Query 047655
Match_columns 370
No_of_seqs 264 out of 1213
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 13:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2832 TFIIF-interacting CTD 100.0 8.6E-63 1.9E-67 483.6 19.0 263 71-361 103-368 (393)
2 KOG1605 TFIIF-interacting CTD 100.0 2.8E-44 6E-49 344.2 10.8 164 171-337 78-259 (262)
3 TIGR02251 HIF-SF_euk Dullard-l 100.0 6.7E-40 1.5E-44 292.6 13.4 142 183-324 1-159 (162)
4 PF03031 NIF: NLI interacting 100.0 3.6E-39 7.9E-44 282.8 11.4 146 184-331 1-159 (159)
5 TIGR02245 HAD_IIID1 HAD-superf 100.0 7.4E-39 1.6E-43 295.6 13.9 156 180-338 18-192 (195)
6 COG5190 FCP1 TFIIF-interacting 100.0 1.3E-30 2.9E-35 261.2 7.2 172 166-337 195-381 (390)
7 TIGR02250 FCP1_euk FCP1-like p 100.0 7.5E-30 1.6E-34 227.6 10.5 121 181-304 4-154 (156)
8 smart00577 CPDc catalytic doma 99.9 1E-24 2.2E-29 191.3 11.7 129 182-310 1-148 (148)
9 KOG0323 TFIIF-interacting CTD 99.6 5.7E-15 1.2E-19 156.2 8.3 119 183-304 146-297 (635)
10 cd01427 HAD_like Haloacid deha 98.4 5.1E-07 1.1E-11 73.4 5.1 105 185-289 1-125 (139)
11 COG5190 FCP1 TFIIF-interacting 98.2 1.2E-06 2.6E-11 89.1 4.1 160 181-340 24-263 (390)
12 TIGR01662 HAD-SF-IIIA HAD-supe 98.2 5.4E-06 1.2E-10 70.3 7.1 100 184-286 1-112 (132)
13 TIGR01681 HAD-SF-IIIC HAD-supe 98.0 3.8E-06 8.3E-11 72.2 3.3 104 184-289 1-120 (128)
14 TIGR01684 viral_ppase viral ph 98.0 4.2E-05 9.2E-10 75.5 9.9 122 181-309 124-281 (301)
15 PHA03398 viral phosphatase sup 97.9 5E-05 1.1E-09 75.1 10.0 122 181-309 126-283 (303)
16 TIGR01685 MDP-1 magnesium-depe 97.8 5E-05 1.1E-09 69.5 6.7 115 183-299 2-152 (174)
17 PHA02530 pseT polynucleotide k 97.7 1.9E-05 4.1E-10 76.0 2.4 124 176-299 151-291 (300)
18 PRK13288 pyrophosphatase PpaX; 97.7 6.9E-05 1.5E-09 68.5 5.7 84 208-291 82-169 (214)
19 TIGR01686 FkbH FkbH-like domai 97.6 9.3E-05 2E-09 72.9 5.9 107 182-290 2-116 (320)
20 TIGR00213 GmhB_yaeD D,D-heptos 97.6 0.00022 4.8E-09 63.9 7.2 104 184-290 2-136 (176)
21 TIGR01449 PGP_bact 2-phosphogl 97.5 0.00012 2.6E-09 66.2 5.4 84 207-290 84-171 (213)
22 TIGR01656 Histidinol-ppas hist 97.5 0.00024 5.1E-09 62.1 6.6 103 184-288 1-129 (147)
23 PRK13222 phosphoglycolate phos 97.4 0.00028 6E-09 64.3 6.3 84 207-290 92-179 (226)
24 PRK13226 phosphoglycolate phos 97.4 0.00025 5.5E-09 66.1 6.1 84 207-290 94-181 (229)
25 PF05152 DUF705: Protein of un 97.4 0.00085 1.8E-08 66.0 9.7 122 181-309 120-277 (297)
26 PLN03243 haloacid dehalogenase 97.4 0.00017 3.6E-09 69.5 4.7 84 208-291 109-196 (260)
27 PRK13223 phosphoglycolate phos 97.4 0.00036 7.9E-09 67.2 7.0 84 208-291 101-188 (272)
28 PRK08942 D,D-heptose 1,7-bisph 97.4 0.00052 1.1E-08 61.6 7.1 105 183-289 3-132 (181)
29 PRK11587 putative phosphatase; 97.3 0.00056 1.2E-08 63.0 6.9 82 208-290 83-168 (218)
30 PHA02597 30.2 hypothetical pro 97.3 0.00034 7.5E-09 63.1 5.3 84 207-292 73-160 (197)
31 PRK14988 GMP/IMP nucleotidase; 97.3 0.00059 1.3E-08 63.8 6.8 83 208-290 93-179 (224)
32 TIGR00338 serB phosphoserine p 97.3 0.00015 3.3E-09 66.2 2.5 85 207-291 84-182 (219)
33 PRK13225 phosphoglycolate phos 97.3 0.00036 7.9E-09 67.7 5.1 83 208-290 142-225 (273)
34 COG0637 Predicted phosphatase/ 97.1 0.00026 5.7E-09 66.3 2.8 82 207-288 85-170 (221)
35 PLN02575 haloacid dehalogenase 97.1 0.00087 1.9E-08 68.5 6.7 83 208-290 216-302 (381)
36 TIGR01261 hisB_Nterm histidino 97.1 0.0023 5E-08 57.5 8.0 103 184-288 2-131 (161)
37 TIGR03351 PhnX-like phosphonat 97.0 0.00056 1.2E-08 62.5 3.8 82 208-289 87-175 (220)
38 TIGR01668 YqeG_hyp_ppase HAD s 97.0 0.0012 2.5E-08 59.4 5.6 95 181-288 23-119 (170)
39 TIGR01489 DKMTPPase-SF 2,3-dik 97.0 0.0025 5.4E-08 56.1 7.3 49 207-255 71-120 (188)
40 TIGR01664 DNA-3'-Pase DNA 3'-p 97.0 0.0027 5.8E-08 57.2 7.5 102 183-287 13-137 (166)
41 PRK09456 ?-D-glucose-1-phospha 96.9 0.00099 2.2E-08 60.5 4.0 83 208-290 84-171 (199)
42 TIGR01549 HAD-SF-IA-v1 haloaci 96.8 0.00092 2E-08 57.6 3.1 78 209-288 65-145 (154)
43 TIGR01533 lipo_e_P4 5'-nucleot 96.8 0.014 3E-07 57.0 11.5 100 144-258 51-173 (266)
44 PRK13582 thrH phosphoserine ph 96.8 0.0014 3.1E-08 59.1 4.4 82 208-290 68-157 (205)
45 PRK06769 hypothetical protein; 96.8 0.0023 4.9E-08 57.7 5.6 104 184-289 5-122 (173)
46 TIGR01672 AphA HAD superfamily 96.7 0.0055 1.2E-07 58.7 8.0 77 182-258 62-169 (237)
47 PLN02940 riboflavin kinase 96.7 0.0016 3.4E-08 66.2 4.4 83 208-290 93-180 (382)
48 PF12689 Acid_PPase: Acid Phos 96.6 0.0055 1.2E-07 56.1 6.9 105 182-289 2-136 (169)
49 TIGR01689 EcbF-BcbF capsule bi 96.4 0.007 1.5E-07 52.9 6.0 71 184-257 2-87 (126)
50 PRK09552 mtnX 2-hydroxy-3-keto 96.4 0.011 2.4E-07 54.6 7.2 84 207-290 73-173 (219)
51 PF13419 HAD_2: Haloacid dehal 96.3 0.0064 1.4E-07 51.8 5.2 83 206-288 75-161 (176)
52 PRK05446 imidazole glycerol-ph 96.2 0.016 3.4E-07 58.8 7.9 104 183-288 2-132 (354)
53 COG4996 Predicted phosphatase 96.2 0.019 4.1E-07 51.3 7.3 133 185-321 2-160 (164)
54 PRK11009 aphA acid phosphatase 96.2 0.014 3.1E-07 55.9 7.2 77 181-257 61-170 (237)
55 TIGR01663 PNK-3'Pase polynucle 96.1 0.011 2.4E-07 62.8 6.8 105 181-288 166-295 (526)
56 TIGR01509 HAD-SF-IA-v3 haloaci 96.0 0.011 2.3E-07 51.8 5.0 81 207-288 84-168 (183)
57 TIGR02253 CTE7 HAD superfamily 96.0 0.014 3E-07 53.2 5.7 81 207-287 93-177 (221)
58 TIGR02137 HSK-PSP phosphoserin 95.9 0.0084 1.8E-07 55.8 4.2 47 207-253 67-113 (203)
59 PRK08238 hypothetical protein; 95.9 0.021 4.6E-07 59.9 7.5 74 181-257 8-119 (479)
60 TIGR01993 Pyr-5-nucltdase pyri 95.8 0.0071 1.5E-07 53.9 3.1 80 207-288 83-169 (184)
61 TIGR02254 YjjG/YfnB HAD superf 95.7 0.025 5.3E-07 51.3 6.0 81 207-287 96-180 (224)
62 PRK11133 serB phosphoserine ph 95.6 0.017 3.8E-07 57.6 5.2 84 207-290 180-277 (322)
63 PRK09449 dUMP phosphatase; Pro 95.5 0.018 4E-07 52.7 4.7 82 207-288 94-179 (224)
64 TIGR01428 HAD_type_II 2-haloal 95.4 0.02 4.2E-07 51.6 4.3 81 208-288 92-176 (198)
65 COG0546 Gph Predicted phosphat 95.2 0.06 1.3E-06 50.0 7.0 84 208-291 89-176 (220)
66 COG0560 SerB Phosphoserine pho 95.2 0.042 9.1E-07 51.6 5.9 83 207-289 76-172 (212)
67 PLN02770 haloacid dehalogenase 95.1 0.036 7.9E-07 52.4 5.3 85 207-291 107-195 (248)
68 KOG3109 Haloacid dehalogenase- 95.0 0.032 7E-07 53.5 4.6 83 207-290 99-191 (244)
69 TIGR01454 AHBA_synth_RP 3-amin 95.0 0.039 8.3E-07 50.1 4.9 84 207-290 74-161 (205)
70 TIGR01670 YrbI-phosphatas 3-de 94.9 0.035 7.5E-07 49.1 4.4 98 184-290 2-105 (154)
71 PRK09484 3-deoxy-D-manno-octul 94.9 0.032 6.8E-07 50.7 4.3 100 182-289 20-124 (183)
72 PF08645 PNK3P: Polynucleotide 94.9 0.084 1.8E-06 47.4 6.9 105 184-289 1-130 (159)
73 PLN02954 phosphoserine phospha 94.7 0.035 7.6E-07 50.8 4.0 39 208-246 84-123 (224)
74 PRK10826 2-deoxyglucose-6-phos 94.6 0.051 1.1E-06 50.0 4.8 85 207-291 91-179 (222)
75 TIGR02009 PGMB-YQAB-SF beta-ph 94.5 0.05 1.1E-06 47.9 4.4 81 207-289 87-171 (185)
76 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.4 0.1 2.2E-06 49.1 6.4 66 183-257 8-77 (242)
77 PRK10725 fructose-1-P/6-phosph 94.4 0.055 1.2E-06 48.0 4.3 81 209-290 89-172 (188)
78 TIGR02252 DREG-2 REG-2-like, H 94.0 0.1 2.2E-06 47.1 5.4 79 208-287 105-187 (203)
79 TIGR01491 HAD-SF-IB-PSPlk HAD- 93.8 0.12 2.6E-06 46.0 5.4 82 207-288 79-174 (201)
80 PF13344 Hydrolase_6: Haloacid 93.5 0.17 3.6E-06 42.1 5.3 50 186-244 1-51 (101)
81 TIGR01422 phosphonatase phosph 93.2 0.15 3.3E-06 47.9 5.3 84 207-290 98-187 (253)
82 COG2179 Predicted hydrolase of 93.0 0.19 4.2E-06 46.3 5.4 93 181-286 26-119 (175)
83 COG1011 Predicted hydrolase (H 92.9 0.2 4.4E-06 45.5 5.5 84 207-290 98-184 (229)
84 PRK00192 mannosyl-3-phosphogly 92.9 0.2 4.4E-06 47.9 5.7 57 183-247 4-61 (273)
85 TIGR01548 HAD-SF-IA-hyp1 haloa 92.7 0.18 3.9E-06 45.6 4.9 80 209-288 107-189 (197)
86 TIGR02247 HAD-1A3-hyp Epoxide 92.6 0.086 1.9E-06 47.9 2.6 84 207-290 93-182 (211)
87 PRK10563 6-phosphogluconate ph 91.9 0.12 2.7E-06 47.2 2.8 82 207-290 87-172 (221)
88 COG0561 Cof Predicted hydrolas 91.9 0.34 7.4E-06 45.7 5.9 58 183-248 3-61 (264)
89 PF08282 Hydrolase_3: haloacid 91.7 0.26 5.7E-06 44.4 4.7 52 186-245 1-53 (254)
90 PF11019 DUF2608: Protein of u 91.2 0.44 9.5E-06 46.1 5.9 108 182-289 19-190 (252)
91 PRK13478 phosphonoacetaldehyde 91.1 0.48 1E-05 45.1 6.0 84 207-290 100-189 (267)
92 PRK03669 mannosyl-3-phosphogly 90.8 0.46 9.9E-06 45.4 5.5 59 181-247 5-64 (271)
93 TIGR01487 SPP-like sucrose-pho 90.6 0.53 1.2E-05 43.1 5.7 57 184-248 2-59 (215)
94 TIGR01484 HAD-SF-IIB HAD-super 90.6 0.41 8.9E-06 43.2 4.8 54 185-245 1-55 (204)
95 PLN02779 haloacid dehalogenase 90.5 0.29 6.2E-06 47.7 3.9 84 207-291 143-233 (286)
96 PRK10187 trehalose-6-phosphate 90.3 0.66 1.4E-05 44.7 6.2 62 181-245 12-75 (266)
97 TIGR02463 MPGP_rel mannosyl-3- 90.3 0.47 1E-05 43.5 4.9 53 186-246 2-55 (221)
98 TIGR01990 bPGM beta-phosphoglu 90.1 0.46 1E-05 41.7 4.6 80 208-289 87-170 (185)
99 TIGR01544 HAD-SF-IE haloacid d 89.9 0.84 1.8E-05 45.0 6.7 84 206-289 119-223 (277)
100 TIGR02461 osmo_MPG_phos mannos 89.9 0.52 1.1E-05 44.3 5.0 52 186-246 2-54 (225)
101 PTZ00445 p36-lilke protein; Pr 89.9 0.51 1.1E-05 45.1 4.9 108 181-291 41-192 (219)
102 PF09419 PGP_phosphatase: Mito 89.5 0.85 1.8E-05 41.9 5.9 59 180-245 38-106 (168)
103 TIGR01493 HAD-SF-IA-v2 Haloaci 89.2 0.15 3.3E-06 44.7 0.9 76 207-288 89-167 (175)
104 PRK06698 bifunctional 5'-methy 89.2 0.59 1.3E-05 48.4 5.2 81 208-290 330-413 (459)
105 PLN02645 phosphoglycolate phos 89.2 0.57 1.2E-05 46.1 4.9 54 183-245 28-82 (311)
106 PRK10513 sugar phosphate phosp 89.0 1.1 2.4E-05 42.3 6.5 57 183-247 3-60 (270)
107 PF06888 Put_Phosphatase: Puta 88.9 1.3 2.7E-05 42.7 6.9 49 207-255 70-121 (234)
108 TIGR01456 CECR5 HAD-superfamil 88.6 0.66 1.4E-05 45.9 4.9 52 184-244 1-61 (321)
109 COG0241 HisB Histidinol phosph 88.4 1.2 2.7E-05 41.3 6.2 106 182-287 4-132 (181)
110 TIGR00099 Cof-subfamily Cof su 88.4 0.88 1.9E-05 42.7 5.4 55 185-247 1-56 (256)
111 smart00775 LNS2 LNS2 domain. T 88.3 0.78 1.7E-05 41.0 4.7 58 186-244 2-67 (157)
112 TIGR01486 HAD-SF-IIB-MPGP mann 88.2 0.82 1.8E-05 43.2 5.1 54 185-246 1-55 (256)
113 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.1 0.86 1.9E-05 43.6 5.2 56 184-244 2-58 (257)
114 PRK10444 UMP phosphatase; Prov 87.9 0.98 2.1E-05 43.3 5.4 53 184-245 2-55 (248)
115 TIGR01691 enolase-ppase 2,3-di 87.5 0.85 1.8E-05 43.2 4.7 83 207-289 94-181 (220)
116 TIGR02726 phenyl_P_delta pheny 87.3 1.2 2.7E-05 40.5 5.5 101 182-289 6-110 (169)
117 TIGR03333 salvage_mtnX 2-hydro 87.1 1.5 3.3E-05 40.3 6.1 41 207-247 69-110 (214)
118 PRK01158 phosphoglycolate phos 86.6 1.6 3.4E-05 40.0 5.9 57 184-248 4-61 (230)
119 PLN02811 hydrolase 86.3 1 2.2E-05 41.5 4.5 84 207-290 77-170 (220)
120 PRK10530 pyridoxal phosphate ( 86.0 1.9 4.1E-05 40.5 6.2 57 183-247 3-60 (272)
121 TIGR01488 HAD-SF-IB Haloacid D 86.0 2.2 4.7E-05 37.2 6.2 47 207-253 72-119 (177)
122 KOG3120 Predicted haloacid deh 85.9 1.1 2.4E-05 43.4 4.5 85 180-264 10-142 (256)
123 PLN02919 haloacid dehalogenase 85.5 1.5 3.2E-05 50.6 6.1 81 209-289 162-247 (1057)
124 TIGR01452 PGP_euk phosphoglyco 85.4 1.7 3.7E-05 41.9 5.7 52 184-244 3-55 (279)
125 TIGR01482 SPP-subfamily Sucros 85.2 1.7 3.7E-05 39.5 5.3 52 186-245 1-53 (225)
126 PRK15126 thiamin pyrimidine py 84.4 2.1 4.5E-05 40.6 5.7 57 184-248 3-60 (272)
127 COG3882 FkbH Predicted enzyme 82.5 1.6 3.5E-05 46.4 4.4 123 181-308 220-359 (574)
128 PRK10976 putative hydrolase; P 82.1 3.1 6.7E-05 39.2 5.8 56 184-247 3-59 (266)
129 PLN02423 phosphomannomutase 81.9 3.6 7.9E-05 39.1 6.3 53 183-246 7-59 (245)
130 TIGR01485 SPP_plant-cyano sucr 81.6 1.9 4.1E-05 40.6 4.2 58 183-245 1-59 (249)
131 COG2503 Predicted secreted aci 81.0 4.4 9.6E-05 39.8 6.5 52 181-232 77-146 (274)
132 TIGR01490 HAD-SF-IB-hyp1 HAD-s 80.4 3.6 7.7E-05 36.9 5.4 48 207-254 86-134 (202)
133 PRK12702 mannosyl-3-phosphogly 80.2 3.7 8.1E-05 41.1 5.8 56 184-247 2-58 (302)
134 COG1877 OtsB Trehalose-6-phosp 80.1 4.2 9E-05 40.0 6.1 59 181-242 16-76 (266)
135 PRK10748 flavin mononucleotide 79.8 1.8 3.9E-05 40.6 3.4 76 207-287 112-190 (238)
136 PRK14502 bifunctional mannosyl 79.3 7 0.00015 43.3 8.0 59 181-247 414-473 (694)
137 TIGR01457 HAD-SF-IIA-hyp2 HAD- 79.3 3.9 8.4E-05 38.9 5.5 50 185-243 3-53 (249)
138 TIGR01460 HAD-SF-IIA Haloacid 78.8 3.1 6.7E-05 39.2 4.6 48 186-242 1-53 (236)
139 TIGR00685 T6PP trehalose-phosp 76.6 3 6.5E-05 39.4 3.9 49 182-233 2-51 (244)
140 TIGR01675 plant-AP plant acid 75.9 5.1 0.00011 38.6 5.2 77 181-257 75-172 (229)
141 COG0647 NagD Predicted sugar p 75.7 5.2 0.00011 39.4 5.3 54 183-245 8-62 (269)
142 PLN03017 trehalose-phosphatase 75.4 4.6 0.0001 41.5 5.0 58 182-242 110-167 (366)
143 PTZ00174 phosphomannomutase; P 75.1 5.5 0.00012 37.7 5.2 44 182-233 4-48 (247)
144 PF03767 Acid_phosphat_B: HAD 74.6 2.8 6.1E-05 39.8 3.1 67 181-248 70-156 (229)
145 PLN02151 trehalose-phosphatase 73.8 5.6 0.00012 40.7 5.2 58 182-242 97-154 (354)
146 TIGR01511 ATPase-IB1_Cu copper 73.4 6.7 0.00014 42.0 5.9 104 183-301 385-492 (562)
147 PLN02887 hydrolase family prot 73.3 8.9 0.00019 41.6 6.9 57 182-246 307-364 (580)
148 PLN02580 trehalose-phosphatase 70.4 7.9 0.00017 40.0 5.4 59 181-242 117-175 (384)
149 PRK11590 hypothetical protein; 68.9 2.8 6.2E-05 38.6 1.7 38 208-245 95-134 (211)
150 TIGR01548 HAD-SF-IA-hyp1 haloa 68.0 2.8 6E-05 37.8 1.4 14 185-198 2-15 (197)
151 PRK10725 fructose-1-P/6-phosph 68.0 3.1 6.7E-05 36.7 1.7 16 183-198 5-20 (188)
152 TIGR01993 Pyr-5-nucltdase pyri 67.3 3 6.6E-05 37.0 1.5 14 185-198 2-15 (184)
153 TIGR02253 CTE7 HAD superfamily 66.4 3.4 7.4E-05 37.4 1.7 16 184-199 3-18 (221)
154 PF05116 S6PP: Sucrose-6F-phos 65.1 10 0.00023 36.1 4.8 54 182-244 1-56 (247)
155 PF06941 NT5C: 5' nucleotidase 63.3 8.1 0.00018 35.0 3.5 28 208-235 73-101 (191)
156 TIGR02009 PGMB-YQAB-SF beta-ph 63.0 3.8 8.2E-05 35.9 1.2 15 184-198 2-16 (185)
157 PRK14501 putative bifunctional 62.6 12 0.00027 41.2 5.4 61 181-244 490-552 (726)
158 PF08235 LNS2: LNS2 (Lipin/Ned 62.5 14 0.0003 33.7 4.8 57 186-243 2-63 (157)
159 TIGR02252 DREG-2 REG-2-like, H 62.3 4.5 9.7E-05 36.3 1.6 15 185-199 2-16 (203)
160 COG4359 Uncharacterized conser 62.2 22 0.00047 33.9 6.1 41 207-247 72-113 (220)
161 PF13419 HAD_2: Haloacid dehal 59.2 4.1 8.8E-05 34.4 0.7 14 186-199 1-14 (176)
162 PRK13478 phosphonoacetaldehyde 58.7 5.6 0.00012 37.8 1.7 16 183-198 4-19 (267)
163 PRK09449 dUMP phosphatase; Pro 58.7 4.8 0.0001 36.7 1.2 15 184-198 4-18 (224)
164 TIGR01990 bPGM beta-phosphoglu 58.6 4.3 9.4E-05 35.5 0.8 14 185-198 1-14 (185)
165 PLN02770 haloacid dehalogenase 58.4 4.8 0.0001 38.0 1.2 16 183-198 22-37 (248)
166 TIGR01422 phosphonatase phosph 57.1 6.7 0.00015 36.7 1.9 15 184-198 3-17 (253)
167 COG3700 AphA Acid phosphatase 56.7 10 0.00022 35.9 2.9 101 181-287 61-170 (237)
168 TIGR02247 HAD-1A3-hyp Epoxide 56.2 7 0.00015 35.4 1.8 15 184-198 3-17 (211)
169 TIGR01509 HAD-SF-IA-v3 haloaci 56.1 5.3 0.00011 34.7 0.9 15 185-199 1-15 (183)
170 TIGR01428 HAD_type_II 2-haloal 55.9 5.7 0.00012 35.6 1.2 15 184-198 2-16 (198)
171 PRK10748 flavin mononucleotide 55.9 5.9 0.00013 37.1 1.3 16 183-198 10-25 (238)
172 TIGR01491 HAD-SF-IB-PSPlk HAD- 55.6 7 0.00015 34.6 1.7 16 183-198 4-19 (201)
173 TIGR01680 Veg_Stor_Prot vegeta 55.6 26 0.00057 34.8 5.7 76 182-257 100-197 (275)
174 TIGR02254 YjjG/YfnB HAD superf 55.1 6.3 0.00014 35.5 1.3 16 184-199 2-17 (224)
175 TIGR01454 AHBA_synth_RP 3-amin 54.1 5.1 0.00011 36.2 0.5 13 186-198 1-13 (205)
176 TIGR01493 HAD-SF-IA-v2 Haloaci 53.9 6.1 0.00013 34.5 1.0 13 186-198 2-14 (175)
177 PRK10826 2-deoxyglucose-6-phos 53.5 7 0.00015 35.8 1.3 17 182-198 6-22 (222)
178 PLN02779 haloacid dehalogenase 52.6 7.7 0.00017 37.8 1.5 16 183-198 40-55 (286)
179 PLN03063 alpha,alpha-trehalose 51.0 25 0.00053 39.6 5.3 64 181-244 505-570 (797)
180 TIGR01525 ATPase-IB_hvy heavy 49.9 23 0.0005 37.8 4.7 76 206-289 382-459 (556)
181 PRK06975 bifunctional uroporph 49.0 17 0.00036 40.0 3.5 19 78-96 324-342 (656)
182 PRK11590 hypothetical protein; 48.5 36 0.00077 31.3 5.2 17 182-198 5-21 (211)
183 PF00702 Hydrolase: haloacid d 48.5 13 0.00027 33.0 2.1 79 206-287 125-205 (215)
184 PRK10563 6-phosphogluconate ph 47.6 10 0.00022 34.5 1.4 16 183-198 4-19 (221)
185 TIGR01545 YfhB_g-proteo haloac 47.5 37 0.00079 31.6 5.1 36 208-243 94-131 (210)
186 KOG2832 TFIIF-interacting CTD 43.6 0.54 1.2E-05 48.1 -8.2 87 253-339 129-224 (393)
187 PRK06698 bifunctional 5'-methy 42.8 11 0.00024 39.0 1.0 17 183-199 241-257 (459)
188 COG3769 Predicted hydrolase (H 42.4 65 0.0014 31.6 6.0 58 182-248 6-64 (274)
189 PF09440 eIF3_N: eIF3 subunit 42.3 71 0.0015 28.3 5.9 25 337-361 58-82 (133)
190 PF12710 HAD: haloacid dehalog 41.8 48 0.001 28.9 4.8 44 211-254 92-138 (192)
191 TIGR02471 sucr_syn_bact_C sucr 40.5 12 0.00026 34.7 0.7 52 185-245 1-52 (236)
192 TIGR01512 ATPase-IB2_Cd heavy 40.5 42 0.00091 35.7 4.9 76 206-289 360-437 (536)
193 COG1011 Predicted hydrolase (H 40.3 17 0.00037 32.8 1.7 18 182-199 3-20 (229)
194 PRK10920 putative uroporphyrin 39.4 21 0.00046 37.0 2.4 28 326-353 305-334 (390)
195 KOG2914 Predicted haloacid-hal 38.9 39 0.00085 32.4 4.0 84 207-290 91-182 (222)
196 PF07960 CBP4: CBP4; InterPro 38.8 16 0.00034 32.5 1.1 26 85-110 12-37 (128)
197 PF02358 Trehalose_PPase: Treh 38.6 36 0.00078 31.7 3.7 51 187-240 1-53 (235)
198 PLN02205 alpha,alpha-trehalose 37.2 57 0.0012 37.2 5.5 60 181-245 594-655 (854)
199 PLN02382 probable sucrose-phos 36.4 20 0.00043 37.1 1.7 16 182-197 8-23 (413)
200 PLN03064 alpha,alpha-trehalose 36.1 63 0.0014 37.3 5.6 64 181-244 589-660 (934)
201 TIGR01545 YfhB_g-proteo haloac 35.5 21 0.00045 33.2 1.5 17 183-199 5-21 (210)
202 KOG1615 Phosphoserine phosphat 29.2 1.5E+02 0.0034 28.5 6.1 98 207-306 87-201 (227)
203 KOG2675 Adenylate cyclase-asso 28.4 40 0.00086 35.7 2.2 7 187-193 326-332 (480)
204 cd06537 CIDE_N_B CIDE_N domain 28.0 82 0.0018 25.9 3.6 34 183-232 39-72 (81)
205 cd06539 CIDE_N_A CIDE_N domain 26.2 89 0.0019 25.5 3.5 34 183-232 40-73 (78)
206 KOG2134 Polynucleotide kinase 26.2 81 0.0017 33.1 4.0 53 181-233 73-130 (422)
207 PF04695 Pex14_N: Peroxisomal 26.0 22 0.00049 31.2 0.0 24 72-100 103-126 (136)
208 cd02037 MRP-like MRP (Multiple 25.2 74 0.0016 27.9 3.2 49 182-235 28-79 (169)
209 PF04375 HemX: HemX; InterPro 24.9 62 0.0013 33.1 2.9 25 327-351 300-326 (372)
210 TIGR02244 HAD-IG-Ncltidse HAD 23.8 1.1E+02 0.0024 31.2 4.5 41 205-245 181-223 (343)
211 cd06536 CIDE_N_ICAD CIDE_N dom 23.7 1.1E+02 0.0023 25.1 3.5 16 182-197 41-56 (80)
212 PF06941 NT5C: 5' nucleotidase 23.6 44 0.00094 30.2 1.4 16 183-198 2-17 (191)
213 PF15061 DUF4538: Domain of un 23.0 23 0.00051 27.3 -0.4 25 74-100 3-27 (58)
214 PF00702 Hydrolase: haloacid d 22.7 49 0.0011 29.2 1.5 15 184-198 2-16 (215)
215 PF05822 UMPH-1: Pyrimidine 5' 22.7 89 0.0019 30.6 3.4 40 206-245 88-128 (246)
216 cd01615 CIDE_N CIDE_N domain, 22.1 1.2E+02 0.0025 24.8 3.4 16 182-197 39-54 (78)
217 cd06538 CIDE_N_FSP27 CIDE_N do 22.0 1.1E+02 0.0024 25.0 3.3 15 183-197 39-53 (79)
218 TIGR03781 Bac_Flav_CT_K Bacter 21.2 1E+02 0.0022 29.3 3.4 29 73-101 8-36 (202)
219 PF10660 MitoNEET_N: Iron-cont 21.1 32 0.00069 27.0 0.0 20 81-100 36-55 (64)
220 PF04375 HemX: HemX; InterPro 20.7 58 0.0012 33.3 1.7 10 352-361 346-355 (372)
221 COG4502 5'(3')-deoxyribonucleo 20.5 1.1E+02 0.0025 28.1 3.3 29 207-235 67-95 (180)
222 PLN02177 glycerol-3-phosphate 20.4 54 0.0012 35.0 1.5 21 225-245 124-145 (497)
223 smart00266 CAD Domains present 20.1 1.3E+02 0.0028 24.3 3.3 15 183-197 38-52 (74)
224 TIGR01478 STEVOR variant surfa 20.1 78 0.0017 31.8 2.4 38 307-354 55-93 (295)
No 1
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=8.6e-63 Score=483.59 Aligned_cols=263 Identities=41% Similarity=0.636 Sum_probs=232.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhhcceeeEEEecCCchHHHHhhhhhhccCCCCCCCCchhHHHHHHHHhhhccchhHHHHHH
Q 047655 71 VRKSSWRFLTYGIVATLTGVTAGAGYLTYAYSTDEIEEKTRSLRESVNYTAGDDTSASEKYQGLLYSAAMTVPAKAVEIY 150 (370)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~e~d~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~~y 150 (370)
