Query 047651
Match_columns 568
No_of_seqs 243 out of 390
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 2.8E-78 6.1E-83 670.9 29.4 499 60-567 131-704 (714)
2 PRK10334 mechanosensitive chan 99.6 3E-13 6.5E-18 139.6 21.3 161 397-568 63-282 (286)
3 PRK11281 hypothetical protein; 99.5 5.2E-10 1.1E-14 132.8 42.4 218 339-567 800-1092(1113)
4 PF00924 MS_channel: Mechanose 99.5 1.3E-12 2.8E-17 127.7 16.0 147 404-554 1-206 (206)
5 PRK10929 putative mechanosensi 99.3 6E-11 1.3E-15 140.3 22.4 165 393-567 865-1089(1109)
6 PRK11465 putative mechanosensi 99.1 9.3E-09 2E-13 117.3 20.4 160 396-567 506-726 (741)
7 COG0668 MscS Small-conductance 99.1 2.4E-08 5.3E-13 103.3 22.0 166 392-565 76-299 (316)
8 COG3264 Small-conductance mech 98.4 5.2E-06 1.1E-10 94.9 16.6 191 366-565 552-812 (835)
9 KOG0044 Ca2+ sensor (EF-Hand s 97.5 0.00014 2.9E-09 71.2 5.4 87 319-406 60-152 (193)
10 PF00036 EF-hand_1: EF hand; 97.1 0.00065 1.4E-08 46.1 3.4 28 354-381 1-28 (29)
11 PF13499 EF-hand_7: EF-hand do 97.0 0.00079 1.7E-08 53.6 3.9 54 326-379 3-66 (66)
12 COG5126 FRQ1 Ca2+-binding prot 96.9 0.0013 2.9E-08 62.4 5.4 60 322-382 55-121 (160)
13 cd00052 EH Eps15 homology doma 96.8 0.0029 6.3E-08 50.0 5.5 58 326-383 2-63 (67)
14 cd05022 S-100A13 S-100A13: S-1 96.6 0.0071 1.5E-07 52.0 7.2 66 319-384 4-78 (89)
15 cd05026 S-100Z S-100Z: S-100Z 96.6 0.0066 1.4E-07 52.4 7.0 64 319-382 6-82 (93)
16 smart00027 EH Eps15 homology d 96.6 0.0067 1.4E-07 52.4 7.0 64 322-385 9-76 (96)
17 PF13833 EF-hand_8: EF-hand do 96.5 0.0049 1.1E-07 47.2 4.7 45 337-381 2-53 (54)
18 cd05029 S-100A6 S-100A6: S-100 96.5 0.0059 1.3E-07 52.3 5.6 58 325-382 12-80 (88)
19 cd05023 S-100A11 S-100A11: S-1 96.4 0.0076 1.6E-07 51.8 6.1 62 321-382 7-81 (89)
20 cd05025 S-100A1 S-100A1: S-100 96.4 0.0097 2.1E-07 51.0 6.5 63 320-382 6-81 (92)
21 cd00213 S-100 S-100: S-100 dom 96.3 0.011 2.4E-07 49.9 6.4 65 320-384 5-82 (88)
22 KOG0027 Calmodulin and related 96.1 0.012 2.6E-07 55.1 6.0 64 323-386 44-118 (151)
23 cd05031 S-100A10_like S-100A10 96.0 0.02 4.4E-07 49.2 6.5 63 319-381 4-79 (94)
24 cd05030 calgranulins Calgranul 95.8 0.021 4.6E-07 48.7 6.0 64 320-383 5-81 (88)
25 cd00051 EFh EF-hand, calcium b 95.8 0.021 4.4E-07 43.0 5.3 54 326-379 3-62 (63)
26 PRK12309 transaldolase/EF-hand 95.7 0.021 4.5E-07 62.0 6.6 65 313-384 324-388 (391)
27 cd00252 SPARC_EC SPARC_EC; ext 95.6 0.037 8E-07 50.0 6.8 61 319-379 44-106 (116)
28 KOG0034 Ca2+/calmodulin-depend 95.4 0.025 5.5E-07 55.2 5.5 64 321-384 64-135 (187)
29 PF13405 EF-hand_6: EF-hand do 95.3 0.018 3.9E-07 39.3 3.1 26 355-380 2-27 (31)
30 PF13202 EF-hand_5: EF hand; P 95.3 0.016 3.5E-07 37.9 2.6 23 356-378 2-24 (25)
31 cd05027 S-100B S-100B: S-100B 95.3 0.044 9.6E-07 46.9 6.1 63 320-382 5-80 (88)
32 PTZ00184 calmodulin; Provision 95.2 0.046 1E-06 49.5 6.2 58 323-380 84-147 (149)
33 PLN02964 phosphatidylserine de 95.0 0.047 1E-06 62.6 6.8 60 322-381 178-243 (644)
34 PTZ00183 centrin; Provisional 94.8 0.056 1.2E-06 49.8 5.7 58 323-380 90-153 (158)
35 PTZ00184 calmodulin; Provision 94.8 0.054 1.2E-06 49.1 5.5 60 323-382 47-113 (149)
36 PTZ00183 centrin; Provisional 94.7 0.043 9.4E-07 50.5 4.7 60 323-382 53-119 (158)
37 KOG0028 Ca2+-binding protein ( 94.4 0.05 1.1E-06 51.5 4.4 58 327-384 73-137 (172)
38 KOG0027 Calmodulin and related 94.4 0.058 1.2E-06 50.4 4.9 82 323-404 8-95 (151)
39 COG5126 FRQ1 Ca2+-binding prot 93.7 0.089 1.9E-06 50.1 4.7 56 325-380 94-155 (160)
40 PF13499 EF-hand_7: EF-hand do 92.5 0.17 3.6E-06 40.0 3.9 31 355-385 2-32 (66)
41 smart00054 EFh EF-hand, calciu 91.3 0.2 4.3E-06 31.4 2.6 27 355-381 2-28 (29)
42 PF12763 EF-hand_4: Cytoskelet 88.2 1 2.2E-05 39.9 5.4 59 325-384 12-74 (104)
43 cd05025 S-100A1 S-100A1: S-100 88.1 0.65 1.4E-05 39.6 4.0 28 354-381 10-39 (92)
44 cd05026 S-100Z S-100Z: S-100Z 88.1 0.58 1.3E-05 40.3 3.7 28 355-382 12-41 (93)
45 cd05024 S-100A10 S-100A10: A s 87.8 2.3 5E-05 36.9 7.1 60 322-382 7-77 (91)
46 cd00052 EH Eps15 homology doma 86.8 0.65 1.4E-05 36.3 3.0 27 356-382 2-28 (67)
47 cd05031 S-100A10_like S-100A10 86.8 0.92 2E-05 38.9 4.2 27 355-381 10-38 (94)
48 KOG0034 Ca2+/calmodulin-depend 85.5 1.1 2.4E-05 43.8 4.5 62 319-382 30-96 (187)
49 KOG0037 Ca2+-binding protein, 84.8 2.5 5.3E-05 42.2 6.5 67 319-385 120-192 (221)
50 cd05022 S-100A13 S-100A13: S-1 84.7 1.2 2.6E-05 38.2 3.8 29 355-383 10-40 (89)
51 KOG2643 Ca2+ binding protein, 84.1 0.31 6.7E-06 52.8 -0.1 52 327-380 205-260 (489)
52 cd00213 S-100 S-100: S-100 dom 83.3 1.4 3E-05 37.0 3.6 28 354-381 9-38 (88)
53 PF14658 EF-hand_9: EF-hand do 83.3 2.1 4.6E-05 34.8 4.4 54 328-381 3-64 (66)
54 KOG0044 Ca2+ sensor (EF-Hand s 82.6 1.7 3.7E-05 42.8 4.4 58 323-380 26-91 (193)
55 KOG0038 Ca2+-binding kinase in 82.4 1.2 2.6E-05 41.8 3.0 62 323-384 71-139 (189)
56 cd05027 S-100B S-100B: S-100B 82.1 1.7 3.7E-05 37.1 3.7 27 355-381 10-38 (88)
57 PLN02964 phosphatidylserine de 81.8 2.2 4.9E-05 49.2 5.6 58 325-383 145-209 (644)
58 smart00027 EH Eps15 homology d 81.7 1.4 3E-05 37.9 3.1 28 354-381 11-38 (96)
59 PF09279 EF-hand_like: Phospho 80.1 1.2 2.6E-05 37.1 2.1 54 326-380 3-68 (83)
60 PRK11281 hypothetical protein; 79.9 2.8 6.1E-05 51.4 5.8 116 57-175 767-897 (1113)
61 cd00051 EFh EF-hand, calcium b 77.0 3.1 6.6E-05 30.7 3.4 29 355-383 2-30 (63)
62 cd00252 SPARC_EC SPARC_EC; ext 74.5 3.5 7.6E-05 37.2 3.5 25 354-378 49-73 (116)
63 KOG0031 Myosin regulatory ligh 73.0 4.3 9.3E-05 38.5 3.8 45 337-381 78-129 (171)
64 PF10591 SPARC_Ca_bdg: Secrete 72.9 5.2 0.00011 35.9 4.2 59 319-377 50-112 (113)
65 KOG0031 Myosin regulatory ligh 72.6 3.1 6.7E-05 39.5 2.7 59 354-424 33-91 (171)
66 KOG0036 Predicted mitochondria 69.9 6.5 0.00014 42.7 4.8 56 324-379 83-144 (463)
67 KOG0037 Ca2+-binding protein, 68.0 6.4 0.00014 39.3 4.0 54 330-383 101-154 (221)
68 PF14788 EF-hand_10: EF hand; 64.1 10 0.00022 29.4 3.6 31 351-381 19-49 (51)
69 KOG3966 p53-mediated apoptosis 62.2 1.9E+02 0.0041 30.2 13.1 106 109-250 131-237 (360)
70 KOG4223 Reticulocalbin, calume 62.0 10 0.00022 39.9 4.4 58 326-383 166-230 (325)
71 PRK10929 putative mechanosensi 59.8 44 0.00096 41.3 9.8 110 60-175 767-894 (1109)
72 PF09204 Colicin_immun: Bacter 52.9 35 0.00077 29.4 5.4 44 367-410 14-57 (88)
73 KOG0028 Ca2+-binding protein ( 52.8 24 0.00052 33.8 4.8 58 322-379 105-168 (172)
74 KOG0036 Predicted mitochondria 51.8 55 0.0012 35.9 7.8 72 314-385 42-114 (463)
75 KOG0038 Ca2+-binding kinase in 50.1 18 0.00038 34.2 3.3 58 325-382 110-178 (189)
76 PF13405 EF-hand_6: EF-hand do 49.5 10 0.00023 25.4 1.4 25 326-350 3-27 (31)
77 KOG0046 Ca2+-binding actin-bun 47.0 22 0.00048 39.9 4.1 54 328-382 24-86 (627)
78 PRK12309 transaldolase/EF-hand 46.7 23 0.00049 38.7 4.2 24 353-376 334-357 (391)
79 PF00036 EF-hand_1: EF hand; 46.4 14 0.00031 24.8 1.7 25 325-349 2-26 (29)
80 cd05029 S-100A6 S-100A6: S-100 45.2 16 0.00034 31.1 2.2 27 355-381 12-40 (88)
81 PF07879 PHB_acc_N: PHB/PHA ac 39.1 8.2 0.00018 31.2 -0.5 44 335-382 15-58 (64)
82 KOG0377 Protein serine/threoni 38.3 27 0.00059 38.4 3.1 27 355-381 549-575 (631)
83 PF10268 Tmemb_161AB: Predicte 37.4 3.3E+02 0.0072 30.8 11.5 24 155-178 164-187 (486)
84 PF08726 EFhand_Ca_insen: Ca2+ 36.3 28 0.00062 28.6 2.2 34 328-363 11-44 (69)
85 KOG2562 Protein phosphatase 2 34.4 54 0.0012 36.4 4.6 67 318-385 220-310 (493)
86 KOG1419 Voltage-gated K+ chann 33.4 1.9E+02 0.0041 33.1 8.6 31 67-97 79-113 (654)
87 cd05023 S-100A11 S-100A11: S-1 32.3 49 0.0011 28.2 3.2 29 355-383 11-41 (89)
88 PF03526 Microcin: Colicin E1 31.7 81 0.0018 24.7 3.8 35 198-232 8-42 (55)
89 KOG0030 Myosin essential light 31.7 70 0.0015 30.1 4.2 31 354-384 89-119 (152)
90 KOG0041 Predicted Ca2+-binding 29.9 66 0.0014 32.1 3.9 76 323-405 99-180 (244)
91 PF14821 Thr_synth_N: Threonin 29.9 1.1E+02 0.0023 25.6 4.7 58 323-383 13-79 (79)
92 COG5394 Uncharacterized protei 27.9 27 0.00059 33.4 0.9 52 324-382 16-67 (193)
93 PRK11465 putative mechanosensi 26.3 9.4E+02 0.02 28.8 13.2 61 152-215 426-486 (741)
94 COG5346 Predicted membrane pro 26.1 5.2E+02 0.011 23.8 10.8 45 397-445 83-127 (136)
95 TIGR01848 PHA_reg_PhaR polyhyd 25.7 19 0.00041 32.1 -0.5 50 326-382 9-58 (107)
96 PF08006 DUF1700: Protein of u 25.6 4.1E+02 0.0088 25.4 8.7 12 341-352 42-53 (181)
97 PF12174 RST: RCD1-SRO-TAF4 (R 25.5 74 0.0016 26.2 2.9 51 335-386 4-58 (70)
98 KOG0030 Myosin essential light 25.5 73 0.0016 30.0 3.2 26 354-379 12-37 (152)
99 KOG4251 Calcium binding protei 24.0 75 0.0016 32.5 3.2 56 325-380 103-167 (362)
100 PF11755 DUF3311: Protein of u 23.6 1.4E+02 0.003 24.2 4.2 37 84-120 3-39 (66)
101 cd00491 4Oxalocrotonate_Tautom 23.4 3E+02 0.0065 20.6 6.0 46 466-511 3-48 (58)
102 PF13239 2TM: 2TM domain 23.3 4.1E+02 0.0088 22.1 7.2 46 77-131 14-59 (83)
103 KOG2643 Ca2+ binding protein, 22.6 93 0.002 34.4 3.8 54 330-383 293-348 (489)
104 PRK02289 4-oxalocrotonate taut 21.9 2.7E+02 0.006 21.5 5.5 47 466-512 4-50 (60)
