Query 047658
Match_columns 229
No_of_seqs 88 out of 90
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 23:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_D Photosystem I reaction 100.0 1E-107 5E-112 696.6 7.5 205 1-208 3-211 (212)
2 1jb0_D Photosystem 1 reaction 100.0 1.9E-92 6.3E-97 574.2 6.3 135 74-209 2-138 (138)
3 3qu6_A IRF3 protein; helix-tur 25.0 24 0.0008 27.7 1.1 10 151-160 107-116 (116)
4 2vog_B BCL-2-modifying factor; 23.4 26 0.0009 21.9 0.9 11 128-138 7-17 (27)
5 4ddp_A Beclin-1; ECD, autophag 21.9 20 0.00069 30.4 0.2 32 135-166 69-100 (210)
6 3vp7_A Vacuolar protein sortin 20.7 23 0.00079 30.3 0.3 31 135-165 43-73 (220)
7 4ayb_K DNA-directed RNA polyme 19.3 61 0.0021 24.7 2.3 32 126-166 60-91 (95)
8 1jlx_A Agglutinin, amaranthin, 19.0 23 0.00077 32.0 -0.2 62 98-166 149-214 (303)
9 2dll_A Interferon regulatory f 17.4 51 0.0017 25.6 1.5 12 151-162 107-118 (121)
10 2rkq_A Peptidoglycan-recogniti 16.4 71 0.0024 24.8 2.1 77 133-224 42-130 (169)
No 1
>2wsc_D Photosystem I reaction center subunit II, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_D* 2wsf_D* 2o01_D* 3lw5_D*
Probab=100.00 E-value=1.4e-107 Score=696.61 Aligned_cols=205 Identities=74% Similarity=1.105 Sum_probs=136.8
Q ss_pred CccccccCCCccccc-cCCc-cccccCCCCCcceecCCCCccccchhhHHHHHhhhccC-CCC-CCCCCCCCCCCcCCCC
Q 047658 1 MATQAGLFTPSIITT-KTSK-LLLNPWKPTSSFSFTSPKPLTFSMAQRTVRAAAAEEKT-EAP-TKEAPVGFTPPQLDPN 76 (229)
Q Consensus 1 MAtQas~~tp~~~t~-~~~~-~~~~p~k~~s~~s~~s~~~~~~~~~~~~~~a~~~~~~a-~~~-~~~ap~~f~pp~l~~~ 76 (229)
|||||++|+|+++++ +++. .+..|||++++++|+ +++ ..++.+.++++++|+++ +++ ++++|++|+||+||++
T Consensus 3 matqa~~~~~~~~s~~~~~~~~~~~~w~~s~~~~~~-~k~--~~~~~~~~~a~~ae~~~a~~~~~~~ap~~f~p~~~~l~ 79 (212)
T 2wsc_D 3 MGTPATLFSRSSLSSAKPIETRLTTSFKQPSAVTFA-SKP--ASRLHTIRAAAAAEGKAAAATETKEATKAFTPPELDPN 79 (212)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred cccccccccccccccccccccccccccccccccccc-ccc--cccccchhhhhhcccccccccccccCCCccCCccccCC
Confidence 789999999998776 3333 236799999999997 444 33333444443555433 333 3689999999999999
Q ss_pred CCCcccccCccccccccccceeEEEEecCCcceeeeccCCcchhcccCcchhhhhhhhhHHHhhhccccceeeeeeeeee
Q 047658 77 TPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRV 156 (229)
Q Consensus 77 tp~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtqLrtkfKI~ykiYRi 156 (229)
+|+|+||||||||||+||+||||||||+|+|||||||||||||+||+|+|||||||||||||||+|||+|||||||||||
T Consensus 80 ~~~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtqLrtkfKIdykiYRi 159 (212)