..+++|+.++..+..++++++++. ++|-++.++.||.+ +|.|++|. .++ +.|
T Consensus 103 e~~~~~rr~~~~f~~~~~s~~s~~--a~y~~g~~~~de~G---------~i~ddfs~--~l~---------------~~~ 154 (393)
T KOG2832|consen 103 ELRRAFRRMKLKFPVFGGSAVSIS--AIYLTGEPSRDEKG---------KIIDDFSN--YLV---------------QYL 154 (393)
T ss_pred hhhHHHHhhhcceeeecccceeEE--EEEEecCCccccCC---------CcchhHHH--HHH---------------HHH
Confidence 346677777755554433333333 66777777777654 36677774 232 345
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCC--CCCCCCCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEE
Q 047655 151 LDLRRLIEEQVRGFTEPTSDKLLPD--LHPAEQHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVV 228 (370)
Q Consensus 151 ~~~r~~~~~~~~~f~eP~~~~LLP~--~~P~~~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVI 228 (370)
.|+++.++++.++|+||.+.+|||| ++|+.|+++||||||+++|||.+|+..+||+++||||+|+||.+|+++|||||
T Consensus 155 ~R~~~~~~~~~~~~~EP~~~~LLPdpl~pPy~Qp~yTLVleledvLVhpdws~~tGwRf~kRPgvD~FL~~~a~~yEIVi 234 (393)
T KOG2832|consen 155 RRVWKIFNSYERMFKEPDRAKLLPDPLPPPYEQPPYTLVLELEDVLVHPDWSYKTGWRFKKRPGVDYFLGHLAKYYEIVV 234 (393)
T ss_pred HHHHHHHHhHHHHhcCCchhhhCCCCCCCcccCCCceEEEEeeeeEeccchhhhcCceeccCchHHHHHHhhcccceEEE
Confidence 5788899999999999999999999 56677999999999999999999999999999999999999999999999999
Q ss_pred eccCchhcHHHHHhhcCCCcceeEEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCC
Q 047655 229 YSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPD 308 (370)
Q Consensus 229 fTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~ 308 (370)
||+++.+|+.+|++.|||+|||+|+|||++|.+.+|+|+|||++||||+++||+||.++.++.+||+|.|++++|.|+++
T Consensus 235 ~sse~gmt~~pl~d~lDP~g~IsYkLfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~d 314 (393)
T KOG2832|consen 235 YSSEQGMTVFPLLDALDPKGYISYKLFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDD 314 (393)
T ss_pred EecCCccchhhhHhhcCCcceEEEEEecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhHHHHHHHHhCCCCcHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHH
Q 047655 309 DTALLDLIPFLEYVARNSPADIRAVLASYEK-KDIAKEFLERSKDYQRRMQEQR 361 (370)
Q Consensus 309 D~eLl~LipfLe~La~~~v~DVR~vL~sy~~-~di~~ef~~r~~~~~~~~~~~~ 361 (370)
|+.|++|++||+.||+++++|||++|.+|.+ +|..++|.+|++.+++++.++.
T Consensus 315 Dt~L~dL~~FL~~ia~~~~eDvR~vL~~y~~~~D~~~~F~~rqk~l~eq~~~~~ 368 (393)
T KOG2832|consen 315 DTSLFDLLAFLEYIAQQQVEDVRPVLQSYSQEKDPAKEFRDRQKKLQEQQYESE 368 (393)
T ss_pred cchhhhHHHHHHHHHHccHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 6788999999988887666554
No 2
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.8e-44 Score=344.16 Aligned_cols=164 Identities=41% Similarity=0.596 Sum_probs=150.1
Q ss_pred CCCCCCCCCCCCceEEEEeCCCceeccc--cCCC---------------CceeeeeCccHHHHHHHHHhcccEEEeccCc
Q 047655 171 KLLPDLHPAEQHVFTLVLDLNETLLYSD--WKRD---------------RGWRTFKRPGVDAFLEHMAKFYEIVVYSDQL 233 (370)
Q Consensus 171 ~LLP~~~P~~~~k~TLVLDLDeTLVhs~--~~~~---------------~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~ 233 (370)
+++|.-.+ ..+|+||||||||||||+. ..+. +-++|.+|||+|+||+.++++||+||||++.
T Consensus 78 ~~~~~~~~-~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~ 156 (262)
T KOG1605|consen 78 PVLPLRLA-TVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASL 156 (262)
T ss_pred ccCCcccc-cCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhh
Confidence 34444443 5789999999999999998 4331 2267999999999999999999999999999
Q ss_pred hhcHHHHHhhcCC-CcceeEEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCChHH
Q 047655 234 NMYVDPVCERLDT-NHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTAL 312 (370)
Q Consensus 234 ~~YA~~Il~~LDP-~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~eL 312 (370)
..||++|++.||| .+.|.+|+||++|...+|.|+|||+.+|+|+++||||||+|.+|.+||+|||||++|..++.|+||
T Consensus 157 ~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~~d~~D~eL 236 (262)
T KOG1605|consen 157 EVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWFDDPTDTEL 236 (262)
T ss_pred HHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccccCCChHHH
Confidence 9999999999999 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhCCCCcHHHHHHhh
Q 047655 313 LDLIPFLEYVARNSPADIRAVLASY 337 (370)
Q Consensus 313 l~LipfLe~La~~~v~DVR~vL~sy 337 (370)
++|+|||+.|+. ++|||++|+..
T Consensus 237 L~LlpfLe~L~~--~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 237 LKLLPFLEALAF--VDDVRPILARR 259 (262)
T ss_pred HHHHHHHHHhcc--cccHHHHHHHh
Confidence 999999999997 59999999754
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=6.7e-40 Score=292.60 Aligned_cols=142 Identities=43% Similarity=0.705 Sum_probs=136.1
Q ss_pred ceEEEEeCCCceeccccCCCC----------------ceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCC
Q 047655 183 VFTLVLDLNETLLYSDWKRDR----------------GWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~----------------G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
++||||||||||||+.+.+.. +|++++|||+++||++|+++|||+|||++.+.||++|++.|||
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 589999999999999987743 5889999999999999999999999999999999999999999
Q ss_pred Cc-ceeEEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCChHHhhhHHHHHHHHh
Q 047655 247 NH-CIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVAR 324 (370)
Q Consensus 247 ~~-~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~eLl~LipfLe~La~ 324 (370)
.+ +|.++++|++|....|.++|||+.+|+++++||||||++..+..||+|+|+|.+|.|+.+|++|.+|++||+.|+.
T Consensus 81 ~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 81 GGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred CCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 87 8999999999999889999999999999999999999999999999999999999999999999999999999987
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=3.6e-39 Score=282.85 Aligned_cols=146 Identities=40% Similarity=0.675 Sum_probs=123.3
Q ss_pred eEEEEeCCCceeccccCCC-----------CceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCC-ccee
Q 047655 184 FTLVLDLNETLLYSDWKRD-----------RGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTN-HCIR 251 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~-----------~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~-~~i~ 251 (370)
+||||||||||||+..... .++.+++|||+++||++|+++|||+|||++.+.||++|++.|||+ .+|.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~ 80 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS 80 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhccccc
Confidence 6999999999999998752 368899999999999999999999999999999999999999996 5799
Q ss_pred EEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCC-CCChHHhhhHHHHHHHHhCCCCcH
Q 047655 252 YRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLE-PDDTALLDLIPFLEYVARNSPADI 330 (370)
Q Consensus 252 ~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd-~~D~eLl~LipfLe~La~~~v~DV 330 (370)
++++|++|....|.++|||+++|+++++||||||++.+|..||+|+|+|++|.++ ++|++|.+|++||+.|+. .+||
T Consensus 81 ~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~~l~~~L~~l~~--~~Dv 158 (159)
T PF03031_consen 81 RRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELLRLLPFLEELAK--EDDV 158 (159)
T ss_dssp EEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHHHHHHHHHHHHT--HS-C
T ss_pred cccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHHHHHHHHHHhCc--ccCC
Confidence 9999999998888889999999999999999999999999999999999999999 899999999999999996 5999
Q ss_pred H
Q 047655 331 R 331 (370)
Q Consensus 331 R 331 (370)
|
T Consensus 159 r 159 (159)
T PF03031_consen 159 R 159 (159)
T ss_dssp H
T ss_pred C
Confidence 8
No 5
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=7.4e-39 Score=295.59 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=134.2
Q ss_pred CCCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCc--ceeEEEecC
Q 047655 180 EQHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNH--CIRYRLSRG 257 (370)
Q Consensus 180 ~~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~--~i~~rL~Re 257 (370)
..+++||||||||||||+.+....+ ++.+||||++||++|+++|||+||||+++.||+++++.|++.. .+..+++++
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~~~-~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld 96 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAETG-EELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLD 96 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCCCc-eEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEec
Confidence 4688999999999999987666666 5799999999999999999999999999999999999997642 234445557
Q ss_pred ccc------ccCCc-cccccccCCC------CCCcEEEEeCCCccccCCCCccccCCCCCC----CCCChHHhhhHHHHH
Q 047655 258 ATK------YQDGK-HYRDLSKLNR------DPAKILYVSGHAFESSLQPENCVPIKPYKL----EPDDTALLDLIPFLE 320 (370)
Q Consensus 258 ~c~------~~~G~-~iKDLs~LgR------Dls~VIiIDd~~~~~~~qpeN~I~I~~w~g----d~~D~eLl~LipfLe 320 (370)
+|. +..|. ++|||+.+++ |++|||||||+|.++.+||+|||+|++|.+ +.+|++|.+|+|||+
T Consensus 97 ~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~ 176 (195)
T TIGR02245 97 STAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHANRGTDQELLKLTQYLK 176 (195)
T ss_pred cccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCCCcccHHHHHHHHHHH
Confidence 772 33555 4999998843 789999999999999999999999999996 468999999999999
Q ss_pred HHHhCCCCcHHHHHHhhc
Q 047655 321 YVARNSPADIRAVLASYE 338 (370)
Q Consensus 321 ~La~~~v~DVR~vL~sy~ 338 (370)
.|+. ++|||++++.+.
T Consensus 177 ~la~--~~Dvr~~~~~~w 192 (195)
T TIGR02245 177 TIAE--LEDFSSLDHKEW 192 (195)
T ss_pred HHhc--Ccccchhhhccc
Confidence 9997 899999998654
No 6
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.96 E-value=1.3e-30 Score=261.20 Aligned_cols=172 Identities=31% Similarity=0.493 Sum_probs=159.5
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeCCCceeccccCC---------------CCceeeeeCccHHHHHHHHHhcccEEEec
Q 047655 166 EPTSDKLLPDLHPAEQHVFTLVLDLNETLLYSDWKR---------------DRGWRTFKRPGVDAFLEHMAKFYEIVVYS 230 (370)
Q Consensus 166 eP~~~~LLP~~~P~~~~k~TLVLDLDeTLVhs~~~~---------------~~G~~v~kRPgld~FL~~Ls~~YEIVIfT 230 (370)
++..++|.|......+++.||++|||+||+|+.... .++|++.+||+|++||..++++|++++||
T Consensus 195 ~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft 274 (390)
T COG5190 195 EAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFT 274 (390)
T ss_pred hcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEe
Confidence 333456777777777899999999999999997543 25689999999999999999999999999
Q ss_pred cCchhcHHHHHhhcCCCcceeEEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCCh
Q 047655 231 DQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDT 310 (370)
Q Consensus 231 s~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~ 310 (370)
++.+.|+++|++.||+.+.|.+++||++|...+|.|+|||+.++|++.+|||||++|.+|.+||+|+|+|++|.+++.|+
T Consensus 275 ~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d~ 354 (390)
T COG5190 275 ASVKRYADPVLDILDSDKVFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHDD 354 (390)
T ss_pred cchhhhcchHHHhccccceeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHhCCCCcHHHHHHhh
Q 047655 311 ALLDLIPFLEYVARNSPADIRAVLASY 337 (370)
Q Consensus 311 eLl~LipfLe~La~~~v~DVR~vL~sy 337 (370)
+|+.|++||+.|..+++.||+.+|.+-
T Consensus 355 el~~ll~~le~L~~~~~~d~~~~l~~~ 381 (390)
T COG5190 355 ELLNLLPFLEDLPDRDLKDVSSILQSR 381 (390)
T ss_pred hhhhhcccccccccccchhhhhhhhhh
Confidence 999999999999999999999999643
No 7
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=7.5e-30 Score=227.60 Aligned_cols=121 Identities=24% Similarity=0.386 Sum_probs=108.7
Q ss_pred CCceEEEEeCCCceeccccCCC---------------------------CceeeeeCccHHHHHHHHHhcccEEEeccCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRD---------------------------RGWRTFKRPGVDAFLEHMAKFYEIVVYSDQL 233 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~---------------------------~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~ 233 (370)
++|+|||||||||||||...+. ...++++|||+++||+.|++.||++|||++.
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~~ 83 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMGT 83 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCCc
Confidence 5899999999999999987642 0145789999999999999999999999999
Q ss_pred hhcHHHHHhhcCCCc-ceeEE-EecCcccccCCccccccc-cCCCCCCcEEEEeCCCccccCCCCccccCCCCC
Q 047655 234 NMYVDPVCERLDTNH-CIRYR-LSRGATKYQDGKHYRDLS-KLNRDPAKILYVSGHAFESSLQPENCVPIKPYK 304 (370)
Q Consensus 234 ~~YA~~Il~~LDP~~-~i~~r-L~Re~c~~~~G~~iKDLs-~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~ 304 (370)
+.||++|++.|||.+ +|.++ ++|++|. |.++|||+ .+|+|+++||||||++..|..||+|+|+|++|.
T Consensus 84 ~~yA~~vl~~ldp~~~~F~~ri~~rd~~~---~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~ 154 (156)
T TIGR02250 84 RAYAQAIAKLIDPDGKYFGDRIISRDESG---SPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYN 154 (156)
T ss_pred HHHHHHHHHHhCcCCCeeccEEEEeccCC---CCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcc
Confidence 999999999999996 68555 6799995 78999995 468999999999999999999999999999996
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.92 E-value=1e-24 Score=191.29 Aligned_cols=129 Identities=40% Similarity=0.616 Sum_probs=116.5
Q ss_pred CceEEEEeCCCceeccccCCC------------------CceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhh
Q 047655 182 HVFTLVLDLNETLLYSDWKRD------------------RGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCER 243 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~------------------~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~ 243 (370)
++++|||||||||||+..... ..+.+..|||+++||++|.+.|+|+|||++...|++.+++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 589999999999999863221 13567899999999999999999999999999999999999
Q ss_pred cCCCc-ceeEEEecCcccccCCccccccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCCh
Q 047655 244 LDTNH-CIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDT 310 (370)
Q Consensus 244 LDP~~-~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~ 310 (370)
+++.+ +|...+++++|....+.+.|+|+.+|++++++|+|||++..+..+++|+|.|++|.|+.+|+
T Consensus 81 l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~~d~ 148 (148)
T smart00577 81 LDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDPDDT 148 (148)
T ss_pred hCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCCCCC
Confidence 99975 56889999999877667999999999999999999999999999999999999999999884
No 9
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.56 E-value=5.7e-15 Score=156.17 Aligned_cols=119 Identities=26% Similarity=0.306 Sum_probs=99.1
Q ss_pred ceEEEEeCCCceeccccCCC------------------------------CceeeeeCccHHHHHHHHHhcccEEEeccC
Q 047655 183 VFTLVLDLNETLLYSDWKRD------------------------------RGWRTFKRPGVDAFLEHMAKFYEIVVYSDQ 232 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~------------------------------~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~ 232 (370)
+++||+|||.||+|+..... .-++++.|||+.+||+++++.||+.|||.+
T Consensus 146 ~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg 225 (635)
T KOG0323|consen 146 KLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMG 225 (635)
T ss_pred cceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEecc
Confidence 37999999999999874321 126789999999999999999999999999
Q ss_pred chhcHHHHHhhcCCCc-ceeEE-EecCcccccCCccccccccCC-CCCCcEEEEeCCCccccCCCCccccCCCCC
Q 047655 233 LNMYVDPVCERLDTNH-CIRYR-LSRGATKYQDGKHYRDLSKLN-RDPAKILYVSGHAFESSLQPENCVPIKPYK 304 (370)
Q Consensus 233 ~~~YA~~Il~~LDP~~-~i~~r-L~Re~c~~~~G~~iKDLs~Lg-RDls~VIiIDd~~~~~~~qpeN~I~I~~w~ 304 (370)
.+.||..|+..|||.+ +|..| ++|+. ..+.-.+||..+. ++.+.||||||+...|..++.|.|.|.+|.
T Consensus 226 ~R~YA~~i~~liDP~~~lF~dRIisrde---~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~ 297 (635)
T KOG0323|consen 226 TRDYALEIAKLIDPEGKYFGDRIISRDE---SPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP 297 (635)
T ss_pred chHHHHHHHHHhCCCCccccceEEEecC---CCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence 9999999999999997 57765 66765 1122356777764 567779999999999999999999999984
No 10
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.37 E-value=5.1e-07 Score=73.44 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=72.4
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc-
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ- 262 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~- 262 (370)
++|+|+||||+..............+|++.+||++|.+. +.|+|.|++...++..+++.+.-...+...+..+.....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYY 80 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhc
Confidence 489999999998754333333467899999999999986 999999999999999999987654334434333322110
Q ss_pred ---------------CC---ccccccccCCCCCCcEEEEeCCCcc
Q 047655 263 ---------------DG---KHYRDLSKLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 263 ---------------~G---~~iKDLs~LgRDls~VIiIDd~~~~ 289 (370)
.+ .+..-++.++.+.+.+++|+|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d 125 (139)
T cd01427 81 PKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLND 125 (139)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHH
Confidence 11 1112233445568889999998743
No 11
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=98.18 E-value=1.2e-06 Score=89.11 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=122.2
Q ss_pred CCceEEEEeCCCceeccccCC-------------------------CCceeeeeCccHHHHHHHHHhcccEEEeccCchh
Q 047655 181 QHVFTLVLDLNETLLYSDWKR-------------------------DRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNM 235 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~-------------------------~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~ 235 (370)
+++..||+|+|.|.+|+...+ ...++++.||++..|+...++.||+.++|.+...
T Consensus 24 ~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~ 103 (390)
T COG5190 24 DKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRA 103 (390)
T ss_pred CcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeecccc
Confidence 457789999999999998766 1347889999999999999999999999999999
Q ss_pred cHHHHHhhcCCCcc-eeEE-E---------------------------------------------ecCcccccCCcccc
Q 047655 236 YVDPVCERLDTNHC-IRYR-L---------------------------------------------SRGATKYQDGKHYR 268 (370)
Q Consensus 236 YA~~Il~~LDP~~~-i~~r-L---------------------------------------------~Re~c~~~~G~~iK 268 (370)
|++.++..+||.|- +.-+ + .++.|.+..+..+.
T Consensus 104 ~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~~~~v~~~~~~~~~~~~~i~ 183 (390)
T COG5190 104 YAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMNSNFVAKSPFSKYESDKDIV 183 (390)
T ss_pred chhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccccccccCCccchhhhhhccccccccccccccc
Confidence 99999999997652 2211 1 11122223334567
Q ss_pred ccccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCChHHhhhHHHHHHHHhCCCC--------cHHHHHHhhcCC
Q 047655 269 DLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPA--------DIRAVLASYEKK 340 (370)
Q Consensus 269 DLs~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~eLl~LipfLe~La~~~v~--------DVR~vL~sy~~~ 340 (370)
|+..+.+++.+.+.+|.....+..++.+-.....|.+++-...+...+..++.++....+ +.|+.|.+|.++
T Consensus 184 d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ 263 (390)
T COG5190 184 DLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGK 263 (390)
T ss_pred CcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhh
Confidence 777778888888888888887777777777777888877666666667777777776667 889999888754
No 12
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.17 E-value=5.4e-06 Score=70.28 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=68.7
Q ss_pred eEEEEeCCCceeccccCCCCce-eeeeCccHHHHHHHHHhc-ccEEEeccCc--------hhcHHHHHhhcCCCcceeEE
Q 047655 184 FTLVLDLNETLLYSDWKRDRGW-RTFKRPGVDAFLEHMAKF-YEIVVYSDQL--------NMYVDPVCERLDTNHCIRYR 253 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~-~v~kRPgld~FL~~Ls~~-YEIVIfTs~~--------~~YA~~Il~~LDP~~~i~~r 253 (370)
..|++|+||||++.. ....+| .....||+.++|++|.+. |.++|-|.+. ..++..+++.+.-...+.