105 KOG4251 Calcium binding protei 21.5 94 0.002 31.8 3.4 48 355-404 103-150 (362)
106 PF08044 DUF1707: Domain of un 21.1 1E+02 0.0023 23.9 2.9 33 354-386 7-40 (53)
107 KOG2562 Protein phosphatase 2 20.1 1.1E+02 0.0024 34.1 3.8 59 322-382 310-380 (493)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.8e-78 Score=670.88 Aligned_cols=499 Identities=36% Similarity=0.607 Sum_probs=450.5
Q ss_pred cccccchHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhccccCCCceEeeehhhHHHHHHHHHHHHhHHHhhhhheeeee
Q 047651 60 EEEKEDQDIIVG-KIKEVSLMLELIMFVSIMWLLIASLTLKRLQNHVIWDLELWKWCLLALVILSGPLLSRCFISVIVFL 138 (568)
Q Consensus 60 ~~~~~~~~~~~~-~~~~~~~~~r~~~~v~~~~~L~~~~~i~~~~~~~i~~~~lw~w~~~~~v~w~g~lva~~~~~~~~~~ 138 (568)
....+....-++ -.+++..++.|+.++++++.++|++.+.......+|.+..|+|++.+++..||+++.+|...+++|+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~ 210 (714)
T KOG4629|consen 131 IFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFL 210 (714)
T ss_pred ccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHH
Confidence 334444444454 2346888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccchhhHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHhCCCCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047651 139 VEKKFMLKHLVLYFVYGLRTSVSVFIWLT-CVLLVWIFLFDDGYGVKGSKETSKIFQHVTRTLASFVAGAAVWFVKTLSV 217 (568)
Q Consensus 139 ~~~~~~~~kk~l~~~~~l~~~~~~~~W~~-~~l~~~~~l~~~~~~~~~~~~~~~~~~~v~kvL~~~~v~s~~~l~ekili 217 (568)
++.|+..+++|+|+++|++..++.|+|++ +++++|..+++.. +++....+ .+..++++ +|+++.++.|++|++++
T Consensus 211 ~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~--v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~ 286 (714)
T KOG4629|consen 211 IESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKI--VFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILM 286 (714)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhh--hhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhh
Confidence 99999999999999999999999999999 9999999999987 55433333 67789999 99999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhHHHHHHHhccchhHHhhhhcccccchhhhhhhccccc--------ccccccccchhhh
Q 047651 218 KLISVSFQSKRFFHRIHEAIFHQHVLQVLSAAQENKIKKLRTANTAMQFISRISKRKKS--------KEKMTIEKISACI 289 (568)
Q Consensus 218 q~ia~sFH~~~y~dRI~es~~~~~~L~~L~~~~~ee~~~i~~s~~~g~~~~~~~~~k~g--------~~k~~~~~vsa~~ 289 (568)
|++|++||+++|++||||+.|++++|++|++||.+|+ .|+. +.++...++.+.+.| -|+|+..++|+|+
T Consensus 287 kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~~e~--~gr~-s~~~~~~s~~~~r~~s~~i~~~~l~~~~~~~~sa~~ 363 (714)
T KOG4629|consen 287 KVIASSFHRSTYFSRIQESVFTQEVLETLSGPPREED--VGRE-STFRAIFSPGLSRSGSAKIGMDKLHKIKKKNVSAWN 363 (714)
T ss_pred HHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCccccc--cccc-ccceeeccccccchhhcccccchhhhhhHhhhcHhh
Confidence 9999999999999999999999999999999877322 4432 212222222111111 1677778899999
Q ss_pred hhHHhhhccCCCCCcccccccch-------hhccCHHHHHHHHHHHhhhccCCCCcccchhhHhcccCChHHHHHHHHhh
Q 047651 290 SKRLFSSRNSDLKSSQSNEIDES-------NEIKSESEAKNLADKIIKNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLF 362 (568)
Q Consensus 290 ~k~l~~~v~~~~ls~~~~~~~~~-------~~i~s~~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~f 362 (568)
|+++++.++..++++++...+.+ .+++|+.+|+++|++||++++.||..++++||+.+|+++|+ |+.+|++|
T Consensus 364 ~~~~~~~~~~~~~t~l~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~-a~~~~slf 442 (714)
T KOG4629|consen 364 MRRLMTILAAGGLTTLSPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEE-AERAFSLF 442 (714)
T ss_pred hhHHHHHHhccCcccCCccccccccccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHH-HHHHHHhh
Confidence 99999999999988888766544 49999999999999999999999999999999999999888 99999999
Q ss_pred CCCCCCCccHHHHHHHHHHHHHhHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Q 047651 363 GAVKSGKIDKADFKKWVTKVYNDRETLKRSLNDAKTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLA 442 (568)
Q Consensus 363 D~d~nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~s 442 (568)
|....+.||++++++|++++|+|||+|+++|+|++++|++||+++.+++.++++++|++.+|++++++++.+++|.++++
T Consensus 443 e~~~~~~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~ 522 (714)
T KOG4629|consen 443 EGASDENITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLA 522 (714)
T ss_pred hhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeee
Confidence 98756669999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred HHH----------------------------------------------------------HhcCCcEEeeecCCCCcee
Q 047651 443 FMF----------------------------------------------------------VLATKPISNFYRSPREMGD 464 (568)
Q Consensus 443 FIF----------------------------------------------------------~L~tk~I~N~~RS~~~~~e 464 (568)
||| +|++|+|.|++||| .|.+
T Consensus 523 fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~-~~~~ 601 (714)
T KOG4629|consen 523 FIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSP-DMGD 601 (714)
T ss_pred eehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCc-cccc
Confidence 555 99999999999999 9999
Q ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCccCCcEEEEeecCCCceEEEEEEEEEecccccHHHHHHHHHHHHHHHH
Q 047651 465 TVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWSGDHSVVVKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELK 544 (568)
Q Consensus 465 ~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~p~~~v~v~~i~d~~kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~ 544 (568)
.++|.++++||++||+.||++|.+||+++|++|+|+..+++.+++|.|++.++++++|++||||.++++.||++|+++|.
T Consensus 602 ~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~ 681 (714)
T KOG4629|consen 602 EVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALT 681 (714)
T ss_pred cEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeecCCceEEEeecC
Q 047651 545 KIFEELGIRYNLLPQEVRVSYAG 567 (568)
Q Consensus 545 ~~l~elgI~y~lP~q~V~v~~~~ 567 (568)
++|+|+||+|+++|+++++.++|
T Consensus 682 ~~~~eLdI~y~l~p~~in~~~~~ 704 (714)
T KOG4629|consen 682 KIMRELDIEYTLYPLDINLKNLP 704 (714)
T ss_pred HHHHHcCcceeecCcchhhhcCC
Confidence 99999999999999999999876
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=99.56 E-value=3e-13 Score=139.62 Aligned_cols=161 Identities=14% Similarity=0.217 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH-------------------------------
Q 047651 397 KTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAFMF------------------------------- 445 (568)
Q Consensus 397 ~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sFIF------------------------------- 445 (568)
.+..+.+.+++..+++++++++.|..+|++++++++++|..++++.|-+
T Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i~~~~ 142 (286)
T PRK10334 63 ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVA 142 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4677788899999999999999999999999999988888777765433
Q ss_pred --------------------------HhcCCcEEeeecCCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCcc-
Q 047651 446 --------------------------VLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWS- 498 (568)
Q Consensus 446 --------------------------~L~tk~I~N~~RS~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~- 498 (568)
.+.+.+|+|++|.+ .++..+++.|+|+++.++ .++.+++.++++|+.-.
T Consensus 143 G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~-~rr~~~~v~V~y~~d~~~---~~~il~~~~~~~~~vl~~ 218 (286)
T PRK10334 143 GTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKD 218 (286)
T ss_pred EEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCC-eEEEEEEEEecCCCCHHH---HHHHHHHHHHhCCceecC
Confidence 89999999999999 889999999999999885 56678888999998876
Q ss_pred CCcEEEEeecCCCc-eEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCceEEEeecCC
Q 047651 499 GDHSVVVKDIEDVN-KMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVSYAGR 568 (568)
Q Consensus 499 p~~~v~v~~i~d~~-kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y~lP~q~V~v~~~~~ 568 (568)
|.+.+.+.+++|+. .+++++|+ +. ..+++.|++++..+++++++.||++++|.+.+++.+.++
T Consensus 219 p~p~v~~~~~~dssi~~~v~~wv--~~-----~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~~ 282 (286)
T PRK10334 219 REMTVRLNELGASSINFVVRVWS--NS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKE 282 (286)
T ss_pred CCCEEEEEeeeCceEEEEEEEEE--ec-----chhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCCc
Confidence 67889999999853 45555554 32 246788899999999999999999999999999988763
No 3
>PRK11281 hypothetical protein; Provisional
Probab=99.48 E-value=5.2e-10 Score=132.83 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=154.5
Q ss_pred ccchhhHhcccCChHHHHHHHHhhCCC----CCCCccHHHHHHHHHHH------------HHhHHHHHhhccchhHHHHH
Q 047651 339 FIEKEQLKRFLNNEQHVKKLLKLFGAV----KSGKIDKADFKKWVTKV------------YNDRETLKRSLNDAKTAIEE 402 (568)
Q Consensus 339 ~i~~eDl~~~f~~ee~a~~af~~fD~d----~nG~Is~~e~~~~vv~i------------y~ERk~L~~SL~D~~sav~~ 402 (568)
|....|+..+|+--+ ....+...... ..+.||...+...++=+ .-++. +...++...+....