T 2wsc_D 80 TPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRV 159 (212)
T ss_dssp CCCSCCCCCSSSCCSTTTSSCCCEEECCCSSCCCCCTTTTCCCCCCCSSCEEECSSTTTTSHHHHTTTSSCCSCCEEECC
T ss_pred CCCcccccccccccccccceeeEEEEecCChhheeecCCCcchhhccCcchheehhHHHHHHHHHhhhhccccccceEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEeeccCCCCCCcccCCCccccCcccccCCCCCCCceeeeccchhhh
Q 047658 157 FPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEHKTELKKFHK 208 (229)
Q Consensus 157 fP~Gevq~LHPkDGVfPEKVN~GR~~vg~~~r~IGkN~nP~~vKFsgk~t~d 208 (229)
|||||+|||||||||||||||+||++||+|+|+||+|+||++|||+||++||
T Consensus 160 fP~Ge~q~LhPkDGVfPEKVN~GR~~vg~~~r~IG~N~nP~~~KFsgk~~yd 211 (212)
T 2wsc_D 160 FPSGEVQYLHPKDGVYPEKVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYD 211 (212)
T ss_dssp CSSCCSCCTTTSSSCSSSCCSCCCSCCCCSSSCSTTTTSCCCSCCCTTSSCC
T ss_pred cCCCceEEecCcCCCCccccCCcccccCcCcccccCCCCcceEEecCccccc
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.187.1.1 PDB: 3pcq_D*
Probab=100.00 E-value=1.9e-92 Score=574.18 Aligned_cols=135 Identities=57% Similarity=0.934 Sum_probs=133.2
Q ss_pred CCCCCCcccccCccccccccccceeEEEEecCCcceeeeccCCcchhcccCcchhhhhhhhhHHHhhhc-cccceee-ee
Q 047658 74 DPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTR-LRSKYKI-KY 151 (229)
Q Consensus 74 ~~~tp~P~FgGSTGGlLr~A~~EEkYaITWtS~keQvFEmPTGGAAiM~~G~NLLylARKEQClALgtq-LrtkfKI-~y 151 (229)
++++++|+||||||||||+||+||||||||+|++||||||||||||+||+|+|||||||||||||||+| ||+ ||| ||
T Consensus 2 ~l~~~~P~fgGSTGGlL~~A~~EEkYaITWtS~keQvFEmPTGGAA~M~~G~NLlylARKEQclALgtQqLrt-fKI~dy 80 (138)
T 1jb0_D 2 TLTGQPPLYGGSTGGLLSAADTEEKYAITWTSPKEQVFEMPTAGAAVMREGENLVYFARKEQCLALAAQQLRP-RKINDY 80 (138)
T ss_dssp CCCCBCCBCCCBTTSBCTHHHHTCEEEEEEEESSCEEEECTTSSEEEECSEEEEEEESSHHHHHHHHHHHTGG-GTCCCC
T ss_pred CcCCCCCccccccccccccccceeeEEEEecCChhhheecCCCchhhhccCcceeEeecHHHHHHhhhcceee-eecccc
Confidence 588999999999999999999999999999999999999999999999999999999999999999999 999 999 89
Q ss_pred eeeeecCCCceEeeccCCCCCCcccCCCccccCcccccCCCCCCCceeeeccchhhhh
Q 047658 152 QFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEHKTELKKFHKR 209 (229)
Q Consensus 152 kiYRifP~Gevq~LHPkDGVfPEKVN~GR~~vg~~~r~IGkN~nP~~vKFsgk~t~d~ 209 (229)
||||||||||+|||||||||||||||+||.+||+++|+||+||||++||||||++||+
T Consensus 81 kiYRifP~Ge~~~LhPkDGVfpEKvN~GR~~vg~~~r~IG~NpnP~~~KFsgk~t~d~ 138 (138)
T 1jb0_D 81 KIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSVPRSIGQNPNPSQLKFTGKKPYDP 138 (138)
T ss_dssp EEEEECTTCCEEEEETTTSSCSSSCCTTCCCCSEESSCGGGCCCHHHHTTSCCCTTCC