T Consensus 1 k~~~~D~dgtL~~~~-~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 77 (132)
T TIGR01662 1 KGVVLDLDGTLTDDV-PYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL-- 77 (132)
T ss_pred CEEEEeCCCceecCC-CCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE--
Confidence 368999999999642 112222 356789999999999755 9999999998 778888888876542222
Q ss_pred EecCc-ccccCCccccccccC-CCCCCcEEEEeCC
Q 047655 254 LSRGA-TKYQDGKHYRDLSKL-NRDPAKILYVSGH 286 (370)
Q Consensus 254 L~Re~-c~~~~G~~iKDLs~L-gRDls~VIiIDd~ 286 (370)
.+... .+.....+.+=++.+ +-+.+++|+|+|+
T Consensus 78 ~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 78 YACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQ 112 (132)
T ss_pred EECCCCCCCChHHHHHHHHHcCCCChhheEEEcCC
Confidence 22221 112222334556677 4899999999994
No 13
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.01 E-value=3.8e-06 Score=72.20 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=70.2
Q ss_pred eEEEEeCCCceeccccCCCCceee----eeCccHHHHHHHHHh-cccEEEeccC-chhcHHHHHhhcCC-------Ccce
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRT----FKRPGVDAFLEHMAK-FYEIVVYSDQ-LNMYVDPVCERLDT-------NHCI 250 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v----~kRPgld~FL~~Ls~-~YEIVIfTs~-~~~YA~~Il~~LDP-------~~~i 250 (370)
+.||+||||||+.........--+ ...||+.++|++|.+ .+.++|.|+. ...++..+++.+.+ .++|
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f 80 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYF 80 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhh
Confidence 368999999999763211000000 357999999999975 6999999999 89999999988762 2334
Q ss_pred eEEEecCcccccCC-ccccccccCC--CCCCcEEEEeCCCcc
Q 047655 251 RYRLSRGATKYQDG-KHYRDLSKLN--RDPAKILYVSGHAFE 289 (370)
Q Consensus 251 ~~rL~Re~c~~~~G-~~iKDLs~Lg--RDls~VIiIDd~~~~ 289 (370)
.+....+.. ..+ .+.+=+..+| -+.+++|+|||++..
T Consensus 81 ~~~~~~~~~--pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 81 DPLTIGYWL--PKSPRLVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred hhhhhcCCC--cHHHHHHHHHHHhcCCCCcceEEEECCCHhH
Confidence 443332211 112 2234455678 899999999998763
No 14
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.96 E-value=4.2e-05 Score=75.53 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeC-ccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKR-PGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kR-Pgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
..+..+|+||||||+-.+. .+..| ||+.++|++|.+. +-++|+|++...++..+++.++-.++|...+..++
T Consensus 124 ~~~kvIvFDLDgTLi~~~~------~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEE------PVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred ccceEEEEecCCCCcCCCC------ccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCc
Confidence 4577999999999997632 47789 9999999999986 89999999999999999999988877766666554
Q ss_pred cccc----------------CCccccccc---cC--------------CCC-CCcEEEEeCCCccccCCCCccccCCCCC
Q 047655 259 TKYQ----------------DGKHYRDLS---KL--------------NRD-PAKILYVSGHAFESSLQPENCVPIKPYK 304 (370)
Q Consensus 259 c~~~----------------~G~~iKDLs---~L--------------gRD-ls~VIiIDd~~~~~~~qpeN~I~I~~w~ 304 (370)
.... ...++.|.. .| |-. .+.+-+|||-+.+ -..-+|-+.+++.-
T Consensus 198 v~~~kp~~e~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvvl~yL~~~gvn~~KtitLVDDl~~N-n~~YD~fv~v~rcp 276 (301)
T TIGR01684 198 KAEEYSTMSTEDRQYRYVFTKTPFYLNTTDGKRLPKSPRVVLWYLYDLGVNYFKSITLVDDLADN-NFNYDYFVNVSRCP 276 (301)
T ss_pred cccCCCCccccccccceEEecCCeEEeCCCCCcCCCCCeehHHHHHHcCCceeeeEEEeccCccc-CccceeEEEeeeCC
Confidence 4221 112233442 11 222 2346699998765 46778888888776
Q ss_pred CCCCC
Q 047655 305 LEPDD 309 (370)
Q Consensus 305 gd~~D 309 (370)
--.+|
T Consensus 277 ~P~~D 281 (301)
T TIGR01684 277 VPVND 281 (301)
T ss_pred CCchH
Confidence 54444
No 15
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.94 E-value=5e-05 Score=75.08 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=90.5
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeC-ccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKR-PGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kR-Pgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
..+..+|+||||||+..+. .+..| ||+.+.|++|.+. +-++|+|++...++..+++.+.-.++|...+..++
T Consensus 126 ~~~~~i~~D~D~TL~~~~~------~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE------PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred eeccEEEEecCCCccCCCC------ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCC
Confidence 5678999999999998632 47789 9999999999975 89999999999999999999988877777776666
Q ss_pred ccccCC----------------ccccccccC-----------------CCC-CCcEEEEeCCCccccCCCCccccCCCCC
Q 047655 259 TKYQDG----------------KHYRDLSKL-----------------NRD-PAKILYVSGHAFESSLQPENCVPIKPYK 304 (370)
Q Consensus 259 c~~~~G----------------~~iKDLs~L-----------------gRD-ls~VIiIDd~~~~~~~qpeN~I~I~~w~ 304 (370)
.....+ .++.|.... |-. .+.+-+|||-+.. -..-+|-+.+++.-
T Consensus 200 i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~N-n~~YD~fv~v~rcp 278 (303)
T PHA03398 200 KAGEYSRRVIVDNKYKMVFVKKPFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSN-NYSYDYFVNVKRCP 278 (303)
T ss_pred cccccccceeecccceeEEecCceeEeCCcccCCCCCCeehHHHHHHcCcceeccEEEeccCccc-CccceeEEEeeeCC
Confidence 543321 223454422 212 2446699998765 46778888888776
Q ss_pred CCCCC
Q 047655 305 LEPDD 309 (370)
Q Consensus 305 gd~~D 309 (370)
--.+|
T Consensus 279 ~P~~D 283 (303)
T PHA03398 279 EPVND 283 (303)
T ss_pred CCcHH
Confidence 54444
No 16
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.79 E-value=5e-05 Score=69.49 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=81.5
Q ss_pred ceEEEEeCCCceeccccC-----------CC-------CceeeeeCccHHHHHHHHH-hcccEEEeccC-chhcHHHHHh
Q 047655 183 VFTLVLDLNETLLYSDWK-----------RD-------RGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQ-LNMYVDPVCE 242 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~-----------~~-------~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~-~~~YA~~Il~ 242 (370)
+..+|+|||+||....-. +. .++.+..+||+.++|+.|. +-+.+.|-|++ ...++..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 357899999999865421 11 3577899999999999997 45999999988 9999999999
Q ss_pred hcCCC---------cceeEEEecCcccccCCccc----cccccC---CCCCCcEEEEeCCCccccCCCCcccc
Q 047655 243 RLDTN---------HCIRYRLSRGATKYQDGKHY----RDLSKL---NRDPAKILYVSGHAFESSLQPENCVP 299 (370)
Q Consensus 243 ~LDP~---------~~i~~rL~Re~c~~~~G~~i----KDLs~L---gRDls~VIiIDd~~~~~~~qpeN~I~ 299 (370)
.++-. .+|...+.-+... ..++. +.+... |-+.+++|+|||++.....=..+++.
T Consensus 82 ~~~l~~~~~~~~~~~~Fd~iv~~~~~~--~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~ 152 (174)
T TIGR01685 82 TFEITYAGKTVPMHSLFDDRIEIYKPN--KAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT 152 (174)
T ss_pred hCCcCCCCCcccHHHhceeeeeccCCc--hHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence 99866 6677766644321 11222 223222 46789999999998866543444443
No 17
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.69 E-value=1.9e-05 Score=75.95 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=85.4
Q ss_pred CCCCCCCceEEEEeCCCceeccccCCCCce----eeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCc-c
Q 047655 176 LHPAEQHVFTLVLDLNETLLYSDWKRDRGW----RTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNH-C 249 (370)
Q Consensus 176 ~~P~~~~k~TLVLDLDeTLVhs~~~~~~G~----~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~-~ 249 (370)
..+...++..+++|+||||..........| .....||+.++|+.|.+. +.++|.|+.....++.+++.|+-.+ +
T Consensus 151 ~~~~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~ 230 (300)
T PHA02530 151 YTADPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIW 230 (300)
T ss_pred eccCCCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCc
Confidence 344445678999999999997543211112 246799999999999865 9999999999999999999998887 6
Q ss_pred eeEEEecCccc-c--c--CC-----ccccccccCCC-CCCcEEEEeCCCccccCCCCcccc
Q 047655 250 IRYRLSRGATK-Y--Q--DG-----KHYRDLSKLNR-DPAKILYVSGHAFESSLQPENCVP 299 (370)
Q Consensus 250 i~~rL~Re~c~-~--~--~G-----~~iKDLs~LgR-Dls~VIiIDd~~~~~~~qpeN~I~ 299 (370)
|......+.+. + . ++ ...+-|..++. +.+.+++|||++.-...-..++|+
T Consensus 231 f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 231 FDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred hhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 66555554211 0 0 11 11245556677 679999999998765544444443
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.67 E-value=6.9e-05 Score=68.47 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=67.4
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~VIiI 283 (370)
...||+.++|+.|.+ -+.++|.|++...++..+++.++-.++|.+.+..+.+... ...+.+=+..+|-+.+++|+|
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 467999999999985 5899999999999999999999888888888887765432 123345566778889999999
Q ss_pred eCCCcccc
Q 047655 284 SGHAFESS 291 (370)
Q Consensus 284 Dd~~~~~~ 291 (370)
+|++.-..
T Consensus 162 GDs~~Di~ 169 (214)
T PRK13288 162 GDNHHDIL 169 (214)
T ss_pred CCCHHHHH
Confidence 99976443
No 19
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.61 E-value=9.3e-05 Score=72.88 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=73.9
Q ss_pred CceEEEEeCCCceeccccCCC--Cceee-eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhh----cCCCcceeEE
Q 047655 182 HVFTLVLDLNETLLYSDWKRD--RGWRT-FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCER----LDTNHCIRYR 253 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~--~G~~v-~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~----LDP~~~i~~r 253 (370)
.+++||+|||+||+....... .|..+ ..-||+.++|+.|.+ -+-+.|-|+.....+..+++. +....+|...
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~ 81 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDAR 81 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEE
Confidence 478999999999997543222 22222 246899999999985 589999999999999999998 6555545443
Q ss_pred EecCcccccCCccccccccCCCCCCcEEEEeCCCccc
Q 047655 254 LSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFES 290 (370)
Q Consensus 254 L~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~~ 290 (370)
... ...+.....+=+..+|-+++.+|+|||++...
T Consensus 82 ~~~--~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 82 SIN--WGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred EEe--cCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 111 11111122334456788999999999987643
No 20
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.56 E-value=0.00022 Score=63.94 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=64.8
Q ss_pred eEEEEeCCCceecc-ccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCch----hcH-----------HHHHhhcCC
Q 047655 184 FTLVLDLNETLLYS-DWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLN----MYV-----------DPVCERLDT 246 (370)
Q Consensus 184 ~TLVLDLDeTLVhs-~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~----~YA-----------~~Il~~LDP 246 (370)
+.|.||+||||+-. .+. ...-.+..-||+.++|++|.+. |.++|.|++.. .+. ..++..+.-
T Consensus 2 ~~~~~D~Dgtl~~~~~~~-~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV-HEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDV 80 (176)
T ss_pred CEEEEeCCCCEeCCCCCC-CCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 46889999999932 111 1112455679999999999865 99999999875 233 333333221
Q ss_pred CcceeEEEecC-----------cccc---cCCccccccccCCCCCCcEEEEeCCCccc
Q 047655 247 NHCIRYRLSRG-----------ATKY---QDGKHYRDLSKLNRDPAKILYVSGHAFES 290 (370)
Q Consensus 247 ~~~i~~rL~Re-----------~c~~---~~G~~iKDLs~LgRDls~VIiIDd~~~~~ 290 (370)
. |...++.. .|.. ..+.+.+=++++|-+++++|+|+|+..-.
T Consensus 81 ~--~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di 136 (176)
T TIGR00213 81 D--LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDM 136 (176)
T ss_pred C--ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHH
Confidence 1 33333221 2211 12233455677888999999999987643
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.55 E-value=0.00012 Score=66.23 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=65.8
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIi 282 (370)
+...||+.++|+.|.+. +.++|.|++...+++.+++.++-.++|...+..+....... .+.+-++.+|-+.+++++
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~ 163 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVY 163 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEE
Confidence 35789999999999754 99999999999999999999887777777766654322111 234667788889999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|+..-.
T Consensus 164 igDs~~d~ 171 (213)
T TIGR01449 164 VGDSRVDI 171 (213)
T ss_pred eCCCHHHH
Confidence 99987644
No 22
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.51 E-value=0.00024 Score=62.06 Aligned_cols=103 Identities=19% Similarity=0.096 Sum_probs=65.7
Q ss_pred eEEEEeCCCceeccccCC-C-CceeeeeCccHHHHHHHHH-hcccEEEeccCch---------------hcHHHHHhhcC
Q 047655 184 FTLVLDLNETLLYSDWKR-D-RGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQLN---------------MYVDPVCERLD 245 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~-~-~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~---------------~YA~~Il~~LD 245 (370)
++|++|+||||+...... . ........||+.++|++|. +-|.++|-|+... ..+..+++.++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999876422 1 2223567899999999997 5599999999763 45566666665
Q ss_pred CCcceeEEEec-----Cc--cc-ccCCccccccccCCCCCCcEEEEeCCCc
Q 047655 246 TNHCIRYRLSR-----GA--TK-YQDGKHYRDLSKLNRDPAKILYVSGHAF 288 (370)
Q Consensus 246 P~~~i~~rL~R-----e~--c~-~~~G~~iKDLs~LgRDls~VIiIDd~~~ 288 (370)
-.. ...++. +. +. ...+.+.+=+..+|-+.+++|+|+|+..
T Consensus 81 l~~--~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~ 129 (147)
T TIGR01656 81 VAV--DGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLR 129 (147)
T ss_pred Cce--eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHH
Confidence 431 111221 11 11 1111223344556779999999999754
No 23
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.44 E-value=0.00028 Score=64.29 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=63.0
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc--CC-ccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ--DG-KHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~--~G-~~iKDLs~LgRDls~VIi 282 (370)
...+||+.+||+.|.+ -+.++|.|++...++..+++.++-.++|...+..+.+... ++ .+.+=+..++-+.+++|+
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 4578999999999986 5999999999999999999998766666665555443211 11 123455677888899999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|+..-.
T Consensus 172 igD~~~Di 179 (226)
T PRK13222 172 VGDSRNDI 179 (226)
T ss_pred ECCCHHHH
Confidence 99986544
No 24
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.43 E-value=0.00025 Score=66.06 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=64.6
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.++|++|.+. +-+.|-|++...++..+++.++-.++|......+.+... ...+.+-++++|-+.+++|+
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~ 173 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVY 173 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEE
Confidence 35689999999999865 888999999999999999988766677766666654321 11244666788889999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|++.-.
T Consensus 174 IGDs~~Di 181 (229)
T PRK13226 174 VGDDERDI 181 (229)
T ss_pred eCCCHHHH
Confidence 99987643
No 25
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.41 E-value=0.00085 Score=66.04 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=86.2
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeee-CccHHHHHHHHHhcc-cEEEeccCchhcHHHHHhhcCCCcceeEEEecCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFK-RPGVDAFLEHMAKFY-EIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~k-RPgld~FL~~Ls~~Y-EIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
.++-.+|+|||+|||-.+. .+.. =|.+-+-|..|.+.+ -+|+||.|.+++|..-++.+.-.++|.-.+.+..
T Consensus 120 ~~phVIVfDlD~TLItd~~------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~ 193 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG------DVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGN 193 (297)
T ss_pred CCCcEEEEECCCcccccCC------ccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCc
Confidence 3566999999999997643 2333 388889999999876 8889999999999999999997799998888774
Q ss_pred cccc----------------CCccccccccCC-----------------CC-CCcEEEEeCCCccccCCCCccccCCCCC
Q 047655 259 TKYQ----------------DGKHYRDLSKLN-----------------RD-PAKILYVSGHAFESSLQPENCVPIKPYK 304 (370)
Q Consensus 259 c~~~----------------~G~~iKDLs~Lg-----------------RD-ls~VIiIDd~~~~~~~qpeN~I~I~~w~ 304 (370)
..-. ...++.|+..-+ -. .+.+-+|||-+.. ...-+|-+.+++--
T Consensus 194 ~~~~~~~~~~~d~~~~~~f~~~~FylDv~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~N-n~~YD~FVnvkrcp 272 (297)
T PF05152_consen 194 KAGEYNSRVIVDRQYKVIFVSKPFYLDVTNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSN-NYSYDYFVNVKRCP 272 (297)
T ss_pred cCCcCCccceeecccceEEeccceEEeCCcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCccc-CccceeEEEeccCC
Confidence 3211 112233444322 12 1345588888775 46778888888766
Q ss_pred CCCCC
Q 047655 305 LEPDD 309 (370)
Q Consensus 305 gd~~D 309 (370)
--.+|
T Consensus 273 ~P~~D 277 (297)
T PF05152_consen 273 VPVND 277 (297)
T ss_pred CCchH
Confidence 54444
No 26
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.41 E-value=0.00017 Score=69.47 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=68.1
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiI 283 (370)
...||+.++|++|.+ -|-++|-|++...++..+++.++-.++|...+..+.+..... .+.+=+.++|-+.+++|+|
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 357999999999985 499999999999999999999987778888888776643222 3456677888899999999
Q ss_pred eCCCcccc
Q 047655 284 SGHAFESS 291 (370)
Q Consensus 284 Dd~~~~~~ 291 (370)
+|+..-..
T Consensus 189 gDs~~Di~ 196 (260)
T PLN03243 189 GNSNSSVE 196 (260)
T ss_pred cCCHHHHH
Confidence 99876443
No 27
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.41 E-value=0.00036 Score=67.18 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=63.6
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc--CCc-cccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ--DGK-HYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~--~G~-~iKDLs~LgRDls~VIiI 283 (370)
..+||+.++|+.|.+ .+.++|.|++...++..+++.++-.++|.+..+.+.+... +.. +.+=+..+|-+.+++|+|
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~I 180 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFV 180 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEE
Confidence 358999999999975 6999999999999999999998777778777666644321 111 223445678889999999
Q ss_pred eCCCcccc
Q 047655 284 SGHAFESS 291 (370)
Q Consensus 284 Dd~~~~~~ 291 (370)
+|+..-..
T Consensus 181 GD~~~Di~ 188 (272)
T PRK13223 181 GDSRSDVL 188 (272)
T ss_pred CCCHHHHH
Confidence 99876543
No 28
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.36 E-value=0.00052 Score=61.62 Aligned_cols=105 Identities=14% Similarity=0.033 Sum_probs=67.3
Q ss_pred ceEEEEeCCCceeccccCCCCc-eeeeeCccHHHHHHHHHhc-ccEEEeccCch---------------hcHHHHHhhcC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRG-WRTFKRPGVDAFLEHMAKF-YEIVVYSDQLN---------------MYVDPVCERLD 245 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G-~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~---------------~YA~~Il~~LD 245 (370)
.+.|++|+||||+...-..... -.+...||+.++|++|.+. |.+.|-|+... .+...+++.++
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 3678999999997654222111 1255789999999999975 99999998763 22333444332
Q ss_pred CCcceeEEEecCccc-----c---cCCccccccccCCCCCCcEEEEeCCCcc
Q 047655 246 TNHCIRYRLSRGATK-----Y---QDGKHYRDLSKLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 246 P~~~i~~rL~Re~c~-----~---~~G~~iKDLs~LgRDls~VIiIDd~~~~ 289 (370)
- .|...++...+. . ....+.+-+..+|-+.+++++|+|+..-
T Consensus 83 ~--~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~D 132 (181)
T PRK08942 83 G--RLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRD 132 (181)
T ss_pred C--ccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHH
Confidence 1 244444433221 1 1122345667788899999999998753
No 29
>PRK11587 putative phosphatase; Provisional
Probab=97.32 E-value=0.00056 Score=63.01 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=59.5
Q ss_pred eeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIiI 283 (370)
...||+.+||++|. +-+.+.|-|++...++..+++...- ..+...+..+++.... ..+.+-+..+|-.++++|+|
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~i 161 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVV 161 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEE
Confidence 45899999999997 5699999999988887777765543 2344455555443221 23456677889899999999
Q ss_pred eCCCccc
Q 047655 284 SGHAFES 290 (370)
Q Consensus 284 Dd~~~~~ 290 (370)
+|++.-.
T Consensus 162 gDs~~di 168 (218)
T PRK11587 162 EDAPAGV 168 (218)
T ss_pred ecchhhh
Confidence 9998644
No 30
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.31 E-value=0.00034 Score=63.07 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=55.4
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCc----ceeEEEecCcccccCCccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNH----CIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~----~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.++|+.|.+.|.+++-|+........+++.+.-.+ +|...+..+.+..+...+.+-+..+| .+.+|+
T Consensus 73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~ 150 (197)
T PHA02597 73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCF 150 (197)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEE
Confidence 347999999999999888877777765555555666653332 45666665554332222334455667 678999
Q ss_pred EeCCCccccC
Q 047655 283 VSGHAFESSL 292 (370)
Q Consensus 283 IDd~~~~~~~ 292 (370)
|||+......
T Consensus 151 vgDs~~di~a 160 (197)
T PHA02597 151 VDDLAHNLDA 160 (197)
T ss_pred eCCCHHHHHH
Confidence 9999886543
No 31
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.29 E-value=0.00059 Score=63.77 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=64.5
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiI 283 (370)
...||+.++|+.|.+ -|.+.|-|++...++..+++.+.-..+|...+..+....... .+.+=+.++|-+.+++|+|
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 357999999999986 589999999999999999998876677887776654432111 2345567788899999999
Q ss_pred eCCCccc
Q 047655 284 SGHAFES 290 (370)
Q Consensus 284 Dd~~~~~ 290 (370)
+|++...
T Consensus 173 gDs~~di 179 (224)
T PRK14988 173 DDSEPIL 179 (224)
T ss_pred cCCHHHH
Confidence 9997654
No 32
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.26 E-value=0.00015 Score=66.18 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=58.4
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCc-----------cccc-CCccc-ccccc
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA-----------TKYQ-DGKHY-RDLSK 272 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~-----------c~~~-~G~~i-KDLs~ 272 (370)
+..+||+.+||+.|.+ -+.++|.|++...++..+++.+.-.+++...+.-+. +... .+..+ +=+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 163 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRK 163 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHH
Confidence 3579999999999987 599999999999999999999865555543322111 1000 11111 23345
Q ss_pred CCCCCCcEEEEeCCCcccc
Q 047655 273 LNRDPAKILYVSGHAFESS 291 (370)
Q Consensus 273 LgRDls~VIiIDd~~~~~~ 291 (370)
++-+.+++|+|+|+..-..
T Consensus 164 ~~~~~~~~i~iGDs~~Di~ 182 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLS 182 (219)
T ss_pred cCCCHHHEEEEECCHHHHH
Confidence 6778899999999866443
No 33
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.25 E-value=0.00036 Score=67.66 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=60.5
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCCccccccccCCCCCCcEEEEeCC
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGH 286 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiIDd~ 286 (370)
..-||+.++|++|.+ -+.+.|.|++...+++.+++.++-.++|......+....+.-.+.+=+.++|-+.+++|+|+|+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 346999999999985 5899999999999999999999877777766544332111111123334567788999999999
Q ss_pred Cccc
Q 047655 287 AFES 290 (370)
Q Consensus 287 ~~~~ 290 (370)
+.-.
T Consensus 222 ~~Di 225 (273)
T PRK13225 222 TRDV 225 (273)
T ss_pred HHHH
Confidence 7643
No 34
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.14 E-value=0.00026 Score=66.26 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=70.4
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.+||+.|... .-+.+=|++....+..+++.+.-.++|....+.++.... .-.|.+-..+||-+++++|+
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVV 164 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEE
Confidence 46799999999999977 999999999999999999999888888888887765432 22467888899999999999
Q ss_pred EeCCCc
Q 047655 283 VSGHAF 288 (370)
Q Consensus 283 IDd~~~ 288 (370)
|+|++.
T Consensus 165 iEDs~~ 170 (221)
T COG0637 165 VEDSPA 170 (221)
T ss_pred Eecchh
Confidence 999876
No 35
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.14 E-value=0.00087 Score=68.48 Aligned_cols=83 Identities=8% Similarity=0.040 Sum_probs=68.9
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiI 283 (370)
...||+.+||+.|.+ .+.+.|-|+....+++.+++.++-.++|...+..+.+..... .+.+-+..+|-+.+++|+|
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 357999999999975 599999999999999999999988888999988887643222 3456777889999999999
Q ss_pred eCCCccc
Q 047655 284 SGHAFES 290 (370)
Q Consensus 284 Dd~~~~~ 290 (370)
+|+..-.
T Consensus 296 GDS~~DI 302 (381)
T PLN02575 296 GNSNQTV 302 (381)
T ss_pred cCCHHHH
Confidence 9977643
No 36
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.06 E-value=0.0023 Score=57.48 Aligned_cols=103 Identities=17% Similarity=0.024 Sum_probs=69.8
Q ss_pred eEEEEeCCCceecccc-CC--CCceeeeeCccHHHHHHHHHh-cccEEEeccC---------------chhcHHHHHhhc
Q 047655 184 FTLVLDLNETLLYSDW-KR--DRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQ---------------LNMYVDPVCERL 244 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~-~~--~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~---------------~~~YA~~Il~~L 244 (370)
+.|.||.||||++... .. ..--.+..=||+.++|++|.+ -|.++|.|+. ...++..+++.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 5689999999999421 10 000135677999999999986 5999999996 356777888887
Q ss_pred CCCcceeEEEec-----CcccccC---CccccccccCCCCCCcEEEEeCCCc
Q 047655 245 DTNHCIRYRLSR-----GATKYQD---GKHYRDLSKLNRDPAKILYVSGHAF 288 (370)
Q Consensus 245 DP~~~i~~rL~R-----e~c~~~~---G~~iKDLs~LgRDls~VIiIDd~~~ 288 (370)
+-. |...++. +.|.... +.+..-+..+|-+.+++++|.|+..