T Consensus 800 ~~~w~~~~~~~~~l~-~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~-~~~rl~l~~~~~~~ 877 (1113)
T PRK11281 800 YWVWSDLITVFSYLD-SITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVL-VLSRLNLRQGTSYA 877 (1113)
T ss_pred HHHHHHHHHHHHHhc-CcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCchHHHH
Confidence 445566666666333 33444444332 33457777665552211 11111 11223333456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH--------------H-H----------------------
Q 047651 403 LNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAF--------------M-F---------------------- 445 (568)
Q Consensus 403 Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sF--------------I-F---------------------- 445 (568)
+.+++.++++++++++.+..+|++.+++.+.+++.++++.| | |
T Consensus 878 i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I~~~~G~V~~I 957 (1113)
T PRK11281 878 ITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKI 957 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCEEEEEEEE
Confidence 88889999999999999999999988765444443333221 1 2
Q ss_pred --------------------HhcCCcEEeeecCCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCcc-CCcEEE
Q 047651 446 --------------------VLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWS-GDHSVV 504 (568)
Q Consensus 446 --------------------~L~tk~I~N~~RS~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~-p~~~v~ 504 (568)
.+.+..|+|+++++..++..++++|+|+++.+ ..++.+.+.++++|+... |.+.|.
T Consensus 958 ~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~---~v~~iL~eaa~~~p~Vl~~P~P~V~ 1034 (1113)
T PRK11281 958 RIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLE---KVRELLLQAATENPRVMKEPEPQVF 1034 (1113)
T ss_pred EeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHH---HHHHHHHHHHHcCcccccCCCCEEE
Confidence 78899999999998237899999999999887 567777888899999876 788999
Q ss_pred EeecCCC-ceEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCceEEEeecC
Q 047651 505 VKDIEDV-NKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVSYAG 567 (568)
Q Consensus 505 v~~i~d~-~kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y~lP~q~V~v~~~~ 567 (568)
+.+++|. -.+++++|+. +.+.++..++++...+++.|++.||++++|.++||+.+.+
T Consensus 1035 ~~~fgdssi~~~lr~wv~------~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~ 1092 (1113)
T PRK11281 1035 FLNFGASTLDHELRLYVR------ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQK 1092 (1113)
T ss_pred EEeccCceEEEEEEEEEc------CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCC
Confidence 9999984 2445555552 3467899999999999999999999999999999998753
No 4
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=99.46 E-value=1.3e-12 Score=127.69 Aligned_cols=147 Identities=29% Similarity=0.413 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH--------------------------------------
Q 047651 404 NRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAFMF-------------------------------------- 445 (568)
Q Consensus 404 d~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sFIF-------------------------------------- 445 (568)
++++.++++++++++++..+|++.+++++++|..+++++|.|
T Consensus 1 ~~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~ 80 (206)
T PF00924_consen 1 NKIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEIGGVEGRVEEIG 80 (206)
T ss_dssp --HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEESSS-EEEEEEE-
T ss_pred ChHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEEEEeehHHHhcC
Confidence 367788888888999999999999999988888888777666
Q ss_pred -------------------HhcCCcEEeeec-CCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCcc-CCcEEE
Q 047651 446 -------------------VLATKPISNFYR-SPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWS-GDHSVV 504 (568)
Q Consensus 446 -------------------~L~tk~I~N~~R-S~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~-p~~~v~ 504 (568)
.+.+++|.|++| ++ .++..+++.+++++++++++++.+.+.+.++++|.+.. +.+.+.
T Consensus 81 l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (206)
T PF00924_consen 81 LRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSP-YRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVV 159 (206)
T ss_dssp SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SS-EEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEE
T ss_pred cceeeeecCCCCEEEEEchheeeEEEEEeeccCC-ceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEE
Confidence 999999999999 89 99999999999999999999999999999999998887 667788
Q ss_pred EeecCCCceEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCee
Q 047651 505 VKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRY 554 (568)
Q Consensus 505 v~~i~d~~kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y 554 (568)
+.++++ +.+++.+.+.++. +++.+++..|++++..+.+.|++.||++
T Consensus 160 ~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 160 VDEIGD-SSLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEEE-S-SSEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred EccccC-CceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 888776 4777777776665 4667899999999999999999999974
No 5
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=99.35 E-value=6e-11 Score=140.29 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=136.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH--------------H-H------------
Q 047651 393 LNDAKTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAF--------------M-F------------ 445 (568)
Q Consensus 393 L~D~~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sF--------------I-F------------ 445 (568)
++-..+....+.+++.++++++++++.+..+|++.+++.+.+|+.++++.| | |
T Consensus 865 ~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I 944 (1109)
T PRK10929 865 LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI 944 (1109)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 333456788889999999999999999999999998876666665555433 1 1
Q ss_pred ------------------------------HhcCCcEEeeecCCCC-ceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcC
Q 047651 446 ------------------------------VLATKPISNFYRSPRE-MGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKH 494 (568)
Q Consensus 446 ------------------------------~L~tk~I~N~~RS~~~-~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~p 494 (568)
.+.+..|+|+++++ . ++..++++|+|+++.+ ..++.+.+.++++|
T Consensus 945 ~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d-~~~Rv~i~VgV~Y~sDie---~v~~iL~eaa~~~~ 1020 (1109)
T PRK10929 945 RDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSD-SVTRVVLTIPAPADANSE---EVTEILLTAARRCS 1020 (1109)
T ss_pred CCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCC-cceEEEEEEEeCCCCCHH---HHHHHHHHHHHhCc
Confidence 88899999999998 6 6899999999999987 66777788899999
Q ss_pred CCcc-CCcEEEEeecCCCc-eEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCceEEEeecC
Q 047651 495 KHWS-GDHSVVVKDIEDVN-KMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVSYAG 567 (568)
Q Consensus 495 rdf~-p~~~v~v~~i~d~~-kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y~lP~q~V~v~~~~ 567 (568)
+... |.+.+.+.+++|+. .+++++|+ + +.+.++..|++++..+++.+++.||+.++|++.||+++.+
T Consensus 1021 ~VL~~P~P~V~~~~fgdssi~~elr~wv--~----~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~ 1089 (1109)
T PRK10929 1021 LVLDNPAPEVFLVDLQQGIQIFELRIYA--A----EMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLG 1089 (1109)
T ss_pred cccCCCCCEEEEEecCCCceEEEEEEEE--c----ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCC
Confidence 8875 88899999999742 34555555 2 3457899999999999999999999999999999999875
No 6
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.05 E-value=9.3e-09 Score=117.30 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH------------------------------
Q 047651 396 AKTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAFMF------------------------------ 445 (568)
Q Consensus 396 ~~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sFIF------------------------------ 445 (568)
.+++.+.+.+++.+++++++++++|..+|+++++++++.|..++++.|-.
T Consensus 506 ~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v~g~ 585 (741)
T PRK11465 506 TRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPL 585 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEECCe
Confidence 57888999999999999999999999999999999988887777664322
Q ss_pred ---------------------------HhcCCcEEeeecCCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcCCC--
Q 047651 446 ---------------------------VLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKH-- 496 (568)
Q Consensus 446 ---------------------------~L~tk~I~N~~RS~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prd-- 496 (568)
.+. .|.|++|.. ++..+++.|+|+++.|+..++-+++.+-+.++|..
T Consensus 586 ~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~--~v~N~Sr~~--~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~~ 661 (741)
T PRK11465 586 TGTVERMSIRSVGVRQDTGAYHIIPWSSIT--TFANFVRGI--GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRG 661 (741)
T ss_pred EEEEEEEeeeEEEEEcCCCCEEEEECCcce--eeEEeccCc--eEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCccccc
Confidence 443 389999865 67888999999999997777666655556566652
Q ss_pred --ccCCcEEEEeecCCCceEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCceEEEeecC
Q 047651 497 --WSGDHSVVVKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVSYAG 567 (568)
Q Consensus 497 --f~p~~~v~v~~i~d~~kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y~lP~q~V~v~~~~ 567 (568)
..+...+.+.+++|+ .+.+++++..+ .+..|..+.+++..+|+.+++.||++ |.+.+++.+.|
T Consensus 662 ~il~~p~~vgV~~lgdS-si~lrvr~~t~-----p~~qw~v~rel~~~IK~~Fde~GIeI--P~~tv~v~~~~ 726 (741)
T PRK11465 662 LIIGEPNFAGIVGLTNT-AFTLRVSFTTL-----PLKQWTVRFALDSQVKKHFDLAGVRA--PVQTYQVLPAP 726 (741)
T ss_pred cccCCCCeEEEEEecCc-eEEEEEEEEEC-----cchHHHHHHHHHHHHHHHHHHCCCCC--CCCceEeecCC
Confidence 222234778888875 67777777543 35788999999999999999999996 67778887654
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=2.4e-08 Score=103.29 Aligned_cols=166 Identities=19% Similarity=0.223 Sum_probs=130.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH--------------------------
Q 047651 392 SLNDAKTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAFMF-------------------------- 445 (568)
Q Consensus 392 SL~D~~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sFIF-------------------------- 445 (568)
...+....-..+.+++.++++++++++.+..+|++++++++++|..++++.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~ 155 (316)
T COG0668 76 RLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIE 155 (316)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEE
Confidence 333333333378888889999999999999999999999988888777765433
Q ss_pred --------------------------------HhcCCcEEeeecCCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhc
Q 047651 446 --------------------------------VLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERK 493 (568)
Q Consensus 446 --------------------------------~L~tk~I~N~~RS~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~ 493 (568)
.+.+..|.|++|++ .++..+++.|+|+++.++.+.+..++.+.+..+
T Consensus 156 i~~~~~G~V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~-~~~~~~~v~v~~~~~~~~~~~i~~~~~~~~~~~ 234 (316)
T COG0668 156 IGSGVEGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREP-GRRVEVKVGVAYDSDLEKALKILKEVLEELPEV 234 (316)
T ss_pred ECCCceEEEEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCC-cEEEEEEEeeccCCCHHHHHHHHHHHHHhcccc
Confidence 88899999999999 889999999999999997766666666555554
Q ss_pred CCCccCCcEEEEeecCCCceEEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCceEEEee
Q 047651 494 HKHWSGDHSVVVKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVSY 565 (568)
Q Consensus 494 prdf~p~~~v~v~~i~d~~kl~l~v~i~hk~Nwqn~~~r~~rR~~~~~~L~~~l~elgI~y~lP~q~V~v~~ 565 (568)
+. ..|.+.+.+.++++. .+.+.+++.. +....+..++++...+++++++.||+.++|.|.++..+
T Consensus 235 ~~-~~~~~~v~~~~~~~~-~~~i~v~~~t-----~~~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~ 299 (316)
T COG0668 235 LK-IEPEPVIGVSELGDS-GINIRVRFWT-----NPEDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGE 299 (316)
T ss_pred cc-cCCCcEEEEeeccCC-ceEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcC
Confidence 43 257778999999885 5555444422 33349999999999999999999999999999998544
No 8
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=5.2e-06 Score=94.87 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=140.6
Q ss_pred CCCCccHHHHHHHHHHH---HHh--------HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 047651 366 KSGKIDKADFKKWVTKV---YND--------RETLKRSLNDAKTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVV 434 (568)
Q Consensus 366 ~nG~Is~~e~~~~vv~i---y~E--------Rk~L~~SL~D~~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~l 434 (568)
|+-.||.-.+-.+|+=+ |-- +..+-..++=....-..+..++..++..+..++.++.+|++-+++-...
