Query 047659
Match_columns 619
No_of_seqs 638 out of 3431
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 13:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.6E-69 3.4E-74 581.9 57.8 554 30-614 119-678 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.3E-68 5E-73 572.9 57.7 569 29-615 48-647 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6.1E-67 1.3E-71 549.4 66.3 527 50-594 355-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 9.8E-67 2.1E-71 547.9 63.6 495 112-606 370-895 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.6E-59 3.4E-64 492.6 53.0 476 61-591 84-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.5E-59 1.4E-63 487.9 47.8 502 34-594 89-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-33 2.4E-38 313.0 68.8 561 39-614 302-892 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-34 1.3E-38 315.1 66.3 536 36-585 333-898 (899)
9 PRK11447 cellulose synthase su 100.0 4.5E-26 9.8E-31 251.6 65.8 138 452-591 602-745 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-25 2.9E-30 247.8 68.4 566 33-612 29-730 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.3E-23 2.9E-28 196.2 37.1 442 34-532 50-499 (966)
12 PRK09782 bacteriophage N4 rece 99.9 5.3E-21 1.2E-25 201.7 60.3 536 39-613 51-697 (987)
13 PRK09782 bacteriophage N4 rece 99.9 4.6E-20 9.9E-25 194.7 60.6 522 31-592 77-709 (987)
14 KOG2002 TPR-containing nuclear 99.9 1.2E-20 2.6E-25 186.0 51.7 541 42-590 174-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 5.9E-22 1.3E-26 185.3 39.3 444 62-567 46-499 (966)
16 KOG2002 TPR-containing nuclear 99.9 2.2E-19 4.7E-24 177.2 51.2 520 48-586 146-744 (1018)
17 PRK15174 Vi polysaccharide exp 99.9 2.3E-20 5E-25 192.9 46.1 354 42-417 15-381 (656)
18 PRK15174 Vi polysaccharide exp 99.9 2E-20 4.3E-25 193.3 44.8 330 33-383 43-382 (656)
19 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-19 3E-24 188.1 49.7 431 35-517 130-571 (615)
20 PRK11788 tetratricopeptide rep 99.9 5.2E-21 1.1E-25 189.1 33.6 300 65-383 36-348 (389)
21 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-18 3E-23 180.7 51.6 428 66-552 129-571 (615)
22 PRK11788 tetratricopeptide rep 99.9 1.7E-20 3.7E-25 185.4 35.0 302 115-423 38-353 (389)
23 PRK10049 pgaA outer membrane p 99.9 3E-19 6.6E-24 188.8 45.8 369 28-417 11-422 (765)
24 PRK10049 pgaA outer membrane p 99.9 2E-18 4.3E-23 182.6 48.9 405 61-517 12-456 (765)
25 PRK14574 hmsH outer membrane p 99.9 1.3E-17 2.7E-22 172.7 52.4 329 31-381 33-395 (822)
26 PRK14574 hmsH outer membrane p 99.9 5.4E-17 1.2E-21 168.1 53.0 458 61-559 31-518 (822)
27 KOG2076 RNA polymerase III tra 99.9 5.5E-17 1.2E-21 159.4 48.8 554 28-600 133-780 (895)
28 KOG4422 Uncharacterized conser 99.8 1.2E-15 2.6E-20 137.3 43.2 424 114-555 118-593 (625)
29 KOG0495 HAT repeat protein [RN 99.8 7.7E-14 1.7E-18 132.4 56.5 540 45-607 264-865 (913)
30 KOG1915 Cell cycle control pro 99.8 1.6E-14 3.5E-19 131.8 46.4 454 45-551 86-584 (677)
31 KOG1915 Cell cycle control pro 99.8 2.8E-14 6.1E-19 130.2 46.5 460 114-586 75-584 (677)
32 KOG2076 RNA polymerase III tra 99.8 1.7E-14 3.6E-19 142.3 47.7 331 68-415 143-510 (895)
33 KOG2003 TPR repeat-containing 99.8 1.1E-16 2.4E-21 144.8 30.0 478 114-614 203-715 (840)
34 KOG0495 HAT repeat protein [RN 99.8 4.1E-13 8.9E-18 127.6 50.8 501 46-586 360-879 (913)
35 KOG4422 Uncharacterized conser 99.8 5.1E-14 1.1E-18 126.9 41.4 434 147-603 116-606 (625)
36 KOG2003 TPR repeat-containing 99.8 1.5E-14 3.2E-19 131.3 33.1 279 257-573 428-709 (840)
37 TIGR00540 hemY_coli hemY prote 99.7 6.1E-14 1.3E-18 137.8 32.7 291 71-379 91-396 (409)
38 PRK10747 putative protoheme IX 99.7 3.1E-13 6.8E-18 132.0 34.4 253 119-379 125-387 (398)
39 KOG1126 DNA-binding cell divis 99.7 7.4E-15 1.6E-19 140.2 21.9 271 43-317 330-625 (638)
40 COG2956 Predicted N-acetylgluc 99.7 2.6E-13 5.7E-18 118.1 27.9 271 43-329 46-326 (389)
41 PRK10747 putative protoheme IX 99.7 4.1E-13 8.8E-18 131.2 33.1 281 44-346 96-389 (398)
42 COG2956 Predicted N-acetylgluc 99.7 4.2E-13 9.2E-18 116.8 28.5 222 76-312 47-278 (389)
43 TIGR00540 hemY_coli hemY prote 99.7 3.1E-13 6.8E-18 132.8 31.6 290 42-346 94-398 (409)
44 KOG2047 mRNA splicing factor [ 99.7 4E-10 8.8E-15 107.5 49.6 466 61-551 99-650 (835)
45 KOG2047 mRNA splicing factor [ 99.7 3.6E-10 7.7E-15 107.9 49.1 538 10-576 82-712 (835)
46 PF13429 TPR_15: Tetratricopep 99.6 7.2E-16 1.6E-20 143.9 11.2 254 37-310 13-275 (280)
47 KOG1155 Anaphase-promoting com 99.6 3.8E-11 8.3E-16 110.0 40.8 326 145-516 162-494 (559)
48 PF13429 TPR_15: Tetratricopep 99.6 1.2E-15 2.7E-20 142.3 11.7 256 69-343 13-273 (280)
49 KOG0547 Translocase of outer m 99.6 5.9E-12 1.3E-16 115.9 32.9 429 114-604 117-578 (606)
50 KOG1155 Anaphase-promoting com 99.6 3.3E-11 7.2E-16 110.4 37.3 365 61-446 161-552 (559)
51 KOG0547 Translocase of outer m 99.6 3.4E-12 7.3E-17 117.5 30.6 396 35-481 118-565 (606)
52 KOG1126 DNA-binding cell divis 99.6 4.8E-13 1E-17 128.1 25.4 288 75-385 330-623 (638)
53 KOG3785 Uncharacterized conser 99.6 3.9E-11 8.5E-16 106.0 33.2 448 120-598 30-499 (557)
54 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.8E-16 108.5 32.6 291 76-416 96-389 (400)
55 KOG1156 N-terminal acetyltrans 99.6 1.8E-09 4E-14 103.4 45.6 453 42-551 17-510 (700)
56 PRK12370 invasion protein regu 99.6 6.9E-13 1.5E-17 135.4 23.7 150 125-276 317-469 (553)
57 KOG1173 Anaphase-promoting com 99.5 3.8E-10 8.1E-15 106.3 38.1 482 27-566 11-530 (611)
58 COG3071 HemY Uncharacterized e 99.5 1E-10 2.2E-15 105.6 32.5 284 226-515 97-388 (400)
59 KOG3785 Uncharacterized conser 99.5 1.2E-09 2.7E-14 96.7 37.0 124 433-562 374-498 (557)
60 KOG1156 N-terminal acetyltrans 99.5 1.9E-09 4.2E-14 103.3 40.9 463 75-583 18-507 (700)
61 PRK12370 invasion protein regu 99.5 6.4E-12 1.4E-16 128.4 25.7 257 78-382 275-535 (553)
62 PF12569 NARP1: NMDA receptor- 99.5 1.5E-09 3.3E-14 107.0 38.0 291 38-346 10-333 (517)
63 KOG1173 Anaphase-promoting com 99.5 9.6E-11 2.1E-15 110.2 27.2 277 31-326 243-530 (611)
64 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.8E-16 111.2 22.9 193 65-274 32-229 (234)
65 TIGR02521 type_IV_pilW type IV 99.5 2E-11 4.4E-16 111.4 22.5 196 31-241 30-231 (234)
66 COG3063 PilF Tfp pilus assembl 99.5 6.8E-11 1.5E-15 98.6 22.7 187 68-271 39-230 (250)
67 KOG4318 Bicoid mRNA stability 99.5 9.7E-10 2.1E-14 108.8 34.4 514 31-590 24-597 (1088)
68 KOG1129 TPR repeat-containing 99.4 1.1E-11 2.4E-16 108.2 17.9 227 68-312 227-458 (478)
69 KOG2376 Signal recognition par 99.4 1.2E-08 2.7E-13 96.9 38.5 450 33-512 13-515 (652)
70 PF12569 NARP1: NMDA receptor- 99.4 1.3E-08 2.9E-13 100.4 40.5 258 70-348 10-292 (517)
71 KOG4318 Bicoid mRNA stability 99.4 2.5E-11 5.5E-16 119.7 20.4 269 236-538 13-286 (1088)
72 KOG1129 TPR repeat-containing 99.4 2.7E-11 5.8E-16 105.8 17.5 225 117-346 228-457 (478)
73 PRK11189 lipoprotein NlpI; Pro 99.4 1.5E-10 3.2E-15 108.2 23.5 217 42-278 36-266 (296)
74 KOG4162 Predicted calmodulin-b 99.4 1.8E-08 4E-13 98.8 36.8 130 390-552 652-783 (799)
75 COG3063 PilF Tfp pilus assembl 99.4 8.8E-10 1.9E-14 92.1 23.6 196 114-312 37-236 (250)
76 KOG2376 Signal recognition par 99.4 1.2E-07 2.6E-12 90.3 40.4 142 468-612 356-511 (652)
77 PF13041 PPR_2: PPR repeat fam 99.3 3.4E-12 7.3E-17 82.8 6.9 50 556-605 1-50 (50)
78 KOG1174 Anaphase-promoting com 99.3 1.4E-07 3E-12 85.8 37.6 379 31-417 96-500 (564)
79 KOG4162 Predicted calmodulin-b 99.3 4.4E-08 9.6E-13 96.2 34.8 129 455-587 652-783 (799)
80 KOG4340 Uncharacterized conser 99.3 1.6E-08 3.4E-13 87.8 27.9 199 31-245 9-210 (459)
81 KOG3617 WD40 and TPR repeat-co 99.3 1.5E-07 3.3E-12 92.8 37.9 211 42-275 738-994 (1416)
82 KOG0548 Molecular co-chaperone 99.3 4.8E-08 1E-12 92.1 32.6 433 35-535 5-471 (539)
83 PRK11189 lipoprotein NlpI; Pro 99.3 7.9E-10 1.7E-14 103.4 21.2 193 34-244 66-267 (296)
84 KOG1127 TPR repeat-containing 99.3 1.1E-07 2.5E-12 95.8 36.2 160 112-276 492-658 (1238)
85 cd05804 StaR_like StaR_like; a 99.3 3.5E-08 7.6E-13 96.3 33.0 202 61-276 3-214 (355)
86 KOG0985 Vesicle coat protein c 99.2 2.7E-06 5.9E-11 86.2 44.2 86 452-545 1103-1188(1666)
87 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.3E-16 78.4 6.6 49 486-534 1-49 (50)
88 KOG1840 Kinesin light chain [C 99.2 2.4E-09 5.3E-14 104.2 21.0 247 61-345 196-477 (508)
89 KOG1840 Kinesin light chain [C 99.2 9.9E-09 2.1E-13 100.0 24.1 229 151-379 203-476 (508)
90 KOG1125 TPR repeat-containing 99.2 2.1E-09 4.5E-14 101.9 18.7 91 37-141 290-382 (579)
91 KOG0624 dsRNA-activated protei 99.2 6E-08 1.3E-12 86.0 26.3 312 62-417 36-370 (504)
92 cd05804 StaR_like StaR_like; a 99.1 1.4E-07 3E-12 92.0 30.8 293 38-346 12-335 (355)
93 KOG0624 dsRNA-activated protei 99.1 8.3E-08 1.8E-12 85.1 25.4 309 34-382 40-370 (504)
94 KOG3617 WD40 and TPR repeat-co 99.1 6.9E-06 1.5E-10 81.6 39.9 287 65-379 801-1171(1416)
95 KOG1127 TPR repeat-containing 99.1 2.3E-06 5E-11 86.7 37.5 532 45-586 471-1103(1238)