T Consensus 82 gl~--fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~ 131 (161)
T TIGR01261 82 GII--FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRET 131 (161)
T ss_pred CCc--eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHH
Confidence 765 5545442 3332221 2223344556778999999999854
No 37
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.03 E-value=0.00056 Score=62.52 Aligned_cols=82 Identities=6% Similarity=0.031 Sum_probs=61.9
Q ss_pred eeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCC--cceeEEEecCcccc-c-CC-ccccccccCCCC-CCcE
Q 047655 208 FKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTN--HCIRYRLSRGATKY-Q-DG-KHYRDLSKLNRD-PAKI 280 (370)
Q Consensus 208 ~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~--~~i~~rL~Re~c~~-~-~G-~~iKDLs~LgRD-ls~V 280 (370)
...||+.+||.+|. +-|.+.|-|++...++..+++.++-. .+|...+..+.-.. + +. .+.+=+.++|-. .+++
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 166 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSV 166 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHe
Confidence 47799999999996 56999999999999999999998765 67777766554211 1 11 223445677765 7899
Q ss_pred EEEeCCCcc
Q 047655 281 LYVSGHAFE 289 (370)
Q Consensus 281 IiIDd~~~~ 289 (370)
|+|+|++.-
T Consensus 167 ~~igD~~~D 175 (220)
T TIGR03351 167 AVAGDTPND 175 (220)
T ss_pred EEeCCCHHH
Confidence 999998754
No 38
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.01 E-value=0.0012 Score=59.38 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=67.2
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCc-hhcHHHHHhhcCCCcceeEEEecCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQL-NMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~-~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
.+-..||+|+||||.... ....-||+.++|++|.+. +.++|.|++. ...+..+++.++-..+ + ..
T Consensus 23 ~~v~~vv~D~Dgtl~~~~-------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~-----~-~~ 89 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD-------HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL-----P-HA 89 (170)
T ss_pred CCCCEEEEecCCccccCC-------CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE-----c-CC
Confidence 456789999999999752 134569999999999866 9999999998 6777777776653211 1 11
Q ss_pred ccccCCccccccccCCCCCCcEEEEeCCCc
Q 047655 259 TKYQDGKHYRDLSKLNRDPAKILYVSGHAF 288 (370)
Q Consensus 259 c~~~~G~~iKDLs~LgRDls~VIiIDd~~~ 288 (370)
.+.....+.+=+..+|-+.+++++|+|+..
T Consensus 90 ~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~ 119 (170)
T TIGR01668 90 VKPPGCAFRRAHPEMGLTSEQVAVVGDRLF 119 (170)
T ss_pred CCCChHHHHHHHHHcCCCHHHEEEECCcch
Confidence 222222233445677888899999999973
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=96.98 E-value=0.0025 Score=56.12 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=40.8
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEe
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLS 255 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~ 255 (370)
+..+||+.++|+.|.+. +.++|-|++...+++.+++.++-.++|...+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEec
Confidence 46899999999999764 89999999999999999998865555655553
No 40
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.97 E-value=0.0027 Score=57.21 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=64.2
Q ss_pred ceEEEEeCCCceeccccC-----CCCceeeeeCccHHHHHHHHH-hcccEEEeccCchh------------cHHHHHhhc
Q 047655 183 VFTLVLDLNETLLYSDWK-----RDRGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQLNM------------YVDPVCERL 244 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~-----~~~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~------------YA~~Il~~L 244 (370)
..+++||+||||+-.... ....|.. .-||+.+.|+.|. +-|.++|-|++... +++.+++.+
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~-~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~ 91 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKVFPTSASDWRF-LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL 91 (166)
T ss_pred CcEEEEeCCCceEecCCCCcccCChHHeEE-ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc
Confidence 467899999999964321 1122332 3499999999996 57999999997663 466777777
Q ss_pred CCCcceeEEEecCcccc-c--CCccccccccCC--CCCCcEEEEeCCC
Q 047655 245 DTNHCIRYRLSRGATKY-Q--DGKHYRDLSKLN--RDPAKILYVSGHA 287 (370)
Q Consensus 245 DP~~~i~~rL~Re~c~~-~--~G~~iKDLs~Lg--RDls~VIiIDd~~ 287 (370)
+-.. ...+.-+.... + .+.+..=+..+| -+.+++++|.|++
T Consensus 92 gl~~--~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 92 KVPI--QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred CCCE--EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 6532 22222222111 1 112222344556 6889999999986
No 41
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.88 E-value=0.00099 Score=60.49 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=60.1
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhc-CCCcceeEEEecCcccccC--C-ccccccccCCCCCCcEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERL-DTNHCIRYRLSRGATKYQD--G-KHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~L-DP~~~i~~rL~Re~c~~~~--G-~~iKDLs~LgRDls~VIi 282 (370)
...||+.++|+.|.+ -|.++|-|++....+..++... .-..+|...++.+.+.... . .+..=++.+|-+++++|+
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 368999999999975 5999999999877666554432 2234577777766654422 2 234567788999999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|||++...
T Consensus 164 vgD~~~di 171 (199)
T PRK09456 164 FDDNADNI 171 (199)
T ss_pred eCCCHHHH
Confidence 99997653
No 42
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.82 E-value=0.00092 Score=57.61 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=57.1
Q ss_pred eCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc-CC-ccccccccCCCCCCcEEEEeC
Q 047655 209 KRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ-DG-KHYRDLSKLNRDPAKILYVSG 285 (370)
Q Consensus 209 kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~-~G-~~iKDLs~LgRDls~VIiIDd 285 (370)
..||+.++|+.|. +-+.+.|.|++....+..+++.+ -..+|...+..+++..+ +. .+.+=+..+|-+. ++|+|.|
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iGD 142 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVGD 142 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEeC
Confidence 4599999999996 45899999999999999999985 33456666666654311 11 2334456677777 9999999
Q ss_pred CCc
Q 047655 286 HAF 288 (370)
Q Consensus 286 ~~~ 288 (370)
+..
T Consensus 143 s~~ 145 (154)
T TIGR01549 143 NLN 145 (154)
T ss_pred CHH
Confidence 853
No 43
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.80 E-value=0.014 Score=57.00 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCceEEEEeCCCceeccccC------CCC-----ce-------
Q 047655 144 AKAVEIYLDLRRLIEEQVRGFTEPTSDKLLPDLHPAEQHVFTLVLDLNETLLYSDWK------RDR-----GW------- 205 (370)
Q Consensus 144 ~~~~~~y~~~r~~~~~~~~~f~eP~~~~LLP~~~P~~~~k~TLVLDLDeTLVhs~~~------~~~-----G~------- 205 (370)
+...+.|...+..+....+ ++ ..+++.+|+|||||++....- ... .|
T Consensus 51 al~~q~~n~A~~~~~~~~~---~~------------~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~ 115 (266)
T TIGR01533 51 ALYLQAYNLAKMRLDNNLK---KV------------KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAA 115 (266)
T ss_pred HHHHHHHHHHHHHHHHHHh---cc------------CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcC
Confidence 3445678777777765542 11 135789999999999876521 111 12
Q ss_pred eeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcc----eeEEEecCc
Q 047655 206 RTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHC----IRYRLSRGA 258 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~----i~~rL~Re~ 258 (370)
....-||+.+||+++.+ -..|+|.|.......+..++.|.-.|+ ..+.+.|+.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~ 173 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKD 173 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCC
Confidence 24567999999999965 478999999877776655555544433 456777763
No 44
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.80 E-value=0.0014 Score=59.05 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=54.2
Q ss_pred eeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEec--------CcccccCCccccccccCCCCCCc
Q 047655 208 FKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSR--------GATKYQDGKHYRDLSKLNRDPAK 279 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~R--------e~c~~~~G~~iKDLs~LgRDls~ 279 (370)
...||+.+||..|.+.+.++|-|++...+++.+++.++-..++...+.- ..+...+++ ..=+..++....+
T Consensus 68 ~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k-~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGK-RQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchH-HHHHHHHHHhCCe
Confidence 3579999999999877999999999999999999998755554433211 111000111 0011223344578
Q ss_pred EEEEeCCCccc
Q 047655 280 ILYVSGHAFES 290 (370)
Q Consensus 280 VIiIDd~~~~~ 290 (370)
+|+|-|+..-.
T Consensus 147 ~v~iGDs~~D~ 157 (205)
T PRK13582 147 VIAAGDSYNDT 157 (205)
T ss_pred EEEEeCCHHHH
Confidence 99999987654
No 45
>PRK06769 hypothetical protein; Validated
Probab=96.80 E-value=0.0023 Score=57.70 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=63.5
Q ss_pred eEEEEeCCCceecccc-CCCCceeeeeCccHHHHHHHHHh-cccEEEeccCchh-----cHHHHHhhcCCCcceeEEEec
Q 047655 184 FTLVLDLNETLLYSDW-KRDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNM-----YVDPVCERLDTNHCIRYRLSR 256 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~-~~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~-----YA~~Il~~LDP~~~i~~rL~R 256 (370)
..|.||+||||.-... .... .+..-||+.++|++|.+ -|.+.|.|+.... -...+...+...++..+..+-
T Consensus 5 ~~~~~d~d~~~~~~~~~~~~~--~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 5 QAIFIDRDGTIGGDTTIHYPG--SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred cEEEEeCCCcccCCCCCCCHH--HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 4689999999952211 1111 24567999999999975 5999999987641 112333333333332222221
Q ss_pred ----Ccc---cccCCccccccccCCCCCCcEEEEeCCCcc
Q 047655 257 ----GAT---KYQDGKHYRDLSKLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 257 ----e~c---~~~~G~~iKDLs~LgRDls~VIiIDd~~~~ 289 (370)
+.+ +...+.+.+-++.+|-+++++|+|+|++.-
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~D 122 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTD 122 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHH
Confidence 111 112223456677788899999999998753
No 46
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.73 E-value=0.0055 Score=58.75 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=55.8
Q ss_pred CceEEEEeCCCceeccccCCCCc------------------------eeeeeCcc--HHHHHHHHHh-cccEEEeccC--
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRG------------------------WRTFKRPG--VDAFLEHMAK-FYEIVVYSDQ-- 232 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G------------------------~~v~kRPg--ld~FL~~Ls~-~YEIVIfTs~-- 232 (370)
+++.+++||||||+.+..--..| +.-...|+ +.+||+++.+ -+.|+|-|+.
T Consensus 62 ~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~ 141 (237)
T TIGR01672 62 PPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTP 141 (237)
T ss_pred CCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 56799999999999987510011 11223455 9999999986 4899999997
Q ss_pred --chhcHHHHHhhcCCCcceeEEEecCc
Q 047655 233 --LNMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 233 --~~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
...+++.+++.+.-.+++...+..+.
T Consensus 142 ~k~~~~a~~ll~~lGi~~~f~~i~~~d~ 169 (237)
T TIGR01672 142 GKTDTVSKTLAKNFHIPAMNPVIFAGDK 169 (237)
T ss_pred CcCHHHHHHHHHHhCCchheeEEECCCC
Confidence 66799999998877666665555443
No 47
>PLN02940 riboflavin kinase
Probab=96.72 E-value=0.0016 Score=66.16 Aligned_cols=83 Identities=10% Similarity=0.158 Sum_probs=64.9
Q ss_pred eeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHh-hcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEE
Q 047655 208 FKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCE-RLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~-~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIi 282 (370)
...||+.++|++|.+. +.+.|-|++...++..+++ .++=.++|...+..+++.... ..+..-++.+|-+.+++|+
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 4579999999999755 8999999999999998887 566567788888888764321 2344566777888999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|+..-.
T Consensus 173 VGDs~~Di 180 (382)
T PLN02940 173 IEDSLPGV 180 (382)
T ss_pred EeCCHHHH
Confidence 99987643
No 48
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.64 E-value=0.0055 Score=56.07 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=62.3
Q ss_pred CceEEEEeCCCceeccccCC-----------------CCceeeeeCccHHHHHHHHHh-cccEEEecc-CchhcHHHHHh
Q 047655 182 HVFTLVLDLNETLLYSDWKR-----------------DRGWRTFKRPGVDAFLEHMAK-FYEIVVYSD-QLNMYVDPVCE 242 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~-----------------~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs-~~~~YA~~Il~ 242 (370)
-+..+|+|||.||....-.. ..|..+..-|++...|+.|.+ -.+|.+=|. .....|..+++
T Consensus 2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 46789999999998764221 256778899999999999996 688888884 56889999999
Q ss_pred hcCCC----------cceeEEEecCcccccCCccccccc-cCCCCCCcEEEEeCCCcc
Q 047655 243 RLDTN----------HCIRYRLSRGATKYQDGKHYRDLS-KLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 243 ~LDP~----------~~i~~rL~Re~c~~~~G~~iKDLs-~LgRDls~VIiIDd~~~~ 289 (370)
.|+-. .+|.+.=.-..++ -.|++.|. ..|-+.+.+|++||...+
T Consensus 82 ~l~i~~~~~~~~~~~~~F~~~eI~~gsK---~~Hf~~i~~~tgI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 82 LLEIDDADGDGVPLIEYFDYLEIYPGSK---TTHFRRIHRKTGIPYEEMLFFDDESRN 136 (169)
T ss_dssp HTT-C----------CCECEEEESSS-H---HHHHHHHHHHH---GGGEEEEES-HHH
T ss_pred hcCCCccccccccchhhcchhheecCch---HHHHHHHHHhcCCChhHEEEecCchhc
Confidence 98866 4454431111111 13455554 457788999999997653
No 49
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.45 E-value=0.007 Score=52.90 Aligned_cols=71 Identities=20% Similarity=0.138 Sum_probs=48.9
Q ss_pred eEEEEeCCCceeccccCCCCcee-eeeCccHHHHHHHH-HhcccEEEeccCchhcHH------------HHHhhcCCCcc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWR-TFKRPGVDAFLEHM-AKFYEIVVYSDQLNMYVD------------PVCERLDTNHC 249 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~-v~kRPgld~FL~~L-s~~YEIVIfTs~~~~YA~------------~Il~~LDP~~~ 249 (370)
+.+|+||||||+.... ..|. ....+.+.+-|+.+ .+-++|++.|+-...... .+.+-|+-+++
T Consensus 2 K~i~~DiDGTL~~~~~---~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~i 78 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN---GDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNV 78 (126)
T ss_pred CEEEEeCCCCcccCCC---CcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCC
Confidence 4789999999976421 1221 34677888888888 467999999998777665 66667766664
Q ss_pred -eeEEEecC
Q 047655 250 -IRYRLSRG 257 (370)
Q Consensus 250 -i~~rL~Re 257 (370)
....+.|.
T Consensus 79 pYd~l~~~k 87 (126)
T TIGR01689 79 PYDEIYVGK 87 (126)
T ss_pred CCceEEeCC
Confidence 44455544
No 50
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.35 E-value=0.011 Score=54.64 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhc-CCCcce--eEEEecCcccc------------cCCc-cccc
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERL-DTNHCI--RYRLSRGATKY------------QDGK-HYRD 269 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~L-DP~~~i--~~rL~Re~c~~------------~~G~-~iKD 269 (370)
+..+||+.+||++|.+. +.++|.|++...+++++++.+ ....++ ...+..+.... ..|. ..+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 46799999999999854 999999999999999999986 222233 22222111110 0011 1123
Q ss_pred cccCCCCCCcEEEEeCCCccc
Q 047655 270 LSKLNRDPAKILYVSGHAFES 290 (370)
Q Consensus 270 Ls~LgRDls~VIiIDd~~~~~ 290 (370)
+..++.+..++|+|-|+..-.
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di 173 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDL 173 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHH
Confidence 344566677899999886643
No 51
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.35 E-value=0.0064 Score=51.77 Aligned_cols=83 Identities=25% Similarity=0.317 Sum_probs=67.6
Q ss_pred eeeeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEE
Q 047655 206 RTFKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKIL 281 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VI 281 (370)
.....||+.+||..|. +.+.++|.|.+...++..+++.+.-..+|...++.+.+..... .+.+=+..+|-+.+++|
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 4678999999999999 8899999999999999999999987788888887765543211 23345566788899999
Q ss_pred EEeCCCc
Q 047655 282 YVSGHAF 288 (370)
Q Consensus 282 iIDd~~~ 288 (370)
+|||++.
T Consensus 155 ~vgD~~~ 161 (176)
T PF13419_consen 155 FVGDSPS 161 (176)
T ss_dssp EEESSHH
T ss_pred EEeCCHH
Confidence 9999874
No 52
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.21 E-value=0.016 Score=58.84 Aligned_cols=104 Identities=17% Similarity=0.080 Sum_probs=65.7
Q ss_pred ceEEEEeCCCceeccccC---CCCceeeeeCccHHHHHHHHHh-cccEEEeccC---------------chhcHHHHHhh
Q 047655 183 VFTLVLDLNETLLYSDWK---RDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQ---------------LNMYVDPVCER 243 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~---~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~---------------~~~YA~~Il~~ 243 (370)
++.|+||-||||+..... ...-..+...||+.+||++|.+ -|.++|.|++ ...++..+++.
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~ 81 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES 81 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH
Confidence 578999999999986421 1112247889999999999986 5999999995 23345555555
Q ss_pred cCCCcceeEEEec-----CcccccCC--ccc-cccccCCCCCCcEEEEeCCCc
Q 047655 244 LDTNHCIRYRLSR-----GATKYQDG--KHY-RDLSKLNRDPAKILYVSGHAF 288 (370)
Q Consensus 244 LDP~~~i~~rL~R-----e~c~~~~G--~~i-KDLs~LgRDls~VIiIDd~~~ 288 (370)
+.-. |...++. +.|..... ..+ .=+..++-+++++++|-|+..
T Consensus 82 ~gl~--fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~s 132 (354)
T PRK05446 82 QGIK--FDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRET 132 (354)
T ss_pred cCCc--eeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHH
Confidence 4332 4333333 33322111 112 222345668899999988753
No 53
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.19 E-value=0.019 Score=51.27 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=88.5
Q ss_pred EEEEeCCCceeccc----cCC------------CCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 185 TLVLDLNETLLYSD----WKR------------DRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 185 TLVLDLDeTLVhs~----~~~------------~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
.+|||+|+||.... ..+ ..|--+..+|++.+||+.+..- |-|-.+|=.-..-|-+.+..||-.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~ 81 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL 81 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh
Confidence 57999999998532 111 2577789999999999999854 666688888889999999999999
Q ss_pred cceeEEEecCcccccCCccccccccCC------CCCCcEEEEeCCCccccC---CCCccccCCCCCCCCCChHHhhhHHH
Q 047655 248 HCIRYRLSRGATKYQDGKHYRDLSKLN------RDPAKILYVSGHAFESSL---QPENCVPIKPYKLEPDDTALLDLIPF 318 (370)
Q Consensus 248 ~~i~~rL~Re~c~~~~G~~iKDLs~Lg------RDls~VIiIDd~~~~~~~---qpeN~I~I~~w~gd~~D~eLl~Lipf 318 (370)
++|.|.....|-.. .-...+=|..++ --++++|++||+...+.- .-+|.=.++.|.+- .--..++++
T Consensus 82 ~yFhy~ViePhP~K-~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~Di---~c~~ei~sl 157 (164)
T COG4996 82 QYFHYIVIEPHPYK-FLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKDI---SCYSEIFSL 157 (164)
T ss_pred hhEEEEEecCCChh-HHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecch---HHHHHHHHH
Confidence 99998876554311 111112222221 246899999999876532 45565556666543 122344555
Q ss_pred HHH
Q 047655 319 LEY 321 (370)
Q Consensus 319 Le~ 321 (370)
|..
T Consensus 158 Ls~ 160 (164)
T COG4996 158 LSH 160 (164)
T ss_pred HHh
Confidence 543
No 54
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.19 E-value=0.014 Score=55.93 Aligned_cols=77 Identities=8% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCceEEEEeCCCceeccccC---CCC----c---e----------------eeeeCccHHHHHHHH-HhcccEEEecc--
Q 047655 181 QHVFTLVLDLNETLLYSDWK---RDR----G---W----------------RTFKRPGVDAFLEHM-AKFYEIVVYSD-- 231 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~---~~~----G---~----------------~v~kRPgld~FL~~L-s~~YEIVIfTs-- 231 (370)
++|+.+|+|+|||+++++.- ... | | ....-||+.+||+++ .+-++|++-|+
T Consensus 61 ~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~ 140 (237)
T PRK11009 61 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRT 140 (237)
T ss_pred CCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45779999999999985321 011 0 1 123445599999999 56799999998
Q ss_pred --CchhcHHHHHhhcCC--CcceeEEEecC
Q 047655 232 --QLNMYVDPVCERLDT--NHCIRYRLSRG 257 (370)
Q Consensus 232 --~~~~YA~~Il~~LDP--~~~i~~rL~Re 257 (370)
....+++.+++.+.- ..++...+..+
T Consensus 141 ~~k~~~t~~~Llk~~gip~~~~f~vil~gd 170 (237)
T PRK11009 141 ATKTETVSKTLADDFHIPADNMNPVIFAGD 170 (237)
T ss_pred CcccHHHHHHHHHHcCCCcccceeEEEcCC
Confidence 346688888887664 45555444444
No 55
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.15 E-value=0.011 Score=62.79 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCceEEEEeCCCceeccccCC-----CCceeeeeCccHHHHHHHHHh-cccEEEeccCch------------hcHHHHHh
Q 047655 181 QHVFTLVLDLNETLLYSDWKR-----DRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLN------------MYVDPVCE 242 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~-----~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~------------~YA~~Il~ 242 (370)
...+.+.||+||||+...... ...|. ..-||+.+.|+.|.+ -|.|+|+|+... ..++.+++
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~-~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~ 244 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQ-IIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVA 244 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHee-ecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHH
Confidence 356899999999999753211 12343 245999999999986 599999999777 35777888
Q ss_pred hcCCCcceeEEEecCccccc---CCcc---ccccc-cCCCCCCcEEEEeCCCc
Q 047655 243 RLDTNHCIRYRLSRGATKYQ---DGKH---YRDLS-KLNRDPAKILYVSGHAF 288 (370)
Q Consensus 243 ~LDP~~~i~~rL~Re~c~~~---~G~~---iKDLs-~LgRDls~VIiIDd~~~ 288 (370)
.|+-. |...+.-+.|.+. .|.+ .+++. .++-|++++++|-|.+.
T Consensus 245 ~lgip--fdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaag 295 (526)
T TIGR01663 245 KLGVP--FQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAG 295 (526)
T ss_pred HcCCc--eEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCccc
Confidence 77643 5544444444432 2322 23332 23468899999998763
No 56
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.02 E-value=0.011 Score=51.77 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=61.8
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.+||+.|.+ -|.++|.|++...+ ..++..++-.++|...++.+.+.... ..+.+=+..+|.+.+++|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 5678999999999986 59999999999888 77776677777788877765443221 1233455677889999999
Q ss_pred EeCCCc
Q 047655 283 VSGHAF 288 (370)
Q Consensus 283 IDd~~~ 288 (370)
|||++.
T Consensus 163 vgD~~~ 168 (183)
T TIGR01509 163 VDDSPA 168 (183)
T ss_pred EcCCHH
Confidence 999865
No 57
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=95.97 E-value=0.014 Score=53.17 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=66.4
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.+||++|.+. +-++|.|++...++...++.++-..+|...+..+.+.... ..+.+=++.+|-+.+++|+
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 172 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVM 172 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEE
Confidence 56789999999999876 9999999999999999999998888888887776554321 1344567788888999999
Q ss_pred EeCCC
Q 047655 283 VSGHA 287 (370)
Q Consensus 283 IDd~~ 287 (370)
|.|++
T Consensus 173 igDs~ 177 (221)
T TIGR02253 173 VGDRL 177 (221)
T ss_pred ECCCh
Confidence 99987
No 58
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.94 E-value=0.0084 Score=55.77 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=41.0
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYR 253 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~r 253 (370)
+..+||+.+||+.+.+.+.++|-|++...+++++++.+.-..++..+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~~~an~ 113 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHK 113 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCchhhcee
Confidence 46799999999999988899999999999999999998866655543
No 59
>PRK08238 hypothetical protein; Validated
Probab=95.91 E-value=0.021 Score=59.95 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCceEEEEeCCCceeccccCCC---------------------Cc----------------eeeeeCccHHHHHHHHH-h
Q 047655 181 QHVFTLVLDLNETLLYSDWKRD---------------------RG----------------WRTFKRPGVDAFLEHMA-K 222 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~---------------------~G----------------~~v~kRPgld~FL~~Ls-~ 222 (370)
.+...||+||||||++++.-.+ .| -....+||+.++|+++. +
T Consensus 8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~ 87 (479)
T PRK08238 8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA 87 (479)
T ss_pred CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence 4556899999999999973211 01 01246899999999996 5
Q ss_pred cccEEEeccCchhcHHHHHhhcCCCcceeEEEecC
Q 047655 223 FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRG 257 (370)
Q Consensus 223 ~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re 257 (370)
-+.++|-|++.+.+++++++.+.- |+..+..+
T Consensus 88 G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd 119 (479)
T PRK08238 88 GRKLVLATASDERLAQAVAAHLGL---FDGVFASD 119 (479)
T ss_pred CCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCC
Confidence 599999999999999999999853 55555444
No 60
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.81 E-value=0.0071 Score=53.94 Aligned_cols=80 Identities=11% Similarity=0.178 Sum_probs=63.6
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccc-------cCCccccccccCCCCCCc
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKY-------QDGKHYRDLSKLNRDPAK 279 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~-------~~G~~iKDLs~LgRDls~ 279 (370)
+...||+.++|+.|. +.++|.|++...++..+++.++-.++|...+..+.... ....+.+=+..+|.++++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 446799999999998 78999999999999999999877677887777654322 222344566778999999
Q ss_pred EEEEeCCCc
Q 047655 280 ILYVSGHAF 288 (370)
Q Consensus 280 VIiIDd~~~ 288 (370)
+++|+|++.
T Consensus 161 ~l~vgD~~~ 169 (184)
T TIGR01993 161 AIFFDDSAR 169 (184)
T ss_pred eEEEeCCHH
Confidence 999999865
No 61
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=95.65 E-value=0.025 Score=51.31 Aligned_cols=81 Identities=7% Similarity=0.075 Sum_probs=67.0
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccC-CCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKL-NRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~L-gRDls~VIi 282 (370)
+..+||+.++|++|.+.|.++|-|++...++..+++.+.-.++|.+.+..+.+.... ..+.+-++.+ |-+.+++|+
T Consensus 96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 567899999999999889999999999999999999988778888888877654321 1234567788 888999999
Q ss_pred EeCCC
Q 047655 283 VSGHA 287 (370)
Q Consensus 283 IDd~~ 287 (370)
|+|+.