T Consensus 552 g~~~isl~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~ 631 (835)
T COG3264 552 GVESITLGALLQAVLLFLITYVLTRNLPGWLEVRVLQRLDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLA 631 (835)
T ss_pred ceeEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHH
Confidence 55577777776654321 111 1122222332333445677788888888899999999999998754433
Q ss_pred HH---------HHHHHHH------HH------------------------------------------HhcCCcEEeeec
Q 047651 435 TS---------QLLLLAF------MF------------------------------------------VLATKPISNFYR 457 (568)
Q Consensus 435 ss---------~~la~sF------IF------------------------------------------~L~tk~I~N~~R 457 (568)
|+ |.+.--| +| .+-+..+.|++-
T Consensus 632 gALsvGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~ 711 (835)
T COG3264 632 GALSVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSL 711 (835)
T ss_pred HHhhhhhchhHHHHHHHhhhhhhhheecCcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeec
Confidence 33 3332222 22 777888999998
Q ss_pred CCCCceeEEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCcc-CCcEEEEeecCCC-ceEEEEEEEEEecccccHHHHHHH
Q 047651 458 SPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWS-GDHSVVVKDIEDV-NKMRMTLYVTHTMNFQDYMKKLKR 535 (568)
Q Consensus 458 S~~~~~e~i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~-p~~~v~v~~i~d~-~kl~l~v~i~hk~Nwqn~~~r~~r 535 (568)
++...+..+.+++.|+|++| ..++-+.+-.++||+.-. |.+.+.+.+++++ -..++++|+.- .+.+...
T Consensus 712 ~~~~~R~~i~v~vay~sD~~---~V~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~s~L~fELr~~v~~------~~~~~~~ 782 (835)
T COG3264 712 RDTTTRLVIPVGVAYGSDPE---LVRELLLEAAREHPRVLKDPAPEVFFTAFGASSLDFELRVYVAE------LGDRMPV 782 (835)
T ss_pred cCceEEEEEEecccCCCCHH---HHHHHHHHHHHhCCCccCCCCCeeEeecccccceeEEEEEEeec------cccccch
Confidence 88567899999999999999 778888999999999988 8889999999984 35556666643 3345559
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCceEEEee
Q 047651 536 RSKLVLELKKIFEELGIRYNLLPQEVRVSY 565 (568)
Q Consensus 536 R~~~~~~L~~~l~elgI~y~lP~q~V~v~~ 565 (568)
|+++...|.+-|+|.||+.++|+.+|++++
T Consensus 783 ~~~l~~~I~~~fre~gI~ipfpq~~v~l~~ 812 (835)
T COG3264 783 RSELNRAILDRFRENGIEIPFPQREVRLKN 812 (835)
T ss_pred HHHHHHHHHHHHHHcCCCCCCchHheEecC
Confidence 999999999999999999999999999997
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.50 E-value=0.00014 Score=71.21 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhHHHHHhh
Q 047651 319 SEAKNLADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDRETLKRS 392 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ERk~L~~S 392 (568)
..+...|+++|+.+...+.++|+.+||...+. .+|.++.+|.++|.|+||.||++||.+.+..+|.-=......
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 34679999999999999999999999887773 556699999999999999999999999999999876664444
Q ss_pred ccchhHHHHHHHHH
Q 047651 393 LNDAKTAIEELNRI 406 (568)
Q Consensus 393 L~D~~sav~~Ld~i 406 (568)
.+.++.-...+++
T Consensus 140 -~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 140 -EDEETPEERVDKI 152 (193)
T ss_pred -cccccHHHHHHHH
Confidence 5566666666654
No 10
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.06 E-value=0.00065 Score=46.13 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
+++++|+.||.|+||.||.+||+..+.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3789999999999999999999987754
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.00 E-value=0.00079 Score=53.58 Aligned_cols=54 Identities=20% Similarity=0.506 Sum_probs=45.6
Q ss_pred HHHhhhccCCCCcccchhhHhcccC------Ch----HHHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLN------NE----QHVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~------~e----e~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
+++|..+...+.++|+.+||..++. .+ +.++.+|..+|.|++|.||.+||.+.+
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6789999999999999999998873 12 236666999999999999999998764
No 12
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=96.93 E-value=0.0013 Score=62.37 Aligned_cols=60 Identities=12% Similarity=0.360 Sum_probs=53.4
Q ss_pred HHHHHHHhhhccCCCCcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 322 KNLADKIIKNLETPQSKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 322 ~~lAr~If~~~~~~g~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
.+.+.+++..+.. |.++|+.++|..+++ ++|+..+||++||.|++|.|+..+|+.++.+.
T Consensus 55 ~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 55 EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh
Confidence 5788999999988 899999999998884 46679999999999999999999999998844
No 13
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.78 E-value=0.0029 Score=49.96 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=49.3
Q ss_pred HHHhhhccCCCCcccchhhHhccc---C-ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFL---N-NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f---~-~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
+++|..+..++.++|+.+++..+| + ++++++++|..+|.+++|.|+.+||...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 467888888889999999999887 2 344599999999999999999999988876654
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.62 E-value=0.0071 Score=52.01 Aligned_cols=66 Identities=8% Similarity=0.159 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhccC-CCCcccchhhHhcccCC-------h-HHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 319 SEAKNLADKIIKNLET-PQSKFIEKEQLKRFLNN-------E-QHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~-~g~~~i~~eDl~~~f~~-------e-e~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
.+|..--+.+|+.+++ .|.++|+.++|..++.+ + +++++.|+.+|.|++|.|+.+||...+..+-.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3466777889999999 89999999999987732 3 55999999999999999999999887766533
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.62 E-value=0.0066 Score=52.42 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhhcc-CCCCc-ccchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 319 SEAKNLADKIIKNLE-TPQSK-FIEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 319 ~~A~~lAr~If~~~~-~~g~~-~i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
..|-.-++++|..++ .+|.+ +|+.++|..++. ++++.++++.-+|.|++|.|+.+||...+..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456777888999999 45765 599999999983 23459999999999999999999998876554
No 16
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.62 E-value=0.0067 Score=52.40 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=55.0
Q ss_pred HHHHHHHhhhccCCCCcccchhhHhcccC----ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHh
Q 047651 322 KNLADKIIKNLETPQSKFIEKEQLKRFLN----NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYND 385 (568)
Q Consensus 322 ~~lAr~If~~~~~~g~~~i~~eDl~~~f~----~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~E 385 (568)
..-.+.+|..+...+.++|+.+++.++|. ++++++++|..+|.+++|.|+.+||...+..+++-
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999873 44559999999999999999999999888777654
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.47 E-value=0.0049 Score=47.17 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=36.9
Q ss_pred CcccchhhHhccc-------CChHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 337 SKFIEKEQLKRFL-------NNEQHVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 337 ~~~i~~eDl~~~f-------~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
++.|+.++|..++ .++++++.+|..||.|++|.|+.+||...+.+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3568888888766 34566999999999999999999999987653
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.46 E-value=0.0059 Score=52.32 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=48.8
Q ss_pred HHHHhhhccC-CC-CcccchhhHhcccC---------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 325 ADKIIKNLET-PQ-SKFIEKEQLKRFLN---------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 325 Ar~If~~~~~-~g-~~~i~~eDl~~~f~---------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
-=.+|..++. .| .++|+.++|..++. +++++++.|+-+|.|++|.|+.+||...+.++
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3467888887 56 67999999999882 55679999999999999999999998877665
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.43 E-value=0.0076 Score=51.77 Aligned_cols=62 Identities=13% Similarity=0.261 Sum_probs=50.5
Q ss_pred HHHHHHHHhhh-ccCCCCc-ccchhhHhcccCCh-----------HHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 321 AKNLADKIIKN-LETPQSK-FIEKEQLKRFLNNE-----------QHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 321 A~~lAr~If~~-~~~~g~~-~i~~eDl~~~f~~e-----------e~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
|-..=..+|+. +.+.|.+ +|+.++|..++..+ ++++++++.+|.|++|.|+.+||...+..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 44445778888 4566654 99999999999543 459999999999999999999999888765
No 20
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.37 E-value=0.0097 Score=50.97 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcc-CCCCcc-cchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 320 EAKNLADKIIKNLE-TPQSKF-IEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 320 ~A~~lAr~If~~~~-~~g~~~-i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
.|..-.+++|..+. +.|.++ |+.++|..+|. ++++++++|+.+|.|++|.|+.++|...+..+
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45566788999997 888884 99999998873 35569999999999999999999998776554
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.30 E-value=0.011 Score=49.94 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhccC--CCCcccchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 320 EAKNLADKIIKNLET--PQSKFIEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 320 ~A~~lAr~If~~~~~--~g~~~i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
+...-.+..|..+.+ .|.++|+.++|..++. +++++++++..||.+++|.|+.++|...+...-+
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 344557889999998 7899999999998862 1556999999999999999999999998877643
No 22
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.08 E-value=0.012 Score=55.06 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=52.9
Q ss_pred HHHHHHhhhccCCCCcccchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDR 386 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ER 386 (568)
.-.+.++..+..+|...|..++|...+. .+++..+||.+||.|++|.||.+|++....+.+...
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~ 118 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL 118 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC
Confidence 4456677788888899999999998885 122599999999999999999999999998876543
No 23
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.98 E-value=0.02 Score=49.24 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhhccC-CC-CcccchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 319 SEAKNLADKIIKNLET-PQ-SKFIEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~-~g-~~~i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
..|..--+..|..+.. +| .++|+.++|..++. +++++++++..+|.+++|.|+.+||...+..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3456667788999986 76 58999999997653 4456999999999999999999999876654
No 24
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.83 E-value=0.021 Score=48.72 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhccCCC--CcccchhhHhcccC-------C----hHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 320 EAKNLADKIIKNLETPQ--SKFIEKEQLKRFLN-------N----EQHVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 320 ~A~~lAr~If~~~~~~g--~~~i~~eDl~~~f~-------~----ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
+|-.-.-++|+.++.++ ..+|+.++|..+|. + +++++++|..+|.+++|.|+.+||...+....
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45566678899998663 56999999998884 1 56699999999999999999999998877653
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.83 E-value=0.021 Score=42.96 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=45.1
Q ss_pred HHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
+.+|..+...+.+.|+.+|+..++. +++.+..+|..+|.+++|.|+.++|...+
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678888878888999999997772 44558899999999999999999997643
No 26
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.69 E-value=0.021 Score=61.96 Aligned_cols=65 Identities=12% Similarity=0.225 Sum_probs=57.8
Q ss_pred hhccCHHHHHHHHHHHhhhccCCCCcccchhhHhcccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 313 NEIKSESEAKNLADKIIKNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 313 ~~i~s~~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
..+++....+..++.+|+.+..+|.++|+.+|+.. ++..|..||.|++|.||.+||...+-..||
T Consensus 324 ~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 324 ARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 34666677889999999999999999999999852 678999999999999999999999999887
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.60 E-value=0.037 Score=50.00 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHhccc--CChHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 319 SEAKNLADKIIKNLETPQSKFIEKEQLKRFL--NNEQHVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f--~~ee~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
...+.-++-.|..+...+.++|+.++|..+. +.++.+...|..+|.|++|.||.+|+...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456778899999999999999999999873 345568899999999999999999999877
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.41 E-value=0.025 Score=55.25 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhccCCCCcc-cchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 321 AKNLADKIIKNLETPQSKF-IEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 321 A~~lAr~If~~~~~~g~~~-i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
.--++.||+..+...+.+. |.+++|.+.+. .++..+=||+++|.+++|.|+++|+...|.....
T Consensus 64 ~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 64 LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 3468899999998877666 99999998884 3335888999999999999999999999988765
No 29
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.35 E-value=0.018 Score=39.25 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
.+++|+.||.|+||.|+.+||...+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 57899999999999999999999876
No 30
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.33 E-value=0.016 Score=37.88 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHhhCCCCCCCccHHHHHHH
Q 047651 356 KKLLKLFGAVKSGKIDKADFKKW 378 (568)
Q Consensus 356 ~~af~~fD~d~nG~Is~~e~~~~ 378 (568)
+++|..+|.|++|.||.+||...