96 KOG0548 Molecular co-chaperone 99.1 4.7E-07 1E-11 85.6 30.7 434 119-570 9-471 (539)
97 KOG2053 Mitochondrial inherita 99.1 7.2E-06 1.6E-10 82.5 40.1 222 42-279 19-257 (932)
98 PLN02789 farnesyltranstransfer 99.1 8.5E-08 1.8E-12 89.4 24.7 201 43-260 48-267 (320)
99 PLN02789 farnesyltranstransfer 99.1 1.9E-07 4.2E-12 87.1 25.9 220 43-295 31-267 (320)
100 KOG3616 Selective LIM binding 99.1 2.7E-06 5.9E-11 83.3 33.7 259 114-414 617-876 (1636)
101 KOG1125 TPR repeat-containing 99.1 3.3E-08 7.1E-13 94.0 20.3 225 68-310 289-525 (579)
102 KOG4340 Uncharacterized conser 99.0 1.4E-06 2.9E-11 76.0 28.3 289 114-413 12-335 (459)
103 KOG3616 Selective LIM binding 99.0 2.9E-06 6.2E-11 83.1 33.5 103 158-271 743-847 (1636)
104 TIGR03302 OM_YfiO outer membra 99.0 2.7E-08 5.8E-13 90.5 18.5 190 27-242 28-232 (235)
105 KOG1174 Anaphase-promoting com 99.0 2.9E-05 6.2E-10 71.3 44.2 389 114-517 99-500 (564)
106 KOG0985 Vesicle coat protein c 98.9 0.0001 2.2E-09 75.3 43.5 302 29-365 981-1325(1666)
107 KOG1070 rRNA processing protei 98.9 6.8E-07 1.5E-11 93.6 25.6 245 47-304 1440-1692(1710)
108 KOG2053 Mitochondrial inherita 98.9 0.00011 2.3E-09 74.4 43.8 503 76-608 21-594 (932)
109 TIGR03302 OM_YfiO outer membra 98.9 1.1E-07 2.4E-12 86.5 18.0 188 61-277 30-232 (235)
110 PRK10370 formate-dependent nit 98.9 4E-08 8.7E-13 85.2 14.0 122 77-214 52-179 (198)
111 COG5010 TadD Flp pilus assembl 98.9 1.5E-07 3.2E-12 80.9 16.7 174 50-240 52-229 (257)
112 PRK04841 transcriptional regul 98.9 9.7E-06 2.1E-10 89.9 36.2 366 39-417 348-760 (903)
113 PRK15179 Vi polysaccharide bio 98.9 1.5E-07 3.3E-12 96.7 20.0 144 61-220 83-229 (694)
114 PRK15359 type III secretion sy 98.9 2.9E-08 6.4E-13 81.4 11.8 110 53-178 14-123 (144)
115 PRK15359 type III secretion sy 98.9 6E-08 1.3E-12 79.5 13.4 97 31-141 23-121 (144)
116 PRK04841 transcriptional regul 98.9 1.3E-05 2.9E-10 88.9 35.5 340 38-383 380-761 (903)
117 PRK15179 Vi polysaccharide bio 98.8 1.4E-06 3E-11 89.8 24.8 198 28-254 24-228 (694)
118 PRK10370 formate-dependent nit 98.8 4.1E-07 8.8E-12 79.0 17.4 116 125-242 52-173 (198)
119 COG4783 Putative Zn-dependent 98.8 3.4E-07 7.3E-12 85.8 17.6 149 61-242 303-454 (484)
120 PF04733 Coatomer_E: Coatomer 98.8 1E-07 2.2E-12 87.8 13.6 150 155-311 110-264 (290)
121 KOG1914 mRNA cleavage and poly 98.8 0.0002 4.4E-09 68.3 39.9 454 88-575 10-527 (656)
122 PRK14720 transcript cleavage f 98.8 2.6E-06 5.6E-11 88.7 23.7 232 31-294 30-268 (906)
123 COG4783 Putative Zn-dependent 98.8 3E-06 6.6E-11 79.6 21.7 144 114-277 308-454 (484)
124 PF04733 Coatomer_E: Coatomer 98.8 4.1E-07 8.8E-12 83.8 16.1 253 257-551 10-264 (290)
125 COG5010 TadD Flp pilus assembl 98.8 1.4E-06 2.9E-11 75.2 17.9 154 116-272 70-226 (257)
126 KOG1070 rRNA processing protei 98.7 1.1E-05 2.4E-10 84.9 26.6 221 181-406 1461-1689(1710)
127 KOG3060 Uncharacterized conser 98.7 1.8E-06 4E-11 73.6 17.3 159 34-207 54-220 (289)
128 KOG1914 mRNA cleavage and poly 98.7 0.00032 7E-09 67.0 41.1 447 136-607 10-524 (656)
129 PRK14720 transcript cleavage f 98.7 9.1E-06 2E-10 84.7 24.9 233 61-329 28-268 (906)
130 TIGR02552 LcrH_SycD type III s 98.7 6.3E-07 1.4E-11 73.4 12.9 103 61-178 14-116 (135)
131 KOG1128 Uncharacterized conser 98.6 1.6E-06 3.4E-11 85.1 16.8 238 62-329 396-634 (777)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.7E-06 3.8E-11 82.3 15.5 127 31-173 168-294 (395)
133 PF12854 PPR_1: PPR repeat 98.6 8.4E-08 1.8E-12 55.5 4.1 32 553-584 2-33 (34)
134 KOG1128 Uncharacterized conser 98.6 7.4E-06 1.6E-10 80.6 19.4 295 25-346 315-615 (777)
135 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.3E-12 55.1 3.8 32 518-549 2-33 (34)
136 TIGR02552 LcrH_SycD type III s 98.5 2.4E-06 5.2E-11 69.9 13.4 109 85-208 4-115 (135)
137 KOG3060 Uncharacterized conser 98.5 4.5E-05 9.8E-10 65.4 20.3 161 31-206 9-182 (289)
138 KOG3081 Vesicle coat complex C 98.5 3.5E-05 7.5E-10 66.6 19.0 120 222-346 146-270 (299)
139 PRK10866 outer membrane biogen 98.5 1.6E-05 3.4E-10 71.5 17.9 194 21-240 21-239 (243)
140 KOG3081 Vesicle coat complex C 98.4 0.001 2.2E-08 57.8 25.3 150 256-416 116-270 (299)
141 PF09976 TPR_21: Tetratricopep 98.4 1.3E-05 2.9E-10 66.1 13.7 117 76-204 23-144 (145)
142 PRK15363 pathogenicity island 98.4 3.2E-06 7E-11 67.8 9.4 101 27-141 26-132 (157)
143 PRK15363 pathogenicity island 98.4 4.6E-06 9.9E-11 67.0 10.0 100 62-176 33-132 (157)
144 PF09976 TPR_21: Tetratricopep 98.3 1.4E-05 3E-10 66.0 12.8 125 35-173 15-144 (145)
145 COG4235 Cytochrome c biogenesi 98.3 2.8E-05 6.1E-10 69.2 14.7 112 61-187 153-269 (287)
146 PLN03088 SGT1, suppressor of 98.3 1.1E-05 2.4E-10 77.4 12.8 92 37-142 7-100 (356)
147 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.4E-05 3.1E-10 63.7 11.6 102 66-178 4-107 (119)
148 KOG0553 TPR repeat-containing 98.3 1E-05 2.2E-10 71.4 10.9 92 35-140 84-177 (304)
149 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.8E-05 4E-10 63.0 11.7 102 32-144 2-108 (119)
150 cd00189 TPR Tetratricopeptide 98.2 1.2E-05 2.5E-10 61.1 10.0 96 67-177 3-98 (100)
151 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.9E-05 1.1E-09 72.5 15.1 123 151-275 173-295 (395)
152 PF13525 YfiO: Outer membrane 98.2 4.4E-05 9.4E-10 67.0 13.8 72 28-99 1-77 (203)
153 PRK10866 outer membrane biogen 98.2 0.00019 4.1E-09 64.6 17.6 188 62-276 30-240 (243)
154 PLN03088 SGT1, suppressor of 98.2 3.9E-05 8.3E-10 73.7 13.6 96 68-178 6-101 (356)
155 PRK02603 photosystem I assembl 98.1 7.5E-05 1.6E-09 63.8 13.7 97 61-169 32-128 (172)
156 PF12895 Apc3: Anaphase-promot 98.1 9.3E-06 2E-10 59.6 6.7 82 77-172 2-83 (84)
157 PF07079 DUF1347: Protein of u 98.1 0.011 2.3E-07 55.8 44.8 447 120-598 14-530 (549)
158 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 47.8 4.5 33 560-592 2-34 (35)
159 PF13432 TPR_16: Tetratricopep 98.0 1.3E-05 2.9E-10 55.4 5.7 58 70-141 3-60 (65)
160 PF14938 SNAP: Soluble NSF att 98.0 0.00022 4.7E-09 66.4 15.3 181 47-277 30-225 (282)
161 KOG0550 Molecular chaperone (D 98.0 0.0014 3E-08 60.7 19.6 276 33-347 50-350 (486)
162 COG3898 Uncharacterized membra 98.0 0.012 2.6E-07 54.3 29.9 306 48-383 69-393 (531)
163 PF13432 TPR_16: Tetratricopep 98.0 1.1E-05 2.4E-10 55.8 5.0 60 38-97 3-64 (65)
164 COG4105 ComL DNA uptake lipopr 98.0 0.0014 3E-08 57.3 18.5 85 16-100 18-107 (254)
165 PF12895 Apc3: Anaphase-promot 98.0 6.9E-06 1.5E-10 60.3 4.0 80 44-138 1-84 (84)
166 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 46.8 4.5 33 559-591 2-34 (34)
167 cd00189 TPR Tetratricopeptide 98.0 3.6E-05 7.9E-10 58.4 8.2 94 35-142 3-98 (100)
168 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.5E-10 46.8 4.5 33 490-522 2-34 (35)
169 CHL00033 ycf3 photosystem I as 97.9 0.00019 4.1E-09 61.1 12.4 83 64-158 35-117 (168)
170 PF14559 TPR_19: Tetratricopep 97.9 2.2E-05 4.8E-10 54.9 5.5 55 75-143 2-56 (68)
171 PF12688 TPR_5: Tetratrico pep 97.9 0.00012 2.7E-09 56.9 9.8 60 37-96 6-70 (120)
172 PF13414 TPR_11: TPR repeat; P 97.9 2.6E-05 5.6E-10 54.8 5.7 66 63-142 2-68 (69)
173 KOG0553 TPR repeat-containing 97.9 0.00012 2.6E-09 64.8 10.7 90 74-178 91-180 (304)
174 COG4235 Cytochrome c biogenesi 97.9 0.00058 1.2E-08 61.0 14.8 99 109-208 153-257 (287)
175 CHL00033 ycf3 photosystem I as 97.9 0.0003 6.6E-09 59.8 13.0 89 114-202 37-137 (168)
176 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5.1E-10 45.7 4.3 32 490-521 3-34 (34)
177 PF13512 TPR_18: Tetratricopep 97.9 0.00019 4E-09 56.8 10.1 74 27-100 5-83 (142)
178 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.026 5.7E-07 53.2 36.5 155 452-612 396-554 (660)
179 PRK10803 tol-pal system protei 97.8 0.00051 1.1E-08 62.3 13.6 94 75-179 154-249 (263)
180 PRK02603 photosystem I assembl 97.8 0.00085 1.8E-08 57.3 14.5 86 114-199 37-127 (172)
181 PRK15331 chaperone protein Sic 97.8 0.00021 4.5E-09 57.9 9.8 92 35-140 40-133 (165)
182 PF14559 TPR_19: Tetratricopep 97.8 2.1E-05 4.5E-10 55.1 3.7 58 42-99 1-60 (68)
183 PF10037 MRP-S27: Mitochondria 97.8 0.00031 6.6E-09 67.5 12.6 122 485-606 63-186 (429)
184 PF08579 RPM2: Mitochondrial r 97.8 0.00035 7.5E-09 52.1 9.9 77 529-605 31-116 (120)
185 PF12688 TPR_5: Tetratrico pep 97.8 0.00093 2E-08 52.0 13.0 99 65-174 2-102 (120)
186 PF14938 SNAP: Soluble NSF att 97.8 0.0019 4.1E-08 60.2 17.4 59 33-92 36-102 (282)
187 PF05843 Suf: Suppressor of fo 97.8 0.00045 9.6E-09 64.0 12.7 146 454-604 2-151 (280)
188 COG4700 Uncharacterized protei 97.8 0.01 2.2E-07 48.7 18.3 117 115-233 92-213 (251)
189 PF10037 MRP-S27: Mitochondria 97.8 0.00061 1.3E-08 65.5 13.5 76 458-533 108-183 (429)
190 COG4700 Uncharacterized protei 97.7 0.0014 3.1E-08 53.6 13.2 157 37-206 61-221 (251)
191 KOG2114 Vacuolar assembly/sort 97.7 0.047 1E-06 55.8 26.2 207 2-239 306-516 (933)
192 PF13525 YfiO: Outer membrane 97.7 0.0012 2.6E-08 58.0 13.7 179 63-268 4-198 (203)
193 PRK15331 chaperone protein Sic 97.7 0.00062 1.4E-08 55.2 10.7 100 62-176 35-134 (165)
194 PRK10803 tol-pal system protei 97.7 0.00046 9.9E-09 62.6 11.1 100 34-144 145-249 (263)