T Consensus 176 igD~~ 180 (224)
T TIGR02254 176 IGDSL 180 (224)
T ss_pred ECCCc
Confidence 99986
No 62
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.60 E-value=0.017 Score=57.59 Aligned_cols=84 Identities=11% Similarity=0.192 Sum_probs=57.0
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEe-cCc---------cccc--CCcccccc-cc
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLS-RGA---------TKYQ--DGKHYRDL-SK 272 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~-Re~---------c~~~--~G~~iKDL-s~ 272 (370)
+..+||+.+||+.|.+. +.++|.|++...+++.+.+.++-...+...+- .+. +... ....++.+ +.
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 45789999999999865 99999999999999999998865543332221 110 0001 11123333 45
Q ss_pred CCCCCCcEEEEeCCCccc
Q 047655 273 LNRDPAKILYVSGHAFES 290 (370)
Q Consensus 273 LgRDls~VIiIDd~~~~~ 290 (370)
+|-++++||.|-|+..-.
T Consensus 260 lgi~~~qtIaVGDg~NDl 277 (322)
T PRK11133 260 YEIPLAQTVAIGDGANDL 277 (322)
T ss_pred cCCChhhEEEEECCHHHH
Confidence 677899999999987543
No 63
>PRK09449 dUMP phosphatase; Provisional
Probab=95.51 E-value=0.018 Score=52.66 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=65.8
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCC-CCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNR-DPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgR-Dls~VIi 282 (370)
+...||+.++|++|.+.|-+.|-|++...++..+++.+.-.++|...+..+.+.... ..+.+-++.+|- +.+++|+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 446899999999999889999999999999999999988888888888777654322 234456777874 5578999
Q ss_pred EeCCCc
Q 047655 283 VSGHAF 288 (370)
Q Consensus 283 IDd~~~ 288 (370)
|+|+..
T Consensus 174 vgD~~~ 179 (224)
T PRK09449 174 VGDNLH 179 (224)
T ss_pred EcCCcH
Confidence 999863
No 64
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=95.38 E-value=0.02 Score=51.59 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=64.4
Q ss_pred eeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~VIiI 283 (370)
...||+.++|++|.+. |.++|.|++...++..+++.+.-.++|...+..+..... ...+.+=+..+|-+++++|+|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 4679999999999986 999999999999999999988766678888776654321 122345556778899999999
Q ss_pred eCCCc
Q 047655 284 SGHAF 288 (370)
Q Consensus 284 Dd~~~ 288 (370)
+|++.
T Consensus 172 gD~~~ 176 (198)
T TIGR01428 172 ASNPW 176 (198)
T ss_pred eCCHH
Confidence 99874
No 65
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=95.19 E-value=0.06 Score=50.04 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiI 283 (370)
..=||+.+.|..|.+ -|.+.|.|+.....++.+++.++-..+|.....-+.+..... .+..-+..+|.+.+++|+|
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~V 168 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMV 168 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEE
Confidence 357999999999985 589999999999999999999988888877766333322222 2345567778886799999
Q ss_pred eCCCcccc
Q 047655 284 SGHAFESS 291 (370)
Q Consensus 284 Dd~~~~~~ 291 (370)
=|+..-..
T Consensus 169 GDs~~Di~ 176 (220)
T COG0546 169 GDSLNDIL 176 (220)
T ss_pred CCCHHHHH
Confidence 88766443
No 66
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.042 Score=51.62 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=61.1
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccc---cCCcc---------ccc-ccc
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKY---QDGKH---------YRD-LSK 272 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~---~~G~~---------iKD-Ls~ 272 (370)
+..+||..+.+..+.+. +.++|.|++...++++|.+.|.-+..+...+-.+.-.+ ..|.. ++. ++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 67899999999999976 99999999999999999999988777666665554111 11111 112 234
Q ss_pred CCCCCCcEEEEeCCCcc
Q 047655 273 LNRDPAKILYVSGHAFE 289 (370)
Q Consensus 273 LgRDls~VIiIDd~~~~ 289 (370)
+|-++++++-+-|+..-
T Consensus 156 ~g~~~~~~~a~gDs~nD 172 (212)
T COG0560 156 LGIPLEETVAYGDSAND 172 (212)
T ss_pred cCCCHHHeEEEcCchhh
Confidence 57788889988877543
No 67
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.08 E-value=0.036 Score=52.41 Aligned_cols=85 Identities=5% Similarity=-0.023 Sum_probs=69.3
Q ss_pred eeeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIi 282 (370)
+..-||+.++|++|. +-|.+.|-|++...+++.+++.++-.++|...+..+.+.... ..+.+=+..+|-+.+++|+
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~ 186 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFV 186 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEE
Confidence 456799999999996 459999999999999999999998888899888888664322 2345667788889999999
Q ss_pred EeCCCcccc
Q 047655 283 VSGHAFESS 291 (370)
Q Consensus 283 IDd~~~~~~ 291 (370)
|+|++.-..
T Consensus 187 vgDs~~Di~ 195 (248)
T PLN02770 187 FEDSVSGIK 195 (248)
T ss_pred EcCCHHHHH
Confidence 999876443
No 68
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.99 E-value=0.032 Score=53.48 Aligned_cols=83 Identities=10% Similarity=0.142 Sum_probs=61.6
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCc---------ccccCCccccccccCCCC-
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA---------TKYQDGKHYRDLSKLNRD- 276 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~---------c~~~~G~~iKDLs~LgRD- 276 (370)
++.=|-|..||-.|.+.+ -++||.+.+..|..++.+|.-..||....+-+- |+....-+-|=+...|-+
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~ 177 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDS 177 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCC
Confidence 456677999999998888 999999999999999999988777766654321 333233333444555665
Q ss_pred CCcEEEEeCCCccc
Q 047655 277 PAKILYVSGHAFES 290 (370)
Q Consensus 277 ls~VIiIDd~~~~~ 290 (370)
..|++++||+..+.
T Consensus 178 p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 178 PRNTYFFDDSERNI 191 (244)
T ss_pred cCceEEEcCchhhH
Confidence 99999999997753
No 69
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=94.96 E-value=0.039 Score=50.05 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=66.7
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~VIi 282 (370)
+...||+.++|++|.+ -+.++|.|++...++..+++.++-.++|...+..+.+... ...+.+=+..+|-+.+++|+
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ 153 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVM 153 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEE
Confidence 5678999999999975 5999999999999999999999888888887776654321 12233455677888999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|+..-.
T Consensus 154 igD~~~Di 161 (205)
T TIGR01454 154 VGDAVTDL 161 (205)
T ss_pred EcCCHHHH
Confidence 99987544
No 70
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=94.94 E-value=0.035 Score=49.10 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=63.9
Q ss_pred eEEEEeCCCceecccc-CCCCc---eeeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCc
Q 047655 184 FTLVLDLNETLLYSDW-KRDRG---WRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGA 258 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~-~~~~G---~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~ 258 (370)
+.++||+||||+-... -...| -.+..+|+. -|++|.+ .+.++|-|+.....+..+++.+.-..++...
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~----- 74 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ----- 74 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc-----
Confidence 4688999999995311 11111 123456665 5888875 6899999999999999999888765554321
Q ss_pred ccccCCccc-cccccCCCCCCcEEEEeCCCccc
Q 047655 259 TKYQDGKHY-RDLSKLNRDPAKILYVSGHAFES 290 (370)
Q Consensus 259 c~~~~G~~i-KDLs~LgRDls~VIiIDd~~~~~ 290 (370)
......+ +=+..+|-+.+++++|-|+..-.
T Consensus 75 --~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 75 --SNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred --cchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 1112222 23356677888999998776543
No 71
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=94.93 E-value=0.032 Score=50.73 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=61.3
Q ss_pred CceEEEEeCCCceeccc-cCC--CCceeeee-CccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEec
Q 047655 182 HVFTLVLDLNETLLYSD-WKR--DRGWRTFK-RPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSR 256 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~-~~~--~~G~~v~k-RPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~R 256 (370)
....+|+|+||||+... +.. ......+. |.+. =++.|. +-++++|-|......+..+++.+.-..++.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~--~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~----- 92 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGY--GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ----- 92 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchH--HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec-----
Confidence 57889999999999752 111 11122222 2221 123333 579999999999999999999986544432
Q ss_pred CcccccCCccccccccCCCCCCcEEEEeCCCcc
Q 047655 257 GATKYQDGKHYRDLSKLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 257 e~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~ 289 (370)
.+..+.....+=+..+|-+.+.|++|-|+..-
T Consensus 93 -g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D 124 (183)
T PRK09484 93 -GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLID 124 (183)
T ss_pred -CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHH
Confidence 11111111223345678888999999887653
No 72
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.91 E-value=0.084 Score=47.39 Aligned_cols=105 Identities=22% Similarity=0.340 Sum_probs=56.1
Q ss_pred eEEEEeCCCceeccccCC-----CCceeeeeCccHHHHHHHHHh-cccEEEeccCchh--------------cHHHHHhh
Q 047655 184 FTLVLDLNETLLYSDWKR-----DRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNM--------------YVDPVCER 243 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~-----~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~--------------YA~~Il~~ 243 (370)
+.+.+|||||||...... ...| ...-|++-+-|.++.+ -|.|||+|.+... ..+.+++.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~-~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~ 79 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDW-KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKE 79 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGG-EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHh-hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHH
Confidence 357899999999986422 1234 5567789999999985 6999999986322 22333444
Q ss_pred cCCCcceeEEEecCcccc-cCCcc---cccccc-CCCCCCcEEEEeCCCcc
Q 047655 244 LDTNHCIRYRLSRGATKY-QDGKH---YRDLSK-LNRDPAKILYVSGHAFE 289 (370)
Q Consensus 244 LDP~~~i~~rL~Re~c~~-~~G~~---iKDLs~-LgRDls~VIiIDd~~~~ 289 (370)
|+-.-.+-+....+.|+. ..|.+ .+++.. +.-|+++.++|=|.+..
T Consensus 80 l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 80 LGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp CTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred cCCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCC
Confidence 432211111122333432 23433 233332 22488899999887554
No 73
>PLN02954 phosphoserine phosphatase
Probab=94.72 E-value=0.035 Score=50.84 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=34.5
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCC
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
..+||+.++|+.|.+ .+.++|-|++...+++.+++.+.-
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi 123 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGI 123 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCC
Confidence 467999999999975 489999999999999999999753
No 74
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=94.60 E-value=0.051 Score=49.97 Aligned_cols=85 Identities=16% Similarity=0.044 Sum_probs=67.1
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC--C-ccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD--G-KHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~--G-~~iKDLs~LgRDls~VIi 282 (370)
....||+.++|+.|.+ -|.++|.|++....++.+++.+.-.++|...+..+...... + .+..=+..+|-+.+++++
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 3456999999999985 59999999999999999999988777888877776543221 1 334566778889999999
Q ss_pred EeCCCcccc
Q 047655 283 VSGHAFESS 291 (370)
Q Consensus 283 IDd~~~~~~ 291 (370)
|+|+..-..
T Consensus 171 igDs~~Di~ 179 (222)
T PRK10826 171 LEDSFNGMI 179 (222)
T ss_pred EcCChhhHH
Confidence 999886443
No 75
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=94.51 E-value=0.05 Score=47.91 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIi 282 (370)
+...||+.++|+.|.+. +.++|-|++ .+++.+++.+.-.++|..++..+.+..... .+.+=+..+|-+.+++|+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 56789999999999864 888888887 778999998877777888877665432211 233456677888999999
Q ss_pred EeCCCcc
Q 047655 283 VSGHAFE 289 (370)
Q Consensus 283 IDd~~~~ 289 (370)
|+|+..-
T Consensus 165 IgD~~~d 171 (185)
T TIGR02009 165 FEDALAG 171 (185)
T ss_pred EeCcHhh
Confidence 9998653
No 76
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.38 E-value=0.1 Score=49.13 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=49.9
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh-cccEEEeccCchhcHH--HHHhhcCCCc-ceeEEEecC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVD--PVCERLDTNH-CIRYRLSRG 257 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~--~Il~~LDP~~-~i~~rL~Re 257 (370)
-.++++|+||||.+. ...-||+.++|++|.+ -+.++|.|++.+...+ ..++.+.-.. .+...+...
T Consensus 8 ~~~~~~D~dG~l~~~---------~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 8 YDVFLLDLWGVIIDG---------NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG 77 (242)
T ss_pred CCEEEEecccccccC---------CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH
Confidence 447889999999864 2346999999999985 6899999998877766 6777776554 555555444
No 77
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=94.36 E-value=0.055 Score=47.98 Aligned_cols=81 Identities=7% Similarity=0.071 Sum_probs=64.0
Q ss_pred eCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEEeC
Q 047655 209 KRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYVSG 285 (370)
Q Consensus 209 kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiIDd 285 (370)
.-||+ +.|.+|.+.+.++|-|++...+++.+++.+.-.++|...+..+++..... .+..-+.++|-+.+++|+|+|
T Consensus 89 ~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igD 167 (188)
T PRK10725 89 PLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFED 167 (188)
T ss_pred CccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEec
Confidence 34775 78999987799999999999999999999987788998888887643222 234566778888999999999
Q ss_pred CCccc
Q 047655 286 HAFES 290 (370)
Q Consensus 286 ~~~~~ 290 (370)
++.-+
T Consensus 168 s~~di 172 (188)
T PRK10725 168 ADFGI 172 (188)
T ss_pred cHhhH
Confidence 86543
No 78
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=94.00 E-value=0.1 Score=47.06 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=59.6
Q ss_pred eeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC---ccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG---KHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G---~~iKDLs~LgRDls~VIiI 283 (370)
..-||+.++|.+|.+. |.++|.|++... +..+++.+.-.++|...+..+.+..... .+.+=++.+|-+.+++|+|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 4569999999999865 999999998765 4777887766667877776665443221 2345667788899999999
Q ss_pred eCCC
Q 047655 284 SGHA 287 (370)
Q Consensus 284 Dd~~ 287 (370)
+|+.
T Consensus 184 gD~~ 187 (203)
T TIGR02252 184 GDSL 187 (203)
T ss_pred CCCc
Confidence 9986
No 79
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=93.83 E-value=0.12 Score=46.03 Aligned_cols=82 Identities=13% Similarity=0.085 Sum_probs=57.2
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecC-ccccc-C--------C--cccc-cccc
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRG-ATKYQ-D--------G--KHYR-DLSK 272 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re-~c~~~-~--------G--~~iK-DLs~ 272 (370)
+..+||+.++|+.|.+ -+.++|.|++...+++++++.+....++...+.-+ ..... + + ..++ -+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~ 158 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRE 158 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHH
Confidence 4579999999999975 59999999999999999999987665554443322 11111 1 0 0111 1344
Q ss_pred CCCCCCcEEEEeCCCc
Q 047655 273 LNRDPAKILYVSGHAF 288 (370)
Q Consensus 273 LgRDls~VIiIDd~~~ 288 (370)
+|-+.+++|+|.|+..
T Consensus 159 ~~~~~~~~i~iGDs~~ 174 (201)
T TIGR01491 159 LNPSLTETVAVGDSKN 174 (201)
T ss_pred hCCCHHHEEEEcCCHh
Confidence 6778899999999864
No 80
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=93.45 E-value=0.17 Score=42.08 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=38.2
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhc
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~L 244 (370)
+++||||||.+.. . .=||+.+||++|.+. ..+++.|.+.....+.++++|
T Consensus 1 ~l~D~dGvl~~g~-------~--~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYNGN-------E--PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEETT-------E--E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEeCC-------C--cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 5899999999731 2 349999999999975 999999998877666666666
No 81
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=93.20 E-value=0.15 Score=47.87 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=64.7
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcce-eEEEecCcccccC---CccccccccCCC-CCCcE
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCI-RYRLSRGATKYQD---GKHYRDLSKLNR-DPAKI 280 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i-~~rL~Re~c~~~~---G~~iKDLs~LgR-Dls~V 280 (370)
+...||+.++|++|.+. +.+.|-|++...+++.+++.+.-.++| ...+..+...... ..+.+-+..+|- +.+++
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAAC 177 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchhe
Confidence 45679999999999764 999999999999999999998777764 7777766543211 134566677886 48999
Q ss_pred EEEeCCCccc
Q 047655 281 LYVSGHAFES 290 (370)
Q Consensus 281 IiIDd~~~~~ 290 (370)
|+|.|++.-.
T Consensus 178 l~IGDs~~Di 187 (253)
T TIGR01422 178 VKVGDTVPDI 187 (253)
T ss_pred EEECCcHHHH
Confidence 9999997644
No 82
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=92.96 E-value=0.19 Score=46.33 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=64.3
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGAT 259 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c 259 (370)
.+...+|+|||+|||- |+...+ =|-+.+.+..+... --++|.|...+.-+..++..||-..+... -
T Consensus 26 ~Gikgvi~DlDNTLv~--wd~~~~-----tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A------~ 92 (175)
T COG2179 26 HGIKGVILDLDNTLVP--WDNPDA-----TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA------K 92 (175)
T ss_pred cCCcEEEEeccCceec--ccCCCC-----CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecc------c
Confidence 5788999999999996 443333 47788888889876 88999999999999999999885532110 0
Q ss_pred cccCCccccccccCCCCCCcEEEEeCC
Q 047655 260 KYQDGKHYRDLSKLNRDPAKILYVSGH 286 (370)
Q Consensus 260 ~~~~G~~iKDLs~LgRDls~VIiIDd~ 286 (370)
+...-.+-|-|...|-+.++|++|=|.
T Consensus 93 KP~~~~fr~Al~~m~l~~~~vvmVGDq 119 (175)
T COG2179 93 KPFGRAFRRALKEMNLPPEEVVMVGDQ 119 (175)
T ss_pred CccHHHHHHHHHHcCCChhHEEEEcch
Confidence 000112234555666677777777664
No 83
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.89 E-value=0.2 Score=45.45 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=68.6
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIiI 283 (370)
+..-|++.++|+.+...|.++|.|.+...++...+..+.-..+|...+..+.+.... -.+-.=+..+|-+.+++++|
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~V 177 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFV 177 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEE
Confidence 566799999999999889999999999999999999987556788888877665322 22345677888889999999
Q ss_pred eCCCccc
Q 047655 284 SGHAFES 290 (370)
Q Consensus 284 Dd~~~~~ 290 (370)
||+..+-
T Consensus 178 gD~~~~d 184 (229)
T COG1011 178 GDSLEND 184 (229)
T ss_pred CCChhhh
Confidence 9987754
No 84
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.88 E-value=0.2 Score=47.90 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=45.4
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
.+.+++||||||+.+.. ...|...+.|+.|.+. +.++|-|.-....+..+++.++-.
T Consensus 4 ~kli~~DlDGTLl~~~~--------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT--------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCC--------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 46889999999997521 2346788899999875 889998888888899999988643
No 85
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=92.73 E-value=0.18 Score=45.57 Aligned_cols=80 Identities=5% Similarity=-0.069 Sum_probs=62.8
Q ss_pred eCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCccccc--CCccccccccCCCCCCcEEEEeC
Q 047655 209 KRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQ--DGKHYRDLSKLNRDPAKILYVSG 285 (370)
Q Consensus 209 kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~--~G~~iKDLs~LgRDls~VIiIDd 285 (370)
..|+..++|+.|.+. +.++|-|++...+++.+++.+.-.++|...+..+....+ ...+.+-+..+|-+.+++|+|.|
T Consensus 107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD 186 (197)
T TIGR01548 107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGD 186 (197)
T ss_pred cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeC
Confidence 456779999999864 999999999999999999999877788888777654322 11234556677888999999999
Q ss_pred CCc
Q 047655 286 HAF 288 (370)
Q Consensus 286 ~~~ 288 (370)
++.
T Consensus 187 ~~~ 189 (197)
T TIGR01548 187 TVD 189 (197)
T ss_pred CHH
Confidence 863
No 86
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=92.58 E-value=0.086 Score=47.88 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=56.6
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhc--HHHHHhhcCCCcceeEEEecCccccc---CCccccccccCCCCCCcE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMY--VDPVCERLDTNHCIRYRLSRGATKYQ---DGKHYRDLSKLNRDPAKI 280 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~Y--A~~Il~~LDP~~~i~~rL~Re~c~~~---~G~~iKDLs~LgRDls~V 280 (370)
+...||+.++|+.|.+ -|.++|.|++.... ....+..++-..+|.+.+..+.+... ...+.+-++.+|-+.+++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 5668999999999986 59999999986554 22222223333457776655444321 223445667888899999
Q ss_pred EEEeCCCccc
Q 047655 281 LYVSGHAFES 290 (370)
Q Consensus 281 IiIDd~~~~~ 290 (370)
|+|||+....
T Consensus 173 l~i~D~~~di 182 (211)
T TIGR02247 173 VFLDDLGSNL 182 (211)
T ss_pred EEEcCCHHHH
Confidence 9999986643
No 87
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.94 E-value=0.12 Score=47.23 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=61.0
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCccee-EEEecCcccc---cCCccccccccCCCCCCcEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIR-YRLSRGATKY---QDGKHYRDLSKLNRDPAKILY 282 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~-~rL~Re~c~~---~~G~~iKDLs~LgRDls~VIi 282 (370)
...-||+.++|+.|. +.++|.|++...+++.+++.++-..+|. ..+..++... ....+..=+.++|-+.+++|+
T Consensus 87 ~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~ 164 (221)
T PRK10563 87 LEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCIL 164 (221)
T ss_pred CCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 445699999999994 8999999999999999998887766674 4555543321 112334556678888999999
Q ss_pred EeCCCccc
Q 047655 283 VSGHAFES 290 (370)
Q Consensus 283 IDd~~~~~ 290 (370)
|+|++.-.
T Consensus 165 igDs~~di 172 (221)
T PRK10563 165 VDDSSAGA 172 (221)
T ss_pred EeCcHhhH
Confidence 99987643
No 88
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=91.91 E-value=0.34 Score=45.71 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=49.3
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHH-HhcccEEEeccCchhcHHHHHhhcCCCc
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHM-AKFYEIVVYSDQLNMYVDPVCERLDTNH 248 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~L-s~~YEIVIfTs~~~~YA~~Il~~LDP~~ 248 (370)
.+.+++||||||+.+..+ ..|...+-|+++ .+-..++|-|..+-..+.++++.|...+
T Consensus 3 ~kli~~DlDGTLl~~~~~--------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT--------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eeEEEEcCCCCccCCCCc--------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 578999999999987532 788889999987 5779999999988899999999998775
No 89
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=91.73 E-value=0.26 Score=44.38 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=41.4
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcC
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
|++||||||+++.. . .-|...+.|+.+. +-..++|-|.-....+.++++.+.
T Consensus 1 i~~DlDGTLl~~~~------~--i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG------K--ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp EEEECCTTTCSTTS------S--SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred cEEEECCceecCCC------e--eCHHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 68999999998532 1 4477888888887 668888888888888888888765
No 90
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.23 E-value=0.44 Score=46.06 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=68.9
Q ss_pred CceEEEEeCCCceeccccCC-CCce-----------------------------------eeeeCccHHHHHHHHHh-cc
Q 047655 182 HVFTLVLDLNETLLYSDWKR-DRGW-----------------------------------RTFKRPGVDAFLEHMAK-FY 224 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~-~~G~-----------------------------------~v~kRPgld~FL~~Ls~-~Y 224 (370)
....||+|+|+||+-+...- ..+| ....=|.+..|++.|.+ ..
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 46788999999999775111 1111 12345677888888884 58
Q ss_pred cEEEeccCchhcHHHHHhhcCCCcc-eeEEE-----------ecCcc----cccCCcc-----------ccccccCCCCC
Q 047655 225 EIVVYSDQLNMYVDPVCERLDTNHC-IRYRL-----------SRGAT----KYQDGKH-----------YRDLSKLNRDP 277 (370)
Q Consensus 225 EIVIfTs~~~~YA~~Il~~LDP~~~-i~~rL-----------~Re~c----~~~~G~~-----------iKDLs~LgRDl 277 (370)
-|+..|+....+...-++.|--.|+ |.-.. +-..+ .+.+|.. ..=|.++|..+
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~p 178 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQSP 178 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCCC
Confidence 9999999999998888887633322 22111 11111 1233321 23356779999
Q ss_pred CcEEEEeCCCcc
Q 047655 278 AKILYVSGHAFE 289 (370)
Q Consensus 278 s~VIiIDd~~~~ 289 (370)
++||+|||+...
T Consensus 179 k~IIfIDD~~~n 190 (252)
T PF11019_consen 179 KKIIFIDDNKEN 190 (252)
T ss_pred CeEEEEeCCHHH
Confidence 999999998763
No 91
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=91.08 E-value=0.48 Score=45.06 Aligned_cols=84 Identities=11% Similarity=-0.036 Sum_probs=63.1
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcc-eeEEEecCcccccC---CccccccccCCCC-CCcE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHC-IRYRLSRGATKYQD---GKHYRDLSKLNRD-PAKI 280 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~-i~~rL~Re~c~~~~---G~~iKDLs~LgRD-ls~V 280 (370)
+..-||+.++|++|.+ -|.+.|-|+.....++.+++.+.-.++ +.+.+..+++.... ..+.+=+..+|-+ .+.+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~ 179 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAAC 179 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcce
Confidence 4457999999999975 599999999999999999998765565 46677666543221 2345667778864 6899
Q ss_pred EEEeCCCccc
Q 047655 281 LYVSGHAFES 290 (370)
Q Consensus 281 IiIDd~~~~~ 290 (370)
|+|+|++.-.
T Consensus 180 l~IGDs~~Di 189 (267)
T PRK13478 180 VKVDDTVPGI 189 (267)
T ss_pred EEEcCcHHHH
Confidence 9999988643
No 92
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.75 E-value=0.46 Score=45.40 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+.+..+++||||||++... . .-|-..+-|++|.+. ..+||-|.-....+.++++.|+..
