BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047658
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis
sativus GN=psaD PE=1 SV=1
Length = 207
Score = 305 bits (782), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/208 (73%), Positives = 175/208 (84%), Gaps = 6/208 (2%)
Query: 1 MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKP-LTFSMAQRTVRAAAAEEKTEA 59
MATQA LFTPS+ T K++ + + PWK +S+ SF + KP L + + R+ + +A E +
Sbjct: 3 MATQATLFTPSLSTPKSTGISI-PWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETS-- 59
Query: 60 PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 119
EAP GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 60 --VEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 117
Query: 120 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 179
IMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 118 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 177
Query: 180 RQGVGVNYRSIGKNVSPIEHKTELKKFH 207
R+GVG N+RSIGKNVSPIE K K+ +
Sbjct: 178 REGVGQNFRSIGKNVSPIEVKFTGKQVY 205
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic
OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1
Length = 204
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/202 (74%), Positives = 166/202 (82%), Gaps = 9/202 (4%)
Query: 1 MATQA-GLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTEA 59
MATQA G+F+P+I TT ++ L+ + +S +P + S + +RA E + A
Sbjct: 1 MATQAAGIFSPAITTTTSAVKKLHLFS-------SSHRPKSLSFTKTAIRAEKTESSSAA 53
Query: 60 P-TKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118
P KEAPVGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGA
Sbjct: 54 PAVKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGA 113
Query: 119 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 178
AIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NP
Sbjct: 114 AIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANP 173
Query: 179 GRQGVGVNYRSIGKNVSPIEHK 200
GR+GVG+N RSIGKNVSPIE K
Sbjct: 174 GREGVGLNMRSIGKNVSPIEVK 195
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum
lycopersicum GN=psaD PE=2 SV=1
Length = 208
Score = 295 bits (754), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/208 (74%), Positives = 168/208 (80%), Gaps = 5/208 (2%)
Query: 1 MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMA-QRTVRAAAAEEKTEA 59
MATQA LFTP + K++ PWK S SF++PK L +++ R +RA A E
Sbjct: 3 MATQASLFTPPLSVPKSTTA---PWK-QSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAAT 58
Query: 60 PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 119
K AP GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 59 EEKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 118
Query: 120 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 179
IMRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG
Sbjct: 119 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 178
Query: 180 RQGVGVNYRSIGKNVSPIEHKTELKKFH 207
R+GVG N+RSIGKN S IE K K+ +
Sbjct: 179 REGVGQNFRSIGKNKSAIEVKFTGKQVY 206
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic
OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1
Length = 208
Score = 291 bits (745), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/209 (73%), Positives = 166/209 (79%), Gaps = 19/209 (9%)
Query: 1 MATQA-GLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTEA 59
MATQA G+F +I T TS + K FS T+ +P + S + +RA EKT++
Sbjct: 1 MATQAAGIFNSAITTAATSGV-----KKLHFFS-TTHRPKSLSFTKTAIRA----EKTDS 50
Query: 60 P--------TKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIF 111
TKEAPVGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIF
Sbjct: 51 SAAAAAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIF 110
Query: 112 EMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGV 171
EMPTGGAAIMR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGV
Sbjct: 111 EMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGV 170
Query: 172 YPEKVNPGRQGVGVNYRSIGKNVSPIEHK 200
YPEK NPGR+GVG+N RSIGKNVSPIE K
Sbjct: 171 YPEKANPGREGVGLNMRSIGKNVSPIEVK 199