195 PRK10153 DNA-binding transcrip 97.7 0.0016 3.4E-08 65.6 15.6 134 61-208 334-483 (517)
196 PF13414 TPR_11: TPR repeat; P 97.7 0.00011 2.3E-09 51.6 5.3 64 114-178 5-69 (69)
197 PF08579 RPM2: Mitochondrial r 97.6 0.001 2.2E-08 49.7 10.2 76 325-400 32-116 (120)
198 KOG1130 Predicted G-alpha GTPa 97.6 0.0013 2.9E-08 60.7 13.0 269 34-311 19-343 (639)
199 COG3898 Uncharacterized membra 97.6 0.062 1.3E-06 49.9 31.6 285 124-421 96-396 (531)
200 KOG2041 WD40 repeat protein [G 97.6 0.096 2.1E-06 52.4 25.4 257 47-346 678-951 (1189)
201 PF01535 PPR: PPR repeat; Int 97.6 0.0001 2.2E-09 41.9 3.5 29 560-588 2-30 (31)
202 PF05843 Suf: Suppressor of fo 97.6 0.00062 1.3E-08 63.1 10.3 125 67-206 4-135 (280)
203 KOG2796 Uncharacterized conser 97.5 0.016 3.5E-07 50.5 17.5 59 115-173 180-238 (366)
204 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 41.2 3.7 29 250-278 2-30 (31)
205 KOG0550 Molecular chaperone (D 97.5 0.024 5.1E-07 53.0 19.5 239 34-277 85-350 (486)
206 PF13371 TPR_9: Tetratricopept 97.5 0.00061 1.3E-08 48.4 7.7 60 71-144 2-61 (73)
207 COG1729 Uncharacterized protei 97.5 0.002 4.4E-08 56.9 11.9 103 67-180 144-248 (262)
208 PRK10153 DNA-binding transcrip 97.4 0.0098 2.1E-07 60.0 17.8 153 448-606 332-499 (517)
209 KOG0543 FKBP-type peptidyl-pro 97.4 0.003 6.6E-08 58.8 12.5 135 69-207 213-355 (397)
210 KOG1538 Uncharacterized conser 97.4 0.027 5.9E-07 55.5 19.0 228 37-346 561-801 (1081)
211 PF07079 DUF1347: Protein of u 97.4 0.13 2.9E-06 48.9 37.7 454 41-564 15-531 (549)
212 COG4785 NlpI Lipoprotein NlpI, 97.4 0.041 8.8E-07 46.6 17.4 186 71-277 72-266 (297)
213 KOG2041 WD40 repeat protein [G 97.4 0.21 4.5E-06 50.2 27.6 204 144-379 689-904 (1189)
214 PF06239 ECSIT: Evolutionarily 97.3 0.006 1.3E-07 51.9 12.2 106 245-369 44-154 (228)
215 PF08631 SPO22: Meiosis protei 97.3 0.14 3.1E-06 47.5 25.3 127 74-207 3-150 (278)
216 COG4105 ComL DNA uptake lipopr 97.3 0.049 1.1E-06 47.9 17.7 187 63-277 33-233 (254)
217 PF13512 TPR_18: Tetratricopep 97.3 0.004 8.6E-08 49.5 9.9 85 62-157 8-92 (142)
218 PF13371 TPR_9: Tetratricopept 97.3 0.001 2.2E-08 47.2 6.1 59 119-178 2-60 (73)
219 PF06239 ECSIT: Evolutionarily 97.2 0.012 2.6E-07 50.2 12.3 103 452-573 46-153 (228)
220 COG3118 Thioredoxin domain-con 97.1 0.037 8E-07 49.6 15.4 122 40-176 142-265 (304)
221 COG1729 Uncharacterized protei 97.1 0.007 1.5E-07 53.6 11.0 100 34-144 143-247 (262)
222 COG3118 Thioredoxin domain-con 97.1 0.068 1.5E-06 48.0 16.9 153 64-231 134-290 (304)
223 PF03704 BTAD: Bacterial trans 97.1 0.016 3.6E-07 47.8 12.7 60 114-174 64-123 (146)
224 KOG1258 mRNA processing protei 97.1 0.38 8.2E-06 47.8 35.3 421 52-537 32-489 (577)
225 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.7E-08 41.0 4.2 36 64-99 1-36 (44)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0055 1.2E-07 58.6 10.3 69 61-141 72-141 (453)
227 KOG2280 Vacuolar assembly/sort 97.0 0.53 1.1E-05 48.0 24.3 337 34-413 439-795 (829)
228 PRK11906 transcriptional regul 97.0 0.031 6.8E-07 53.7 14.7 117 47-178 273-403 (458)
229 KOG2796 Uncharacterized conser 97.0 0.22 4.9E-06 43.7 21.6 130 217-347 181-315 (366)
230 PF04840 Vps16_C: Vps16, C-ter 96.9 0.39 8.4E-06 45.2 29.3 128 455-608 179-306 (319)
231 KOG4555 TPR repeat-containing 96.9 0.033 7.3E-07 42.8 11.2 53 41-93 52-106 (175)
232 PRK11906 transcriptional regul 96.9 0.16 3.4E-06 49.1 18.3 142 79-238 273-432 (458)
233 COG4785 NlpI Lipoprotein NlpI, 96.8 0.084 1.8E-06 44.8 14.3 179 44-243 77-267 (297)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.027 5.9E-07 54.0 13.0 62 114-176 77-141 (453)
235 KOG0543 FKBP-type peptidyl-pro 96.8 0.012 2.6E-07 55.0 10.1 123 39-176 215-355 (397)
236 PF03704 BTAD: Bacterial trans 96.7 0.012 2.6E-07 48.6 9.0 96 42-151 16-140 (146)
237 KOG1130 Predicted G-alpha GTPa 96.7 0.02 4.3E-07 53.3 10.7 282 119-416 24-343 (639)
238 KOG1585 Protein required for f 96.7 0.18 3.9E-06 43.8 15.6 30 68-97 35-64 (308)
239 KOG1585 Protein required for f 96.7 0.22 4.8E-06 43.3 15.7 27 114-140 93-119 (308)
240 KOG4555 TPR repeat-containing 96.6 0.079 1.7E-06 40.8 11.7 95 70-178 49-146 (175)
241 PF13424 TPR_12: Tetratricopep 96.6 0.0086 1.9E-07 43.0 6.7 69 65-140 6-74 (78)
242 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.66 1.4E-05 44.3 33.7 114 450-569 430-546 (660)
243 PF04840 Vps16_C: Vps16, C-ter 96.5 0.73 1.6E-05 43.5 28.4 111 249-379 178-288 (319)
244 PF13428 TPR_14: Tetratricopep 96.5 0.0064 1.4E-07 37.7 4.5 41 114-155 3-43 (44)
245 PF13281 DUF4071: Domain of un 96.5 0.54 1.2E-05 44.8 18.7 79 146-224 140-228 (374)
246 PF12921 ATP13: Mitochondrial 96.4 0.087 1.9E-06 41.6 11.5 102 487-608 1-103 (126)
247 PF13281 DUF4071: Domain of un 96.4 0.28 6.1E-06 46.6 16.4 100 28-141 137-255 (374)
248 PF09613 HrpB1_HrpK: Bacterial 96.3 0.11 2.3E-06 42.4 11.6 58 38-95 16-75 (160)
249 KOG2114 Vacuolar assembly/sort 96.3 1.7 3.8E-05 45.1 24.4 46 529-578 711-756 (933)
250 PF10300 DUF3808: Protein of u 96.3 0.23 5E-06 49.9 16.3 145 53-207 178-334 (468)
251 PF13424 TPR_12: Tetratricopep 96.2 0.009 1.9E-07 42.9 4.7 62 114-175 7-74 (78)
252 PF04184 ST7: ST7 protein; In 96.2 0.33 7.2E-06 47.1 16.0 55 151-205 263-322 (539)
253 PF04053 Coatomer_WDAD: Coatom 96.1 0.12 2.5E-06 51.1 13.1 166 30-239 261-428 (443)
254 PF12921 ATP13: Mitochondrial 96.1 0.12 2.6E-06 40.8 10.7 98 452-569 1-99 (126)
255 KOG1941 Acetylcholine receptor 96.1 0.48 1E-05 43.8 15.5 229 39-275 13-273 (518)
256 PF08631 SPO22: Meiosis protei 96.1 1.2 2.6E-05 41.4 23.8 163 43-213 4-192 (278)
257 PF10300 DUF3808: Protein of u 96.1 0.36 7.8E-06 48.5 16.5 162 32-207 188-376 (468)
258 COG4649 Uncharacterized protei 96.0 0.39 8.4E-06 39.4 12.9 121 74-206 68-195 (221)
259 PF09613 HrpB1_HrpK: Bacterial 96.0 0.34 7.3E-06 39.6 12.7 56 122-178 20-75 (160)
260 KOG1538 Uncharacterized conser 95.8 0.65 1.4E-05 46.4 16.3 56 212-276 746-801 (1081)
261 PF13431 TPR_17: Tetratricopep 95.8 0.012 2.6E-07 33.8 2.9 33 87-133 2-34 (34)
262 KOG3941 Intermediate in Toll s 95.8 0.082 1.8E-06 46.8 9.1 107 485-610 64-175 (406)
263 PF04053 Coatomer_WDAD: Coatom 95.7 0.21 4.6E-06 49.3 12.9 161 119-309 268-428 (443)
264 KOG1941 Acetylcholine receptor 95.7 0.67 1.5E-05 42.9 14.6 158 68-236 10-185 (518)
265 COG4649 Uncharacterized protei 95.6 1 2.2E-05 37.0 14.3 120 122-241 68-195 (221)
266 KOG4234 TPR repeat-containing 95.6 0.54 1.2E-05 39.6 12.6 99 70-178 101-199 (271)
267 smart00299 CLH Clathrin heavy 95.6 1 2.2E-05 36.7 15.0 19 153-171 75-93 (140)
268 KOG2610 Uncharacterized conser 95.6 0.24 5.1E-06 45.2 11.4 183 44-240 79-274 (491)
269 COG3629 DnrI DNA-binding trans 95.4 0.088 1.9E-06 47.7 8.3 75 68-156 157-236 (280)
270 TIGR02561 HrpB1_HrpK type III 95.4 0.48 1E-05 38.0 11.3 102 37-139 15-120 (153)
271 PF04184 ST7: ST7 protein; In 95.1 2.5 5.4E-05 41.4 17.0 149 153-312 174-324 (539)
272 KOG2610 Uncharacterized conser 95.0 1.9 4.2E-05 39.6 15.3 152 121-275 112-274 (491)
273 PF09205 DUF1955: Domain of un 94.9 1.4 3E-05 34.4 12.4 68 522-590 85-152 (161)
274 PF07719 TPR_2: Tetratricopept 94.9 0.043 9.4E-07 31.5 3.4 32 65-96 2-33 (34)
275 PF04910 Tcf25: Transcriptiona 94.8 2.2 4.8E-05 41.2 16.5 137 34-174 12-166 (360)
276 smart00299 CLH Clathrin heavy 94.8 1.8 4E-05 35.2 14.9 86 181-274 10-95 (140)
277 KOG2280 Vacuolar assembly/sort 94.6 6.5 0.00014 40.6 34.7 108 455-581 686-793 (829)
278 PF00515 TPR_1: Tetratricopept 94.6 0.053 1.1E-06 31.2 3.2 32 65-96 2-33 (34)
279 KOG3941 Intermediate in Toll s 94.5 0.38 8.2E-06 42.8 9.4 105 246-369 65-174 (406)
280 COG2976 Uncharacterized protei 94.5 1.5 3.3E-05 37.0 12.3 93 116-208 93-189 (207)
281 KOG1920 IkappaB kinase complex 94.4 9.6 0.00021 41.7 23.9 28 249-276 791-820 (1265)
282 TIGR02561 HrpB1_HrpK type III 94.4 1.5 3.3E-05 35.2 11.6 72 117-189 15-87 (153)
283 COG3629 DnrI DNA-binding trans 94.2 0.68 1.5E-05 42.1 10.7 77 525-602 155-236 (280)
284 KOG2396 HAT (Half-A-TPR) repea 94.2 6.2 0.00013 38.7 40.3 98 485-586 456-558 (568)
285 KOG1258 mRNA processing protei 94.2 7.1 0.00015 39.3 34.4 395 46-502 59-489 (577)
286 PF13431 TPR_17: Tetratricopep 94.1 0.06 1.3E-06 30.9 2.7 32 135-167 2-33 (34)
287 COG0457 NrfG FOG: TPR repeat [ 94.1 4.1 8.9E-05 36.5 24.5 163 114-276 61-230 (291)
288 PF13174 TPR_6: Tetratricopept 94.1 0.063 1.4E-06 30.5 2.8 31 66-96 2-32 (33)
289 PF13176 TPR_7: Tetratricopept 93.7 0.13 2.9E-06 30.0 3.7 27 66-92 1-27 (36)
290 PF07035 Mic1: Colon cancer-as 93.6 3.6 7.9E-05 34.2 15.4 135 269-417 15-149 (167)
291 PRK09687 putative lyase; Provi 93.6 6 0.00013 36.7 25.0 133 180-328 144-277 (280)
292 KOG2066 Vacuolar assembly/sort 93.4 11 0.00024 39.2 24.9 171 69-275 361-532 (846)
293 COG2976 Uncharacterized protei 93.2 4.6 0.0001 34.2 13.1 122 43-178 64-190 (207)
294 PF09205 DUF1955: Domain of un 93.2 3.3 7.1E-05 32.5 14.4 63 251-314 89-151 (161)
295 KOG0890 Protein kinase of the 93.1 25 0.00053 42.0 24.4 63 317-382 1669-1731(2382)
296 PF13170 DUF4003: Protein of u 93.1 7.7 0.00017 36.2 18.8 131 264-396 78-225 (297)
