle []. ; GO: 0016020 membrane
Probab=22.96 E-value=48 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCeeeeeeeecccCcceeccchHHHHHHH
Q 047650 14 RKNQNFPTFNDVEPTIVRKQTTTFGEAFAK 43 (75)
Q Consensus 14 ~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~ 43 (75)
+.-+|+|++ -||.+|.-.|..++.+..
T Consensus 118 GpYlvLP~l---GPst~RD~~G~~~d~~~~ 144 (200)
T PF04333_consen 118 GPYLVLPFL---GPSTLRDAVGLVVDSFLN 144 (200)
T ss_pred CCeEEEecC---CCCchhhccchhhhhccc
Confidence 345899995 899999999998888863
No 79
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=22.87 E-value=1.5e+02 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHhhhcCCCeeeeeeeecccC
Q 047650 4 ELLKIVECKNRKNQNFPTFNDVEPT 28 (75)
Q Consensus 4 EL~~I~e~~~~~~~ViPVFY~V~ps 28 (75)
|+..|.. .|+.++|||-.-.++
T Consensus 57 e~~~i~~---~Gl~~~pIyq~~~~~ 78 (212)
T cd06418 57 ELETITA---AGLKVFPIYQGGGYS 78 (212)
T ss_pred HHHHHHH---CCCEEEEEEECCCcc
Confidence 4444444 588888888655443
No 80
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=22.64 E-value=98 Score=18.59 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHHHHh
Q 047650 50 DNIKKVQNWRQALKVV 65 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~v 65 (75)
++.+....|-.||.++
T Consensus 97 ~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 97 ETREDRYDWIEALQEA 112 (112)
T ss_dssp SSHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4678899999999864
No 81
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.62 E-value=98 Score=19.11 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=14.0
Q ss_pred cCHHHHHHHHHHHHHhh
Q 047650 50 DNIKKVQNWRQALKVVA 66 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va 66 (75)
++++.-.+|.+|+.-++
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 46788999999998765
No 82
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.42 E-value=91 Score=18.85 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.9
Q ss_pred cCHHHHHHHHHHHHH
Q 047650 50 DNIKKVQNWRQALKV 64 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~ 64 (75)
++++..+.|.+||+.
T Consensus 88 ete~E~~~Wi~~l~~ 102 (104)
T cd01236 88 ETKEEISWWLNMLMV 102 (104)
T ss_pred CCHHHHHHHHHHHHh
Confidence 578899999999974
No 83
>TIGR00702 uncharacterized domain. This uncharacterized domain comprises the whole of a protein in Methanococcus jannaschii and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=21.90 E-value=30 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=12.5
Q ss_pred eeeeeeeecccCcce
Q 047650 17 QNFPTFNDVEPTIVR 31 (75)
Q Consensus 17 ~ViPVFY~V~ps~Vr 31 (75)
+=||||+-|.|.+..
T Consensus 31 lgipv~~av~~~~~~ 45 (377)
T TIGR00702 31 LGIPVVWAVRPRDKD 45 (377)
T ss_pred CCCCeEEEECCcccc
Confidence 358999999998875
No 84
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=21.70 E-value=47 Score=23.64 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=10.4
Q ss_pred eeeeeeecccCcceec
Q 047650 18 NFPTFNDVEPTIVRKQ 33 (75)
Q Consensus 18 ViPVFY~V~ps~Vr~q 33 (75)
..|||++|+|....--
T Consensus 87 ~~pv~~Di~~~~~~id 102 (363)
T PF01041_consen 87 AEPVFVDIDPETLNID 102 (363)
T ss_dssp -EEEEE-BETTTSSB-
T ss_pred cEEEEEeccCCcCCcC
Confidence 4699999998876543
No 85
>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []. This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding
Probab=21.65 E-value=1.1e+02 Score=16.20 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHh
Q 047650 51 NIKKVQNWRQALKVV 65 (75)
Q Consensus 51 ~~e~v~~W~~AL~~v 65 (75)
..|..++||.|..-|
T Consensus 14 s~e~l~rWR~a~~lv 28 (47)
T PF12515_consen 14 SEEALRRWRQAVGLV 28 (47)
T ss_pred CHHHHHHHHHHhHHh
Confidence 468899999997544
No 86
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=44 Score=25.39 Aligned_cols=8 Identities=75% Similarity=1.273 Sum_probs=6.7
Q ss_pred ChHHHHHH
Q 047650 1 CLDELLKI 8 (75)
Q Consensus 1 CLdEL~~I 8 (75)
||||||+=
T Consensus 375 cl~ELVkh 382 (444)
T KOG2941|consen 375 CLDELVKH 382 (444)
T ss_pred hHHHHHhc
Confidence 89999963
No 87
>PF09365 DUF2461: Conserved hypothetical protein (DUF2461); InterPro: IPR012808 Members of this family are widely (though sparsely) distributed bacterial proteins, about 230 residues in length and in fungal proteins, which are around 400 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown.