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 56899999999999999999874
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.31 E-value=0.044 Score=46.92 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhcc-CCCCc-ccchhhHhcccC-----------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 320 EAKNLADKIIKNLE-TPQSK-FIEKEQLKRFLN-----------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 320 ~A~~lAr~If~~~~-~~g~~-~i~~eDl~~~f~-----------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
.|-.--+.+|..++ +.|.+ +|+.++|...|. +++++++.++..|+|++|.|+.+||...+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45566788999997 67888 599999987764 34569999999999999999999998877654
No 32
>PTZ00184 calmodulin; Provisional
Probab=95.16 E-value=0.046 Score=49.53 Aligned_cols=58 Identities=16% Similarity=0.324 Sum_probs=45.2
Q ss_pred HHHHHHhhhccCCCCcccchhhHhccc------CChHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFL------NNEQHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f------~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
..++.+|+.+...|.++|+.+++..++ .++++++++|..+|.+++|.|+.+||...+.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 456788888888888888888888766 1445588888888888888899888876543
No 33
>PLN02964 phosphatidylserine decarboxylase
Probab=94.98 E-value=0.047 Score=62.58 Aligned_cols=60 Identities=8% Similarity=0.185 Sum_probs=52.3
Q ss_pred HHHHHHHhhhccCCCCcccchhhHhccc------CChHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 322 KNLADKIIKNLETPQSKFIEKEQLKRFL------NNEQHVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 322 ~~lAr~If~~~~~~g~~~i~~eDl~~~f------~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
...++++|..+..+|.+.|+.++|..++ .++++.+++|+.||.|++|.||.+||+..+..
T Consensus 178 ~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 178 RSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 3568999999998999999999998766 24566999999999999999999999987766
No 34
>PTZ00183 centrin; Provisional
Probab=94.80 E-value=0.056 Score=49.76 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=47.3
Q ss_pred HHHHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
...+.+|..+..++.++|+.++|..++. ++++++++|..||.+++|.|+.++|...+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 3457889999888888999999987752 344589999999999999999999977654
No 35
>PTZ00184 calmodulin; Provisional
Probab=94.78 E-value=0.054 Score=49.06 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=50.6
Q ss_pred HHHHHHhhhccCCCCcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
...+++|..+..++.+.|+.+++..++. .++.++.+|..+|.+++|.|+++++...+..+
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 3568889988888888999999997664 23458999999999999999999999988764
No 36
>PTZ00183 centrin; Provisional
Probab=94.70 E-value=0.043 Score=50.49 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=49.9
Q ss_pred HHHHHHhhhccCCCCcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
.....+|..+...+.+.|+.++|...+. .++..+++|+.+|.+++|.|+.+||...+...
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3567888888888888899999976652 34458899999999999999999999999765
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.05 Score=51.49 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=48.7
Q ss_pred HHhhhccCCCCcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 327 KIIKNLETPQSKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 327 ~If~~~~~~g~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
++-.-+.++|...|+.+||.+.+. +.|++..+|.+||-|++|+||..+|+....+..-
T Consensus 73 kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 73 KLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 355566778889999999999863 5556999999999999999999999988877654
No 38
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.43 E-value=0.058 Score=50.41 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHHHHhhhccCCCCcccchhhHhccc------CChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhHHHHHhhccch
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFL------NNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDRETLKRSLNDA 396 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f------~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~ 396 (568)
.--+.+|.-+...|..+|+.++|..++ +++++....++-+|.|++|.|+.+||...+.....+......+-...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el 87 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEEL 87 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHH
Confidence 345788999999999999999998777 36677999999999999999999999999888776654443222233
Q ss_pred hHHHHHHH
Q 047651 397 KTAIEELN 404 (568)
Q Consensus 397 ~sav~~Ld 404 (568)
..|.+.+|
T Consensus 88 ~eaF~~fD 95 (151)
T KOG0027|consen 88 KEAFRVFD 95 (151)
T ss_pred HHHHHHHc
Confidence 44444444
No 39
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=93.74 E-value=0.089 Score=50.13 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=48.2
Q ss_pred HHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
-+.-|+-|..++..+|..+++.+++. ++|++++.+..+|.|++|.|+.++|+..+.
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 34556777789999999999999995 556699999999999999999999998764
No 40
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.47 E-value=0.17 Score=40.02 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHHHHh
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVTKVYND 385 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv~iy~E 385 (568)
.+++|..||.|++|.||.+|+..++......
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~ 32 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRD 32 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccc
Confidence 5789999999999999999999999988643
No 41
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=91.32 E-value=0.2 Score=31.37 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
.+++|+.+|.+++|.|+.+++...+.+
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 568999999999999999999887653
No 42
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=88.16 E-value=1 Score=39.87 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=48.6
Q ss_pred HHHHhhhccCCCCcccchhhHhcccC----ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFLN----NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f~----~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
=+.+|..+. ++.++|+-++...+|. +.+....++.+-|.|.+|.++++||.-++-=+++
T Consensus 12 y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 12 YDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHH
Confidence 367899876 6778999999999984 4455999999999999999999999988776654
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=88.14 E-value=0.65 Score=39.60 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=24.8
Q ss_pred HHHHHHHhhC-CCCCC-CccHHHHHHHHHH
Q 047651 354 HVKKLLKLFG-AVKSG-KIDKADFKKWVTK 381 (568)
Q Consensus 354 ~a~~af~~fD-~d~nG-~Is~~e~~~~vv~ 381 (568)
...++|.+|| .|++| .|+.+|++..+..
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHH
Confidence 4889999997 99999 5999999999864
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=88.14 E-value=0.58 Score=40.30 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=24.3
Q ss_pred HHHHHHhhC-CCCCC-CccHHHHHHHHHHH
Q 047651 355 VKKLLKLFG-AVKSG-KIDKADFKKWVTKV 382 (568)
Q Consensus 355 a~~af~~fD-~d~nG-~Is~~e~~~~vv~i 382 (568)
+.++|..|| .|++| .||.+||+..+...
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 678899999 78998 59999999988663
No 45
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=87.81 E-value=2.3 Score=36.86 Aligned_cols=60 Identities=12% Similarity=0.335 Sum_probs=45.3
Q ss_pred HHHHHHHhhhccCCCCcccchhhHhccc--------C---ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 322 KNLADKIIKNLETPQSKFIEKEQLKRFL--------N---NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 322 ~~lAr~If~~~~~~g~~~i~~eDl~~~f--------~---~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
-..--.+|+.++. +.++|+..+|...+ + +++.++++|+-+|.++||.|+.+||..-|..+
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3334457888873 34478888887666 2 35568999999999999999999998877654
No 46
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.79 E-value=0.65 Score=36.29 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=23.8
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 356 KKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 356 ~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
+++|..+|.|++|.|+.+|+.......
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 468999999999999999999887653
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=86.77 E-value=0.92 Score=38.87 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHhhCC-CC-CCCccHHHHHHHHHH
Q 047651 355 VKKLLKLFGA-VK-SGKIDKADFKKWVTK 381 (568)
Q Consensus 355 a~~af~~fD~-d~-nG~Is~~e~~~~vv~ 381 (568)
..++|..||. |+ +|.||.+|++..+..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHH
Confidence 6789999997 97 699999999998875
No 48
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=85.54 E-value=1.1 Score=43.81 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhccCC-CCcccchhhHhcccC---ChHHHHHHHHhhCCCCCCC-ccHHHHHHHHHHH
Q 047651 319 SEAKNLADKIIKNLETP-QSKFIEKEQLKRFLN---NEQHVKKLLKLFGAVKSGK-IDKADFKKWVTKV 382 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~~-g~~~i~~eDl~~~f~---~ee~a~~af~~fD~d~nG~-Is~~e~~~~vv~i 382 (568)
.|..+ ....|+++..+ ++++++.++|..+.. ++- ++.++..||.+++|+ |+.++|.+.+--.
T Consensus 30 ~EI~~-L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~-~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 30 NEIER-LYERFKKLDRNNGDGYLTKEEFLSIPELALNPL-ADRIIDRFDTDGNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred HHHHH-HHHHHHHhccccccCccCHHHHHHHHHHhcCcH-HHHHHHHHhccCCCCccCHHHHHHHHhhh
Confidence 34444 46779999999 899999999998774 555 899999999999999 9999999987643
No 49
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=84.83 E-value=2.5 Score=42.20 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHh
Q 047651 319 SEAKNLADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYND 385 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~E 385 (568)
+..-+-=|.+|+.+.++++..|...+|...|. +++--+.+++-||.-++|+|..++|.+.|+...+-
T Consensus 120 w~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~l 192 (221)
T KOG0037|consen 120 WKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRL 192 (221)
T ss_pred HHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHH
Confidence 55555567889999999999999999988774 66667888899998889999999999999887664
No 50
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=84.66 E-value=1.2 Score=38.23 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHhhCC-CCCCCccHHHHHHHHHH-HH
Q 047651 355 VKKLLKLFGA-VKSGKIDKADFKKWVTK-VY 383 (568)
Q Consensus 355 a~~af~~fD~-d~nG~Is~~e~~~~vv~-iy 383 (568)
..++|..||+ |++|.|+.+||+..+.+ ..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg 40 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLP 40 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhh
Confidence 6789999999 99999999999999987 54
No 51
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=84.11 E-value=0.31 Score=52.84 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=34.1
Q ss_pred HHhhhccCCCCcccchhhHhcc---cC-ChHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 327 KIIKNLETPQSKFIEKEQLKRF---LN-NEQHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 327 ~If~~~~~~g~~~i~~eDl~~~---f~-~ee~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
.||+.+...| -|+..|-.-. +. ++...+-||++||.||||+|+++||...+.
T Consensus 205 siF~~lg~~G--LIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 205 SIFYKLGESG--LISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred eeEEEcCCCC--eeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 3555554433 3444443322 22 233378899999999999999999998763
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=83.32 E-value=1.4 Score=37.01 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHHHHHhhCC--CCCCCccHHHHHHHHHH
Q 047651 354 HVKKLLKLFGA--VKSGKIDKADFKKWVTK 381 (568)
Q Consensus 354 ~a~~af~~fD~--d~nG~Is~~e~~~~vv~ 381 (568)
++.++|..||. |++|.|+.+|+...+..
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 47889999999 89999999999988865
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=83.29 E-value=2.1 Score=34.84 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=43.6
Q ss_pred HhhhccCCCCcccchhhHhccc-------CChHHHHHHHHhhCCCCC-CCccHHHHHHHHHH
Q 047651 328 IIKNLETPQSKFIEKEQLKRFL-------NNEQHVKKLLKLFGAVKS-GKIDKADFKKWVTK 381 (568)
Q Consensus 328 If~~~~~~g~~~i~~eDl~~~f-------~~ee~a~~af~~fD~d~n-G~Is~~e~~~~vv~ 381 (568)
.|.-|...+.+.+...+|..++ |+|++.+...+.+|+++. |.|+++.|.....+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4666677778888888888776 466679999999999988 99999999876544
No 54
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.65 E-value=1.7 Score=42.77 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=41.4
Q ss_pred HHHHHHhhhccCCC-CcccchhhHhccc----C---ChHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQ-SKFIEKEQLKRFL----N---NEQHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 323 ~lAr~If~~~~~~g-~~~i~~eDl~~~f----~---~ee~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
+--+..|++|...- ...++.+++..++ | .+.-|+.+|+.||.|+||.|+.+||..++-
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als 91 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALS 91 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 44466788876532 4457888777554 4 233489999999999999999999665543
No 55
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=82.39 E-value=1.2 Score=41.81 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=52.3
Q ss_pred HHHHHHhhhccCCCCcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
-.-+||-.-|..+|++.++++||...|+ .+=.|.-||+++|-|+++-|-.+++...+...-+
T Consensus 71 pfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 71 PFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred hHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh
Confidence 4567888888899999999999998774 3445888999999999999999999999887654
No 56
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.08 E-value=1.7 Score=37.11 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=24.4
Q ss_pred HHHHHHhhC-CCCCC-CccHHHHHHHHHH
Q 047651 355 VKKLLKLFG-AVKSG-KIDKADFKKWVTK 381 (568)
Q Consensus 355 a~~af~~fD-~d~nG-~Is~~e~~~~vv~ 381 (568)
..++|..|| .|++| .|+.+|++..+..