297 PF13176 TPR_7: Tetratricopept 92.8 0.21 4.5E-06 29.2 3.6 25 115-139 2-26 (36)
298 PF13170 DUF4003: Protein of u 92.3 9.8 0.00021 35.6 19.9 26 505-530 199-224 (297)
299 KOG4648 Uncharacterized conser 92.2 0.41 9E-06 43.8 6.2 90 117-207 102-194 (536)
300 PF02284 COX5A: Cytochrome c o 92.2 2.6 5.6E-05 31.3 9.0 61 541-602 28-88 (108)
301 KOG4234 TPR repeat-containing 92.1 1.1 2.4E-05 37.8 8.0 96 35-144 98-200 (271)
302 PF10602 RPN7: 26S proteasome 92.1 2.8 6E-05 35.7 10.9 117 490-608 38-171 (177)
303 KOG4648 Uncharacterized conser 92.1 1.1 2.4E-05 41.1 8.7 94 70-178 103-196 (536)
304 PF13181 TPR_8: Tetratricopept 91.8 0.33 7.1E-06 27.7 3.6 31 65-95 2-32 (34)
305 KOG0545 Aryl-hydrocarbon recep 91.7 3.3 7.1E-05 36.4 10.6 106 68-178 182-295 (329)
306 PF00515 TPR_1: Tetratricopept 91.5 0.34 7.3E-06 27.7 3.4 30 114-143 3-32 (34)
307 PF06552 TOM20_plant: Plant sp 91.5 0.85 1.8E-05 38.0 6.7 92 50-157 9-123 (186)
308 KOG0276 Vesicle coat complex C 91.3 4 8.7E-05 40.9 12.0 151 122-308 596-746 (794)
309 PF10602 RPN7: 26S proteasome 91.3 2.3 4.9E-05 36.2 9.5 63 249-311 37-101 (177)
310 KOG4642 Chaperone-dependent E3 91.1 3.3 7.2E-05 36.2 10.1 109 34-156 12-126 (284)
311 PRK11619 lytic murein transgly 91.0 24 0.00051 37.4 31.2 79 229-310 295-373 (644)
312 PF04097 Nic96: Nup93/Nic96; 90.8 24 0.00053 37.2 21.1 63 31-93 110-181 (613)
313 PF07719 TPR_2: Tetratricopept 90.8 0.54 1.2E-05 26.7 3.8 26 150-175 4-29 (34)
314 PF07035 Mic1: Colon cancer-as 90.7 8.8 0.00019 32.0 14.7 132 236-381 17-148 (167)
315 KOG1586 Protein required for f 90.7 11 0.00024 33.1 17.9 24 222-245 163-186 (288)
316 KOG1920 IkappaB kinase complex 90.3 33 0.00071 37.9 27.1 137 251-415 911-1053(1265)
317 KOG2422 Uncharacterized conser 90.3 17 0.00037 36.5 15.2 163 45-207 251-448 (665)
318 PF08424 NRDE-2: NRDE-2, neces 90.1 18 0.00038 34.5 17.7 104 56-174 10-129 (321)
319 KOG1550 Extracellular protein 89.9 27 0.00058 36.3 25.2 179 80-280 228-429 (552)
320 PF04910 Tcf25: Transcriptiona 89.9 20 0.00043 34.8 17.2 149 79-241 9-167 (360)
321 PF14561 TPR_20: Tetratricopep 89.9 4 8.6E-05 30.0 8.5 65 84-162 8-73 (90)
322 COG2909 MalT ATP-dependent tra 89.8 31 0.00067 36.8 24.9 51 190-240 470-524 (894)
323 PRK09687 putative lyase; Provi 89.7 17 0.00037 33.8 28.7 231 146-398 36-277 (280)
324 KOG0276 Vesicle coat complex C 89.5 2.8 6.1E-05 41.9 9.4 101 122-239 647-747 (794)
325 PF06552 TOM20_plant: Plant sp 89.5 5.3 0.00012 33.5 9.7 66 80-160 7-82 (186)
326 COG0457 NrfG FOG: TPR repeat [ 89.3 15 0.00033 32.6 28.3 165 181-346 62-230 (291)
327 PF04097 Nic96: Nup93/Nic96; 89.2 32 0.0007 36.3 22.6 43 183-226 116-158 (613)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 7.2 0.00016 28.7 9.9 62 540-602 24-85 (103)
329 KOG2034 Vacuolar sorting prote 89.1 35 0.00076 36.4 24.5 61 31-92 357-417 (911)
330 PF07721 TPR_4: Tetratricopept 88.5 0.55 1.2E-05 24.9 2.4 24 65-88 2-25 (26)
331 PF13174 TPR_6: Tetratricopept 88.3 0.67 1.5E-05 26.1 2.9 26 116-141 4-29 (33)
332 COG2909 MalT ATP-dependent tra 88.2 40 0.00087 36.1 25.5 193 223-418 425-648 (894)
333 KOG4507 Uncharacterized conser 88.1 3.6 7.8E-05 41.0 9.1 131 34-178 573-707 (886)
334 KOG1308 Hsp70-interacting prot 87.9 0.68 1.5E-05 42.6 3.9 93 39-145 121-215 (377)
335 COG1747 Uncharacterized N-term 87.7 31 0.00068 34.3 21.5 176 61-257 63-248 (711)
336 PF10345 Cohesin_load: Cohesin 87.5 42 0.00091 35.6 41.0 60 526-586 538-605 (608)
337 KOG1586 Protein required for f 87.3 20 0.00043 31.6 20.7 25 256-280 162-186 (288)
338 KOG0376 Serine-threonine phosp 87.1 1.6 3.5E-05 42.3 6.1 95 33-141 5-101 (476)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 87.1 4.6 0.0001 29.6 6.9 45 506-550 25-69 (103)
340 KOG4570 Uncharacterized conser 86.4 6.6 0.00014 36.0 9.0 98 452-551 63-163 (418)
341 COG3947 Response regulator con 86.4 5.2 0.00011 36.2 8.3 60 114-174 281-340 (361)
342 KOG0530 Protein farnesyltransf 86.2 25 0.00054 31.6 18.4 119 45-178 56-178 (318)
343 KOG1464 COP9 signalosome, subu 86.0 26 0.00055 31.5 19.9 153 43-205 38-218 (440)
344 KOG2396 HAT (Half-A-TPR) repea 85.9 39 0.00084 33.5 38.5 68 111-179 104-172 (568)
345 PF07721 TPR_4: Tetratricopept 85.8 1 2.2E-05 23.8 2.5 23 114-136 3-25 (26)
346 KOG4642 Chaperone-dependent E3 85.8 14 0.00029 32.7 10.3 81 123-204 21-104 (284)
347 PF02284 COX5A: Cytochrome c o 85.3 3.8 8.1E-05 30.4 5.8 45 507-551 29-73 (108)
348 KOG4570 Uncharacterized conser 85.1 18 0.00039 33.4 11.0 104 208-313 59-165 (418)
349 KOG1550 Extracellular protein 85.0 52 0.0011 34.3 27.2 181 128-315 228-429 (552)
350 COG4455 ImpE Protein of avirul 85.0 6.3 0.00014 34.1 7.8 75 217-292 5-81 (273)
351 TIGR03504 FimV_Cterm FimV C-te 84.9 2.6 5.6E-05 25.9 4.2 27 116-142 3-29 (44)
352 PF02259 FAT: FAT domain; Int 84.7 40 0.00086 32.6 19.7 61 146-206 145-212 (352)
353 COG4455 ImpE Protein of avirul 84.3 27 0.00059 30.4 11.5 62 116-178 5-66 (273)
354 TIGR03504 FimV_Cterm FimV C-te 84.2 2.2 4.8E-05 26.2 3.7 24 564-587 5-28 (44)
355 PF13181 TPR_8: Tetratricopept 83.9 1.4 3E-05 25.0 2.7 28 114-141 3-30 (34)
356 PF14561 TPR_20: Tetratricopep 83.5 5.2 0.00011 29.4 6.1 57 61-129 19-75 (90)
357 PF13929 mRNA_stabil: mRNA sta 83.4 37 0.0008 31.2 15.4 60 485-544 199-259 (292)
358 KOG4507 Uncharacterized conser 83.3 4.7 0.0001 40.3 7.3 105 119-224 614-721 (886)
359 PF13374 TPR_10: Tetratricopep 83.1 3.5 7.7E-05 24.6 4.5 28 559-586 3-30 (42)
360 smart00028 TPR Tetratricopepti 82.9 1.8 3.9E-05 23.6 3.0 31 65-95 2-32 (34)
361 KOG4077 Cytochrome c oxidase, 82.3 12 0.00026 29.1 7.6 40 546-585 72-111 (149)
362 PF10345 Cohesin_load: Cohesin 82.2 73 0.0016 33.8 38.5 181 51-240 40-252 (608)
363 KOG0376 Serine-threonine phosp 82.0 3.1 6.6E-05 40.5 5.5 94 70-178 10-103 (476)
364 PF09986 DUF2225: Uncharacteri 82.0 21 0.00045 31.5 10.4 120 20-144 56-197 (214)
365 PF13374 TPR_10: Tetratricopep 82.0 3.8 8.2E-05 24.4 4.4 27 490-516 4-30 (42)
366 PF10579 Rapsyn_N: Rapsyn N-te 81.6 4.9 0.00011 28.3 4.9 52 74-136 16-67 (80)
367 KOG2471 TPR repeat-containing 81.4 8.7 0.00019 37.6 8.2 109 44-159 252-381 (696)
368 PRK12798 chemotaxis protein; R 80.9 58 0.0012 31.7 21.5 195 31-242 80-286 (421)
369 KOG1308 Hsp70-interacting prot 80.7 1.7 3.8E-05 40.1 3.3 94 122-216 124-220 (377)
370 PF11207 DUF2989: Protein of u 80.4 16 0.00034 31.5 8.6 72 265-337 123-197 (203)
371 PF11207 DUF2989: Protein of u 79.9 22 0.00049 30.6 9.3 71 506-577 124-197 (203)
372 PRK10941 hypothetical protein; 79.4 14 0.00031 33.9 8.7 59 42-100 191-251 (269)
373 cd08819 CARD_MDA5_2 Caspase ac 78.9 19 0.00041 26.0 7.2 67 130-198 20-86 (88)
374 PF08424 NRDE-2: NRDE-2, neces 78.4 64 0.0014 30.8 17.4 50 128-178 47-96 (321)
375 PF13929 mRNA_stabil: mRNA sta 77.2 61 0.0013 29.9 18.2 139 468-606 143-291 (292)
376 PF02259 FAT: FAT domain; Int 76.1 77 0.0017 30.6 23.8 66 452-517 145-213 (352)
377 TIGR03362 VI_chp_7 type VI sec 76.1 70 0.0015 30.1 15.2 79 10-90 76-158 (301)
378 COG1747 Uncharacterized N-term 75.7 91 0.002 31.2 23.8 173 181-361 69-247 (711)
379 KOG0530 Protein farnesyltransf 75.4 63 0.0014 29.2 18.9 148 41-218 35-186 (318)
380 PRK15180 Vi polysaccharide bio 75.2 90 0.0019 30.9 29.6 122 72-208 297-421 (831)
381 smart00028 TPR Tetratricopepti 75.2 5.2 0.00011 21.5 3.3 28 114-141 3-30 (34)
382 COG0790 FOG: TPR repeat, SEL1 75.1 73 0.0016 29.8 20.4 149 44-208 53-221 (292)
383 PRK10941 hypothetical protein; 75.0 40 0.00086 31.0 10.3 64 114-178 183-246 (269)
384 PF00637 Clathrin: Region in C 74.8 1.8 3.9E-05 35.4 1.6 83 184-273 13-95 (143)
385 KOG0545 Aryl-hydrocarbon recep 74.3 40 0.00087 30.0 9.4 98 33-144 179-296 (329)
386 PF07163 Pex26: Pex26 protein; 73.9 50 0.0011 30.1 10.1 87 290-376 90-181 (309)
387 KOG2063 Vacuolar assembly/sort 73.7 1.5E+02 0.0032 32.6 19.5 65 114-178 506-575 (877)
388 KOG2066 Vacuolar assembly/sort 73.7 1.3E+02 0.0028 32.0 28.9 169 119-310 363-532 (846)
389 PF12862 Apc5: Anaphase-promot 73.5 10 0.00022 28.2 5.2 53 41-93 7-70 (94)
390 PF07575 Nucleopor_Nup85: Nup8 73.4 24 0.00051 36.9 9.7 132 34-175 300-433 (566)
391 KOG2582 COP9 signalosome, subu 73.4 86 0.0019 29.8 17.6 125 77-207 72-212 (422)
392 PF00637 Clathrin: Region in C 73.4 4.3 9.4E-05 33.1 3.6 83 117-203 12-95 (143)
393 PF11848 DUF3368: Domain of un 71.6 18 0.0004 22.7 5.2 34 568-601 12-45 (48)
394 COG3947 Response regulator con 71.4 85 0.0018 28.9 17.4 18 27-44 98-115 (361)
395 COG5159 RPN6 26S proteasome re 71.1 84 0.0018 28.8 11.7 126 255-380 10-152 (421)
396 PF09797 NatB_MDM20: N-acetylt 70.9 15 0.00032 35.9 7.1 47 79-139 198-244 (365)
397 cd00280 TRFH Telomeric Repeat 70.8 64 0.0014 27.4 9.4 55 80-140 85-139 (200)
398 PF10579 Rapsyn_N: Rapsyn N-te 70.6 18 0.0004 25.5 5.4 46 535-580 18-65 (80)
399 PF13934 ELYS: Nuclear pore co 70.0 17 0.00036 32.5 6.6 63 30-92 106-168 (226)
400 KOG4077 Cytochrome c oxidase, 68.9 35 0.00075 26.7 6.9 58 507-565 68-125 (149)