T Consensus 5 ~~~~lI~~DlDGTLL~~~~------~--i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT------Y--DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCeEEEEeCccCCcCCCC------c--CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 5678999999999998532 1 123344557777754 788888888888888899988643
No 93
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=90.64 E-value=0.53 Score=43.07 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=44.1
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNH 248 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~ 248 (370)
+.+++||||||+... + ..-|...+-|+.|.+. +.++|-|.-....+.++++.|+..+
T Consensus 2 k~v~~DlDGTLl~~~-----~---~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 2 KLVAIDIDGTLTEPN-----R---MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred cEEEEecCCCcCCCC-----c---ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 478999999999642 1 2556777778888765 8888888888888889998887664
No 94
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=90.63 E-value=0.41 Score=43.20 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=42.6
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD 245 (370)
.|++|+||||+.... ...-|.+.+-|+.|.+. ..++|-|......+..++..++
T Consensus 1 li~~D~DgTL~~~~~-------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA-------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCC-------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 378999999997421 12457888889999876 7888888888889999988754
No 95
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=90.52 E-value=0.29 Score=47.70 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcc---eeEEEecCcccccC---CccccccccCCCCCCc
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHC---IRYRLSRGATKYQD---GKHYRDLSKLNRDPAK 279 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~---i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~ 279 (370)
+...||+.+||++|.+ -|.++|-|++...+...+++.+.-.++ +... ..+.+.... ..+.+=+..+|-+.++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 4678999999999986 599999999999999999987632222 3332 444332211 1234556778888999
Q ss_pred EEEEeCCCcccc
Q 047655 280 ILYVSGHAFESS 291 (370)
Q Consensus 280 VIiIDd~~~~~~ 291 (370)
+|+|+|+..-+.
T Consensus 222 ~l~IGDs~~Di~ 233 (286)
T PLN02779 222 CVVVEDSVIGLQ 233 (286)
T ss_pred EEEEeCCHHhHH
Confidence 999999876443
No 96
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=90.30 E-value=0.66 Score=44.75 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=43.5
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh--cccEEEeccCchhcHHHHHhhcC
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK--FYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~--~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
.+...|++|+||||+....++... ..-|.+.+-|+.|.+ -..++|-|.-+..-+..++..++
T Consensus 12 ~~~~li~~D~DGTLl~~~~~p~~~---~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 12 SANYAWFFDLDGTLAEIKPHPDQV---VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred CCCEEEEEecCCCCCCCCCCcccc---cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 347899999999999864433332 234777777888886 36777888777777777766554
No 97
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=90.27 E-value=0.47 Score=43.49 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=41.3
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCC
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
+++||||||+.+.. . .-|-..+.|..|.+. ..++|-|.-+...+.++++.|.-
T Consensus 2 i~~DlDGTLL~~~~-------~-~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 2 VFSDLDGTLLDSHS-------Y-DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred EEEeCCCCCcCCCC-------C-CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 78999999997542 1 122256888888765 79999999999999999998863
No 98
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=90.10 E-value=0.46 Score=41.74 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred eeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccc---cCCccccccccCCCCCCcEEEE
Q 047655 208 FKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKY---QDGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~---~~G~~iKDLs~LgRDls~VIiI 283 (370)
...||+.++|++|.+ .+.+.|-|++. .+..+++.+.-.++|.+.+..+.-.. ....+.+-+..+|-+.+++|+|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 457999999999975 48888888753 46678888876677877765543211 1112345666778889999999
Q ss_pred eCCCcc
Q 047655 284 SGHAFE 289 (370)
Q Consensus 284 Dd~~~~ 289 (370)
+|++.-
T Consensus 165 gD~~~d 170 (185)
T TIGR01990 165 EDAQAG 170 (185)
T ss_pred ecCHHH
Confidence 998653
No 99
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=89.94 E-value=0.84 Score=45.04 Aligned_cols=84 Identities=11% Similarity=0.262 Sum_probs=56.5
Q ss_pred eeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC---CC-cceeEEEec-Ccccc--cCCccc----c-----
Q 047655 206 RTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD---TN-HCIRYRLSR-GATKY--QDGKHY----R----- 268 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD---P~-~~i~~rL~R-e~c~~--~~G~~i----K----- 268 (370)
.+..|||+.+||++|.+. ..++|+|++...+++.+++.+. ++ ..+..+|-- +.... ..|..+ |
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 478899999999999755 9999999999999999999753 33 234433332 22111 112111 1
Q ss_pred --ccccCC--CCCCcEEEEeCCCcc
Q 047655 269 --DLSKLN--RDPAKILYVSGHAFE 289 (370)
Q Consensus 269 --DLs~Lg--RDls~VIiIDd~~~~ 289 (370)
..+.++ .+.++||+|-|+..-
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~D 223 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGD 223 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhh
Confidence 223345 678899999987663
No 100
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=89.92 E-value=0.52 Score=44.33 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=40.7
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCC
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
+++||||||++... .-|...++|+.|.+. ..+++-|.-+...+..+++.|.-
T Consensus 2 i~~DlDGTLl~~~~---------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 2 IFTDLDGTLLPPGY---------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EEEeCCCCCcCCCC---------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 68999999998321 135688999999875 88888888877778888888764
No 101
>PTZ00445 p36-lilke protein; Provisional
Probab=89.88 E-value=0.51 Score=45.14 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCceEEEEeCCCceeccccCCCCceee----------eeCccHHHHHHHHHh-cccEEEeccCchhc-----------HH
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRT----------FKRPGVDAFLEHMAK-FYEIVVYSDQLNMY-----------VD 238 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v----------~kRPgld~FL~~Ls~-~YEIVIfTs~~~~Y-----------A~ 238 (370)
.+-..+++|||.|||-... .||.- ..||.+..++..|.+ .+.|+|-|=+.+.. ++
T Consensus 41 ~GIk~Va~D~DnTlI~~Hs---gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~ 117 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHS---GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGD 117 (219)
T ss_pred cCCeEEEecchhhhhhhhc---ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechH
Confidence 4678999999999986211 34433 369999999999985 68888888877644 33
Q ss_pred HHHhh-cCCCcc---eeE------EEecCccccc--------CCc--c--ccccccCCCCCCcEEEEeCCCcccc
Q 047655 239 PVCER-LDTNHC---IRY------RLSRGATKYQ--------DGK--H--YRDLSKLNRDPAKILYVSGHAFESS 291 (370)
Q Consensus 239 ~Il~~-LDP~~~---i~~------rL~Re~c~~~--------~G~--~--iKDLs~LgRDls~VIiIDd~~~~~~ 291 (370)
++++. |+-.+| |.. +++.+.-.|. .+. | -+=++..|-+++.+|+|||++.++.
T Consensus 118 ~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVe 192 (219)
T PTZ00445 118 RMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCK 192 (219)
T ss_pred HHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHH
Confidence 34443 221222 111 1223322221 111 1 1233456889999999999977553
No 102
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=89.47 E-value=0.85 Score=41.85 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=44.3
Q ss_pred CCCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcc-c--EEEeccCc-------hhcHHHHHhhcC
Q 047655 180 EQHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFY-E--IVVYSDQL-------NMYVDPVCERLD 245 (370)
Q Consensus 180 ~~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~Y-E--IVIfTs~~-------~~YA~~Il~~LD 245 (370)
..+-..||+|+|+||+... ....-|-+.+.+++|.+.| + |+|+|.+. ..-|+.+-+.|.
T Consensus 38 ~~Gik~li~DkDNTL~~~~-------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY-------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred hcCceEEEEcCCCCCCCCC-------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhC
Confidence 4567899999999998643 2445678888999999776 3 89999974 455666666665
No 103
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.25 E-value=0.15 Score=44.66 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=59.1
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIiI 283 (370)
+...||+.++|+. +.|.|++...+...+++.+.-.++|...++.+...... ..+.+=+.++|-+.+++|+|
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 4578999999993 78999999999999999987667777777666533221 13456677889899999999
Q ss_pred eCCCc
Q 047655 284 SGHAF 288 (370)
Q Consensus 284 Dd~~~ 288 (370)
+|++.
T Consensus 163 gD~~~ 167 (175)
T TIGR01493 163 AAHQW 167 (175)
T ss_pred ecChh
Confidence 99854
No 104
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=89.23 E-value=0.59 Score=48.39 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=60.7
Q ss_pred eeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccc--cCCccccccccCCCCCCcEEEEe
Q 047655 208 FKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKY--QDGKHYRDLSKLNRDPAKILYVS 284 (370)
Q Consensus 208 ~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~--~~G~~iKDLs~LgRDls~VIiID 284 (370)
...||+.++|++|. +.+.+.|.|++...++..+++.++-..+|...+..+.... +...+.+-+..+ +++++|+|.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~v~VG 407 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKY--DIKEAAVVG 407 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhc--CcceEEEEe
Confidence 35799999999997 4599999999999999999999887778888777665421 111223334444 357899999
Q ss_pred CCCccc
Q 047655 285 GHAFES 290 (370)
Q Consensus 285 d~~~~~ 290 (370)
|++.-.
T Consensus 408 Ds~~Di 413 (459)
T PRK06698 408 DRLSDI 413 (459)
T ss_pred CCHHHH
Confidence 987644
No 105
>PLN02645 phosphoglycolate phosphatase
Probab=89.19 E-value=0.57 Score=46.09 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=42.4
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
-.++++|+||||++.. .++ ||..++|+.|.+ -..+++-|.........++++|.
T Consensus 28 ~~~~~~D~DGtl~~~~-------~~~--~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~ 82 (311)
T PLN02645 28 VETFIFDCDGVIWKGD-------KLI--EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFE 82 (311)
T ss_pred CCEEEEeCcCCeEeCC-------ccC--cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3588999999998742 233 999999999974 69999999988777777776553
No 106
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=88.97 E-value=1.1 Score=42.26 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=41.6
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
.+.+++||||||++... ..-|...+-|+.+.+. ..++|=|.-....+.++++.|...
T Consensus 3 ~kli~~DlDGTLl~~~~--------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred eEEEEEecCCcCcCCCC--------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 46789999999998632 1334556778888766 777777777777788888888643
No 107
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=88.90 E-value=1.3 Score=42.73 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=39.6
Q ss_pred eeeCccHHHHHHHHHh---cccEEEeccCchhcHHHHHhhcCCCcceeEEEe
Q 047655 207 TFKRPGVDAFLEHMAK---FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLS 255 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~---~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~ 255 (370)
+-.-||..+|++.+++ -+|++|-|.+...|.+.|++.-.-.++|...+.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEe
Confidence 4578999999999954 799999999999999999998665554544433
No 108
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=88.57 E-value=0.66 Score=45.92 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=39.1
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh-----cccEEEeccCc----hhcHHHHHhhc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK-----FYEIVVYSDQL----NMYVDPVCERL 244 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~-----~YEIVIfTs~~----~~YA~~Il~~L 244 (370)
+.+++|+||||+++.. + =||..+||+.|.. -..++++|... ..+++.+.+.+
T Consensus 1 ~~~ifD~DGvL~~g~~-------~--i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK-------P--IAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL 61 (321)
T ss_pred CEEEEeCcCceECCcc-------c--cHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc
Confidence 4689999999998631 2 6899999999997 78899999765 34555554443
No 109
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=88.38 E-value=1.2 Score=41.32 Aligned_cols=106 Identities=19% Similarity=0.132 Sum_probs=67.1
Q ss_pred CceEEEEeCCCceeccccCCCCc-eeeeeCccHHHHHHHHHh-cccEEEeccCc----hhcHH--------HHHhhcCCC
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRG-WRTFKRPGVDAFLEHMAK-FYEIVVYSDQL----NMYVD--------PVCERLDTN 247 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G-~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~----~~YA~--------~Il~~LDP~ 247 (370)
..++|+||.||||+--.-+.-+. --+..-||+-+=|..+.+ -|-+||+|... ..|.. .+.+.|--.
T Consensus 4 ~~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~ 83 (181)
T COG0241 4 DQKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ 83 (181)
T ss_pred CCcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence 37899999999998542211111 024678999999999964 59999999843 22322 244444444
Q ss_pred c-ceeEEEecCc-----ccc---cCCccccccccCCCCCCcEEEEeCCC
Q 047655 248 H-CIRYRLSRGA-----TKY---QDGKHYRDLSKLNRDPAKILYVSGHA 287 (370)
Q Consensus 248 ~-~i~~rL~Re~-----c~~---~~G~~iKDLs~LgRDls~VIiIDd~~ 287 (370)
+ .|..+|+-.| |.. ..|.+..=+...+-|+++.++|=|+.
T Consensus 84 gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~ 132 (181)
T COG0241 84 GVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRL 132 (181)
T ss_pred CCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcH
Confidence 4 3666666443 332 23444445556678999999998774
No 110
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=88.35 E-value=0.88 Score=42.70 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=42.5
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
.+++||||||+.... ..-|...+.|+.+.+. ..++|=|......+.++++.+...
T Consensus 1 li~~DlDGTLl~~~~--------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH--------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCCCCCC--------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 378999999997521 2446677788888865 889999988888888888888655
No 111
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=88.32 E-value=0.78 Score=41.03 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=38.7
Q ss_pred EEEeCCCceeccccCC----CCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHH---HHHhhc
Q 047655 186 LVLDLNETLLYSDWKR----DRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVD---PVCERL 244 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~----~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~---~Il~~L 244 (370)
+++|+||||+.+.... -.| .-...|++.+++..+.+. |.|++-|+.....+. +.++.+
T Consensus 2 VisDIDGTL~~sd~~~~~~~~~~-~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~ 67 (157)
T smart00775 2 VISDIDGTITKSDVLGHVVPIIG-KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQI 67 (157)
T ss_pred EEEecCCCCcccccccccccccc-cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHh
Confidence 7899999999876211 011 013479999999999864 666666666555553 566664
No 112
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=88.18 E-value=0.82 Score=43.16 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCC
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
.+++||||||++... . .-+...++++.+.+. ..++|-|.-....+..+++.++.
T Consensus 1 li~~DlDGTll~~~~------~--~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG------Y--DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred CEEEcCCCCCcCCCC------c--CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 378999999998642 1 123478899999876 78888888888888888888863
No 113
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.15 E-value=0.86 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=39.4
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~L 244 (370)
.++++||||||++.... ++ ..=||..++|+.|.+. ..+++-|.....-.+.+.+.|
T Consensus 2 k~i~~D~DGtl~~~~~~---~~--~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 2 KGVLLDISGVLYISDAK---SG--VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CEEEEeCCCeEEeCCCc---cc--CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 47899999999976320 00 1357999999999965 889999976655444444444
No 114
>PRK10444 UMP phosphatase; Provisional
Probab=87.86 E-value=0.98 Score=43.28 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=43.6
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcC
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
.++++||||||++.. ..=||..+||+.|.+ -..+++-|.....-...++++|.
T Consensus 2 ~~v~~DlDGtL~~~~---------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~ 55 (248)
T PRK10444 2 KNVICDIDGVLMHDN---------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFA 55 (248)
T ss_pred cEEEEeCCCceEeCC---------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999863 235899999999986 58899999988888888888774
No 115
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=87.51 E-value=0.85 Score=43.18 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=58.3
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcC---CCcceeEEEecCcccc-cCCccccccccCCCCCCcEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLD---TNHCIRYRLSRGATKY-QDGKHYRDLSKLNRDPAKIL 281 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LD---P~~~i~~rL~Re~c~~-~~G~~iKDLs~LgRDls~VI 281 (370)
....||+.++|++|.+ -+.++|+|++.......+++..+ -.++|...+....|.. ....+.+=+..+|-+.++++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~l 173 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREIL 173 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEE
Confidence 4578999999999975 69999999999988888887753 2234444332111211 11234556677888999999
Q ss_pred EEeCCCcc
Q 047655 282 YVSGHAFE 289 (370)
Q Consensus 282 iIDd~~~~ 289 (370)
+|+|+...
T Consensus 174 fVgDs~~D 181 (220)
T TIGR01691 174 FLSDIINE 181 (220)
T ss_pred EEeCCHHH
Confidence 99998753
No 116
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=87.35 E-value=1.2 Score=40.49 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=63.9
Q ss_pred CceEEEEeCCCceeccc--cCCCCc-e-eeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecC
Q 047655 182 HVFTLVLDLNETLLYSD--WKRDRG-W-RTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRG 257 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~--~~~~~G-~-~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re 257 (370)
.-.++|+|.||||.--. +....+ + .+-.|-|.--.+-+ .+.+.+.|-|+....++..+++.+.-..++...
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~-~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~---- 80 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQ-LCGIDVAIITSKKSGAVRHRAEELKIKRFHEGI---- 80 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHH-HCCCEEEEEECCCcHHHHHHHHHCCCcEEEecC----
Confidence 46789999999998653 222222 2 23455554422211 356999999999999999999999766555421
Q ss_pred cccccCCccccccccCCCCCCcEEEEeCCCcc
Q 047655 258 ATKYQDGKHYRDLSKLNRDPAKILYVSGHAFE 289 (370)
Q Consensus 258 ~c~~~~G~~iKDLs~LgRDls~VIiIDd~~~~ 289 (370)
..+...+..=+..+|-+.+++++|-|+..-
T Consensus 81 --kpkp~~~~~~~~~l~~~~~ev~~iGD~~nD 110 (169)
T TIGR02726 81 --KKKTEPYAQMLEEMNISDAEVCYVGDDLVD 110 (169)
T ss_pred --CCCHHHHHHHHHHcCcCHHHEEEECCCHHH
Confidence 111011122334567778899999987643
No 117
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=87.12 E-value=1.5 Score=40.35 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=37.0
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+..|||+.+||+.|.+. +.++|.|++...+++++++.+.+.
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~ 110 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK 110 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc
Confidence 67899999999999874 999999999999999999998543
No 118
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=86.55 E-value=1.6 Score=39.97 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=40.6
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNH 248 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~ 248 (370)
+.+++||||||+.+.. ..-|...+-|..+.+. ..++|=|.-....+.++++.|....
T Consensus 4 kli~~DlDGTLl~~~~--------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 4 KAIAIDIDGTITDKDR--------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred eEEEEecCCCcCCCCC--------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 5789999999996432 2445666777777754 5777777777777788888886543
No 119
>PLN02811 hydrolase
Probab=86.32 E-value=1 Score=41.48 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHH-HHhhcCCCcceeEEEecC--cccc---cCCccccccccCC---CC
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDP-VCERLDTNHCIRYRLSRG--ATKY---QDGKHYRDLSKLN---RD 276 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~-Il~~LDP~~~i~~rL~Re--~c~~---~~G~~iKDLs~Lg---RD 276 (370)
+...||+.++|+.|.+ -|.+.|-|++...+... +.+...-..+|.+.++.+ .+.. ....+.+=+..+| -+
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 4457999999999986 59999999987765543 332222234677777777 4432 1223444455554 77
Q ss_pred CCcEEEEeCCCccc
Q 047655 277 PAKILYVSGHAFES 290 (370)
Q Consensus 277 ls~VIiIDd~~~~~ 290 (370)
.+++|+|+|+..-.
T Consensus 157 ~~~~v~IgDs~~di 170 (220)
T PLN02811 157 PGKVLVFEDAPSGV 170 (220)
T ss_pred ccceEEEeccHhhH
Confidence 89999999987643
No 120
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=86.02 E-value=1.9 Score=40.46 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=39.3
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
.+.+++||||||+.... ..-|...+-|..+.+. ..++|=|.-....+.++++.|...
T Consensus 3 ~kli~~DlDGTLl~~~~--------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccEEEEeCCCceECCCC--------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 35889999999997532 1334455667777654 677777766666677788887654
No 121
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=85.95 E-value=2.2 Score=37.16 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=38.7
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYR 253 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~r 253 (370)
+..+||+.++|+++.+ -+.++|.|++...+++++++.+.-..++...
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~ 119 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANR 119 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeee
Confidence 4468999999999975 4899999999999999999998655544433
No 122
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=85.95 E-value=1.1 Score=43.39 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCCceEEEEeCCCceeccccCC--------------------CCce--------------------------eeeeCccH
Q 047655 180 EQHVFTLVLDLNETLLYSDWKR--------------------DRGW--------------------------RTFKRPGV 213 (370)
Q Consensus 180 ~~~k~TLVLDLDeTLVhs~~~~--------------------~~G~--------------------------~v~kRPgl 213 (370)
..++..||+|.|.|+|.-+.+. +.+| .+-.=||.
T Consensus 10 ~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgm 89 (256)
T KOG3120|consen 10 SSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGM 89 (256)
T ss_pred cCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccH
Confidence 3578999999999999865331 1112 12356898
Q ss_pred HHHHHHHHh--cccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCC
Q 047655 214 DAFLEHMAK--FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDG 264 (370)
Q Consensus 214 d~FL~~Ls~--~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G 264 (370)
-..++.+++ .||++|-|.+...+.+.++++.+-..+|...+.-.+|....|
T Consensus 90 v~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G 142 (256)
T KOG3120|consen 90 VRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASG 142 (256)
T ss_pred HHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCC
Confidence 888888874 489999999999999999998875555554444444443333
No 123
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.52 E-value=1.5 Score=50.62 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=65.3
Q ss_pred eCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCC-cceeEEEecCcccccC---CccccccccCCCCCCcEEEE
Q 047655 209 KRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTN-HCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 209 kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~-~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIiI 283 (370)
.-||+.+||++|.+ -|.++|.|++...+++.+++.+.-. .+|...+..+.+.... ..+.+-++.+|-+.+++|+|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~I 241 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVI 241 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEE
Confidence 46999999999975 5999999999999999999998754 5688888777665322 23456677889899999999
Q ss_pred eCCCcc
Q 047655 284 SGHAFE 289 (370)
Q Consensus 284 Dd~~~~ 289 (370)
+|++.-
T Consensus 242 gDs~~D 247 (1057)
T PLN02919 242 EDALAG 247 (1057)
T ss_pred cCCHHH
Confidence 998653
No 124
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=85.40 E-value=1.7 Score=41.87 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=37.2
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~L 244 (370)
.++++||||||++.. . .=||..++|++|.+ ...+++-|+........++++|
T Consensus 3 ~~~~~D~DGtl~~~~-------~--~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l 55 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE-------R--VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF 55 (279)
T ss_pred cEEEEeCCCceEcCC-------e--eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 468899999998742 1 34889999999986 4788889886544444444444
No 125
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=85.21 E-value=1.7 Score=39.54 Aligned_cols=52 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD 245 (370)
+++||||||+.+.. ..-|-..+-|+++.+. ..+++=|.-+...+.++++.|.
T Consensus 1 i~~DlDGTLl~~~~--------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 1 IASDIDGTLTDPNR--------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred CeEeccCccCCCCc--------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 58999999997532 1334455667777655 6777777777777777888776
No 126
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=84.37 E-value=2.1 Score=40.63 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=38.7
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCc
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNH 248 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~ 248 (370)
+.+++||||||+.+.. ..-|...+-|+.+.+. ..++|=|.-+...+.++++.++...
T Consensus 3 kli~~DlDGTLl~~~~--------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred cEEEEeCCCcCcCCCC--------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 5789999999997532 1334455667777655 5666666666667777888876543
No 127
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.48 E-value=1.6 Score=46.40 Aligned_cols=123 Identities=19% Similarity=0.245 Sum_probs=67.4
Q ss_pred CCceEEEEeCCCceeccccCCC--Cceeee---eCcc---HHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCccee
Q 047655 181 QHVFTLVLDLNETLLYSDWKRD--RGWRTF---KRPG---VDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIR 251 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~--~G~~v~---kRPg---ld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~ 251 (370)
..+++||||||+||.-...... .|.++- -=+- +++|...+.+ -+=+.|-|.....-|..+..+ -|+
T Consensus 220 ~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~k-hp~---- 294 (574)
T COG3882 220 KSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRK-HPD---- 294 (574)
T ss_pred cccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhh-CCC----
Confidence 5689999999999986543221 222111 0111 3444444442 344556676666666665543 111
Q ss_pred EEEecCc-----cccc-CCc-cccccccCCCCCCcEEEEeCCCccccCCCCcc-ccCCCCCCCCC
Q 047655 252 YRLSRGA-----TKYQ-DGK-HYRDLSKLNRDPAKILYVSGHAFESSLQPENC-VPIKPYKLEPD 308 (370)
Q Consensus 252 ~rL~Re~-----c~~~-~G~-~iKDLs~LgRDls~VIiIDd~~~~~~~qpeN~-I~I~~w~gd~~ 308 (370)
..|--++ |... .+. .-|=-++||-.++..|+|||+|...-.-..++ |.+.+|-.|+.
T Consensus 295 MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~~Dps 359 (574)
T COG3882 295 MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFPEDPS 359 (574)
T ss_pred eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCCCCHH
Confidence 1111121 1111 122 23555678999999999999998654433332 66777766543
No 128
>PRK10976 putative hydrolase; Provisional
Probab=82.14 E-value=3.1 Score=39.18 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=37.1
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+.+++||||||+.+... .-|...+=|+.+.+. ..++|=|.-....+.++++.|+..
T Consensus 3 kli~~DlDGTLl~~~~~--------is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHT--------LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCc--------CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 57899999999976321 233345556666654 666666666666667777777654
No 129
>PLN02423 phosphomannomutase
Probab=81.94 E-value=3.6 Score=39.13 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
+..+++||||||+.+.. ..-|...+-|+.|.+...++|-|.-+. ..+.+.+.+
T Consensus 7 ~~i~~~D~DGTLl~~~~--------~i~~~~~~ai~~l~~~i~fviaTGR~~---~~~~~~~~~ 59 (245)
T PLN02423 7 GVIALFDVDGTLTAPRK--------EATPEMLEFMKELRKVVTVGVVGGSDL---SKISEQLGK 59 (245)
T ss_pred ceEEEEeccCCCcCCCC--------cCCHHHHHHHHHHHhCCEEEEECCcCH---HHHHHHhcc
Confidence 45666999999997642 123666777888888755555555422 344444444
No 130
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=81.65 E-value=1.9 Score=40.60 Aligned_cols=58 Identities=21% Similarity=0.131 Sum_probs=35.5
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccC-chhcHHHHHhhcC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQ-LNMYVDPVCERLD 245 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~-~~~YA~~Il~~LD 245 (370)
++.++.||||||+.+.- . .....|.+.+-++.+.+.--.+|+.|+ +..-+..+++.+.
T Consensus 1 ~~li~tDlDGTLl~~~~-~----~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~ 59 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTD-G----DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKP 59 (249)
T ss_pred CeEEEEcCCCcCcCCCC-C----ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCC
Confidence 46789999999996421 1 122347777777777766645555554 4445556655444
No 131
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=81.05 E-value=4.4 Score=39.77 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=36.1
Q ss_pred CCceEEEEeCCCceeccccCC------C-----Ccee-------eeeCccHHHHHHHHHhcccEEEeccC
Q 047655 181 QHVFTLVLDLNETLLYSDWKR------D-----RGWR-------TFKRPGVDAFLEHMAKFYEIVVYSDQ 232 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~------~-----~G~~-------v~kRPgld~FL~~Ls~~YEIVIfTs~ 232 (370)
.+++.+|||||||++...--. . .+|. -..=||.-+||+++-++=-.|.|-|.