Probab=21.10 E-value=1.4e+02 Score=20.17 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=29.7
Q ss_pred eeeeeee-ecccCcceeccchHH---HHHHHhHHhhccCHHHHHHHHHHHHHhhc
Q 047650 17 QNFPTFN-DVEPTIVRKQTTTFG---EAFAKHEEFFKDNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 17 ~ViPVFY-~V~ps~Vr~q~g~f~---~~f~~~~~~~~~~~e~v~~W~~AL~~va~ 67 (75)
.--|-|| +++|....--.|.|. +.+....+... +.-..|+.+|...+.
T Consensus 93 ~~~~gyY~hi~P~~~~~g~G~~~p~~~~L~~iR~~I~---~~~~~~~~il~~~~~ 144 (212)
T PF09365_consen 93 SQGPGYYFHISPDGSFLGGGFYMPEKEQLKRIRQEID---DNPEEFRKILEAPEF 144 (212)
T ss_pred CCCCEEEEEEecCccEEEEEEeeCCHHHHHHHHHHHH---hChHHHHHHHhChhh
Confidence 3456676 899999988888775 44444433332 333447777766554
No 88
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.88 E-value=1.2e+02 Score=18.05 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=14.8
Q ss_pred cCHHHHHHHHHHHHHhhc
Q 047650 50 DNIKKVQNWRQALKVVAN 67 (75)
Q Consensus 50 ~~~e~v~~W~~AL~~va~ 67 (75)
.++++..+|..||+++.+
T Consensus 81 ~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 81 STRAEKEKWLADLSKAIA 98 (99)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 467889999999988753
No 89
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.77 E-value=63 Score=21.19 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=16.4
Q ss_pred hHHHHHHHhh-hcCCCeeeeee
Q 047650 2 LDELLKIVEC-KNRKNQNFPTF 22 (75)
Q Consensus 2 LdEL~~I~e~-~~~~~~ViPVF 22 (75)
++.|..|.+. ....++++|.+
T Consensus 129 ~~~l~~il~~~~~~dRv~vP~l 150 (193)
T PF12612_consen 129 LSDLLSILKENLRNDRVVVPLL 150 (193)
T ss_pred HHHHHHHHHHhCCCCCeeecHH
Confidence 3567777777 77789999987
No 90
>PF07964 Red1: Rec10 / Red1; InterPro: IPR012491 Rec10 / Red1 is involved in meiotic recombination and chromosome segregation during homologous chromosome formation. This protein localises to the synaptonemal complex in Saccharomyces cerevisiae and the analogous structures (linear elements) in Schizosaccharomyces pombe []. This family is currently only found in fungi. ; GO: 0007059 chromosome segregation, 0007131 reciprocal meiotic recombination
Probab=20.77 E-value=1.2e+02 Score=24.72 Aligned_cols=41 Identities=10% Similarity=0.331 Sum_probs=34.9
Q ss_pred ceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccc
Q 047650 30 VRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISG 70 (75)
Q Consensus 30 Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G 70 (75)
++..+..|..-|.++...|..|-+++-++..-++...+|+-
T Consensus 654 ~kELSeKYQ~LF~eLQ~sFqnDteeM~~FvgEiKdml~LPE 694 (706)
T PF07964_consen 654 MKELSEKYQRLFKELQKSFQNDTEEMLKFVGEIKDMLNLPE 694 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCH
Confidence 44567889999999999999999999999888888888763
No 91
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=20.58 E-value=80 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHhh--hcCCCeeeeeeee
Q 047650 5 LLKIVEC--KNRKNQNFPTFND 24 (75)
Q Consensus 5 L~~I~e~--~~~~~~ViPVFY~ 24 (75)