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 678999998 79999 5999999999876
No 57
>PLN02964 phosphatidylserine decarboxylase
Probab=81.79 E-value=2.2 Score=49.20 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred HHHHhhhccCCCCcccchhhHhccc----CChHH---HHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFL----NNEQH---VKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f----~~ee~---a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
-++.|..+++++...+ +..+.+-+ +++++ ++++|+.+|.|++|.|+.+||...+....
T Consensus 145 lkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 145 ACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 3666999988877665 55555533 34443 68999999999999999999999887643
No 58
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=81.71 E-value=1.4 Score=37.85 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
...++|..||.|++|.|+.+|++..+..
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 3788999999999999999999998764
No 59
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=80.14 E-value=1.2 Score=37.15 Aligned_cols=54 Identities=19% Similarity=0.575 Sum_probs=43.5
Q ss_pred HHHhhhccCCCCcccchhhHhcccC--------ChHHHHHHHHhhCCC----CCCCccHHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLN--------NEQHVKKLLKLFGAV----KSGKIDKADFKKWVT 380 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~--------~ee~a~~af~~fD~d----~nG~Is~~e~~~~vv 380 (568)
+.||.+++. +..+++.++|.+||. +++.+++.+.-|.++ ..+.+|.++|...+.
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 578999977 788999999999993 345588888888766 478899998887764
No 60
>PRK11281 hypothetical protein; Provisional
Probab=79.90 E-value=2.8 Score=51.37 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=65.3
Q ss_pred ccccccccchHHHHHHhhhhHHHHHHHHHHHHHHHHHH--HhccccCCCceEeee-------------hhhHHHHHHHHH
Q 047651 57 EEEEEEKEDQDIIVGKIKEVSLMLELIMFVSIMWLLIA--SLTLKRLQNHVIWDL-------------ELWKWCLLALVI 121 (568)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~v~~~~~L~~--~~~i~~~~~~~i~~~-------------~lw~w~~~~~v~ 121 (568)
++.|+|.=+..++.+..++.-.+++|+++++.+-.++. .+.++-+.+.++|+. .+..-...+.++
T Consensus 767 ~~~ee~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl 846 (1113)
T PRK11281 767 EPVEEPTLALEQVNQQSLRLTDLLLFALFFVMFYWVWSDLITVFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIIL 846 (1113)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhccccccccceeeeeHHHHHHHHHHH
Confidence 34456667777787777776666676666654433331 112344445565543 445555555667
Q ss_pred HHHhHHHhhhhheeeeeEeecccchhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 047651 122 LSGPLLSRCFISVIVFLVEKKFMLKHLVLYFVYGLRTSVSVFIWLTCVLLVWIF 175 (568)
Q Consensus 122 w~g~lva~~~~~~~~~~~~~~~~~~kk~l~~~~~l~~~~~~~~W~~~~l~~~~~ 175 (568)
++|+++++++++++.-+............|+ +..-+..++|++.+++++..
T Consensus 847 ~i~~~l~r~l~~ll~~~~~~rl~l~~~~~~~---i~~li~y~I~~i~iliaL~~ 897 (1113)
T PRK11281 847 VVTYVLVRNLPGLLEVLVLSRLNLRQGTSYA---ITTLLTYIIIAVGAVTAFST 897 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCchHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 7888888888776543322222222223333 45666667777777766654
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=77.04 E-value=3.1 Score=30.71 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
...+|..+|.+++|.|+.+++...+...+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 56789999999999999999999887653
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=74.55 E-value=3.5 Score=37.25 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHH
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKW 378 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~ 378 (568)
.+..+|..+|.|+||.||++|+...
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~ 73 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHH
Confidence 3999999999999999999999964
No 63
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=73.02 E-value=4.3 Score=38.53 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=33.4
Q ss_pred CcccchhhHhcccC-------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 337 SKFIEKEQLKRFLN-------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 337 ~~~i~~eDl~~~f~-------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
.+.|.+--|.-.|+ +|+....||+.||.++.|.|..+.|+.++..
T Consensus 78 ~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 78 PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 33565555555553 4556888999999999999999999888776
No 64
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=72.87 E-value=5.2 Score=35.86 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhHhcccC----ChHHHHHHHHhhCCCCCCCccHHHHHH
Q 047651 319 SEAKNLADKIIKNLETPQSKFIEKEQLKRFLN----NEQHVKKLLKLFGAVKSGKIDKADFKK 377 (568)
Q Consensus 319 ~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~----~ee~a~~af~~fD~d~nG~Is~~e~~~ 377 (568)
.+-+..+.-.|..+...+.++|...++..+.. .+..+...|..=|.|+||.||.+|...
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34467889999999999999999988887653 555688999999999999999999753
No 65
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=72.56 E-value=3.1 Score=39.47 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=44.8
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDRETLKRSLNDAKTAIEELNRILSAIVIVLIIIVWLLVMG 424 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~~sav~~Ld~il~~iv~ii~iii~L~i~g 424 (568)
+.++||.+.|.+++|-|.++++++..-.+++. ---..||.++.=.-..|-+-++|.++|
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~------------~~d~elDaM~~Ea~gPINft~FLTmfG 91 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI------------ASDEELDAMMKEAPGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCC------------CCHHHHHHHHHhCCCCeeHHHHHHHHH
Confidence 37899999999999999999999988776552 122467777776666666667777665
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=69.94 E-value=6.5 Score=42.74 Aligned_cols=56 Identities=13% Similarity=0.324 Sum_probs=38.0
Q ss_pred HHHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 324 LADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 324 lAr~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
=-.++|.+...+....|..+++.+++. ++|+|++.|+--|+|+++.|+.+|..+-.
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 345677777666666677777777663 44557777777777777777777776643
No 67
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=68.02 E-value=6.4 Score=39.32 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred hhccCCCCcccchhhHhcccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 330 KNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 330 ~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
.=|.++....|..++|......=..=+++|.-||.|+.|.|+..||++++...+
T Consensus 101 ~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 101 SMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLG 154 (221)
T ss_pred HHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcC
Confidence 334567777899999988887444458899999999999999999999988764
No 68
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=64.06 E-value=10 Score=29.38 Aligned_cols=31 Identities=13% Similarity=0.497 Sum_probs=24.9
Q ss_pred ChHHHHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 351 NEQHVKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 351 ~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
+++-|..+|..-|.+++|.+..+||+..+..
T Consensus 19 ~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 19 DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp -HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4555999999999999999999999876643
No 69
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=62.19 E-value=1.9e+02 Score=30.20 Aligned_cols=106 Identities=16% Similarity=0.256 Sum_probs=57.8
Q ss_pred ehhhHHHHHHHHHHHHhHHHhhhhheeeeeEeecccchhhHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHhCCCCccCCC
Q 047651 109 LELWKWCLLALVILSGPLLSRCFISVIVFLVEKKFMLKHLVLYFVYGLRTSVSVFIWL-TCVLLVWIFLFDDGYGVKGSK 187 (568)
Q Consensus 109 ~~lw~w~~~~~v~w~g~lva~~~~~~~~~~~~~~~~~~kk~l~~~~~l~~~~~~~~W~-~~~l~~~~~l~~~~~~~~~~~ 187 (568)
.-+|-|.-.++.+..|.+ |+..+|+ +- +-++ .+|. =++=.++...-... .
T Consensus 131 ~~vw~wl~~~ls~lfg~i---wVlPiF~--------lS-----------kiV~-alWF~DIa~aa~rv~k~~P------~ 181 (360)
T KOG3966|consen 131 NVVWGWLHPILSLLFGYI---WVLPIFF--------LS-----------KIVQ-ALWFSDIAGAAMRVLKLPP------P 181 (360)
T ss_pred cchHhhhhHHHHHHHHHH---HHHHHHH--------HH-----------HHHH-HHHHHHHHHHHHHHhcCCC------C
Confidence 367888777777777765 6655544 11 2222 2332 22223333332221 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHhccc
Q 047651 188 ETSKIFQHVTRTLASFVAGAAVWFVKTLSVKLISVSFQSKRFFHRIHEAIFHQHVLQVLSAAQ 250 (568)
Q Consensus 188 ~~~~~~~~v~kvL~~~~v~s~~~l~ekiliq~ia~sFH~~~y~dRI~es~~~~~~L~~L~~~~ 250 (568)
.....-+.+...|++.++- +++|+.-.++|++-+.+--.. -+.-+.-+|..||..+
T Consensus 182 p~p~~Sk~~Ad~Lfs~l~Q-~lFLiQgMlv~l~Pi~lVg~~------i~~lHm~LLySlYcFe 237 (360)
T KOG3966|consen 182 PVPPFSKMLADTLFSALHQ-ILFLIQGMLVQLLPIPLVGPV------IVYLHMALLYSLYCFE 237 (360)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhcChhhcchH------HHHHHHHHHHHHHHHh
Confidence 1223334455555555443 568899999999887765443 2445666777887643
No 70
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.01 E-value=10 Score=39.94 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHhhhccCCCCcccchhhHhcccCChH-------HHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLNNEQ-------HVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~~ee-------~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
++-|+.-...|...+++|.|..|+-+|+ -..+.+.=.|.|++|.|+.+|+..-.-+-+
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 4567776778889999999999997665 266777889999999999999987655444
No 71
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.84 E-value=44 Score=41.30 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=60.8
Q ss_pred cccccchHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHhccc---cCCCceEeee-------------hhhHHHHHHHHH
Q 047651 60 EEEKEDQDIIVGKIKEVSLMLELIMFVSIMWLL--IASLTLK---RLQNHVIWDL-------------ELWKWCLLALVI 121 (568)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~r~~~~v~~~~~L--~~~~~i~---~~~~~~i~~~-------------~lw~w~~~~~v~ 121 (568)
|+|.=++..+=.- ...++|-+++++-++++ +++.+++ -+.++++|.. .+..-.+.++++
T Consensus 767 eep~ldl~~Is~Q---slrL~r~~l~l~~l~~l~~iWsd~~~a~s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIl 843 (1109)
T PRK10929 767 EEPVIDLDAISAQ---SLRLVRSILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLGSVLIAILVF 843 (1109)
T ss_pred CCCccCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeEEeeeceeccccceeeeeHHHHHHHHHHH
Confidence 3444444444333 34556665555555533 4555554 4558888863 456666667778
Q ss_pred HHHhHHHhhhhheeeeeEeecccchhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 047651 122 LSGPLLSRCFISVIVFLVEKKFMLKHLVLYFVYGLRTSVSVFIWLTCVLLVWIF 175 (568)
Q Consensus 122 w~g~lva~~~~~~~~~~~~~~~~~~kk~l~~~~~l~~~~~~~~W~~~~l~~~~~ 175 (568)
++|+++++++++++.-.+...........|+ +..-+..++|++..++++..
