BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047652
         (104 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
          Protein Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 34.3 bits (77), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 19 CGGSIPQLIAQCSQFVKIEGPKVPPSPGCCTAVKGADIPCVCGLVTREVEKIISMEKVVF 78
          CG S  +L  +C   V  E P  P  P CCTA++ AD  C+CG           ++  + 
Sbjct: 5  CGMSQDEL-NECKPAVSKENPTSPSQP-CCTALQHADFACLCGYKNSPWLGSFGVDPELA 62

Query: 79 VA--RKCGLTIKP 89
           A  ++CGL   P
Sbjct: 63 SALPKQCGLANAP 75


>pdb|2DS2|B Chain B, Crystal Structure Of Mabinlin Ii
 pdb|2DS2|D Chain D, Crystal Structure Of Mabinlin Ii
          Length = 72

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 39 PKVPPSPGCCTAVKGADIPCVCGLVTREVEKIISME 74
          P+ P    CC  ++  D PCVC ++ +  ++++  +
Sbjct: 2  PRRPALRQCCNQLRQVDRPCVCPVLRQAAQQVLQRQ 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,885,501
Number of Sequences: 62578
Number of extensions: 91716
Number of successful extensions: 169
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 2
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)