|+.+++. ..+|.++||+|+-
T Consensus 205 f~~~v~~~l~~GG~vlipafa~ 226 (427)
T COG1236 205 FIESVKAALERGGTVLIPAFAL 226 (427)
T ss_pred HHHHHHHHHhCCCEEEEecccc
Confidence 4555665 6778899999964
No 92
>PHA03269 envelope glycoprotein C; Provisional
Probab=20.53 E-value=19 Score=28.19 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=33.7
Q ss_pred hhcCCCeeeeeeee-cccCcceeccchHHHHHHHhH--Hhhcc-----CHHHHHHHHHH
Q 047650 11 CKNRKNQNFPTFND-VEPTIVRKQTTTFGEAFAKHE--EFFKD-----NIKKVQNWRQA 61 (75)
Q Consensus 11 ~~~~~~~ViPVFY~-V~ps~Vr~q~g~f~~~f~~~~--~~~~~-----~~e~v~~W~~A 61 (75)
|--.|...||-|.+ +-|.-++-.+| +|.+|..|+ +.+++ +...+.+||--
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (566)
T PHA03269 162 CTHGGIQFIPYFHKFILPCYLQIFTG-QGAAFKQHELPKTYEEDFLDPEGANITRWKPL 219 (566)
T ss_pred EEecceeecchhheecceeEEEEeec-chhhheeccccchhhhhccCcccccccccccc
Confidence 34457889999987 56888887776 788888776 43331 12346778754
No 93
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=20.47 E-value=32 Score=16.64 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=9.3
Q ss_pred eeeeeecccCcce
Q 047650 19 FPTFNDVEPTIVR 31 (75)
Q Consensus 19 iPVFY~V~ps~Vr 31 (75)
=|-+|++||++.|
T Consensus 4 ~p~vi~~d~~~Fr 16 (31)
T PF05678_consen 4 PPTVIHTDPSNFR 16 (31)
T ss_pred CCEEEEeCHHHHH
Confidence 4677888887765
No 94
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=20.35 E-value=70 Score=23.12 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=25.1
Q ss_pred cCCCeeeeeeeecccCcceeccchHHHHHHHhHHhhc
Q 047650 13 NRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFK 49 (75)
Q Consensus 13 ~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~ 49 (75)
+.|..|+-||-+|+|...-. ...-|+.|.+...+|-
T Consensus 137 ~~G~RiLRvF~NINP~g~pR-vWrvGEpF~~~a~rfl 172 (281)
T PF11004_consen 137 TYGERILRVFTNINPDGEPR-VWRVGEPFEDMARRFL 172 (281)
T ss_pred CCCceeeEEeeccCCCCCCc-ccccCCChHHHHHHhc
Confidence 45789999999999994322 2344677777776663
No 95
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=20.34 E-value=83 Score=24.91 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=12.1
Q ss_pred HHHHHHHh-h-hcCCCeeeeee
Q 047650 3 DELLKIVE-C-KNRKNQNFPTF 22 (75)
Q Consensus 3 dEL~~I~e-~-~~~~~~ViPVF 22 (75)
++|..++. + +.+|.++||+|
T Consensus 389 ~~l~~~I~~tl~~gG~VLIP~f 410 (630)
T TIGR03675 389 KELIKVVNETIKRGGKVLIPVF 410 (630)
T ss_pred HHHHHHHHHHHhCCCEEEEEec
Confidence 34444433 3 66777888876
No 96
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.14 E-value=1.3e+02 Score=16.09 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.1
Q ss_pred HHHHHHHhh-hcCCCeeeeeeeecccCcce
Q 047650 3 DELLKIVEC-KNRKNQNFPTFNDVEPTIVR 31 (75)
Q Consensus 3 dEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr 31 (75)
.||.++++. ++.|. -+|+|=-+.|....
T Consensus 12 ~el~~~l~~~r~~~~-~~~~kAvlT~tN~~ 40 (58)
T PF12646_consen 12 EELDKFLDALRKAGI-PIPLKAVLTPTNIN 40 (58)
T ss_pred HHHHHHHHHHHHcCC-CcceEEEECCCccc
Confidence 478888888 77777 88999889998874
Done!