T Consensus 844 iv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~I~~ig~l~~L~~ 894 (1109)
T PRK10929 844 IITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYLLMLIGGLVGFSM 894 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8999999999887753322111111222333 33445556666665555444
No 72
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=52.86 E-value=35 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCCccHHHHHHHHHHHHHhHHHHHhhccchhHHHHHHHHHHHHH
Q 047651 367 SGKIDKADFKKWVTKVYNDRETLKRSLNDAKTAIEELNRILSAI 410 (568)
Q Consensus 367 nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~~sav~~Ld~il~~i 410 (568)
+|.||-++|.+...+.++-.+.....++|.+.+-..|+.++..+
T Consensus 14 ~~~IsA~~Fse~y~e~wk~Er~~~~~~~d~~~l~~~l~~lF~~a 57 (88)
T PF09204_consen 14 NGEISADEFSEAYIELWKIERDSGYLLKDDEKLFECLSSLFCAA 57 (88)
T ss_dssp TTSS-HHHHHHHHH----HHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999876543
No 73
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=52.78 E-value=24 Score=33.80 Aligned_cols=58 Identities=14% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHHHhhhccCCCCcccchhhHhcccC------ChHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 322 KNLADKIIKNLETPQSKFIEKEQLKRFLN------NEQHVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 322 ~~lAr~If~~~~~~g~~~i~~eDl~~~f~------~ee~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
+-=.++-|+-+..++..-|++.+|+++.. ++++.++...-+|.|++|.|+.+||...+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 33445566666667777899999998874 34558888899999999999999996543
No 74
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=51.79 E-value=55 Score=35.87 Aligned_cols=72 Identities=13% Similarity=0.331 Sum_probs=56.6
Q ss_pred hccCHHHHHHHHHHHhhhccCCCCcccchhhHhcccCChH-HHHHHHHhhCCCCCCCccHHHHHHHHHHHHHh
Q 047651 314 EIKSESEAKNLADKIIKNLETPQSKFIEKEQLKRFLNNEQ-HVKKLLKLFGAVKSGKIDKADFKKWVTKVYND 385 (568)
Q Consensus 314 ~i~s~~~A~~lAr~If~~~~~~g~~~i~~eDl~~~f~~ee-~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~E 385 (568)
.+..++.-..+|+.+|.-...+...-+..+||.+++.+.| +.-+.|.-+|.+.||+|..+|+.+.+..+.-+
T Consensus 42 ~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 42 KLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred hcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc
Confidence 4444444467788999888777777899999999997443 46678888999999999999999988887654
No 75
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=50.06 E-value=18 Score=34.22 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=41.9
Q ss_pred HHHHhhhccCCCCcccchhhHhcccC--------ChH---HHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFLN--------NEQ---HVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f~--------~ee---~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
|++-|+-+.-++.++|-.+||+.-+. .+| -++++..--|.||+|+++..||+..+.+.
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 34444444558888999999987663 222 24566677788999999999999988653
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=49.55 E-value=10 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.9
Q ss_pred HHHhhhccCCCCcccchhhHhcccC
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLN 350 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~ 350 (568)
+.+|+.+..++..+|+.+||..++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 5789999999999999999987763
No 77
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=46.99 E-value=22 Score=39.90 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=45.0
Q ss_pred HhhhccCCCCcccchhhHhcccC---------ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 328 IIKNLETPQSKFIEKEQLKRFLN---------NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 328 If~~~~~~g~~~i~~eDl~~~f~---------~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
=|.++. .+..+++..|+.+.|. .+|+++++..-.+.|.+|+++.|||...+.++
T Consensus 24 kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 24 KFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 367766 7888999999998884 24559999999999999999999999866654
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=46.75 E-value=23 Score=38.72 Aligned_cols=24 Identities=13% Similarity=0.409 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHH
Q 047651 353 QHVKKLLKLFGAVKSGKIDKADFK 376 (568)
Q Consensus 353 e~a~~af~~fD~d~nG~Is~~e~~ 376 (568)
+.++.+|+++|.|+||.|+.+||.
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHH
Confidence 348999999999999999999994
No 79
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=46.38 E-value=14 Score=24.83 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHhhhccCCCCcccchhhHhccc
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFL 349 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f 349 (568)
.+.+|+.+.++|.++|+.++|...+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 3678999999999999999998765
No 80
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=45.23 E-value=16 Score=31.15 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=23.0
Q ss_pred HHHHHHhhCC-CC-CCCccHHHHHHHHHH
Q 047651 355 VKKLLKLFGA-VK-SGKIDKADFKKWVTK 381 (568)
Q Consensus 355 a~~af~~fD~-d~-nG~Is~~e~~~~vv~ 381 (568)
.-++|..+|+ ++ +|.|+.+||+..+.+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 4578999998 67 899999999998864
No 81
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=39.07 E-value=8.2 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCCcccchhhHhcccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 335 PQSKFIEKEQLKRFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 335 ~g~~~i~~eDl~~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
..+.||+++|+.......+ -|.+.|.--..|||+.-+.+.+.+-
T Consensus 15 ~~s~YiTL~di~~lV~~g~----~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 15 ETSSYITLEDIAQLVREGE----DFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred CCceeEeHHHHHHHHHCCC----eEEEEECCCCcccHHHHHHHHHHHH
Confidence 4578999999999988665 5788887766799999988877663
No 82
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=38.28 E-value=27 Score=38.42 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHH
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVTK 381 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv~ 381 (568)
.+.+|+.+|.|..|.||.+||+.++.=
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l 575 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKL 575 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHH
Confidence 678999999999999999999998753
No 83
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=37.40 E-value=3.3e+02 Score=30.76 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHh
Q 047651 155 GLRTSVSVFIWLTCVLLVWIFLFD 178 (568)
Q Consensus 155 ~l~~~~~~~~W~~~~l~~~~~l~~ 178 (568)
|-|+.+++.+-++..+++...++.
T Consensus 164 ~gErs~~l~~gf~~fl~am~vliv 187 (486)
T PF10268_consen 164 GGERSVCLAFGFFFFLLAMFVLIV 187 (486)
T ss_pred CcceehhHHHHHHHHHHHHHHhhc
Confidence 446777766655555555555553
No 84
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=36.26 E-value=28 Score=28.59 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred HhhhccCCCCcccchhhHhcccCChHHHHHHHHhhC
Q 047651 328 IIKNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLFG 363 (568)
Q Consensus 328 If~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~fD 363 (568)
-|+.+ ..|+.|||.+||.+.|++++ |+-+-+...
T Consensus 11 aFr~l-A~~KpyVT~~dLr~~l~pe~-aey~~~~Mp 44 (69)
T PF08726_consen 11 AFRAL-AGGKPYVTEEDLRRSLTPEQ-AEYCISRMP 44 (69)
T ss_dssp HHHHH-CTSSSCEEHHHHHHHS-CCC-HHHHHCCSE
T ss_pred HHHHH-HcCCCcccHHHHHHHcCcHH-HHHHHHHCc
Confidence 45555 47889999999999999988 766665433
No 85
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=34.41 E-value=54 Score=36.37 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhccCCCCcccchhhHhc---------------------ccCChHHHHHH---HHhhCCCCCCCccHH
Q 047651 318 ESEAKNLADKIIKNLETPQSKFIEKEQLKR---------------------FLNNEQHVKKL---LKLFGAVKSGKIDKA 373 (568)
Q Consensus 318 ~~~A~~lAr~If~~~~~~g~~~i~~eDl~~---------------------~f~~ee~a~~a---f~~fD~d~nG~Is~~ 373 (568)
+.-|..+-+|||..+.+.+++.|+..++.+ +|.-+. +... |--+|.|.+|-|+++
T Consensus 220 ~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~-f~viy~kFweLD~Dhd~lidk~ 298 (493)
T KOG2562|consen 220 ERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEH-FYVIYCKFWELDTDHDGLIDKE 298 (493)
T ss_pred HHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHH-HHHHHHHHhhhccccccccCHH
Confidence 345778889999999988888777766652 222222 4455 556899999999999
Q ss_pred HHHHHHHHHHHh
Q 047651 374 DFKKWVTKVYND 385 (568)
Q Consensus 374 e~~~~vv~iy~E 385 (568)
++..-..++..+
T Consensus 299 ~L~ry~d~tlt~ 310 (493)
T KOG2562|consen 299 DLKRYGDHTLTE 310 (493)
T ss_pred HHHHHhccchhh
Confidence 999877766554
No 86
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=33.38 E-value=1.9e+02 Score=33.09 Aligned_cols=31 Identities=13% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHhh---hh-HHHHHHHHHHHHHHHHHHHhc
Q 047651 67 DIIVGKIK---EV-SLMLELIMFVSIMWLLIASLT 97 (568)
Q Consensus 67 ~~~~~~~~---~~-~~~~r~~~~v~~~~~L~~~~~ 97 (568)
+++|+.+- +| .++--.++|.+.++||+.+..
T Consensus 79 ~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~ 113 (654)
T KOG1419|consen 79 NKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVL 113 (654)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 44555443 46 666677888899999998763
No 87
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=32.27 E-value=49 Score=28.24 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=23.4
Q ss_pred HHHHHHh-hCCCCCC-CccHHHHHHHHHHHH
Q 047651 355 VKKLLKL-FGAVKSG-KIDKADFKKWVTKVY 383 (568)
Q Consensus 355 a~~af~~-fD~d~nG-~Is~~e~~~~vv~iy 383 (568)
...+|.. +|.|++| .||++||+..+..-+
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~ 41 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTEL 41 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhh
Confidence 4567877 8888876 999999998887653
No 88
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=31.72 E-value=81 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 047651 198 RTLASFVAGAAVWFVKTLSVKLISVSFQSKRFFHR 232 (568)
Q Consensus 198 kvL~~~~v~s~~~l~ekiliq~ia~sFH~~~y~dR 232 (568)
+.|..++++++++=.-|-.|+-+|..|-.+.|..+
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 45777888888888888888888888888887765
No 89
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=31.70 E-value=70 Score=30.08 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHHHHH
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKWVTKVYN 384 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ 384 (568)
+.-+-.+.||+++||.|.-.|++-.++..+.
T Consensus 89 dfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 89 DFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred HHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 3556677899999999999999887776553
No 90
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=29.93 E-value=66 Score=32.06 Aligned_cols=76 Identities=22% Similarity=0.386 Sum_probs=51.0
Q ss_pred HHHHHHhhhccCCCCcccchhhHhccc---CChH---HHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhHHHHHhhccch
Q 047651 323 NLADKIIKNLETPQSKFIEKEQLKRFL---NNEQ---HVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDRETLKRSLNDA 396 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~~i~~eDl~~~f---~~ee---~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~ 396 (568)
.-+..+|+.+...-..||.+..|+++| +.++ -.+..++-.|.|.+|+||.-||-.- | |++.+--|+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI----f--rkaaagEL~~- 171 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI----F--RKAAAGELQE- 171 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH----H--HHHhcccccc-
Confidence 446778888877777789988888887 3333 2566778889999999998877543 3 3555555544
Q ss_pred hHHHHHHHH
Q 047651 397 KTAIEELNR 405 (568)
Q Consensus 397 ~sav~~Ld~ 405 (568)
|+-...|-+
T Consensus 172 ds~~~~LAr 180 (244)
T KOG0041|consen 172 DSGLLRLAR 180 (244)
T ss_pred chHHHHHHH
Confidence 444444443
No 91
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=29.89 E-value=1.1e+02 Score=25.63 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=33.3
Q ss_pred HHHHHHhhhccCCCCc-------ccchhhHhcccCChH--HHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 323 NLADKIIKNLETPQSK-------FIEKEQLKRFLNNEQ--HVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 323 ~lAr~If~~~~~~g~~-------~i~~eDl~~~f~~ee--~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
.....|.+.++++|.= .+..+++...-+... -|.++++.|= .++|+.+++...|.+.|
T Consensus 13 sf~eAil~GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~---~~di~~~~L~~ii~~AY 79 (79)
T PF14821_consen 13 SFKEAILQGLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFL---GDDIPEEELKEIIEKAY 79 (79)
T ss_dssp -HHHHHHH-SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHC---CCCS-HHHHHHHHHHHT
T ss_pred CHHHHHHhCCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHC
Confidence 4455666777766543 355556666665443 3555555554 66899999999998876
No 92
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.91 E-value=27 Score=33.37 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=40.5
Q ss_pred HHHHHhhhccCCCCcccchhhHhcccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 324 LADKIIKNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 324 lAr~If~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
.-||+|+. .-+.|+++||+.....+-| =|.+-|.--+.|||+.-+.+-+.+-
T Consensus 16 aNRRLYnT---~TSTYVTL~dla~mVk~ge----dF~V~DAKsgeDiT~sVLtQIIfEe 67 (193)
T COG5394 16 ANRRLYNT---GTSTYVTLEDLAQMVKEGE----DFRVQDAKSGEDITHSVLTQIIFEE 67 (193)
T ss_pred ccchhccc---CCceeeeHHHHHHHHhcCC----ceEEeeccccchhhHHHHHHHHHHH
Confidence 34666665 3367999999998887655 4788898888899999988887763
No 93
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=26.34 E-value=9.4e+02 Score=28.75 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=39.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047651 152 FVYGLRTSVSVFIWLTCVLLVWIFLFDDGYGVKGSKETSKIFQHVTRTLASFVAGAAVWFVKTL 215 (568)
Q Consensus 152 ~~~~l~~~~~~~~W~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~v~kvL~~~~v~s~~~l~eki 215 (568)
.+..+| |+.+++|++..+.+|..+-.... . .+..-....+.+.+++..++++.+.|.+-+.
