BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047651
         (568 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W9H|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
           Fulgidus.
 pdb|2BGG|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
           Fulgidus Complexed With A 16nt Sirna Duplex.
 pdb|2BGG|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
           Fulgidus Complexed With A 16nt Sirna Duplex.
 pdb|2W42|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
           Fulgidus Complexed With A 16nt Dna Duplex.
 pdb|2W42|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
           Fulgidus Complexed With A 16nt Dna Duplex
          Length = 427

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 20/26 (76%)

Query: 212 VKTLSVKLISVSFQSKRFFHRIHEAI 237
           +K LSV+++S ++ S+ ++H +HE +
Sbjct: 343 IKPLSVEIVSDNWTSEEYYHNVHEIL 368


>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
           Muscle Of The Leopard Shark (Triakis Semifasciata). The
           First X-Ray Study Of An Alpha-Parvalbumin
          Length = 109

 Score = 28.5 bits (62), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 315 IKSESEAKNLADKIIKNLETPQSKFIEKEQLKRFLN---------NEQHVKKLLKLFGAV 365
           +K +++A+    ++ + L+  QS FIE+E+LK  L          N+   K LL    + 
Sbjct: 35  LKGKTDAQ--VKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSD 92

Query: 366 KSGKIDKADFKKWVTK 381
             GKI   +F K V +
Sbjct: 93  HDGKIGADEFAKMVAQ 108


>pdb|3UW6|A Chain A, Crystal Structure Of Engineered Protein, Northeast
           Structural Genomics Consortium Target Or120
 pdb|3UW6|B Chain B, Crystal Structure Of Engineered Protein, Northeast
           Structural Genomics Consortium Target Or120
 pdb|3UW6|C Chain C, Crystal Structure Of Engineered Protein, Northeast
           Structural Genomics Consortium Target Or120
          Length = 390

 Score = 28.5 bits (62), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 22/52 (42%)

Query: 182 GVKGSKETSKIFQHVTRTLASFVAGAAVWFVKTLSVKLISVSFQSKRFFHRI 233
           GVK  +ET +I   + R     + G   WF     V     S+Q  RF H +
Sbjct: 138 GVKDEEETKRIVALIERHPHFVLEGLWTWFATADEVNTDYFSYQYTRFLHXL 189


>pdb|1YTU|A Chain A, Structural Basis For 5'-end-specific Recognition Of The
           Guide Rna Strand By The A. Fulgidus Piwi Protein
 pdb|1YTU|B Chain B, Structural Basis For 5'-end-specific Recognition Of The
           Guide Rna Strand By The A. Fulgidus Piwi Protein
          Length = 427

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 20/26 (76%)

Query: 212 VKTLSVKLISVSFQSKRFFHRIHEAI 237
           +K LSV+++S ++ S+ ++H +HE +
Sbjct: 343 IKPLSVEIVSDNWTSEEYYHNVHEIL 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,986,797
Number of Sequences: 62578
Number of extensions: 448261
Number of successful extensions: 1289
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1282
Number of HSP's gapped (non-prelim): 14
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)