401 KOG3807 Predicted membrane pro 68.6 1E+02 0.0022 28.8 13.0 56 184-241 281-339 (556)
402 KOG4521 Nuclear pore complex, 66.9 2.2E+02 0.0047 32.1 14.5 125 69-194 925-1070(1480)
403 PF13762 MNE1: Mitochondrial s 66.8 69 0.0015 26.1 10.1 50 557-606 78-128 (145)
404 PHA02875 ankyrin repeat protei 66.4 1.4E+02 0.0031 29.6 13.8 78 292-377 8-89 (413)
405 smart00386 HAT HAT (Half-A-TPR 66.4 13 0.00027 20.4 3.6 22 78-99 1-22 (33)
406 KOG0890 Protein kinase of the 65.1 3.4E+02 0.0073 33.5 33.0 317 69-417 1388-1731(2382)
407 PF12862 Apc5: Anaphase-promot 64.3 32 0.00069 25.5 6.2 64 73-141 7-70 (94)
408 KOG1464 COP9 signalosome, subu 64.2 1.1E+02 0.0025 27.7 19.3 193 124-343 39-256 (440)
409 PF14853 Fis1_TPR_C: Fis1 C-te 64.1 37 0.00079 22.0 5.6 34 564-599 7-40 (53)
410 PF11846 DUF3366: Domain of un 63.8 41 0.00088 29.2 7.8 52 535-586 120-172 (193)
411 cd00280 TRFH Telomeric Repeat 63.3 57 0.0012 27.7 7.7 66 504-572 85-157 (200)
412 KOG4521 Nuclear pore complex, 62.6 1.6E+02 0.0036 32.9 12.7 25 116-140 924-948 (1480)
413 PRK11619 lytic murein transgly 62.2 2.2E+02 0.0048 30.4 39.1 140 34-192 35-177 (644)
414 KOG3807 Predicted membrane pro 62.1 1.4E+02 0.003 28.0 12.4 18 259-276 286-303 (556)
415 KOG0403 Neoplastic transformat 62.0 1.7E+02 0.0036 28.9 27.9 47 34-80 52-99 (645)
416 KOG2297 Predicted translation 60.8 1.4E+02 0.0031 27.7 16.8 21 453-473 321-341 (412)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 60.8 83 0.0018 25.0 9.1 92 491-585 29-126 (126)
418 PF14853 Fis1_TPR_C: Fis1 C-te 60.0 44 0.00096 21.6 6.0 33 68-100 5-37 (53)
419 PF11846 DUF3366: Domain of un 59.4 34 0.00074 29.7 6.5 52 44-95 120-175 (193)
420 KOG3824 Huntingtin interacting 59.3 16 0.00034 33.5 4.3 62 39-100 123-186 (472)
421 COG0735 Fur Fe2+/Zn2+ uptake r 58.4 74 0.0016 26.0 7.8 50 114-163 22-71 (145)
422 PF11848 DUF3368: Domain of un 57.2 45 0.00097 21.0 5.0 31 535-565 14-44 (48)
423 COG0735 Fur Fe2+/Zn2+ uptake r 57.1 89 0.0019 25.5 8.1 61 201-262 9-69 (145)
424 PF10366 Vps39_1: Vacuolar sor 56.9 22 0.00048 27.2 4.3 26 526-551 42-67 (108)
425 PF04762 IKI3: IKI3 family; I 56.4 3.4E+02 0.0073 30.6 15.4 27 34-60 696-722 (928)
426 COG5191 Uncharacterized conser 56.1 29 0.00062 32.0 5.4 78 61-153 104-182 (435)
427 COG4976 Predicted methyltransf 55.9 17 0.00037 31.9 3.8 57 41-97 4-62 (287)
428 KOG2297 Predicted translation 55.8 1.8E+02 0.0038 27.2 14.0 20 593-612 321-340 (412)
429 PF07575 Nucleopor_Nup85: Nup8 55.6 2.7E+02 0.0059 29.3 20.2 56 34-90 114-174 (566)
430 PF11663 Toxin_YhaV: Toxin wit 55.6 13 0.00029 29.3 2.9 30 571-602 108-137 (140)
431 cd08819 CARD_MDA5_2 Caspase ac 55.2 79 0.0017 23.0 7.1 63 304-372 23-85 (88)
432 PF02184 HAT: HAT (Half-A-TPR) 53.2 21 0.00046 20.1 2.6 24 573-598 2-25 (32)
433 KOG4567 GTPase-activating prot 52.2 1E+02 0.0022 28.6 8.1 57 508-569 263-319 (370)
434 COG4976 Predicted methyltransf 52.1 28 0.0006 30.6 4.4 59 72-144 3-61 (287)
435 KOG0687 26S proteasome regulat 51.1 2.2E+02 0.0048 26.9 14.2 25 114-138 106-130 (393)
436 PF07064 RIC1: RIC1; InterPro 51.0 2E+02 0.0043 26.4 14.4 151 34-208 84-250 (258)
437 PRK14956 DNA polymerase III su 50.9 2.2E+02 0.0048 28.9 11.1 19 75-93 211-229 (484)
438 PRK10564 maltose regulon perip 50.9 44 0.00096 30.9 5.8 41 556-596 254-295 (303)
439 PF09477 Type_III_YscG: Bacter 50.3 1.1E+02 0.0024 23.3 9.8 82 124-208 18-99 (116)
440 PF14689 SPOB_a: Sensor_kinase 50.2 42 0.0009 22.5 4.3 22 494-515 29-50 (62)
441 PF04762 IKI3: IKI3 family; I 49.3 4.4E+02 0.0094 29.8 15.9 20 153-172 700-719 (928)
442 KOG0551 Hsp90 co-chaperone CNS 48.9 76 0.0016 29.8 6.9 91 115-205 84-180 (390)
443 KOG2471 TPR repeat-containing 48.8 1.4E+02 0.003 29.9 8.8 57 118-174 246-310 (696)
444 PF10366 Vps39_1: Vacuolar sor 48.7 1.2E+02 0.0026 23.2 7.3 27 114-140 41-67 (108)
445 KOG3364 Membrane protein invol 48.6 1.4E+02 0.0031 24.0 9.7 64 144-207 29-100 (149)
446 PF13934 ELYS: Nuclear pore co 48.6 2E+02 0.0044 25.7 15.2 101 115-224 79-183 (226)
447 cd07153 Fur_like Ferric uptake 48.0 69 0.0015 24.8 6.0 48 117-164 5-52 (116)
448 KOG3364 Membrane protein invol 47.8 1.5E+02 0.0032 23.9 10.5 67 520-586 29-99 (149)
449 PF14689 SPOB_a: Sensor_kinase 47.8 51 0.0011 22.1 4.4 23 563-585 28-50 (62)
450 KOG0991 Replication factor C, 47.6 2.1E+02 0.0045 25.6 13.1 85 480-568 186-282 (333)
451 KOG2063 Vacuolar assembly/sort 45.5 4.6E+02 0.01 29.0 22.8 114 181-294 507-637 (877)
452 COG2912 Uncharacterized conser 45.4 56 0.0012 29.8 5.5 59 41-99 190-250 (269)
453 PF01475 FUR: Ferric uptake re 45.2 72 0.0016 24.9 5.7 50 114-163 9-58 (120)
454 PF07720 TPR_3: Tetratricopept 45.0 45 0.00098 19.4 3.3 20 67-86 4-23 (36)
455 COG2256 MGS1 ATPase related to 44.6 3.2E+02 0.0069 26.9 16.5 44 114-157 248-294 (436)
456 smart00777 Mad3_BUB1_I Mad3/BU 44.4 1.6E+02 0.0035 23.4 9.5 43 540-582 80-123 (125)
457 KOG1497 COP9 signalosome, subu 44.4 2.8E+02 0.006 26.1 17.7 65 68-139 107-171 (399)
458 KOG0128 RNA-binding protein SA 44.3 4.5E+02 0.0097 28.5 35.9 93 114-207 115-219 (881)
459 PRK10564 maltose regulon perip 43.8 48 0.001 30.7 4.9 37 250-286 259-295 (303)
460 PF04190 DUF410: Protein of un 43.1 2.7E+02 0.0058 25.6 16.6 21 181-201 93-113 (260)
461 PF07163 Pex26: Pex26 protein; 43.0 2.7E+02 0.0059 25.7 13.5 89 323-411 88-181 (309)
462 KOG2908 26S proteasome regulat 41.7 3.2E+02 0.0069 26.0 10.1 65 459-523 81-155 (380)
463 PF09986 DUF2225: Uncharacteri 41.2 2.6E+02 0.0056 24.8 11.7 66 525-590 120-197 (214)
464 KOG0551 Hsp90 co-chaperone CNS 41.0 1.1E+02 0.0023 28.9 6.6 101 65-176 82-182 (390)
465 KOG4279 Serine/threonine prote 40.8 4.9E+02 0.011 27.9 11.7 123 28-161 197-334 (1226)
466 PF11663 Toxin_YhaV: Toxin wit 40.7 44 0.00094 26.6 3.6 28 227-256 109-136 (140)
467 PF15297 CKAP2_C: Cytoskeleton 40.7 3.4E+02 0.0073 26.0 9.9 63 540-604 120-186 (353)
468 COG5108 RPO41 Mitochondrial DN 40.1 2.3E+02 0.005 29.6 9.2 91 218-311 33-131 (1117)
469 KOG4567 GTPase-activating prot 40.1 1E+02 0.0022 28.7 6.2 58 543-605 263-320 (370)
470 PF11817 Foie-gras_1: Foie gra 40.0 2.1E+02 0.0046 26.0 8.7 58 527-584 182-244 (247)
471 PF03745 DUF309: Domain of unk 39.9 1.2E+02 0.0025 20.5 5.7 49 121-169 8-61 (62)
472 KOG0292 Vesicle coat complex C 39.9 64 0.0014 34.6 5.7 129 36-203 624-752 (1202)
473 PF09454 Vps23_core: Vps23 cor 39.9 78 0.0017 21.5 4.3 50 521-571 6-55 (65)
474 PF03745 DUF309: Domain of unk 39.7 1.2E+02 0.0025 20.5 5.5 48 363-410 9-61 (62)
475 PF14863 Alkyl_sulf_dimr: Alky 39.4 1.6E+02 0.0036 23.9 6.9 29 71-99 77-105 (141)
476 PF10475 DUF2450: Protein of u 39.1 3.3E+02 0.0072 25.5 10.2 23 386-408 195-217 (291)
477 PF09868 DUF2095: Uncharacteri 39.0 1.3E+02 0.0028 23.0 5.6 40 564-604 67-106 (128)
478 PF11817 Foie-gras_1: Foie gra 39.0 1.1E+02 0.0025 27.7 6.8 61 68-138 182-244 (247)
479 COG2912 Uncharacterized conser 38.9 2E+02 0.0043 26.4 7.9 62 116-178 185-246 (269)
480 PRK11639 zinc uptake transcrip 38.8 2E+02 0.0042 24.3 7.6 49 115-163 28-76 (169)
481 PHA02875 ankyrin repeat protei 38.5 4.1E+02 0.0089 26.4 15.0 12 123-134 10-21 (413)
482 PRK11639 zinc uptake transcrip 38.4 1.8E+02 0.0039 24.6 7.4 60 514-574 17-76 (169)
483 COG4003 Uncharacterized protei 38.1 1.4E+02 0.003 21.3 5.2 34 565-599 38-71 (98)
484 PRK09857 putative transposase; 38.0 3.1E+02 0.0068 25.7 9.5 66 526-592 209-274 (292)
485 KOG0686 COP9 signalosome, subu 38.0 4E+02 0.0087 26.1 13.5 90 251-342 153-253 (466)
486 PF14669 Asp_Glu_race_2: Putat 37.9 2.7E+02 0.0058 24.1 13.7 159 206-378 1-206 (233)
487 PF10516 SHNi-TPR: SHNi-TPR; 37.6 72 0.0016 18.9 3.4 29 65-93 2-30 (38)
488 PRK09462 fur ferric uptake reg 37.6 1.7E+02 0.0037 24.0 7.0 35 538-572 32-66 (148)
489 PF15297 CKAP2_C: Cytoskeleton 37.5 3.4E+02 0.0075 26.0 9.4 61 164-224 120-186 (353)
490 PF04190 DUF410: Protein of un 37.2 3.3E+02 0.0072 25.0 19.7 102 159-271 2-113 (260)
491 COG0790 FOG: TPR repeat, SEL1 35.9 3.7E+02 0.0079 25.1 23.3 82 124-208 53-143 (292)
492 COG5108 RPO41 Mitochondrial DN 35.7 2E+02 0.0044 30.0 8.1 91 493-586 33-131 (1117)
493 PRK13184 pknD serine/threonine 35.7 6.9E+02 0.015 28.2 29.9 354 40-425 483-877 (932)
494 PF13762 MNE1: Mitochondrial s 35.6 2.5E+02 0.0053 23.0 11.0 82 320-401 41-128 (145)
495 TIGR02508 type_III_yscG type I 35.5 1.9E+02 0.0042 21.8 7.7 46 127-173 20-65 (115)
496 KOG2422 Uncharacterized conser 34.3 5.5E+02 0.012 26.6 19.3 162 126-311 252-447 (665)
497 PF12926 MOZART2: Mitotic-spin 33.9 1.9E+02 0.004 21.1 7.9 43 544-586 29-71 (88)
498 KOG2034 Vacuolar sorting prote 33.6 6.8E+02 0.015 27.5 30.0 44 326-378 512-555 (911)
499 PF10475 DUF2450: Protein of u 32.8 4.2E+02 0.0091 24.9 11.7 22 394-415 133-154 (291)
500 PF09670 Cas_Cas02710: CRISPR- 32.6 4.9E+02 0.011 25.6 11.2 126 290-416 138-269 (379)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-69 Score=581.93 Aligned_cols=554 Identities=17% Similarity=0.256 Sum_probs=521.7
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.+....+.++..+.+.|+++.|.++|+.+. +++..+|+.++..+.+.|++++|..+|++|...+. .