T ss_pred eEEEEcCCCceEEecCCCCCCcccccCcccccCcCcccccCCCCcceEEecCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 3
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=25.03 E-value=24 Score=27.65 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=6.9
Q ss_pred eeeeeecCCC
Q 047658 151 YQFYRVFPNG 160 (229)
Q Consensus 151 ykiYRifP~G 160 (229)
||||||-|.|
T Consensus 107 ~KVY~~~~~~ 116 (116)
T 3qu6_A 107 HKIYEFVNSG 116 (116)
T ss_dssp EEEEEEC---
T ss_pred eEEEEecCCC
Confidence 9999999987
No 4
>2vog_B BCL-2-modifying factor; protein-protein complex, BH3, apoptosis, Pro-surviVal; 1.9A {Mus musculus}
Probab=23.40 E-value=26 Score=21.89 Aligned_cols=11 Identities=55% Similarity=0.999 Sum_probs=8.7
Q ss_pred hhhhhhhhHHH
Q 047658 128 LKLARKEQCLA 138 (229)
Q Consensus 128 LylARKEQClA 138 (229)
...|||=||++
T Consensus 7 ~~Ia~KLQcI~ 17 (27)
T 2vog_B 7 VQIARKLQCIA 17 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35799999985
No 5
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=21.91 E-value=20 Score=30.43 Aligned_cols=32 Identities=38% Similarity=0.592 Sum_probs=21.2
Q ss_pred hHHHhhhccccceeeeeeeeeecCCCceEeec
Q 047658 135 QCLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 166 (229)
Q Consensus 135 QClALgtqLrtkfKI~ykiYRifP~Gevq~LH 166 (229)
|+.-|-.-|-.++++.++-||+.|+|+.-++-
T Consensus 69 q~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~ 100 (210)
T 4ddp_A 69 QTVLLLHALANKMGLKFQRYRLVPYGNHSYLE 100 (210)
T ss_dssp HHHHHHHHHHHHHTCCCSSEEEECCGGGCEEE
T ss_pred HHHHHHHHHHHHcCCCccceeEEecCCcceee
Confidence 33333333445566777889999999877763
No 6
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=20.70 E-value=23 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.9
Q ss_pred hHHHhhhccccceeeeeeeeeecCCCceEee
Q 047658 135 QCLALGTRLRSKYKIKYQFYRVFPNGEVQYL 165 (229)
Q Consensus 135 QClALgtqLrtkfKI~ykiYRifP~Gevq~L 165 (229)
|++-|..-|-.++++.++=||+.|+|+.-++
T Consensus 43 q~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I 73 (220)
T 3vp7_A 43 QLILLLATINKNLKINLVDYELQPMGSFSKI 73 (220)
T ss_dssp HHHHHHHHHHHHTTCCCSSEEEECCGGGCEE
T ss_pred HHHHHHHHHHHHhCCCcccceEEeCCCcceE
Confidence 5544444555556666777999999998777
No 7
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=19.26 E-value=61 Score=24.69 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=23.8
Q ss_pred chhhhhhhhhHHHhhhccccceeeeeeeeeecCCCceEeec
Q 047658 126 NLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 166 (229)
Q Consensus 126 NLLylARKEQClALgtqLrtkfKI~ykiYRifP~Gevq~LH 166 (229)
+-+..|.+| |+. =||-+-|-|.+|||..++..