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic
OS=Nicotiana sylvestris GN=psaD PE=2 SV=1
Length = 204
Score = 284 bits (727), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/208 (75%), Positives = 169/208 (81%), Gaps = 9/208 (4%)
Query: 1 MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSM-AQRTVRAAAAEEKTEA 59
MATQA LFTP++ K+S PWK S + SPK L ++ A R +RA A E T+
Sbjct: 3 MATQASLFTPALSAPKSSA----PWK--QSLASFSPKQLKSTVSAPRPIRAMAEEAATK- 55
Query: 60 PTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 119
EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA
Sbjct: 56 -EAEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAA 114
Query: 120 IMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 179
IMR+G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN G
Sbjct: 115 IMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAG 174
Query: 180 RQGVGVNYRSIGKNVSPIEHKTELKKFH 207
RQGVG N+RSIGKN SPIE K K+ +
Sbjct: 175 RQGVGQNFRSIGKNKSPIEVKFTGKQVY 202
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia
oleracea GN=psaD PE=1 SV=2
Length = 212
Score = 284 bits (726), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/202 (74%), Positives = 165/202 (81%), Gaps = 3/202 (1%)
Query: 1 MATQAGLFTPSIITTK--TSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKTE 58
MATQA LF+PS +++ L +K S+ +F S KP + + R AA +
Sbjct: 3 MATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS-KPASRHHSIRAAAAAEGKAAAA 61
Query: 59 APTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118
TKEAP GFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA
Sbjct: 62 TETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 121
Query: 119 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNP 178
AIMR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPEKVNP
Sbjct: 122 AIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNP 181
Query: 179 GRQGVGVNYRSIGKNVSPIEHK 200
GRQGVG+N RSIGKNVSPIE K
Sbjct: 182 GRQGVGLNMRSIGKNVSPIEVK 203
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum
vulgare GN=psaD PE=1 SV=1
Length = 205
Score = 263 bits (673), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/208 (68%), Positives = 153/208 (73%), Gaps = 22/208 (10%)
Query: 1 MATQAGLFTPSIITTKTSKLLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAA-------- 52
MATQA T +IT W P++ P+P T +M + R A
Sbjct: 3 MATQASAATRHLITAA--------WSPSAK-----PRPATLAMPS-SARGPAPLFAAAPD 48
Query: 53 AEEKTEAPTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFE 112
P + AP GF PPQLDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FE
Sbjct: 49 TPAPAAPPAEPAPAGFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFE 108
Query: 113 MPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVY 172
MPTGGAAIMR+GPNLLKLARKEQCLALG RLRSKYKI YQFYRVFPNGEVQYLHPKDGVY
Sbjct: 109 MPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVY 168
Query: 173 PEKVNPGRQGVGVNYRSIGKNVSPIEHK 200
PEKVN GRQGVG N+RSIGKNVSPIE K
Sbjct: 169 PEKVNAGRQGVGQNFRSIGKNVSPIEVK 196
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic
OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1
Length = 196
Score = 213 bits (541), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/133 (75%), Positives = 114/133 (85%)
Query: 68 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNL 127
+T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAIMRQGPNL
Sbjct: 53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNL 112
Query: 128 LKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNY 187
LK +KEQCLAL T+LR+K+K+ FYRVFP+G+VQYLHP DGVYPEKVN GR G N
Sbjct: 113 LKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAGRVGANQNM 172
Query: 188 RSIGKNVSPIEHK 200
R IG+NV+PI+ K
Sbjct: 173 RRIGQNVNPIKVK 185
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora
paradoxa GN=psaD PE=2 SV=1
Length = 220
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/138 (66%), Positives = 110/138 (79%), Gaps = 1/138 (0%)
Query: 64 APVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQ 123