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-------------~ 184 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-------------R 184 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHHHHHHhcCC-CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------C
Confidence 455577889999999999999999999998 57899999999999999999999999999987532 2
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLL 189 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 189 (619)
++..+|+.++.+|.+.+++..+.+++..+.+.|..|++.+++.++.+|++.|++++|..+|++|...+..+|+.++.+|+
T Consensus 185 Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264 (857)
T ss_pred CChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 23348999999999999999999999999999999999999999999999999999999999998766666999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+.|++++|+++|.+|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|..||..+|++++.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+
T Consensus 345 vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 345 VFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 9999964 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLL 429 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 429 (619)
.|+..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..++..+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 99999999999999999999999999999864 5888999999999999999999999999986 589999999999
Q ss_pred Hhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047659 430 ING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSL 504 (619)
Q Consensus 430 l~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 504 (619)
+.+ .++.+.+++..+.+.|..++..++++|+++|+++|+.++|..+|+.+ .||..+||++|.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 986 88999999999999999999999999999999999999999999987 58999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 505 SSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME-RNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 505 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 689999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 584 LTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 584 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
|. +.||..+|++|+.+|...|..++.+.
T Consensus 651 m~---~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 651 MP---ITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred CC---CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 84 79999999999999998888776543
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-68 Score=572.90 Aligned_cols=569 Identities=16% Similarity=0.201 Sum_probs=427.2
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh------
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN------ 99 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------ 99 (619)
..++...+.++..+.+.|++++|+.+|+.+.. +++..++..++..+.+.+.++.|..++..++...+....
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 34566789999999999999999999999987 678888999999999999999999999988876543211
Q ss_pred ------------HHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 100 ------------FFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 100 ------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
+.+.+....+++..+|+.++.+|.+.|++++|.++|++|...|..||..+|+.++.++.+.++...+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 11122222233444666777777777777777777777666666666667766776666666666666
Q ss_pred HHHHHHhhCCc--cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 168 KLCRAMRGKGF--CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 168 ~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
+++..+.+.+. ++ ++.++.+|++.|+++.|.++|+.|. .||..+||.+|.+|++.|++++|.++|++|...|
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 66666666654 32 6667777777777777777776664 3566667777777777777777777777777666
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047659 244 PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSS 323 (619)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 323 (619)
+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 6777777777777777777777777777777766777777777777777777777777777776664 346666777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047659 324 VMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGK 403 (619)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 403 (619)
++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 77777777777777777777776667777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 047659 404 LRDGFSLYDNMIKRGLKPDAVVCSLLING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFML 478 (619)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 478 (619)
+++|.++|+.|.+ +|..+|+.++.+ ..++|+.+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..
T Consensus 440 ~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 440 IDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 7777777766653 455666666655 56677777777764 4677777777777777777777777777777
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCH
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDI 558 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 558 (619)
+.+.|+.+|..++|+++.+|++.|++++|..+|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 777777777777788888888888888888888776 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhhcCcccccchh
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLT-DRGLEPDIITYNTIICGYCSLNSCLIDGYF 615 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 615 (619)
.||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|++|+.+|++.|+.+-+..+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999 689999999999999999999987665433
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-67 Score=549.44 Aligned_cols=527 Identities=17% Similarity=0.249 Sum_probs=481.2
Q ss_pred hHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh
Q 047659 50 PAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI 128 (619)
Q Consensus 50 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (619)
.+....++... .++...+..+...+.+.|++++|.++|+.|...+..+++.. .+..++..|.+.|.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v------------~~~~li~~~~~~g~~ 422 (1060)
T PLN03218 355 NSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI------------YHAKFFKACKKQRAV 422 (1060)
T ss_pred hhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH------------HHHHHHHHHHHCCCH
Confidence 34444444444 66777888888999999999999999999988765544432 677888999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
++|..+|+.|. .|+..+|+.++.+|++.|+++.|.++|+.|.+.+. |. |+.++.+|++.|+++.|.++|++|
T Consensus 423 ~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 423 KEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 99999999984 48999999999999999999999999999999886 44 999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME--MDLVPD 282 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~ 282 (619)
.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 578999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-----cHHHH
Q 047659 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-----LMGDA 437 (619)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~a 437 (619)
|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+ ..++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c------------
Q 047659 438 LRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS----Q------------ 501 (619)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 501 (619)
.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++..|.+ .
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999866432 1
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 047659 502 -------GSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNL 574 (619)
Q Consensus 502 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 574 (619)
+..+.|..+|++|.+.|+.||..||+.++.++...+..+.+..+++.|...+..|+..+|+++++++.+. .
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 1246799999999999999999999999988888889999999999998888889999999999998432 4
Q ss_pred HHHHHHHHHHHhCCCCCCHH
Q 047659 575 DAALKLFGQLTDRGLEPDII 594 (619)
Q Consensus 575 ~~A~~~~~~~~~~g~~p~~~ 594 (619)
++|..++++|...|+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 68999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.8e-67 Score=547.87 Aligned_cols=495 Identities=18% Similarity=0.318 Sum_probs=470.2
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHh
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLR 190 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 190 (619)
...|..+...+++.|++++|.++|+.|.+.+.. ++...+..++..|.+.|..++|..+++.|...+..+|+.++.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 337888999999999999999999999998854 5667778899999999999999999999987222349999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 271 YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD--RGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 271 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999986 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047659 429 LING-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503 (619)
Q Consensus 429 ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 503 (619)
++.+ .+++|..+|+.|...+..|+..+|++||.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----c-------------------CChHHHHHHHHHHHHCCCCcCHHH
Q 047659 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFK----G-------------------KNISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 504 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
+++|.+++.+|.+.|+.||..+|++++..|.+ + +..+.|..+|++|.+.|+.||..|
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999976542 1 124679999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
|+.++.++++.+..+.+..+++.|...+..|+..+|++||+++++.
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 9999988889999999999999999888999999999999999754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-59 Score=492.62 Aligned_cols=476 Identities=19% Similarity=0.298 Sum_probs=443.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+...|..++..+.+.|++++|..+|+.+....+..++ ..+|+.++.++.+.++++.|.+++..|.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~------------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~ 151 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP------------ASTYDALVEACIALKSIRCVKAVYWHVES 151 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345568999999999999999999999999875443332 23899999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
.|..||+.+++.++..|++.|++++|.++|++|.+.+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 99999999999999999999999999999999987555559999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047659 221 KRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLK 300 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 300 (619)
.+++..|..+.+.+++..+.+.|..||..+|++++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.+
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 68999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 301 EGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVL 380 (619)
Q Consensus 301 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 380 (619)
+|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 047659 381 IRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLM 460 (619)
Q Consensus 381 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (619)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.| |..+|++++
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P------------------------------d~~T~~~ll 433 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP------------------------------NHVTFLAVL 433 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------------CHHHHHHHH
Confidence 4689999999999999999999999999999886654 677899999
Q ss_pred HHHHhcCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh
Q 047659 461 DGCCRLKRATDTVKLFMLMGM-YNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI 539 (619)
Q Consensus 461 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (619)
.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999975 699999999999999999999999999998875 5789999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047659 540 SVGLHMFKLMERNGVAP-DIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEP 591 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 591 (619)
+.|.++++++.+. .| +..+|..++..|++.|++++|.++++.|.+.|+..
T Consensus 511 ~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 511 ELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999764 45 46799999999999999999999999999998753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.5e-59 Score=487.91 Aligned_cols=502 Identities=16% Similarity=0.246 Sum_probs=451.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.+..++..+.+.|++++|+++|+++.. .++..+|..++..+.+.++++.|..++..+...+-.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~------------- 155 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE------------- 155 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------------
Confidence 688999999999999999999999986 457788999999999999999999999999875332
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc--hHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV--YEFLM 185 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~--~~~l~ 185 (619)
++..+|+.++..|.+.|++++|.++|++| +.||..+|+.++.+|++.|++++|+++|++|.+.++ +. |..++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 12239999999999999999999999999 468999999999999999999999999999998887 33 99999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLE 265 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 265 (619)
.+++..|..+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++| ..+|..+||+++.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 4679999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh
Q 047659 346 NGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVV 425 (619)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 425 (619)
+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-------- 455 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-------- 455 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh--------
Confidence 4 7999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred HHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 047659 426 CSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLS 505 (619)
Q Consensus 426 ~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 505 (619)
.++.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++
T Consensus 456 ---------------------~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 456 ---------------------HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred ---------------------cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 133457788999999999999999999998876 46899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH-HHHHH-------HHHH----HHcC
Q 047659 506 SAILLFFQMLKRGLTP-DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA-IYNVL-------LNML----IKEC 572 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l-------~~~~----~~~g 572 (619)
.|..+++++.+ +.| +..+|..++..|.+.|++++|.++++.|.+.|+...+. +|..+ +..- ....
T Consensus 512 ~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999975 455 46799999999999999999999999999998753322 22111 0000 0011
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH
Q 047659 573 NLDAALKLFGQLTDRGLEPDII 594 (619)
Q Consensus 573 ~~~~A~~~~~~~~~~g~~p~~~ 594 (619)
-++...++..+|.+.|+.||..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2455667888899999999843
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-33 Score=312.96 Aligned_cols=561 Identities=13% Similarity=0.060 Sum_probs=378.7
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH--------------
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR-------------- 102 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------- 102 (619)
...+...|++++|...|+.+.. |.+...+..++.++...|++++|...+++++...|.+...+.
T Consensus 302 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3444556666666666666655 555555566666666666666666666666665554433110
Q ss_pred ---HHH---hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 103 ---LFR---DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 103 ---~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.+. ...|.....+..++..+...|++++|++.|+.+.+..+. +......++..+.+.|++++|..+++.+...