T Consensus 60 Dp~~IA~~E--------L~~-~kiP~iIrR~lPnG~~E~~~ 91 (95)
T 4ayb_K 60 DVISIAEEE--------FKR-GVLPITIRRRLPNGKIILLS 91 (95)
T ss_dssp CTHHHHHHH--------HHT-TCCCEEEEEECTTSCEEEEC
T ss_pred CHHHHHHHH--------HHc-CCCCEEEEEeCCCCCEEEEE
Confidence 346677776 221 27889999999999999973
No 8
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A
Probab=18.96 E-value=23 Score=32.00 Aligned_cols=62 Identities=31% Similarity=0.504 Sum_probs=38.3
Q ss_pred eEEEEecCCcceeeeccCCcchhcccCcchhhhh-hhhh---HHHhhhccccceeeeeeeeeecCCCceEeec
Q 047658 98 FYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLA-RKEQ---CLALGTRLRSKYKIKYQFYRVFPNGEVQYLH 166 (229)
Q Consensus 98 kYaITWtS~keQvFEmPTGGAAiM~~G~NLLylA-RKEQ---ClALgtqLrtkfKI~ykiYRifP~Gevq~LH 166 (229)
|=+|.| |-++.||-| =+|-+|+|-+||+ |.|. ||..+.-=...-+.-++|| +.++|.+..-+
T Consensus 149 ftv~d~----~~~~~LPk~--~v~fKGdNgkYL~~~~~~~~~~LqF~~~d~~d~~~~~qv~-~~~dG~i~vks 214 (303)
T 1jlx_A 149 FHVIDW----KSIFQFPKG--YVTFKGNNGKYLGVITINQLPCLQFGYDNLNDPKVAHQMF-VTSNGTICIKS 214 (303)
T ss_dssp EEEEES----GGGGCCCCS--SEEEECTTSCEEEEEEETTEEEEEEEECCTTCGGGCEEEE-ECTTSCEEEEE
T ss_pred EEEEch----hhhhhCcce--eEEEEcCCCcEEEEEEcCCceeeEecCCCCCCCccceEEE-EcCCceEEEEe
Confidence 448888 678899987 4778999999985 4443 5544421111112235664 55677776655
No 9
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.43 E-value=51 Score=25.57 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.4
Q ss_pred eeeeeecCCCce
Q 047658 151 YQFYRVFPNGEV 162 (229)
Q Consensus 151 ykiYRifP~Gev 162 (229)
|||||+.|.++.
T Consensus 107 ~kVYrl~~~~~~ 118 (121)
T 2dll_A 107 YKVYRIVPESGP 118 (121)
T ss_dssp EEEEEECCSSSC
T ss_pred eEEEEECCcccC
Confidence 999999998763
No 10
>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL, pattern recognition, PGRP, glycoprotein, immune response, secreted,; 1.50A {Drosophila melanogaster}
Probab=16.36 E-value=71 Score=24.76 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=42.5
Q ss_pred hhhHHHhhhccccce-------eeeeeeeeecCCCceEeeccCCCCCCcccCCCccccCcccccCCCCCCCceeeeccc-
Q 047658 133 KEQCLALGTRLRSKY-------KIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGVNYRSIGKNVSPIEHKTELK- 204 (229)
Q Consensus 133 KEQClALgtqLrtkf-------KI~ykiYRifP~Gevq~LHPkDGVfPEKVN~GR~~vg~~~r~IGkN~nP~~vKFsgk- 204 (229)
.+||.+....+..-+ .|.|.+ =|-.+|++.-.-+-+ ..|.-..|.|.+||| |-|-|.
T Consensus 42 ~~~~~~~~~~i~~~h~~~~g~~digyhf-lI~~dG~I~~gr~~~-------~~gah~~g~N~~SIG-------Ie~~G~~ 106 (169)
T 2rkq_A 42 DVTCSQHMRNLQNFQMSKQKFSDIGYHY-LIGGNGKVYEGRSPS-------QRGAFAGPNNDGSLG-------IAFIGNF 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSCSE-EECTTSCEEECSCTT-------BCCSSSGGGCTTEEE-------EEESSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCCcE-EECCCCEEEEcCCCC-------ccccccCCcCCCeEE-------EEEEcCC
Confidence 457777665554422 365554 355788877653321 135555667777776 333332
Q ss_pred ---h-hhhhhhhHHHHHHHhhhhc
Q 047658 205 ---K-FHKRWLHMEHLIKSLCSVF 224 (229)
Q Consensus 205 ---~-t~d~~~~~~~~~~~~~~~~ 224 (229)
. |=..+--+..||+.||..+
T Consensus 107 ~~~~pt~aq~~al~~L~~~l~~~~ 130 (169)
T 2rkq_A 107 EERAPNKEALDAAKELLEQAVKQA 130 (169)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC
Confidence 1 1124455677888887643
Done!