AP F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW E +FE+PTGGAAIMR
Sbjct: 70 APKPFSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRA 129
Query: 124 GPNLLKLARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 182
G NLL+LARKEQC+ALG +L+ K+KI Y+ YRV+P+GEVQ+LHPKDGV+PEKVNPGR
Sbjct: 130 GENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNPGRVA 189
Query: 183 VGVNYRSIGKNVSPIEHK 200
VG N R IG+N P + K
Sbjct: 190 VGSNKRRIGQNPDPAKLK 207
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta
GN=psaD PE=3 SV=1
Length = 141
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/135 (67%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLAR 132
L+ PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAIMR+G NLL LAR
Sbjct: 5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLAR 64
Query: 133 KEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIG 191
KEQCLALGT++++ +KI Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR GVG SIG
Sbjct: 65 KEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRIGVGNVSHSIG 124
Query: 192 KNVSPIEHKTELKKF 206
KN++P + K K F
Sbjct: 125 KNLNPAQIKFTNKSF 139
>sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS=Porphyra yezoensis
GN=psaD PE=3 SV=1
Length = 141
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 70 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLK 129
P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR G NLL
Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRNGENLLY 61
Query: 130 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYR 188
LA+KEQCLALGT+L+SK+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR V
Sbjct: 62 LAKKEQCLALGTQLKSKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNTGRASVNSVDH 121
Query: 189 SIGKNVSPIEHK 200
SIG+N++P++ K
Sbjct: 122 SIGQNINPVDVK 133
>sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS=Porphyra purpurea
GN=psaD PE=3 SV=1
Length = 141
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/132 (65%), Positives = 98/132 (74%), Gaps = 1/132 (0%)
Query: 70 PPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLK 129
P ++ N PSP FGGSTGG LR A+VEE Y ITW E FEMPTGG A MR G NLL
Sbjct: 2 PDTINLNMPSPTFGGSTGGWLRAAEVEEKYAITWTGKNESKFEMPTGGTATMRDGENLLY 61
Query: 130 LARKEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYR 188
LA+KEQCLALGT+L+ K+KI Y+ YRVFPNGEVQYLHPKDGV+PEKVN GR +
Sbjct: 62 LAKKEQCLALGTQLKGKFKISDYKIYRVFPNGEVQYLHPKDGVFPEKVNAGRASINSVDH 121
Query: 189 SIGKNVSPIEHK 200
SIGKNV+PI K
Sbjct: 122 SIGKNVNPINVK 133
>sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS=Odontella sinensis
GN=psaD PE=3 SV=1
Length = 139
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 98/128 (76%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLAR 132
L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGGAAIMR G NLL LAR
Sbjct: 3 LNLQTPFPTFGGSTGGWLRAAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLAR 62
Query: 133 KEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGK 192
KEQCLALGT+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR V SIGK
Sbjct: 63 KEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGK 122
Query: 193 NVSPIEHK 200
N +P K
Sbjct: 123 NPNPASIK 130
>sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS=Mastigocladus laminosus
GN=psaD PE=3 SV=1
Length = 142
Score = 176 bits (447), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/122 (68%), Positives = 97/122 (79%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+PIFGGSTGGLL+KA+VEE Y ITW SPKEQ+FEMPTGGAA MRQG NLL LARKEQC+A
Sbjct: 9 TPIFGGSTGGLLKKAEVEEKYAITWTSPKEQVFEMPTGGAAKMRQGQNLLYLARKEQCIA 68
Query: 139 LGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIE 198
LG++LR Y+ YR++PNGE Y+HP DGV+PEKVNPGRQ V N R IG+N P +
Sbjct: 69 LGSQLRRLKITDYKIYRIYPNGETAYIHPADGVFPEKVNPGRQKVRYNDRRIGQNPDPAK 128
Query: 199 HK 200
K
Sbjct: 129 LK 130
>sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS=Skeletonema costatum
GN=psaD PE=3 SV=1
Length = 139
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 97/128 (75%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLAR 132