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 000 001111124555555666666666666666666554333 3334445555666666666666666666655
Q ss_pred Cc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 177 GF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 177 ~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
.| ++ +..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+...++ .+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHH
Confidence 55 22 6666666666667777777666666653 44455556666666666777777777776665433 25556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD 333 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (619)
+...+.+.|++++|...++.+...+. .+...+..++..+...|++++|..+++.+.+.. +.+...|..+...+...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 66667677777777777777665432 245566667777777777777777777776543 3366677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 334 VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
+++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+...+...|++++|..+++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776643 33556677777777777777777777777776532 2456677777777778888888888877
Q ss_pred HHHcCCCCCHhhHHHHH-----hccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047659 414 MIKRGLKPDAVVCSLLI-----NGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~ll-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 488 (619)
+.+... .+...+..+. .+..++|...+..+....+ +..++..+..++.+.|++++|...++.+.+.. +.+.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 776532 2222222221 2378888888888877653 33666778888888888888888888887654 5677
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047659 489 ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNML 568 (619)
Q Consensus 489 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (619)
..+..+...|...|++++|..+|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.+.. +.+..++..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 788888888888999999999999988764 5577788888889999888 77999999888753 33566788888899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 569 IKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
...|++++|.+.++++.+.+. .++.++..+..++++.|....+..
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999998653 388999999999999998876644
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6e-34 Score=315.06 Aligned_cols=536 Identities=13% Similarity=0.058 Sum_probs=437.1
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-----------
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR----------- 102 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 102 (619)
..+...+.+.|++++|+..++.+.. +.++..+..++.++.+.|++++|...|+++...+|.......
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 3344444555555555555555544 444445555555555555555555555555555444332210
Q ss_pred ------HHH---hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 103 ------LFR---DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 103 ------~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
.+. ...|........++..+.+.|++++|..+++.+....+ +++..+..++.++...|++++|.+.|+++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 000 11222333677888999999999999999999988654 47889999999999999999999999999
Q ss_pred hhCCcc-c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGFC-V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~~-~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+..|+ . +..++..+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++...++ .+...
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 569 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEP 569 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhH
Confidence 998883 2 8888999999999999999999999886 66788899999999999999999999999987644 36777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVG 330 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 330 (619)
+..++..+...|++++|.++++.+.+.. +.+..+|..+..++...|++++|...++.+.+... .+...+..+...+..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 8889999999999999999999998753 44788999999999999999999999999988753 367788899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 047659 331 IGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSL 410 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 410 (619)
.|++++|...++++.+.. +.+..++..+...+...|++++|.++++.+..... .+...+..+...+.+.|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998763 44688899999999999999999999999988753 4677788889999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHh-----ccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047659 411 YDNMIKRGLKPDAVVCSLLIN-----GLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ll~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 485 (619)
+..+...+ |+..++..+.. +..++|...+..+.+..+ .+...+..+...|...|+.++|...|+.+.+.. +
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p 801 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-P 801 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-C
Confidence 99998874 33333322222 288999999999887654 378889999999999999999999999998875 5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
++...++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.. +..++..+.
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 878 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLA 878 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHH
Confidence 678899999999999999 88999999998753 345667788899999999999999999999997644 889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 047659 566 NMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~ 585 (619)
.++.+.|++++|.+++++|+
T Consensus 879 ~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 879 LALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=4.5e-26 Score=251.59 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=101.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
+...+..+...+.+.|+.++|+..|+...... +.+...+..++..+...|++++|++.++.+.+.. +.+..++..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHH
Confidence 45566777888888888888888888887764 4567778888888888888888888888777542 234455666777
Q ss_pred HHHccCChHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC
Q 047659 532 GLFKGKNISVGLHMFKLMERNGV--AP---DIAIYNVLLNMLIKECNLDAALKLFGQLTD-RGLEP 591 (619)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 591 (619)
++...|++++|.++++.+..... .| +...+..+...+...|++++|++.|++... .|+.|
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 78888888888888888876422 12 224566667788888888888888888763 44443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.4e-25 Score=247.84 Aligned_cols=566 Identities=13% Similarity=0.053 Sum_probs=412.7
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh--hc
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD--SL 108 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~ 108 (619)
..+...+..+...++.+.|.+.++.+.. |.++.++...+.++.+.|+.++|.+.+++..+..|.+......... ..
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 3577888888999999999999999988 8999999999999999999999999999999999998775332211 12
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l 184 (619)
++.......++..+.+.|++++|++.|+.+.+.+++ +.. ............|++++|++.++++.+..| ++ +..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 233334567778889999999999999999876544 332 222222223346889999999999999988 33 7788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--------------------------------CChhhH----------------
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFV--------------------------------PNIVTC---------------- 216 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~---------------- 216 (619)
...+...|+.++|++.++++.+.... |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 88888999999999999887653200 000000
Q ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH----
Q 047659 217 -----NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-DLIIY---- 286 (619)
Q Consensus 217 -----~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~---- 286 (619)
......+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 01133456679999999999998886443 67788889999999999999999999988754322 11111
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 287 --------SILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSI 358 (619)
Q Consensus 287 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (619)
......+.+.|++++|...++++.+.... +...+..+...+...|++++|.+.|++..+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 12234567889999999999999987543 66777788899999999999999999988753 122323222
Q ss_pred H------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047659 359 L------------------------------------------IKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLID 396 (619)
Q Consensus 359 l------------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 396 (619)
+ ...+...|++++|.+.+++..+.... +...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2 23345678888888888888876433 4556677888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHh--hHH-HHH---hccHHHHHHHHHHHHhCCCCCCHh---------hHHHHHH
Q 047659 397 GFCKSGKLRDGFSLYDNMIKRGLKPDAV--VCS-LLI---NGLMGDALRFFFQSVRMTLIPNLF---------IFNTLMD 461 (619)
Q Consensus 397 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~ll---~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~ 461 (619)
.|.+.|++++|...++++.+. .|+.. .+. .+. ....++|+..++.+......++.. .+..+..
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 888999999999999888765 23222 111 111 126777877777654332222211 1234566
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHH
Q 047659 462 GCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISV 541 (619)
Q Consensus 462 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 541 (619)
.+...|+.++|..+++. .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++
T Consensus 582 ~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 77889999999998872 25566677888899999999999999999999863 4467889999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCccccc
Q 047659 542 GLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGL--EP---DIITYNTIICGYCSLNSCLID 612 (619)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~ll~~~~~~~~~~~~ 612 (619)
|.+.++.+.+.. +.+...+..+..++...|++++|.++++++....- .| +...+..+.+.+.+.|+...+
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999999887642 23556777888899999999999999999986421 22 224555566677777766554
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-23 Score=196.15 Aligned_cols=442 Identities=16% Similarity=0.134 Sum_probs=349.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....+.....+.|++.+|++....+-. +.+.+....+..++.+..+++....--...++..|.-.+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae------------ 117 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAE------------ 117 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHH------------
Confidence 455666677778888888888776665 666666677777777777887777766666666665555
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~ 188 (619)
.|..++..+-..|++++|+..++.+++..++ ....|..+..++...|+.+.|...|...++.+|+. ...+...+
T Consensus 118 --~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 --AYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred --HHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 8889999999999999999999999987655 77889999999999999999999999999999833 66677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 267 (619)
-..|+.++|...+.++++.. +--...|+.|...+-..|+...|+..|++.... .|+ ...|-.|...|...+.+++|
T Consensus 195 ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 78899999999999888874 344567888888898999999999999998874 444 56788889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (619)
...|......... ....+..+...|...|..+.|.+.+++..+..+. -...|+.|..++-..|+..+|...|.+....
T Consensus 272 vs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 9999888765322 4567777888888999999999999999887543 4678999999999999999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 047659 348 GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVC 426 (619)
Q Consensus 348 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 426 (619)
. +-.....+.|...+.+.|.+++|..+|.....- .|. ....+.+...|-+.|++++|+..+++..+- .|+
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~---- 420 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT---- 420 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch----
Confidence 3 235667888899999999999999999888765 333 345778888899999999999999888764 443
Q ss_pred HHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047659 427 SLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSS 506 (619)
Q Consensus 427 ~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 506 (619)
-...|+.+...|-..|+.+.|.+.+......+ +.-....+.|...|-..|++.+
T Consensus 421 -------------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 421 -------------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred -------------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHH
Confidence 23467778888888899999999888877653 2335577888888889999999
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDV-ITYSAIIHG 532 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~-~~~~~l~~~ 532 (619)
|+.-|+..++- +||. ..|..++.+
T Consensus 475 AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 475 AIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 99999998864 5653 344444443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=5.3e-21 Score=201.67 Aligned_cols=536 Identities=10% Similarity=-0.039 Sum_probs=348.1
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
...+...|++++|+..|+.+.. |.++.++..++..+.+.|++++|+..++++++.+|.+.. .+.
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~--------------~~~ 116 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR--------------LER 116 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH--------------HHH
Confidence 3334557999999999999998 888999999999999999999999999999999987654 233
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--------HHhcCChhHHHHHHHHHhhCCccc---hHHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC--------LVDSNSVGQYYKLCRAMRGKGFCV---YEFLM 185 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~ 185 (619)
.++.. +++++|..+++++....|. +..++..+... |.+.++...+++ .+.....+++ ...+.
T Consensus 117 ~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 117 SLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHH
Confidence 33222 8888888888888887655 66666666665 666655555555 3333333222 44447
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
+.|...|+++.|++.+.++.+.+ +.+......+..+|.. .++ +.+..++... .+.+...+..+...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888886 5555556666677776 356 6666665432 345777788888888888888
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCCHHHHHHHHH------
Q 047659 265 EKAFQLYNLMMEMDLV-PDLIIYS------------------------------ILIDGLFKAGRLKEGNELLL------ 307 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~-~~~~~~~------------------------------~ll~~~~~~~~~~~a~~~~~------ 307 (619)
++|.++++++...... |+..++. .++..+.+.++++.++++..
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 8888888887643211 2222211 11344445555554444421
Q ss_pred -----------------------HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 047659 308 -----------------------TALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG-G-FLPNVISYSILIKG 362 (619)
Q Consensus 308 -----------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~ 362 (619)
.|.+.. +-+......+.....+.|+.++|..+|+..... + -.++......++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 111110 113333333344455677788888888777652 1 12234444466666
Q ss_pred HHhcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 363 LCQQGR---LVEACGL----------------------FGQVLIR-RL-EP--SLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 363 ~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
|.+.+. ...+..+ ++..... +. ++ +...|..+..++.. +++++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 666554 2222222 1111111 11 22 45556666666655 777788887777
Q ss_pred HHHcCCCCCHhhHHHH-----HhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 047659 414 MIKRGLKPDAVVCSLL-----INGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDV 488 (619)
Q Consensus 414 ~~~~~~~~~~~~~~~l-----l~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 488 (619)
.... .|+......+ -.++.++|...++.+... .|+...+..+..++.+.|+.++|...++...+.. +.+.
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 6655 3554321111 122788888888876554 2333445566677788888888888888877654 2233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047659 489 ITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNML 568 (619)
Q Consensus 489 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (619)
..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..... +.+...+..+..++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33333333444558888888888888865 5677778888888888888888888888888753 23566777787888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCcccccc
Q 047659 569 IKECNLDAALKLFGQLTDRGLEP-DIITYNTIICGYCSLNSCLIDG 613 (619)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~ 613 (619)
...|++++|++.+++..+ ..| +...+..+-.++.+.|+...+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 654 WDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888888887 345 4677888888888888876554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4.6e-20 Score=194.66 Aligned_cols=522 Identities=10% Similarity=0.024 Sum_probs=349.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++....+...++..|++++|+..++.+.. |.+...+..++.+ +++++|...|++++..+|.+.+
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~--------- 143 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDA--------- 143 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChh---------
Confidence 467778888999999999999999999998 5555555555444 9999999999999999999887
Q ss_pred CCCcccHHHHHHH--------HHHcCChhhHHHHHHHHHhCCCCCCHHhHHH-HHHHHHhcCChhHHHHHHHHHhhCCc-
Q 047659 109 GDFGCDYSFLIEN--------YVRIGKIDESVEIFAYMSDMGIYLSPDLVQR-LMSCLVDSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~- 178 (619)
++..++.. |.+.+...++++ .....+.|++.+... +.++|.+.+++++|++.+.++.+.++
T Consensus 144 -----~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl 214 (987)
T PRK09782 144 -----VPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL 214 (987)
T ss_pred -----HHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Confidence 44555554 555544444443 222224444444433 37777778888888888888877777
Q ss_pred cc--hHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-CChhhHH--
Q 047659 179 CV--YEFLMNGLLR-KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK-PNVVTFS-- 252 (619)
Q Consensus 179 ~~--~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~-- 252 (619)
+. ...+..+|.. .++ +.+..++.. ....+...+..+...|.+.|+.++|.+++.++...... |...+|.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 22 5556666666 355 666666442 22356777777777777888888877777776532111 1111111
Q ss_pred ----------------------------HHHHHHHhcCCHHHHHHHH-----------------------------HHHH
Q 047659 253 ----------------------------TLINAFCKEAKLEKAFQLY-----------------------------NLMM 275 (619)
Q Consensus 253 ----------------------------~l~~~~~~~~~~~~a~~~~-----------------------------~~m~ 275 (619)
.++..+.+.++++.+.++. +.|.