T Consensus 77 ~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSN 146 (274)
T COG2503 77 GKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISN 146 (274)
T ss_pred CCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEec
Confidence 356699999999999764211 1 1231 24569999999999888766666664
No 132
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=80.37 E-value=3.6 Score=36.86 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=40.4
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCCcceeEEE
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTNHCIRYRL 254 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL 254 (370)
...+||+.++|+.+.+ -+.++|-|++...+++++++.+.-.++|...+
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l 134 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRL 134 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecce
Confidence 3579999999999976 58999999999999999999987766655533
No 133
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.21 E-value=3.7 Score=41.13 Aligned_cols=56 Identities=16% Similarity=0.330 Sum_probs=38.7
Q ss_pred eEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 184 FTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+.+++||||||+.+.. ++. +-..+-|+.|.+. ..||+-|+-+..-+..+++.|.-.
T Consensus 2 KLIftDLDGTLLd~~~------~~~--~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF------NSY--GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred cEEEEeCCCCCcCCCC------cCC--HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 5788999999997532 121 2355667778755 777777777776677777777643
No 134
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=80.06 E-value=4.2 Score=39.99 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhccc--EEEeccCchhcHHHHHh
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYE--IVVYSDQLNMYVDPVCE 242 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YE--IVIfTs~~~~YA~~Il~ 242 (370)
.++.+++||.||||++....+. -...=+++-.-|..|+..+. ++|.|--...-.+..+.
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p~---~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHPE---AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred ccceEEEEeccccccccccCcc---ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 5789999999999998765443 34556788999999999999 77777777777777766
No 135
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=79.75 E-value=1.8 Score=40.58 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=52.4
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccC---CccccccccCCCCCCcEEEE
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQD---GKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~---G~~iKDLs~LgRDls~VIiI 283 (370)
+..-||+.++|+.|.+.|.++|-|++... ++.+.-.++|.+.+.-+...... ..+.+=+..+|-+.+++|+|
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 44559999999999988999999997654 24443345677766554332111 12334566788899999999
Q ss_pred eCCC
Q 047655 284 SGHA 287 (370)
Q Consensus 284 Dd~~ 287 (370)
-|++
T Consensus 187 GD~~ 190 (238)
T PRK10748 187 GDDL 190 (238)
T ss_pred cCCc
Confidence 8874
No 136
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=79.28 E-value=7 Score=43.31 Aligned_cols=59 Identities=19% Similarity=0.059 Sum_probs=42.5
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCC
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+.++.++.||||||++... ++.. -..+-|+.|.+. ..++|-|.-....+..+++.|+..
T Consensus 414 ~~~KLIfsDLDGTLLd~d~------~i~~--~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT------YSYS--TALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred ceeeEEEEECcCCCcCCCC------ccCH--HHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 6678999999999998643 1222 234456666654 788888888888888898888643
No 137
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=79.27 E-value=3.9 Score=38.93 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=34.1
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhh
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCER 243 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~ 243 (370)
++++||||||++.. .. =|+..++|+.|.+. ..+++-|.......+.+.+.
T Consensus 3 ~~~~D~DGtl~~~~-------~~--i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~ 53 (249)
T TIGR01457 3 GYLIDLDGTMYKGK-------ER--IPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEM 53 (249)
T ss_pred EEEEeCCCceEcCC-------ee--CcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHH
Confidence 68999999999752 22 26899999999865 77788885333333333333
No 138
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=78.78 E-value=3.1 Score=39.21 Aligned_cols=48 Identities=15% Similarity=0.314 Sum_probs=35.1
Q ss_pred EEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCc----hhcHHHHHh
Q 047655 186 LVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQL----NMYVDPVCE 242 (370)
Q Consensus 186 LVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~----~~YA~~Il~ 242 (370)
+++|+||||+.... . =|+..++|..+... +.+++-|.+. ..+++.+.+
T Consensus 1 ~lfD~DGvL~~~~~-------~--~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~ 53 (236)
T TIGR01460 1 FLFDIDGVLWLGHK-------P--IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSS 53 (236)
T ss_pred CEEeCcCccCcCCc-------c--CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999998632 2 35899999999865 8899998554 445555555
No 139
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=76.62 E-value=3 Score=39.36 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=34.0
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEE-eccCc
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVV-YSDQL 233 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVI-fTs~~ 233 (370)
++..|+||+||||+-...++. ....=|++.+-|+.|++...++| .-|+.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~---~~~~~~~~~~~L~~L~~~~~~~v~ivSGR 51 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPD---AAVVSDRLLTILQKLAARPHNAIWIISGR 51 (244)
T ss_pred CcEEEEEecCccccCCcCCCc---ccCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 567899999999996433332 13445889999999998876542 34443
No 140
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=75.88 E-value=5.1 Score=38.58 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=51.6
Q ss_pred CCceEEEEeCCCceeccccCC----CC-------c---e----eeeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHH
Q 047655 181 QHVFTLVLDLNETLLYSDWKR----DR-------G---W----RTFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVC 241 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~----~~-------G---~----~v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il 241 (370)
.++..+|||+|||++....-. .. . | .--.-|++-+|++++.+ -++|++-|.-....-+..+
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~ 154 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATL 154 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 478899999999999754100 00 0 1 12457899999999864 6888888887776655566
Q ss_pred hhcCCCcc--eeEEEecC
Q 047655 242 ERLDTNHC--IRYRLSRG 257 (370)
Q Consensus 242 ~~LDP~~~--i~~rL~Re 257 (370)
+.|.-.|+ ..+.+.|+
T Consensus 155 ~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 155 DNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHHHHcCCCCcCeeeecC
Confidence 66644443 35556664
No 141
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=75.74 E-value=5.2 Score=39.38 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=40.8
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD 245 (370)
--+..+||||||++.. ..=||..+||+.|.+. =.+++-|.++....+.+.++|.
T Consensus 8 y~~~l~DlDGvl~~G~---------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~ 62 (269)
T COG0647 8 YDGFLFDLDGVLYRGN---------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLS 62 (269)
T ss_pred cCEEEEcCcCceEeCC---------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3468899999999642 2238999999999977 7888888877766665655554
No 142
>PLN03017 trehalose-phosphatase
Probab=75.36 E-value=4.6 Score=41.48 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=42.7
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHh
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCE 242 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~ 242 (370)
++..|+||+||||+--.-++. ....=|.+.+-|+.|.+.+.++|-|--...-+..+++
T Consensus 110 k~~llflD~DGTL~Piv~~p~---~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 110 KQIVMFLDYDGTLSPIVDDPD---KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred CCeEEEEecCCcCcCCcCCcc---cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhhc
Confidence 578999999999993221111 1245577888899999999999999887777777643
No 143
>PTZ00174 phosphomannomutase; Provisional
Probab=75.14 E-value=5.5 Score=37.67 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=27.7
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCc
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQL 233 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~ 233 (370)
..+.+++||||||+++... .-|...+-|..+.+. ..++|=|.-+
T Consensus 4 ~~klia~DlDGTLL~~~~~--------is~~~~~ai~~l~~~Gi~~viaTGR~ 48 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRNP--------ITQEMKDTLAKLKSKGFKIGVVGGSD 48 (247)
T ss_pred CCeEEEEECcCCCcCCCCC--------CCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568899999999987531 234455556667655 4455544433
No 144
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.64 E-value=2.8 Score=39.83 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCceEEEEeCCCceeccccC------------CC-------CceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHH
Q 047655 181 QHVFTLVLDLNETLLYSDWK------------RD-------RGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPV 240 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~------------~~-------~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~I 240 (370)
.+++.+||||||||+....- +. .|.. .-=||.-+|++++.+. ++|++-|.-....-+.-
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~-~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T 148 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKA-PAIPGALELYNYARSRGVKVFFITGRPESQREAT 148 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGG-EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccC-cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence 47899999999998854211 00 1222 4558888999999866 88888888666666666
Q ss_pred HhhcCCCc
Q 047655 241 CERLDTNH 248 (370)
Q Consensus 241 l~~LDP~~ 248 (370)
++.|.-.|
T Consensus 149 ~~nL~~~G 156 (229)
T PF03767_consen 149 EKNLKKAG 156 (229)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 66665444
No 145
>PLN02151 trehalose-phosphatase
Probab=73.84 E-value=5.6 Score=40.69 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHh
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCE 242 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~ 242 (370)
++..|+||+||||+--..++. ....-|.+.+-|+.|++.+.++|-|--...-++.++.
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~---~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPD---RAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred CceEEEEecCccCCCCCCCcc---cccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHcC
Confidence 578999999999994332222 3556789999999999999999998877777776664
No 146
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=73.38 E-value=6.7 Score=42.01 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=66.1
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccc
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKY 261 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~ 261 (370)
.-.++++.|++++.. -+.....|||+.++|++|.+. ++++|-|.....+++.+++.+.-+ ++. .+..
T Consensus 385 ~~~~~~~~~~~~~g~-----~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~------~~~-~~~p 452 (562)
T TIGR01511 385 STSVLVAVNGELAGV-----FALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN------VRA-EVLP 452 (562)
T ss_pred CEEEEEEECCEEEEE-----EEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc------EEc-cCCh
Confidence 344566777776643 123456899999999999864 999999999999999999998543 111 1111
Q ss_pred c-CCccccccccCCCCCCcEEEEeCCCccccC--CCCccccCC
Q 047655 262 Q-DGKHYRDLSKLNRDPAKILYVSGHAFESSL--QPENCVPIK 301 (370)
Q Consensus 262 ~-~G~~iKDLs~LgRDls~VIiIDd~~~~~~~--qpeN~I~I~ 301 (370)
. ....++.|. .+.++|++|-|...-... +-+-+|.+.
T Consensus 453 ~~K~~~v~~l~---~~~~~v~~VGDg~nD~~al~~A~vgia~g 492 (562)
T TIGR01511 453 DDKAALIKELQ---EKGRVVAMVGDGINDAPALAQADVGIAIG 492 (562)
T ss_pred HHHHHHHHHHH---HcCCEEEEEeCCCccHHHHhhCCEEEEeC
Confidence 1 112234433 355789999876554332 334344443
No 147
>PLN02887 hydrolase family protein
Probab=73.33 E-value=8.9 Score=41.62 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=40.0
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCC
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDT 246 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP 246 (370)
+.+.+++||||||+.+.. ..-|...+-|+.+.+. ..++|=|.-....+..+++.|+.
T Consensus 307 ~iKLIa~DLDGTLLn~d~--------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS--------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDL 364 (580)
T ss_pred CccEEEEeCCCCCCCCCC--------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCc
Confidence 346899999999997642 1234445567777654 77777777777777788888764
No 148
>PLN02580 trehalose-phosphatase
Probab=70.37 E-value=7.9 Score=40.03 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=47.4
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHh
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCE 242 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~ 242 (370)
.++..|+||.||||+--.-++. .+..=|++.+-|+.|++.+-++|-|--...-++.++.
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~Pd---~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDPD---RALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred cCCeEEEEecCCccCCCCCCcc---cccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhC
Confidence 3678999999999985443332 3566789999999999999999999988877777765
No 149
>PRK11590 hypothetical protein; Provisional
Probab=68.89 E-value=2.8 Score=38.58 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=33.4
Q ss_pred eeCccHHHHH-HHHH-hcccEEEeccCchhcHHHHHhhcC
Q 047655 208 FKRPGVDAFL-EHMA-KFYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 208 ~kRPgld~FL-~~Ls-~~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
..+||+.+.| +++. +-+.++|-|++...++++++..+.
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 3489999999 6787 589999999999999999999866
No 150
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=68.02 E-value=2.8 Score=37.83 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.4
Q ss_pred EEEEeCCCceeccc
Q 047655 185 TLVLDLNETLLYSD 198 (370)
Q Consensus 185 TLVLDLDeTLVhs~ 198 (370)
.+++|||||||.+.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 57999999999885
No 151
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=67.98 E-value=3.1 Score=36.73 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.9
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
...+++|+||||+.+.
T Consensus 5 ~~~viFD~DGTLiDs~ 20 (188)
T PRK10725 5 YAGLIFDMDGTILDTE 20 (188)
T ss_pred ceEEEEcCCCcCccCH
Confidence 4678999999999985
No 152
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=67.31 E-value=3 Score=36.97 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=12.2
Q ss_pred EEEEeCCCceeccc
Q 047655 185 TLVLDLNETLLYSD 198 (370)
Q Consensus 185 TLVLDLDeTLVhs~ 198 (370)
++++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999874
No 153
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=66.42 E-value=3.4 Score=37.44 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.6
Q ss_pred eEEEEeCCCceecccc
Q 047655 184 FTLVLDLNETLLYSDW 199 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~ 199 (370)
.++++||||||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999999753
No 154
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=65.12 E-value=10 Score=36.10 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=28.8
Q ss_pred CceEEEEeCCCcee-ccccCCCCceeeeeCccHHHHHH-HHHhcccEEEeccCchhcHHHHHhhc
Q 047655 182 HVFTLVLDLNETLL-YSDWKRDRGWRTFKRPGVDAFLE-HMAKFYEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 182 ~k~TLVLDLDeTLV-hs~~~~~~G~~v~kRPgld~FL~-~Ls~~YEIVIfTs~~~~YA~~Il~~L 244 (370)
++..||-||||||+ .. -.-+.-+.++|+ ......-+++-|.-.-.-+..++...
T Consensus 1 ~~~ll~sDlD~Tl~~~~---------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~ 56 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGD---------DEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREY 56 (247)
T ss_dssp -SEEEEEETBTTTBHCH---------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHC
T ss_pred CCEEEEEECCCCCcCCC---------HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhC
Confidence 46889999999999 11 011233444444 22233444555555555666666654
No 155
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=63.28 E-value=8.1 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=21.1
Q ss_pred eeCccHHHHHHHHHhc-ccEEEeccCchh
Q 047655 208 FKRPGVDAFLEHMAKF-YEIVVYSDQLNM 235 (370)
Q Consensus 208 ~kRPgld~FL~~Ls~~-YEIVIfTs~~~~ 235 (370)
..=||+.+.|+.|.+. |++++.|+....
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4568999999999988 588888887654
No 156
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=63.00 E-value=3.8 Score=35.91 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
.++++|+||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 468999999999985
No 157
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=62.63 E-value=12 Score=41.18 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=44.7
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh--cccEEEeccCchhcHHHHHhhc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK--FYEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~--~YEIVIfTs~~~~YA~~Il~~L 244 (370)
.++..+++|+||||+-....+.. ...-|.+.+-|+.|.+ ...|+|-|.-.....+.++..+
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~---~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPEL---AVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDL 552 (726)
T ss_pred ccceEEEEecCccccCCCCCccc---CCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 45679999999999965332221 2345688888999987 6788888888877777776554
No 158
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=62.45 E-value=14 Score=33.73 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=39.6
Q ss_pred EEEeCCCceeccccC----CCCceeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhh
Q 047655 186 LVLDLNETLLYSDWK----RDRGWRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCER 243 (370)
Q Consensus 186 LVLDLDeTLVhs~~~----~~~G~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~ 243 (370)
+|-|+||||.-|+.. +-.|- -+.+||+.++...+.+. |.|+=-|+-.-..+...-+.
T Consensus 2 VvsDIDGTiT~SD~~G~i~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~ 63 (157)
T PF08235_consen 2 VVSDIDGTITKSDVLGHILPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSW 63 (157)
T ss_pred EEEeccCCcCccchhhhhhhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHH
Confidence 678999999998641 11232 27899999999999976 77776676554444444333
No 159
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=62.29 E-value=4.5 Score=36.31 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=12.9
Q ss_pred EEEEeCCCceecccc
Q 047655 185 TLVLDLNETLLYSDW 199 (370)
Q Consensus 185 TLVLDLDeTLVhs~~ 199 (370)
.+++||||||+.+..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 689999999998753
No 160
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=62.24 E-value=22 Score=33.86 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=36.7
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCC
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTN 247 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~ 247 (370)
+..|||..+|.+.+.+ --.++|-|+++..|..++++.|--+
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 7889999999999985 4789999999999999999988644
No 161
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=59.15 E-value=4.1 Score=34.39 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.1
Q ss_pred EEEeCCCceecccc
Q 047655 186 LVLDLNETLLYSDW 199 (370)
Q Consensus 186 LVLDLDeTLVhs~~ 199 (370)
+++|+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998754
No 162
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=58.72 E-value=5.6 Score=37.79 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=13.8
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
-.++++|||||||.+.
T Consensus 4 ~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 4 IQAVIFDWAGTTVDFG 19 (267)
T ss_pred eEEEEEcCCCCeecCC
Confidence 3589999999999974
No 163
>PRK09449 dUMP phosphatase; Provisional
Probab=58.66 E-value=4.8 Score=36.71 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.7
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
.++++||||||++..
T Consensus 4 k~iiFDlDGTLid~~ 18 (224)
T PRK09449 4 DWILFDADETLFHFD 18 (224)
T ss_pred cEEEEcCCCchhcch
Confidence 578999999999743
No 164
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=58.60 E-value=4.3 Score=35.54 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=12.3
Q ss_pred EEEEeCCCceeccc
Q 047655 185 TLVLDLNETLLYSD 198 (370)
Q Consensus 185 TLVLDLDeTLVhs~ 198 (370)
.+++|+||||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999986
No 165
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=58.36 E-value=4.8 Score=37.99 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.0
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
-..+++||||||+.+.
T Consensus 22 ~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 22 LEAVLFDVDGTLCDSD 37 (248)
T ss_pred cCEEEEcCCCccCcCH
Confidence 4579999999999986
No 166
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=57.11 E-value=6.7 Score=36.74 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
.++++|+|||||.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 578999999999974
No 167
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=56.69 E-value=10 Score=35.93 Aligned_cols=101 Identities=12% Similarity=0.240 Sum_probs=58.4
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHH------HHhcccEEEeccCchhcHHHHHhhcCCCc-ceeEE
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEH------MAKFYEIVVYSDQLNMYVDPVCERLDTNH-CIRYR 253 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~------Ls~~YEIVIfTs~~~~YA~~Il~~LDP~~-~i~~r 253 (370)
+++.++-+|+|+|++.++.-.-+| .-+.-||-+.||+. +..-.+= -|-++++|..+++.=-..| .|-+.
T Consensus 61 ~~Pi~VsFDIDDTvLFsSp~F~~G-k~~~sPgs~DyLknq~FW~~vn~g~D~---~SIPKevA~qLI~MHq~RGD~i~Fv 136 (237)
T COG3700 61 RPPIAVSFDIDDTVLFSSPGFWRG-KKYFSPGSEDYLKNQVFWEKVNNGWDE---FSIPKEVARQLIDMHQRRGDAIYFV 136 (237)
T ss_pred CCCeeEeeccCCeeEecccccccC-ccccCCChHHhhcCHHHHHHHhcCCcc---ccchHHHHHHHHHHHHhcCCeEEEE
Confidence 568899999999999987554455 35667998888753 3221110 1236788888877544444 24444
Q ss_pred EecCccccc--CCccccccccCCCCCCcEEEEeCCC
Q 047655 254 LSRGATKYQ--DGKHYRDLSKLNRDPAKILYVSGHA 287 (370)
Q Consensus 254 L~Re~c~~~--~G~~iKDLs~LgRDls~VIiIDd~~ 287 (370)
--|...... ....-||... ..+.-|++.-|.+
T Consensus 137 TGRt~gk~d~vsk~Lak~F~i--~~m~pv~f~Gdk~ 170 (237)
T COG3700 137 TGRTPGKTDTVSKTLAKNFHI--TNMNPVIFAGDKP 170 (237)
T ss_pred ecCCCCcccccchhHHhhccc--CCCcceeeccCCC
Confidence 445444221 0111233322 3455577777776
No 168
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=56.23 E-value=7 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
.++++||||||+.+.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 479999999999874
No 169
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=56.13 E-value=5.3 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.6
Q ss_pred EEEEeCCCceecccc
Q 047655 185 TLVLDLNETLLYSDW 199 (370)
Q Consensus 185 TLVLDLDeTLVhs~~ 199 (370)
.+++|||||||.+..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999853
No 170
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=55.90 E-value=5.7 Score=35.57 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
..+++|+||||+.+.
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 368999999999875
No 171
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=55.90 E-value=5.9 Score=37.13 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.5
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
-..+++||||||+.+.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 3579999999999874
No 172
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=55.57 E-value=7 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.3
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
..++|+|+||||+...
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 4579999999999853
No 173
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=55.56 E-value=26 Score=34.79 Aligned_cols=76 Identities=11% Similarity=0.042 Sum_probs=49.2
Q ss_pred CceEEEEeCCCceecccc-CCC----------Ccee--------eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHH
Q 047655 182 HVFTLVLDLNETLLYSDW-KRD----------RGWR--------TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVC 241 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~-~~~----------~G~~--------v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il 241 (370)
++-.+|||+|||++.... -.. ..|. ..-=||.-+|++++.+ -+.|++.|.-.+..-+.-+
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 468999999999993210 000 1122 1224788899999964 5888888887766666666
Q ss_pred hhcCCCcc--eeEEEecC
Q 047655 242 ERLDTNHC--IRYRLSRG 257 (370)
Q Consensus 242 ~~LDP~~~--i~~rL~Re 257 (370)
+-|--.|+ ..+.+.|+
T Consensus 180 ~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 180 ANLKKAGYHTWEKLILKD 197 (275)
T ss_pred HHHHHcCCCCcceeeecC
Confidence 66655565 34556664
No 174
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=55.13 E-value=6.3 Score=35.54 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.4
Q ss_pred eEEEEeCCCceecccc
Q 047655 184 FTLVLDLNETLLYSDW 199 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~~ 199 (370)
..+++|+||||+.+..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 4689999999998753
No 175
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=54.06 E-value=5.1 Score=36.15 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=11.6
Q ss_pred EEEeCCCceeccc
Q 047655 186 LVLDLNETLLYSD 198 (370)
Q Consensus 186 LVLDLDeTLVhs~ 198 (370)
+|+||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999985
No 176
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=53.86 E-value=6.1 Score=34.50 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=11.7
Q ss_pred EEEeCCCceeccc
Q 047655 186 LVLDLNETLLYSD 198 (370)
Q Consensus 186 LVLDLDeTLVhs~ 198 (370)
+++|||||||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 6899999999875
No 177
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=53.51 E-value=7 Score=35.81 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=14.3
Q ss_pred CceEEEEeCCCceeccc
Q 047655 182 HVFTLVLDLNETLLYSD 198 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~ 198 (370)
....+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 35688999999999874
No 178
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=52.65 E-value=7.7 Score=37.78 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=14.3
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
-.++|+||||||+.+.
T Consensus 40 ~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 40 PEALLFDCDGVLVETE 55 (286)
T ss_pred CcEEEEeCceeEEccc
Confidence 4689999999999986
No 179
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=51.01 E-value=25 Score=39.62 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=46.3
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhc--ccEEEeccCchhcHHHHHhhc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKF--YEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~--YEIVIfTs~~~~YA~~Il~~L 244 (370)
.++..|+||.||||+....++.....+..-|++-+-|..|+.. -.|+|-|.-.....+.++.-+
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~ 570 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEY 570 (797)
T ss_pred ccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCC
Confidence 3567889999999996433222223355678899999999865 678888887777777777543
No 180
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=49.95 E-value=23 Score=37.76 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=53.8
Q ss_pred eeeeCccHHHHHHHHHh-c-ccEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCCccccccccCCCCCCcEEEE
Q 047655 206 RTFKRPGVDAFLEHMAK-F-YEIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~-~-YEIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiI 283 (370)
....|||+.+.|++|.+ - +.++|-|.....++..+++.+.-..++....- ......++.+ .....+|++|
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~p-----~~K~~~v~~l---~~~~~~v~~v 453 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELLP-----EDKLAIVKEL---QEEGGVVAMV 453 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCCH-----HHHHHHHHHH---HHcCCEEEEE
Confidence 35689999999999976 4 89999999999999999999987654432110 0011223333 3345689999
Q ss_pred eCCCcc
Q 047655 284 SGHAFE 289 (370)
Q Consensus 284 Dd~~~~ 289 (370)
-|...-
T Consensus 454 GDg~nD 459 (556)
T TIGR01525 454 GDGIND 459 (556)
T ss_pred ECChhH
Confidence 887653
No 181
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=48.99 E-value=17 Score=40.04 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhcceee
Q 047655 78 FLTYGIVATLTGVTAGAGY 96 (370)
Q Consensus 78 ~~~~~~~~~~~g~~~~~~y 96 (370)
.+.++++..++.++|++||
T Consensus 324 ~~~~~~~l~~~~~~g~~~~ 342 (656)
T PRK06975 324 AALWFVVVVLACAAAVGGY 342 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666667
No 182
>PRK11590 hypothetical protein; Provisional
Probab=48.55 E-value=36 Score=31.29 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=12.5
Q ss_pred CceEEEEeCCCceeccc
Q 047655 182 HVFTLVLDLNETLLYSD 198 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~ 198 (370)
.+.++++||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 35578888888888654
No 183
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=48.51 E-value=13 Score=33.01 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=54.6
Q ss_pred eeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcCCCcc-eeEEEecCcccccCCccccccccCCCCCCcEEEE
Q 047655 206 RTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLDTNHC-IRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LDP~~~-i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiI 283 (370)
.-..||++.++|+.|.+. +.++|.|......+..+.+.+.-... +....+ ++...-.+.+=+..|+.+.+.|++|
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~---~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVI---GKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE---TTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccccccccccc---ccccchhHHHHHHHHhcCCCEEEEE
Confidence 456899999999999987 89999999999999999999876431 111111 1211111123334466677799999
Q ss_pred eCCC
Q 047655 284 SGHA 287 (370)
Q Consensus 284 Dd~~ 287 (370)
=|..