L+ TP P FGGSTGG LR A+VEE Y ITW S KEQIFEMPTGG+AIMR G NLL LAR
Sbjct: 3 LNLKTPFPTFGGSTGGWLRAAEVEEKYAITWTSAKEQIFEMPTGGSAIMRNGENLLYLAR 62
Query: 133 KEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGK 192
KEQCLAL T+LR+ Y+ YR+FP+GEVQYLHPKDGV+PEKVNPGR V SIGK
Sbjct: 63 KEQCLALSTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRGFSIGK 122
Query: 193 NVSPIEHK 200
N +P K
Sbjct: 123 NPNPASIK 130
>sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaD PE=1 SV=2
Length = 141
Score = 168 bits (425), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 94/121 (77%), Gaps = 3/121 (2%)
Query: 80 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLAL 139
P FGGSTGGLL KA EE Y ITW S EQ+FEMPTGGAAIM +G NLL LARKEQCLAL
Sbjct: 9 PKFGGSTGGLLSKANREEKYAITWTSASEQVFEMPTGGAAIMNEGENLLYLARKEQCLAL 68
Query: 140 GTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSP 196
GT+LR+K+K K Y+ YRV+P+GEVQYLHP DGV+PEKVN GR+ G R IG+N P
Sbjct: 69 GTQLRTKFKPKIQDYKIYRVYPSGEVQYLHPADGVFPEKVNEGREAQGTKTRRIGQNPEP 128
Query: 197 I 197
+
Sbjct: 129 V 129
>sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS=Cyanidium caldarium
GN=psaD PE=3 SV=1
Length = 140
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 98/134 (73%), Gaps = 5/134 (3%)
Query: 73 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLAR 132
L+ PSP F G+TGG LR + +EE Y ITW S E IFE+PTGG A M+ G NLL LA+
Sbjct: 5 LNLKMPSPEFYGNTGGWLRSSDIEEKYAITWSSKNEDIFEIPTGGVAKMKAGDNLLYLAK 64
Query: 133 KEQCLALGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIG 191
KEQCLALG +L+ K+KI ++ YR+FPNGE Q+LHPKDGV+PEKVN GR+ +G +IG
Sbjct: 65 KEQCLALGNQLKIKFKILNFKIYRIFPNGEAQFLHPKDGVFPEKVNEGRKPIGKIDHNIG 124
Query: 192 KNVSPIE----HKT 201
KN++P E HKT
Sbjct: 125 KNLNPAEVKFTHKT 138
>sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaD
PE=1 SV=3
Length = 142
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 3/121 (2%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+P+FGGSTGGLL+ A+ EE Y ITW S KEQ+FE+PTGGAA+M +G NLL ARKEQ LA
Sbjct: 9 TPVFGGSTGGLLKSAETEEKYAITWTSTKEQVFELPTGGAAVMHEGDNLLYFARKEQALA 68
Query: 139 LGTRLRSKYKIK---YQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVS 195
LGT+LR+K+K K Y+ YR FP +V YLHPKDGV+PEKVN GR G R IG+N +
Sbjct: 69 LGTQLRTKFKPKIESYKIYRFFPGADVGYLHPKDGVFPEKVNEGRSFAGKVDRRIGQNPN 128
Query: 196 P 196
P
Sbjct: 129 P 129
>sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC
8009) GN=psaD PE=1 SV=1
Length = 138
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+P+F GSTGGLL KA VEE Y ITW SPK Q+FE+PTGGAA M QG NLL LARKEQ +A
Sbjct: 8 TPLFAGSTGGLLTKANVEEKYAITWTSPKAQVFELPTGGAATMNQGENLLYLARKEQGIA 67
Query: 139 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPI 197
LG +LR K+KI Y+ YR+FPNGE ++HP DGV+PEKVN GR+ V R IG+N SP
Sbjct: 68 LGGQLR-KFKITDYKIYRIFPNGETTFIHPADGVFPEKVNEGREKVRFVPRRIGQNPSPA 126
Query: 198 EHK 200
+ K
Sbjct: 127 QLK 129
>sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS=Thermosynechococcus
vulcanus GN=psaD PE=1 SV=2
Length = 139
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 80 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLAL 139
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 140 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIE 198
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GR+ V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 199 HKTELKK 205
K KK
Sbjct: 129 LKFTGKK 135
>sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaD PE=1 SV=2
Length = 139
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 80 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLAL 139
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 140 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIE 198
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GR+ V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 199 HKTELKK 205
K KK
Sbjct: 129 LKFTGKK 135
>sp|P0A421|PSAD_SYNEL Photosystem I reaction center subunit II OS=Synechococcus elongatus
GN=psaD PE=1 SV=2
