BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047652
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W453|DIR1_ARATH Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana
GN=DIR1 PE=1 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 19 CGGSIPQLIAQCSQFVKIEGPKVPPSPGCCTAVKGADIPCVCGLVTREVEKIISMEKVVF 78
CG S +L +C V E P P P CCTA++ AD C+CG ++ +
Sbjct: 30 CGMSQDEL-NECKPAVSKENPTSPSQP-CCTALQHADFACLCGYKNSPWLGSFGVDPELA 87
Query: 79 VA--RKCGLTIKP 89
A ++CGL P
Sbjct: 88 SALPKQCGLANAP 100
>sp|O24493|MC1_PINRA Male-cone protein 1 OS=Pinus radiata PE=2 SV=1
Length = 92
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 16 AAQCGGSIPQLIAQCSQFVKIEGPKVPPSPGCCTAVKGADIPCVCGLVTREVEKIISMEK 75
A C ++ +L A C+ V + V PS CC A+KG CVC + V +IS+
Sbjct: 25 AEDCSNAMDKL-APCTSAVGLSSNGVKPSSECCDALKGTSTSCVC----KSVRAVISLPA 79
Query: 76 VVFVARKCGLTIKPGLKCG 94
KC L P L C
Sbjct: 80 ------KCNL---PALTCS 89
>sp|Q38737|FIL1_ANTMA Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2
SV=1
Length = 99
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 16 AAQCGGSIPQLIAQCSQFVKIEGPKVPPSPGCCTAVKGADIPCVCG 61
A C S+ L A C+ FV + G PS CCTA++ D C+C
Sbjct: 28 AQTCSASLANLNA-CAPFV-VLGAATTPSSDCCTALQSVDHECLCN 71
>sp|Q48BY8|HSLO_PSE14 33 kDa chaperonin OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=hslO PE=3 SV=1
Length = 300
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 AVIVGTLIFDNLQV-AAQCGGSIPQLIAQCSQFVKIEG 38
A++VGTL FD L + A+ G++P L+ +CS ++ G
Sbjct: 56 ALLVGTLKFDGLLILQARSSGAVPLLMVECSSERELRG 93
>sp|Q88AZ5|HSLO_PSESM 33 kDa chaperonin OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=hslO PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 AVIVGTLIFDNLQV-AAQCGGSIPQLIAQCSQFVKIEG 38
A++VGTL FD L + A+ G++P L+ +CS ++ G
Sbjct: 56 ALLVGTLKFDGLLILQARSSGAVPLLMVECSSERELRG 93
>sp|Q500D0|HSLO_PSEU2 33 kDa chaperonin OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=hslO PE=3 SV=1
Length = 300
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 2 AVIVGTLIFDNLQV-AAQCGGSIPQLIAQCSQFVKIEG 38
A++VGTL FD L + A+ G++P L+ +CS ++ G
Sbjct: 56 ALLVGTLKFDGLLILQARSSGAVPLLMVECSSERELRG 93
>sp|A1AS90|SPEA_PELPD Biosynthetic arginine decarboxylase OS=Pelobacter propionicus
(strain DSM 2379) GN=speA PE=3 SV=1
Length = 635
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 63 VTREVEKIISMEKVVFVARKCGLTIKPGLK 92
+T +EK+ +EKV+ ++RK G+T K G++
Sbjct: 168 ITIVIEKLFELEKVIELSRKTGITPKLGIR 197
>sp|C1DKD3|HSLO_AZOVD 33 kDa chaperonin OS=Azotobacter vinelandii (strain DJ / ATCC
BAA-1303) GN=hslO PE=3 SV=1
Length = 297
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 2 AVIVGTLIFDNLQV-AAQCGGSIPQLIAQCSQFVKIEG 38
A++VGTL FD L V A+ G IP L+ +CS ++ G
Sbjct: 53 ALLVGTLKFDGLLVLQARSPGPIPLLMVECSSEREVRG 90
>sp|P30233|2SS2_CAPMA Sweet protein mabinlin-2 OS=Capparis masaikai PE=1 SV=3
Length = 155
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 39 PKVPPSPGCCTAVKGADIPCVCGLVTREVEKIISME 74
P+ P CC ++ D PCVC ++ + ++++ +
Sbjct: 84 PRRPALRQCCNQLRQVDRPCVCPVLRQAAQQVLQRQ 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,355,170
Number of Sequences: 539616
Number of extensions: 1233593
Number of successful extensions: 2536
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2529
Number of HSP's gapped (non-prelim): 25
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)