T Consensus 426 ~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~-~-~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 426 ALKTAR-ILTVCVAVMLLLNAWGLFDFWNW-L-QNGAGEKTVDILIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcchHhh-h-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667 89999999999999985321110 0 0111234566777788888888887777553
No 94
>COG5346 Predicted membrane protein [Function unknown]
Probab=26.07 E-value=5.2e+02 Score=23.79 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Q 047651 397 KTAIEELNRILSAIVIVLIIIVWLLVMGLLTYKVFAVVTSQLLLLAFMF 445 (568)
Q Consensus 397 ~sav~~Ld~il~~iv~ii~iii~L~i~gv~~~~~l~~lss~~la~sFIF 445 (568)
.....++.+++..+..+.. +.+++- .|.+-+++-+...+|++|+|
T Consensus 83 ~~~~~~~tril~liFgi~L---Vvsi~~-~tla~~~~Gtv~alAlaFv~ 127 (136)
T COG5346 83 GQLYAKLTRILLLIFGIFL---VVSIFP-KTLASLAGGTVFALALAFVI 127 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHccchHHHHHHHHHH
Confidence 4456777777655443332 111111 12223333344556677776
No 95
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=25.73 E-value=19 Score=32.07 Aligned_cols=50 Identities=4% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHhhhccCCCCcccchhhHhcccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 326 DKIIKNLETPQSKFIEKEQLKRFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 326 r~If~~~~~~g~~~i~~eDl~~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
||+|.. ..+.||++||+.......+ -|.+.|.--..|||++-+.+-+.+-
T Consensus 9 RRLYDT---~tS~YITLedi~~lV~~g~----~f~V~DakTgeDiT~~iL~QII~E~ 58 (107)
T TIGR01848 9 RRLYDT---ETSSYVTLEDIRDLVREGR----EFQVVDSKSGDDLTRSILLQIIAEE 58 (107)
T ss_pred CcccCC---CccceeeHHHHHHHHHCCC----eEEEEECCCCchhHHHHHHHHHHHH
Confidence 444544 4578999999999987655 5788887766699999998888875
No 96
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.65 E-value=4.1e+02 Score=25.37 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.3
Q ss_pred chhhHhcccCCh
Q 047651 341 EKEQLKRFLNNE 352 (568)
Q Consensus 341 ~~eDl~~~f~~e 352 (568)
+.||+..-++++
T Consensus 42 sEeeii~~LG~P 53 (181)
T PF08006_consen 42 SEEEIIAELGSP 53 (181)
T ss_pred CHHHHHHHcCCH
Confidence 334444444433
No 97
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.52 E-value=74 Score=26.21 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=36.6
Q ss_pred CCCcccchhhHh----cccCChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHHHhH
Q 047651 335 PQSKFIEKEQLK----RFLNNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVYNDR 386 (568)
Q Consensus 335 ~g~~~i~~eDl~----~~f~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ER 386 (568)
|.+..+.+..|. ..++.++ .+.....++.=..++||++||+..+..+--++
T Consensus 4 P~sp~~~F~~L~~~l~~~l~~~~-~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 4 PTSPWMPFPMLFSALSKHLPPSK-MDLLQKHYEEFKKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred CCCCcccHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 445555555544 4556555 77777888777899999999999998875543
No 98
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=25.48 E-value=73 Score=29.97 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.7
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHH
Q 047651 354 HVKKLLKLFGAVKSGKIDKADFKKWV 379 (568)
Q Consensus 354 ~a~~af~~fD~d~nG~Is~~e~~~~v 379 (568)
+.+++|.+||..++|+|+-...-+..
T Consensus 12 e~ke~F~lfD~~gD~ki~~~q~gdvl 37 (152)
T KOG0030|consen 12 EFKEAFLLFDRTGDGKISGSQVGDVL 37 (152)
T ss_pred HHHHHHHHHhccCcccccHHHHHHHH
Confidence 38999999999999999987766443
No 99
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=23.96 E-value=75 Score=32.54 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHhhhccCCCCcccchhhHhcccC--Ch-------HHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 047651 325 ADKIIKNLETPQSKFIEKEQLKRFLN--NE-------QHVKKLLKLFGAVKSGKIDKADFKKWVT 380 (568)
Q Consensus 325 Ar~If~~~~~~g~~~i~~eDl~~~f~--~e-------e~a~~af~~fD~d~nG~Is~~e~~~~vv 380 (568)
-.-||..+.......|+...+.+..- .+ ++.+..|...|+|++|.|+-+|++-...
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34456555555455565555544331 11 1245678889999999999999875543
No 100
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=23.55 E-value=1.4e+02 Score=24.21 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhccccCCCceEeeehhhHHHHHHHH
Q 047651 84 MFVSIMWLLIASLTLKRLQNHVIWDLELWKWCLLALV 120 (568)
Q Consensus 84 ~~v~~~~~L~~~~~i~~~~~~~i~~~~lw~w~~~~~v 120 (568)
+.++|+.+++..+-+-.-.+..++|+..+.|-.++++
T Consensus 3 ll~iP~l~~l~~~p~~nr~~P~v~G~Pff~~w~~~wv 39 (66)
T PF11755_consen 3 LLLIPFLALLWGPPFYNRVEPTVFGMPFFYWWQLAWV 39 (66)
T ss_pred hHHHHHHHHHHhHHHhccCCccccCcHHHHHHHHHHH
Confidence 3455665555553332223568899998766444444
No 101
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=23.43 E-value=3e+02 Score=20.62 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=34.4
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHhcCCCccCCcEEEEeecCCC
Q 047651 466 VEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWSGDHSVVVKDIEDV 511 (568)
Q Consensus 466 i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~p~~~v~v~~i~d~ 511 (568)
+.+.+.-+.+.|+.++|-+.|.+-+...-..-.+++.+.+.+++..
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~ 48 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKE 48 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCch
Confidence 5666777788999999999999999874433345677888877653
No 102
>PF13239 2TM: 2TM domain
Probab=23.26 E-value=4.1e+02 Score=22.07 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCceEeeehhhHHHHHHHHHHHHhHHHhhh
Q 047651 77 SLMLELIMFVSIMWLLIASLTLKRLQNHVIWDLELWKWCLLALVILSGPLLSRCF 131 (568)
Q Consensus 77 ~~~~r~~~~v~~~~~L~~~~~i~~~~~~~i~~~~lw~w~~~~~v~w~g~lva~~~ 131 (568)
.+....++|++..++|+++=.+..... + |.+|....|..-++.+.+
T Consensus 14 ~fy~Hl~~y~ivn~~l~~in~~~~~~~---~------W~~~~~~~Wgi~L~~h~~ 59 (83)
T PF13239_consen 14 GFYRHLAVYLIVNSFLIFINLFTGPGY---F------WPLWPILGWGIGLAIHAL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC---c------hHHHHHHHHHHHHHHHHH
Confidence 455566788888877776655432111 1 767778888888877755
No 103
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=22.56 E-value=93 Score=34.44 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=43.5
Q ss_pred hhccCCCCcccchhhHhcccC--ChHHHHHHHHhhCCCCCCCccHHHHHHHHHHHH
Q 047651 330 KNLETPQSKFIEKEQLKRFLN--NEQHVKKLLKLFGAVKSGKIDKADFKKWVTKVY 383 (568)
Q Consensus 330 ~~~~~~g~~~i~~eDl~~~f~--~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~iy 383 (568)
+-|-..|++.|+.|.|.+|+. .+|-.+-=|.-||+..+|.||..+|-.+++..-
T Consensus 293 yFFG~rg~~kLs~deF~~F~e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 293 YFFGKRGNGKLSIDEFLKFQENLQEEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred HhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 344568899999999999997 334355668889999999999999999988543
No 104
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.87 E-value=2.7e+02 Score=21.53 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=35.4
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHhcCCCccCCcEEEEeecCCCc
Q 047651 466 VEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWSGDHSVVVKDIEDVN 512 (568)
Q Consensus 466 i~~~V~~~T~~e~Ie~Lk~~I~~fv~~~prdf~p~~~v~v~~i~d~~ 512 (568)
+.+.+-.+.+.|+.++|-+++.+-+...-..=...+.|.+.+++..+
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~ 50 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGT 50 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhh
Confidence 45667678899999999999999988643332345688999988643
No 105
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=21.49 E-value=94 Score=31.84 Aligned_cols=48 Identities=10% Similarity=0.375 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHHHHHhHHHHHhhccchhHHHHHHH
Q 047651 355 VKKLLKLFGAVKSGKIDKADFKKWVTKVYNDRETLKRSLNDAKTAIEELN 404 (568)
Q Consensus 355 a~~af~~fD~d~nG~Is~~e~~~~vv~iy~ERk~L~~SL~D~~sav~~Ld 404 (568)
...+|+--|.+.+|.||..||.+|+.+--.| .+..++.+.++-.+.+|
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaE--HfqeameeSkthFraVD 150 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAE--HFQEAMEESKTHFRAVD 150 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHH--HHHHHHhhhhhheeeeC
Confidence 6678888899999999999999999886554 67788888776654443
No 106
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.15 E-value=1e+02 Score=23.88 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCC-CCCCccHHHHHHHHHHHHHhH
Q 047651 354 HVKKLLKLFGAV-KSGKIDKADFKKWVTKVYNDR 386 (568)
Q Consensus 354 ~a~~af~~fD~d-~nG~Is~~e~~~~vv~iy~ER 386 (568)
+-+.+...+... .+|.||.+||...+..++.-+
T Consensus 7 dR~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~ 40 (53)
T PF08044_consen 7 DRERAVDLLRAAFAEGRLSLDEFDERLDAAYAAR 40 (53)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 367777777765 899999999999999988743
No 107
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=20.14 E-value=1.1e+02 Score=34.10 Aligned_cols=59 Identities=7% Similarity=0.268 Sum_probs=43.9
Q ss_pred HHHHHHHhhhcc------CCCCcccchhhHhccc------CChHHHHHHHHhhCCCCCCCccHHHHHHHHHHH
Q 047651 322 KNLADKIIKNLE------TPQSKFIEKEQLKRFL------NNEQHVKKLLKLFGAVKSGKIDKADFKKWVTKV 382 (568)
Q Consensus 322 ~~lAr~If~~~~------~~g~~~i~~eDl~~~f------~~ee~a~~af~~fD~d~nG~Is~~e~~~~vv~i 382 (568)
...-.|||-.+. .+|+ +..+|+..|. .+++-++--|+.+|-|++|-++..||.-...++
T Consensus 310 ~~ivdRIFs~v~r~~~~~~eGr--mdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 310 ERIVDRIFSQVPRGFTVKVEGR--MDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred hHHHHHHHhhccccceeeecCc--ccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 577889998322 1344 8888888776 234447889999999999999999998655444
Done!