T Consensus 202 GDg~ 205 (215)
T PF00702_consen 202 GDGV 205 (215)
T ss_dssp ESSG
T ss_pred ccCH
Confidence 8764
No 184
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=47.56 E-value=10 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.6
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
...+++|+||||+-+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 4578999999999864
No 185
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=47.49 E-value=37 Score=31.62 Aligned_cols=36 Identities=17% Similarity=0.037 Sum_probs=32.5
Q ss_pred eeCccHHHHHH-HHH-hcccEEEeccCchhcHHHHHhh
Q 047655 208 FKRPGVDAFLE-HMA-KFYEIVVYSDQLNMYVDPVCER 243 (370)
Q Consensus 208 ~kRPgld~FL~-~Ls-~~YEIVIfTs~~~~YA~~Il~~ 243 (370)
..+||+.+.|+ ++. +-+.|+|-|++...|++++++.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 45899999995 888 5899999999999999999977
No 186
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=43.62 E-value=0.54 Score=48.14 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=68.4
Q ss_pred EEecCcccccCCccccccc-cCCCCCCcEEEEeCCCccccCCCCccccCCCCCCCCCChHHhhhHHHHHHHHhCCCCc--
Q 047655 253 RLSRGATKYQDGKHYRDLS-KLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPAD-- 329 (370)
Q Consensus 253 rL~Re~c~~~~G~~iKDLs-~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd~~D~eLl~LipfLe~La~~~v~D-- 329 (370)
.++++.-....|..++|++ .+.+.+.++.-++++...+..+|.+...+++|.+.+.+.....|+.-|+.+.-+..-+
T Consensus 129 y~~g~~~~de~G~i~ddfs~~l~~~~~R~~~~~~~~~~~~~EP~~~~LLPdpl~pPy~Qp~yTLVleledvLVhpdws~~ 208 (393)
T KOG2832|consen 129 YLTGEPSRDEKGKIIDDFSNYLVQYLRRVWKIFNSYERMFKEPDRAKLLPDPLPPPYEQPPYTLVLELEDVLVHPDWSYK 208 (393)
T ss_pred EEecCCccccCCCcchhHHHHHHHHHHHHHHHHHhHHHHhcCCchhhhCCCCCCCcccCCCceEEEEeeeeEeccchhhh
Confidence 3455555566777788998 7788899999999999999999999999999999999888888888777766543344
Q ss_pred ------HHHHHHhhcC
Q 047655 330 ------IRAVLASYEK 339 (370)
Q Consensus 330 ------VR~vL~sy~~ 339 (370)
.||.++.|.+
T Consensus 209 tGwRf~kRPgvD~FL~ 224 (393)
T KOG2832|consen 209 TGWRFKKRPGVDYFLG 224 (393)
T ss_pred cCceeccCchHHHHHH
Confidence 6777776654
No 187
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=42.84 E-value=11 Score=39.04 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.3
Q ss_pred ceEEEEeCCCceecccc
Q 047655 183 VFTLVLDLNETLLYSDW 199 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~ 199 (370)
-.++++||||||+.+..
T Consensus 241 ~k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 241 LQALIFDMDGTLFQTDK 257 (459)
T ss_pred hhheeEccCCceecchh
Confidence 35799999999999863
No 188
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=42.44 E-value=65 Score=31.63 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred CceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHH-hcccEEEeccCchhcHHHHHhhcCCCc
Q 047655 182 HVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQLNMYVDPVCERLDTNH 248 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~YA~~Il~~LDP~~ 248 (370)
-+..+.+|||+|||-.....+ |-.. -+..|. .-|+||.-||-+..-...+-+.|+-.+
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~--------pA~p-v~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQ--------PAAP-VLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred cceEEEEcccCcccCCCCCCC--------ccch-HHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC
Confidence 356778899999998433222 1111 234444 569999999877665556667777554
No 189
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=42.35 E-value=71 Score=28.27 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=18.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHH
Q 047655 337 YEKKDIAKEFLERSKDYQRRMQEQR 361 (370)
Q Consensus 337 y~~~di~~ef~~r~~~~~~~~~~~~ 361 (370)
|.+.++|.+|.+|+++.-+++++.+
T Consensus 58 ~~~~e~p~e~~~kr~~Vl~~l~~l~ 82 (133)
T PF09440_consen 58 YPDDEVPAELAEKREEVLAELKELE 82 (133)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3566799999999887766666544
No 190
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=41.83 E-value=48 Score=28.88 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=36.2
Q ss_pred ccHHHHHHHH-HhcccEEEeccCchhcHHHHHhhcCCCc--ceeEEE
Q 047655 211 PGVDAFLEHM-AKFYEIVVYSDQLNMYVDPVCERLDTNH--CIRYRL 254 (370)
Q Consensus 211 Pgld~FL~~L-s~~YEIVIfTs~~~~YA~~Il~~LDP~~--~i~~rL 254 (370)
|++.+||+.+ .+.++|+|-|++...+++++++.+.-.. ++...+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 7777999998 5789999999999999999999776443 455555
No 191
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=40.53 E-value=12 Score=34.74 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=28.1
Q ss_pred EEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccCchhcHHHHHhhcC
Q 047655 185 TLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 185 TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
.++.||||||++.... + -| +..-++...+--.++|=|.-+..-+..++..++
T Consensus 1 li~~DlDgTLl~~~~~------~--~~-~~~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~ 52 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG------L--AS-FVELLRGSGDAVGFGIATGRSVESAKSRYAKLN 52 (236)
T ss_pred CeEEeccccccCCHHH------H--HH-HHHHHHhcCCCceEEEEeCCCHHHHHHHHHhCC
Confidence 3788999999984311 1 11 112233222233455555556666666666664
No 192
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=40.49 E-value=42 Score=35.70 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=54.6
Q ss_pred eeeeCccHHHHHHHHHhc-c-cEEEeccCchhcHHHHHhhcCCCcceeEEEecCcccccCCccccccccCCCCCCcEEEE
Q 047655 206 RTFKRPGVDAFLEHMAKF-Y-EIVVYSDQLNMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYV 283 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~~-Y-EIVIfTs~~~~YA~~Il~~LDP~~~i~~rL~Re~c~~~~G~~iKDLs~LgRDls~VIiI 283 (370)
....|||+.+.|++|.+. + .++|-|+....+++.+++.+.-.+++.... . +++ .+-+..+....++|++|
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~------p-~~K-~~~i~~l~~~~~~v~~v 431 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELL------P-EDK-LEIVKELREKYGPVAMV 431 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccC------c-HHH-HHHHHHHHhcCCEEEEE
Confidence 346899999999999864 7 999999999999999999987665432111 1 111 22333445566889999
Q ss_pred eCCCcc
Q 047655 284 SGHAFE 289 (370)
Q Consensus 284 Dd~~~~ 289 (370)
-|...-
T Consensus 432 GDg~nD 437 (536)
T TIGR01512 432 GDGIND 437 (536)
T ss_pred eCCHHH
Confidence 887553
No 193
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.27 E-value=17 Score=32.80 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=14.8
Q ss_pred CceEEEEeCCCceecccc
Q 047655 182 HVFTLVLDLNETLLYSDW 199 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs~~ 199 (370)
...++++|+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 356889999999999754
No 194
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=39.40 E-value=21 Score=37.01 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=16.3
Q ss_pred CCCcHHHHHHhhcCCChH--HHHHHHHHHH
Q 047655 326 SPADIRAVLASYEKKDIA--KEFLERSKDY 353 (370)
Q Consensus 326 ~v~DVR~vL~sy~~~di~--~ef~~r~~~~ 353 (370)
+..-+...|+.|-+.+-+ ..|.+...++
T Consensus 305 sL~~A~~wl~~YFD~~~~~t~~~l~~L~~L 334 (390)
T PRK10920 305 SLENVSTWVRAYFDTDDATTKAFLDEVDQL 334 (390)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345566677777665544 5566655433
No 195
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=38.95 E-value=39 Score=32.35 Aligned_cols=84 Identities=11% Similarity=0.180 Sum_probs=62.1
Q ss_pred eeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC-CCcceeEEEecCcccccCC-----ccccccccCCCCC-C
Q 047655 207 TFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD-TNHCIRYRLSRGATKYQDG-----KHYRDLSKLNRDP-A 278 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD-P~~~i~~rL~Re~c~~~~G-----~~iKDLs~LgRDl-s 278 (370)
...=||+..++.+|..+ --+.++|++...+++-.+..+. .-..|.+...-+.=....| .|.+=.+.+|-+. +
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~ 170 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPS 170 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCcc
Confidence 34557999999999864 7888999999999988888775 4455666554332222333 3567788889888 9
Q ss_pred cEEEEeCCCccc
Q 047655 279 KILYVSGHAFES 290 (370)
Q Consensus 279 ~VIiIDd~~~~~ 290 (370)
++++.+|++.-.
T Consensus 171 k~lVfeds~~Gv 182 (222)
T KOG2914|consen 171 KCLVFEDSPVGV 182 (222)
T ss_pred ceEEECCCHHHH
Confidence 999999998743
No 196
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=38.81 E-value=16 Score=32.47 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=19.8
Q ss_pred HHHhhhhcceeeEEEecCCchHHHHh
Q 047655 85 ATLTGVTAGAGYLTYAYSTDEIEEKT 110 (370)
Q Consensus 85 ~~~~g~~~~~~y~~~~~~~~e~d~~~ 110 (370)
.+++|++.|+||+.+.|.+|-.+|--
T Consensus 12 ~~~G~~ii~~G~~l~~y~tPTeEeL~ 37 (128)
T PF07960_consen 12 LVAGAVIIGGGPALVKYTTPTEEELF 37 (128)
T ss_pred HHhcceeEeechHHheecCCCHHHHH
Confidence 33457788899999999999766543
No 197
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=38.60 E-value=36 Score=31.74 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=30.8
Q ss_pred EEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhccc--EEEeccCchhcHHHH
Q 047655 187 VLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYE--IVVYSDQLNMYVDPV 240 (370)
Q Consensus 187 VLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YE--IVIfTs~~~~YA~~I 240 (370)
.||.||||+-...++ -....-|++.+.|+.|+.... |+|-|.-.....+.+
T Consensus 1 ~lDyDGTL~p~~~~p---~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP---DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp EEE-TTTSS---S-G---GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred CcccCCccCCCCCCc---cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 489999999654433 246677899999999998877 888888666554443
No 198
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=37.20 E-value=57 Score=37.19 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=42.3
Q ss_pred CCceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHh--cccEEEeccCchhcHHHHHhhcC
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAK--FYEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~--~YEIVIfTs~~~~YA~~Il~~LD 245 (370)
..+..|+||+||||+..... ....-|++.+-|+.|+. .-.++|-|.-.....+.++.-++
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~-----~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~ 655 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASI-----DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPCE 655 (854)
T ss_pred hcCeEEEEecCCcccCCccc-----cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 35788999999999954321 12233688888888854 46788888887777777776654
No 199
>PLN02382 probable sucrose-phosphatase
Probab=36.36 E-value=20 Score=37.09 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.0
Q ss_pred CceEEEEeCCCceecc
Q 047655 182 HVFTLVLDLNETLLYS 197 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs 197 (370)
+++.||.||||||+..
T Consensus 8 ~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCEEEEEcCCCcCcCC
Confidence 5889999999999964
No 200
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.10 E-value=63 Score=37.32 Aligned_cols=64 Identities=22% Similarity=0.148 Sum_probs=46.8
Q ss_pred CCceEEEEeCCCceeccccCCCC-c-----eeeeeCccHHHHHHHHHhc--ccEEEeccCchhcHHHHHhhc
Q 047655 181 QHVFTLVLDLNETLLYSDWKRDR-G-----WRTFKRPGVDAFLEHMAKF--YEIVVYSDQLNMYVDPVCERL 244 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~~~-G-----~~v~kRPgld~FL~~Ls~~--YEIVIfTs~~~~YA~~Il~~L 244 (370)
.++..|+||.||||+-...++.. + ..+..-|++-+-|+.|+.. -.|+|-|.-...-.+.++..+
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred ccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 45678899999999976444431 1 1233447788999999865 788999988888888877665
No 201
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=35.46 E-value=21 Score=33.24 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceecccc
Q 047655 183 VFTLVLDLNETLLYSDW 199 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~ 199 (370)
+...++|+||||++.+.
T Consensus 5 ~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDM 21 (210)
T ss_pred CcEEEEcCCCCCccCcc
Confidence 56689999999999763
No 202
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.21 E-value=1.5e+02 Score=28.51 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=63.2
Q ss_pred eeeCccHHHHHHHHHh-cccEEEeccCchhcHHHHHhhcCCC--cceeE-EEecCcccccC-----------C--ccccc
Q 047655 207 TFKRPGVDAFLEHMAK-FYEIVVYSDQLNMYVDPVCERLDTN--HCIRY-RLSRGATKYQD-----------G--KHYRD 269 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~-~YEIVIfTs~~~~YA~~Il~~LDP~--~~i~~-rL~Re~c~~~~-----------G--~~iKD 269 (370)
...-||+.+|...|.+ .-.+++-|-+-...+++|.+.|+-. +++.. .+|-..-.|.. | .-++-
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 3467899999999985 5899999999999999999999844 34333 33333222211 1 12344
Q ss_pred cccCCCCCCcEEEEeCCCccccCCCCccccCCCCCCC
Q 047655 270 LSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLE 306 (370)
Q Consensus 270 Ls~LgRDls~VIiIDd~~~~~~~qpeN~I~I~~w~gd 306 (370)
|.+ |.+-+.+++|-|-+.-...-|. ++-...|-|+
T Consensus 167 lrk-~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~ 201 (227)
T KOG1615|consen 167 LRK-NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGN 201 (227)
T ss_pred HHh-CCChheeEEecCCccccccCCc-hhhhhccCCc
Confidence 444 8888899999886654444333 3333333343
No 203
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=28.35 E-value=40 Score=35.69 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=3.0
Q ss_pred EEeCCCc
Q 047655 187 VLDLNET 193 (370)
Q Consensus 187 VLDLDeT 193 (370)
++.|.|+
T Consensus 326 ~~ELeGk 332 (480)
T KOG2675|consen 326 VKELEGK 332 (480)
T ss_pred ceeeccc
Confidence 3444444
No 204
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.97 E-value=82 Score=25.91 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=23.5
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQ 232 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~ 232 (370)
..+|||+=|||.|.+ ++|+..|-..-++++-+.+
T Consensus 39 ~~~lvLeeDGT~Vd~----------------EeyF~tLpdnT~lm~L~~g 72 (81)
T cd06537 39 VLTLVLEEDGTAVDS----------------EDFFELLEDDTCLMVLEQG 72 (81)
T ss_pred ceEEEEecCCCEEcc----------------HHHHhhCCCCCEEEEECCC
Confidence 489999999999965 3455555555555555444
No 205
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=26.24 E-value=89 Score=25.51 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=23.7
Q ss_pred ceEEEEeCCCceeccccCCCCceeeeeCccHHHHHHHHHhcccEEEeccC
Q 047655 183 VFTLVLDLNETLLYSDWKRDRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQ 232 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~~~~~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~ 232 (370)
..+|||+=|||.|.+ ++|+..|-..-++|+-+.+
T Consensus 40 ~~~lvL~eDGT~Vd~----------------EeyF~~LpdnT~lm~L~~g 73 (78)
T cd06539 40 LVTLVLEEDGTVVDT----------------EEFFQTLGDNTHFMVLEKG 73 (78)
T ss_pred CcEEEEeCCCCEEcc----------------HHHHhhCCCCCEEEEECCC
Confidence 689999999999965 3455555555555555444
No 206
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=26.17 E-value=81 Score=33.09 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=39.6
Q ss_pred CCceEEEEeCCCceeccccCC-----CCceeeeeCccHHHHHHHHHhcccEEEeccCc
Q 047655 181 QHVFTLVLDLNETLLYSDWKR-----DRGWRTFKRPGVDAFLEHMAKFYEIVVYSDQL 233 (370)
Q Consensus 181 ~~k~TLVLDLDeTLVhs~~~~-----~~G~~v~kRPgld~FL~~Ls~~YEIVIfTs~~ 233 (370)
...+..-+|||||||...... ...|++..+++-..+=..=.+-|-++|||.+.
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 345678999999999976532 35688888888777554445779999999765
No 207
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.05 E-value=22 Score=31.21 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhcceeeEEEe
Q 047655 72 RKSSWRFLTYGIVATLTGVTAGAGYLTYA 100 (370)
Q Consensus 72 ~~~~~~~~~~~~~~~~~g~~~~~~y~~~~ 100 (370)
.+..|+-. ++.+ +++||++|.+|.
T Consensus 103 p~~~wr~~--~~~a---~~~~Gl~~~~y~ 126 (136)
T PF04695_consen 103 PQRTWRDV--FITA---YAFGGLGYGLYG 126 (136)
T ss_dssp -----------------------------
T ss_pred ccchHHHH--HHHH---HHHHHHHHHHHH
Confidence 44567654 3333 334444454444
No 208
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.18 E-value=74 Score=27.88 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=31.5
Q ss_pred CceEEEEeCCCc--eeccccCCCCceeeeeCccHHHHHHHHH-hcccEEEeccCchh
Q 047655 182 HVFTLVLDLNET--LLYSDWKRDRGWRTFKRPGVDAFLEHMA-KFYEIVVYSDQLNM 235 (370)
Q Consensus 182 ~k~TLVLDLDeT--LVhs~~~~~~G~~v~kRPgld~FL~~Ls-~~YEIVIfTs~~~~ 235 (370)
+..+|++|+|-. -+|..|.. ...++.++.||+.+. ..|++||.=+....
T Consensus 28 g~~vllvD~D~q~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~ 79 (169)
T cd02037 28 GYKVGLLDADIYGPSIPKMWRG-----PMKMGAIKQFLTDVDWGELDYLVIDMPPGT 79 (169)
T ss_pred CCcEEEEeCCCCCCCchHHHhC-----cchHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 578889988832 22221211 124456778888776 78999999887654
No 209
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=24.92 E-value=62 Score=33.05 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=13.6
Q ss_pred CCcHHHHHHhhcCCChH--HHHHHHHH
Q 047655 327 PADIRAVLASYEKKDIA--KEFLERSK 351 (370)
Q Consensus 327 v~DVR~vL~sy~~~di~--~ef~~r~~ 351 (370)
...+...|+.|-..|-+ ..|.+..+
T Consensus 300 L~~A~~wl~~yFd~~~~~~~~~l~~L~ 326 (372)
T PF04375_consen 300 LQRAQQWLNRYFDTDSPAVQAFLAELQ 326 (372)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45556667666655443 44555443
No 210
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=23.85 E-value=1.1e+02 Score=31.23 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=37.2
Q ss_pred eeeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhc-C
Q 047655 205 WRTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERL-D 245 (370)
Q Consensus 205 ~~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~L-D 245 (370)
-++.+=||+.++|+.|.+. ..+.|-|++...|++.+++.+ +
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 4678899999999999865 899999999999999999997 6
No 211
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.73 E-value=1.1e+02 Score=25.12 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.1
Q ss_pred CceEEEEeCCCceecc
Q 047655 182 HVFTLVLDLNETLLYS 197 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs 197 (370)
...+|||+-|||.|-.
T Consensus 41 ~~~~lvL~eDGT~Vdd 56 (80)
T cd06536 41 APITLVLAEDGTIVED 56 (80)
T ss_pred CceEEEEecCCcEEcc
Confidence 4689999999999965
No 212
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=23.59 E-value=44 Score=30.21 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=12.0
Q ss_pred ceEEEEeCCCceeccc
Q 047655 183 VFTLVLDLNETLLYSD 198 (370)
Q Consensus 183 k~TLVLDLDeTLVhs~ 198 (370)
+..|.+|+||||....
T Consensus 2 ~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFN 17 (191)
T ss_dssp -EEEEEESBTTTB-HH
T ss_pred CcEEEEECCCCCcccH
Confidence 5569999999999753
No 213
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.04 E-value=23 Score=27.32 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHhhhhcceeeEEEe
Q 047655 74 SSWRFLTYGIVATLTGVTAGAGYLTYA 100 (370)
Q Consensus 74 ~~~~~~~~~~~~~~~g~~~~~~y~~~~ 100 (370)
+.||++ ++++.++|++|.+.|-++-
T Consensus 3 rg~r~~--~~~ggfVg~iG~a~Ypi~~ 27 (58)
T PF15061_consen 3 RGWRYA--LFVGGFVGLIGAALYPIYF 27 (58)
T ss_pred ccccch--hhHHHHHHHHHHHHhhhhc
Confidence 357766 6777788888888886654
No 214
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.75 E-value=49 Score=29.20 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=12.5
Q ss_pred eEEEEeCCCceeccc
Q 047655 184 FTLVLDLNETLLYSD 198 (370)
Q Consensus 184 ~TLVLDLDeTLVhs~ 198 (370)
.++++|.||||....
T Consensus 2 ~~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 2 DAICFDKTGTLTQGK 16 (215)
T ss_dssp SEEEEECCTTTBESH
T ss_pred eEEEEecCCCcccCe
Confidence 378999999998754
No 215
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=22.71 E-value=89 Score=30.59 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=30.9
Q ss_pred eeeeCccHHHHHHHHHhc-ccEEEeccCchhcHHHHHhhcC
Q 047655 206 RTFKRPGVDAFLEHMAKF-YEIVVYSDQLNMYVDPVCERLD 245 (370)
Q Consensus 206 ~v~kRPgld~FL~~Ls~~-YEIVIfTs~~~~YA~~Il~~LD 245 (370)
.+..|.|+++|++.|.++ -=+.|||+|.....+.+++.-.
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~ 128 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAG 128 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcC
Confidence 588999999999999965 5888999999999999998863
No 216
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.06 E-value=1.2e+02 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=14.1
Q ss_pred CceEEEEeCCCceecc
Q 047655 182 HVFTLVLDLNETLLYS 197 (370)
Q Consensus 182 ~k~TLVLDLDeTLVhs 197 (370)
...+|||+-|||.|-.
T Consensus 39 ~~~~lvL~eDGTeVdd 54 (78)
T cd01615 39 APVTLVLEEDGTEVDD 54 (78)
T ss_pred CCeEEEEeCCCcEEcc
Confidence 5789999999999965
No 217
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=22.03 E-value=1.1e+02 Score=25.00 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=13.3
Q ss_pred ceEEEEeCCCceecc
Q 047655 183 VFTLVLDLNETLLYS 197 (370)
Q Consensus 183 k~TLVLDLDeTLVhs 197 (370)
..+|||+-|||.|-.
T Consensus 39 ~~~lvL~eDGT~Vd~ 53 (79)
T cd06538 39 ISSLVLDEDGTGVDT 53 (79)
T ss_pred ccEEEEecCCcEEcc
Confidence 489999999999965
No 218
>TIGR03781 Bac_Flav_CT_K Bacteroides conjugative transposon TraK protein. Members of this protein family are designated TraK and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. PSI-BLAST reveals a distant relationship to proteins TrbF and VirB8 in Proteobacterial conjugal transfer systems.
Probab=21.21 E-value=1e+02 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHhhhhcceeeEEEec
Q 047655 73 KSSWRFLTYGIVATLTGVTAGAGYLTYAY 101 (370)
Q Consensus 73 ~~~~~~~~~~~~~~~~g~~~~~~y~~~~~ 101 (370)
=|-||++-++.++..++++||.+|.+|..
T Consensus 8 ~rnwRl~a~~~l~la~~~~~g~V~~s~~~ 36 (202)
T TIGR03781 8 FRQIRLFAIAFVALCILITGYALWSSYSF 36 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhheEEEEEecc
Confidence 46799988888887777777788888544
No 219
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=21.14 E-value=32 Score=27.03 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcceeeEEEe
Q 047655 81 YGIVATLTGVTAGAGYLTYA 100 (370)
Q Consensus 81 ~~~~~~~~g~~~~~~y~~~~ 100 (370)
|..+..+++++|++||++|.
T Consensus 36 Wl~Lvp~~~~va~igYlayk 55 (64)
T PF10660_consen 36 WLALVPFAAAVAGIGYLAYK 55 (64)
T ss_dssp --------------------
T ss_pred HHHHHhHHHHHHHHHHHhhe
Confidence 45566778888999999885
No 220
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.73 E-value=58 Score=33.28 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 047655 352 DYQRRMQEQR 361 (370)
Q Consensus 352 ~~~~~~~~~~ 361 (370)
.+++.+++..
T Consensus 346 aL~~~~~~r~ 355 (372)
T PF04375_consen 346 ALQQLIQQRL 355 (372)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 221
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=20.52 E-value=1.1e+02 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=25.4
Q ss_pred eeeCccHHHHHHHHHhcccEEEeccCchh
Q 047655 207 TFKRPGVDAFLEHMAKFYEIVVYSDQLNM 235 (370)
Q Consensus 207 v~kRPgld~FL~~Ls~~YEIVIfTs~~~~ 235 (370)
...-||.++-+++|-+.|+|.|-|+++..
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdh 95 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDH 95 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCC
Confidence 45679999999999999999999998543
No 222
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=20.39 E-value=54 Score=35.03 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.9
Q ss_pred cEEEeccCchhcHHHHHhh-cC
Q 047655 225 EIVVYSDQLNMYVDPVCER-LD 245 (370)
Q Consensus 225 EIVIfTs~~~~YA~~Il~~-LD 245 (370)
+.||-|++...|++++++. |.
T Consensus 124 ~~vvVSASp~~~Vepfa~~~LG 145 (497)
T PLN02177 124 KRYIITASPRIMVEPFVKTFLG 145 (497)
T ss_pred CEEEEECCcHHHHHHHHHHcCC
Confidence 4699999999999999965 44
No 223
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=20.09 E-value=1.3e+02 Score=24.29 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=13.6
Q ss_pred ceEEEEeCCCceecc
Q 047655 183 VFTLVLDLNETLLYS 197 (370)
Q Consensus 183 k~TLVLDLDeTLVhs 197 (370)
..+|||+=|||.|-.
T Consensus 38 ~~~l~L~eDGT~Vdd 52 (74)
T smart00266 38 PVTLVLEEDGTIVDD 52 (74)
T ss_pred CcEEEEecCCcEEcc
Confidence 689999999999965
No 224
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.08 E-value=78 Score=31.77 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=25.3
Q ss_pred CCChHHhhhHHHHHHHHhCCCCcHHHHHHhhcCCChH-HHHHHHHHHHH
Q 047655 307 PDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIA-KEFLERSKDYQ 354 (370)
Q Consensus 307 ~~D~eLl~LipfLe~La~~~v~DVR~vL~sy~~~di~-~ef~~r~~~~~ 354 (370)
.+|.||.+++.=+. ++.|+.||+.+-+ +|+-||.++..
T Consensus 55 ~nDpEmK~iid~~n----------~eaikkyqqT~~~f~e~~e~~~k~~ 93 (295)
T TIGR01478 55 HNDPELKEIIDKLN----------EEAIKKYQETHDPYEQLQELVEKNR 93 (295)
T ss_pred CCcHHHHHHHHHHh----------HHHhhhhhhhcchHHHHHHHHHhcC
Confidence 46778887766543 5688999986554 66666654333
Done!