Length = 139
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%), Gaps = 1/127 (0%)
Query: 80 PIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLAL 139
P++GGSTGGLL A EE Y ITW SPKEQ+FEMPT GAA+MR+G NL+ ARKEQCLAL
Sbjct: 9 PLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLAL 68
Query: 140 GT-RLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIE 198
+LR + Y+ YR+FP+GE +HPKDGV+PEKVN GR+ V RSIG+N +P +
Sbjct: 69 AAQQLRPRKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQ 128
Query: 199 HKTELKK 205
K KK
Sbjct: 129 LKFTGKK 135
>sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaD PE=1 SV=3
Length = 139
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 93/123 (75%), Gaps = 2/123 (1%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+P+F GSTGGLL KA EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE +A
Sbjct: 9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIA 68
Query: 139 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPI 197
LG +LR K+KI Y+ YR+ P+GE ++HP DGV+PEKVNPGR+ V N RSIG+N +P
Sbjct: 69 LGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNPGREKVRFNARSIGENPNPS 127
Query: 198 EHK 200
+ K
Sbjct: 128 QVK 130
>sp|P58573|PSAD_NOSS1 Photosystem I reaction center subunit II OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=psaD PE=3 SV=1
Length = 139
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+P+F GSTGGLL KA EE Y ITW SPK Q+FE+PTGGAA M +G NLL +ARKE +A
Sbjct: 9 TPLFAGSTGGLLTKAVEEEKYAITWTSPKAQVFELPTGGAATMHEGENLLYIARKEYGIA 68
Query: 139 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPI 197
LG +LR K+KI Y+ YR+ P+GE ++HP DGV+PEKVN GR+ V N RSIG+N +P
Sbjct: 69 LGGQLR-KFKITNYKIYRILPSGETTFIHPADGVFPEKVNAGREKVRFNARSIGENPNPS 127
Query: 198 EHK 200
+ K
Sbjct: 128 QVK 130
>sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS=Fremyella diplosiphon
GN=psaD PE=1 SV=1
Length = 138
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%), Gaps = 2/119 (1%)
Query: 79 SPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLA 138
+P+F GSTGGLL+KA+VEE Y ITW SPK Q+FE+PTGGAA M+QG NLL LARKE +A
Sbjct: 8 TPLFAGSTGGLLKKAEVEEKYAITWTSPKAQVFELPTGGAATMQQGQNLLYLARKEYGIA 67
Query: 139 LGTRLRSKYKI-KYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSP 196
LG +LR K+KI Y+ YR+ P GE +HP DGV+PEKVN GR+ V R IG+N +P
Sbjct: 68 LGGQLR-KFKITDYKIYRILPGGETTLIHPADGVFPEKVNAGREKVRFVPRRIGENPNP 125
>sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS=Gloeobacter violaceus
(strain PCC 7421) GN=psaD PE=1 SV=1
Length = 144
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 96/143 (67%), Gaps = 10/143 (6%)
Query: 59 APTKEAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGA 118
A KE P G + +P+FGGSTGGLLRKAQ+EE Y+I W S +EQ+FEMPTGGA
Sbjct: 2 ADVKELPFGGS---------TPLFGGSTGGLLRKAQIEEKYLIVWNSKEEQVFEMPTGGA 52
Query: 119 AIMRQGPNLLKLARKEQCLALGTRLRSKYKIK-YQFYRVFPNGEVQYLHPKDGVYPEKVN 177
A M G N+L LARKEQC AL +L S +KI+ + YRV+PNGE + P DGV EK N
Sbjct: 53 ATMVAGTNVLYLARKEQCHALHRQLVSTFKIRDSKIYRVYPNGEQVLIFPMDGVPSEKSN 112
Query: 178 PGRQGVGVNYRSIGKNVSPIEHK 200
PGR+ VG R IG N +P++ K
Sbjct: 113 PGREVVGYVPRKIGDNPNPVDVK 135
>sp|P84563|PSAD_POPEU Photosystem I reaction center subunit II (Fragment) OS=Populus
euphratica GN=psaD PE=1 SV=1
Length = 29
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 63 EAPVGFTPPQLDPNTPSPIFGGSTGGLLR 91
EAPVGFTPP+LDP+TPSPIFGGSTGGLLR
Sbjct: 1 EAPVGFTPPELDPSTPSPIFGGSTGGLLR 29
>sp|P20117|PSAD_PEA Photosystem I reaction center subunit II (Fragment) OS=Pisum
sativum GN=psaD PE=1 SV=1
Length = 36
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 57 TEAPTKEAPVGFTPPQLDPNTPSPIFG 83
T+ T EAPVGFTP +LDPNT S IFG
Sbjct: 10 TDVATXEAPVGFTPXELDPNTXSXIFG 36
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,444,739
Number of Sequences: 539616
Number of extensions: 4151192
Number of successful extensions: 10489
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10431
Number of HSP's gapped (non-prelim): 52
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)