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 1133444455555444432 2222
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHcCCC---HHHHHHH----------
Q 047659 276 EMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR-G-LKLDVVVFSSVMDAYVGIGD---VGRAVQT---------- 340 (619)
Q Consensus 276 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~---~~~a~~~---------- 340 (619)
+.. +-+......+.-...+.|+.++|.++++..... + ..++.....-++..|.+.+. ..++..+
T Consensus 370 ~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 370 QQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 210 113333333334456788999999999988762 1 23355566677777776655 3333222
Q ss_pred ------------HHHHHhC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 341 ------------YDRMLNG-GF-LP--NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 341 ------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
++..... +. ++ +...|..+..++.. +++++|...+...... .|+......+..++...|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCH
Confidence 1111111 11 33 56677777777766 7888899988887766 45654444445556789999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHH-----HhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 405 RDGFSLYDNMIKRGLKPDAVVCSLL-----INGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLM 479 (619)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 479 (619)
++|...++.+... .|+...+..+ -.++.++|...++......+. +...+..+.......|++++|...++..
T Consensus 526 eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~A 602 (987)
T PRK09782 526 ATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRS 602 (987)
T ss_pred HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999987654 2332222111 123888999999988876422 3333334444445569999999999998
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 480 GMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
... .|+...+..+...+.+.|++++|...|++..... +.+...++.+..++...|+.++|+..+++..+.. +-+..
T Consensus 603 L~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~ 678 (987)
T PRK09782 603 LNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPA 678 (987)
T ss_pred HHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 876 4678889999999999999999999999999863 3456677888889999999999999999998853 23677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.+..+..++...|++++|+..+++..+ +.|+
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~ 709 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVID--DIDN 709 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 889999999999999999999999987 4564
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-20 Score=185.98 Aligned_cols=541 Identities=13% Similarity=0.086 Sum_probs=389.1
Q ss_pred HHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH---------------
Q 047659 42 LIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL--------------- 103 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------------- 103 (619)
....|++..|+.+|+.+.. ..-+.....+++.+.+.|+.+.|+..|+++++.+|...+++-.
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHH
Confidence 3668999999999999776 3344566788899999999999999999999999977665411
Q ss_pred -----HHhh---cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 104 -----FRDS---LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 104 -----~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
+... .+..+.+.+.|...|.-.|+++.+..+...+...... .-...+..++++|-..|+++.|...|...
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 1111 2445558888899999999999999999888765322 12345888999999999999999999998
Q ss_pred hhCCc-c-c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CcchHHHHHHHHHhCCCC
Q 047659 174 RGKGF-C-V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING----QIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 174 ~~~~~-~-~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~A~~~~~~~~~~~~~ 245 (619)
.+.++ + + +..+.+.+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.- +
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 88887 3 2 7788899999999999999999998884 566677777777777664 4567777777776653 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH
Q 047659 246 PNVVTFSTLINAFCKEAKLEKAFQLYNLMM----EMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---GLKLDV 318 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 318 (619)
.|...|-.+...+....-+.. +.+|..+. ..+..+.+...|.+...+...|++..|...|...... ...+|.
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 467778777777765554444 66665543 4455577888999999999999999999999888755 122232
Q ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047659 319 ------VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTY 391 (619)
Q Consensus 319 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 391 (619)
.+-..+....-..++++.|.+.|..+.+. .|+ ...|-.+....-..+...+|...+.+..... ..++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 12333445555677899999999988875 233 3344445444445678888888888887653 2355556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHhc-----------------cHHHHHHHHHHHHhCCCCCCH
Q 047659 392 SSLIDGFCKSGKLRDGFSLYDNMIKRG-LKPDAVVCSLLING-----------------LMGDALRFFFQSVRMTLIPNL 453 (619)
Q Consensus 392 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~-----------------~~~~a~~~~~~~~~~~~~~~~ 453 (619)
+.+...+.+...+..|..-|....+.. ..+|.++..++-+- ..+.|+++|.+.+...+. |.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hh
Confidence 666777888888888887666655432 22444443333221 567788888888876544 77
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHH
Q 047659 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPDVITYSAIIHG 532 (619)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~ 532 (619)
..-|.+.-+++..|++..|..+|.+..+.. .-...+|..+...|...|++..|+++|+...+.- -.-+..+...|.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 777888888889999999999999888764 2355678888899999999999999999887753 34467788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH------------------HHHcCCHHHHHHHHHHHHhCCCC
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNM------------------LIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...|.+.+|.+.+.......+.-....||..+.. ....+..+.|.++|..|...+-.
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999998888877775433333445443321 11224567788888888875433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=5.9e-22 Score=185.27 Aligned_cols=444 Identities=18% Similarity=0.182 Sum_probs=364.9
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
........+++-..+.|++.+|++.-.....++|.+.+ ....+...+.+..+.+.....-...++.
T Consensus 46 ~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~--------------~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 46 EGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE--------------RLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred ccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCccc--------------ceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 44455778899999999999999999888888887665 3334455667777777766655555555
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV-TCN 217 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~ 217 (619)
.+. ..++|..+..++-..|++++|+..|+.+++..| |.|..+..++...|+.+.|.+.|.+.++.+ |+.. ..+
T Consensus 112 ~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s 188 (966)
T KOG4626|consen 112 NPQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARS 188 (966)
T ss_pred cch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhc
Confidence 443 678999999999999999999999999999999 559999999999999999999999999874 5444 334
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFK 295 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 295 (619)
.+...+...|++++|...+-+.++. .|. ...|..|...+-..|+...|++.|++..+. .|+ ...|..|...|..
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 4555566689999999999998875 344 567999999999999999999999999875 344 5678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 047659 296 AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACG 374 (619)
Q Consensus 296 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~ 374 (619)
.+.++.|...+......... ....+..+...|...|+++.|+..|++..+. .|+ ...|+.|..++-..|+..+|..
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHH
Confidence 99999999999998876433 5677888888899999999999999999986 344 6789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHh
Q 047659 375 LFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLF 454 (619)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 454 (619)
.+.+....... -....+.+...|...|.+++|..+|....+. .|. -..
T Consensus 342 cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~-----------------------------~aa 389 (966)
T KOG4626|consen 342 CYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPE-----------------------------FAA 389 (966)
T ss_pred HHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--Chh-----------------------------hhh
Confidence 99999876333 4567888999999999999999999988764 332 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPD-VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-VITYSAIIHG 532 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 532 (619)
..+.|...|-+.|++++|+..|++...- .|+ ...|+.+...|-..|+.+.|...|.+.+.. .|. ...++.+...
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASI 465 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHH
Confidence 6788999999999999999999998764 555 568999999999999999999999999864 454 4678899999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHH
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPDIA-IYNVLLNM 567 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 567 (619)
|...|++.+|+.-++...+. +||.. .|..++.+
T Consensus 466 ~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred hhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 99999999999999999984 45532 34444333
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.2e-19 Score=177.20 Aligned_cols=520 Identities=11% Similarity=0.031 Sum_probs=288.6
Q ss_pred chhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 48 PTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 48 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
.+.|...|..+.. |++...+.+-+.+....|++..|..+|..++..+|..... ....+..++.+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-------------~rIgig~Cf~kl 212 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-------------VRIGIGHCFWKL 212 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-------------ccchhhhHHHhc
Confidence 4899999998887 8999999999999999999999999999999887754221 455566677788
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS---NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~ 199 (619)
|+.+.|+..|.++.+.+|. ++.++..|...-... ..+..+..++...-..++ ++ .+.+...|...|++..+..
T Consensus 213 ~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred cchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 8888888888888776552 444444443332222 233455555555555444 22 6666666666666666666
Q ss_pred HHHHHHHCCCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 200 MHRQVIQRGFV--PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+...++..... .-...|..+.++|-..|++++|...|.........--...+.-+...|.+.|+++.+...|+...+.
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 66666554211 1122355556666666666666666666555322211233344555666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HhCCC
Q 047659 278 DLVPDLIIYSILIDGLFKAG----RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRM----LNGGF 349 (619)
Q Consensus 278 ~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~ 349 (619)
. +-+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+-...-+ .++..|... ...+.
T Consensus 372 ~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 L-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGK 448 (1018)
T ss_pred C-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCC
Confidence 2 113344444444444332 3345555555554443 22455555554444333222 224433322 23333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR---RLEPSL------LTYSSLIDGFCKSGKLRDGFSLYDNMIKR--- 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 417 (619)
.+.+...|.+.......|.++.|...|...... ...++. .+--.+....-..++.+.|.+.|..+...
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 455555555555555566666665555555433 111111 11111223333344444555555444433
Q ss_pred --------------------------------CCCCCHhhHHHHHhc---cHHHHHHHHHHHHhCC-CCCCHhhHHHHHH
Q 047659 418 --------------------------------GLKPDAVVCSLLING---LMGDALRFFFQSVRMT-LIPNLFIFNTLMD 461 (619)
Q Consensus 418 --------------------------------~~~~~~~~~~~ll~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~ 461 (619)
...|+..++-.-+.. .+..|..-|..+.... ..+|..+.-+|..
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 122333322221111 2222333233222211 1134444445555
Q ss_pred HHHh------------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 047659 462 GCCR------------LKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAI 529 (619)
Q Consensus 462 ~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 529 (619)
.|.+ .+..++|+++|....... +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|..+
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNl 686 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNL 686 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeH
Confidence 4432 233456666666666554 45666666676777777777777777777776532 244566677
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 530 IHGLFKGKNISVGLHMFKLMERN-GVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
..+|+.+|++..|+++|+...+. ...-+..+...|.+++.+.|.+.+|.+.+.....
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777777777777777766553 3344666777777777777777777777766665
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.3e-20 Score=192.90 Aligned_cols=354 Identities=15% Similarity=0.126 Sum_probs=230.4
Q ss_pred HHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
++++.+++.---+|...++ ..+.......+..+.+.|++++|..+++.++...|.+.+ ++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~--------------~l~ 80 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD--------------LLR 80 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh--------------HHH
Confidence 4556666665555555444 334444556666677777777777777777777776666 555
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~~~~~~ 193 (619)
.++.+....|++++|+..|+++....|. ++..+..+...+...|++++|+..++++.+..|+ . +..++.++...|+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 5666666677777777777777776544 5667777777777777777777777777776662 2 6667777777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+++|...++.+.... +.+...+..+ ..+...|++++|...++.+....+.++...+..+..++...|++++|...|+.
T Consensus 160 ~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777666553 2233333333 23566777777777777766554333444444555666777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKE----GNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+.+.... +...+..+...+...|++++ |...++...+..+. +...+..+...+...|++++|...+++..+..
T Consensus 238 al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~- 314 (656)
T PRK15174 238 ALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH- 314 (656)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7765422 45666667777777777764 67777777765433 56677777777777777777777777777653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 350 LPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL-LTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
+.+...+..+...+.+.|++++|...++.+... .|+. ..+..+..++...|+.++|...|+...+.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 234555666667777777777777777777665 2332 22333455667777777777777776664
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2e-20 Score=193.35 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=283.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
..+..++....++|++++|+.+++.... |.++.++..++......|++++|...|++++..+|.+..
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----------- 111 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----------- 111 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH-----------
Confidence 3677888999999999999999999887 888999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~ 187 (619)
++..++..+.+.|++++|+..++++.+..+. ++..+..++.++...|++++|...++.+....|+. +..+ ..
T Consensus 112 ---a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~ 186 (656)
T PRK15174 112 ---DVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LS 186 (656)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HH
Confidence 7889999999999999999999999987554 78889999999999999999999999998887732 4333 35
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK- 266 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 266 (619)
+...|++++|...++.+++....++......+...+...|++++|...++.+....+. +...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhh
Confidence 7889999999999999988753344555556677888999999999999999987543 67788889999999999986
Q ss_pred ---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 267 ---AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 267 ---a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
|...|+...+.... +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|...++.
T Consensus 266 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999886433 6778999999999999999999999999987544 667788889999999999999999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 344 MLNGGFLPNV-ISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 344 ~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+...+ |+. ..+..+..++...|++++|...|+...+..
T Consensus 344 al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 98763 444 334445677889999999999999998773
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.4e-19 Score=188.06 Aligned_cols=431 Identities=10% Similarity=0.009 Sum_probs=277.1
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
+......+.+.|++++|+..|+.+.. .+++..+..++.++.+.|++++|+..+++++..+|....
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~-------------- 195 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK-------------- 195 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHH--------------
Confidence 34455566777777777777777776 445666777777777777777777777777777666555
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
++..++.+|...|++++|+..|..+...+...+. ....++..+.. ..+........+..+ +. +..+.. +..
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGN-YLQ 269 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHH-HHH
Confidence 6677777777777777777777666544322122 11122211111 122333333333333 11 222222 221
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhcCCcchHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHhcCCH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPN-IVTCNKILKR---LCINGQIGNASSLFDVLLLVGP-KP-NVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 264 (619)
......+..-+....+. .+. ...+..+... ....+++++|.+.|+.....+. .| ....|+.+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 11111111111111111 111 1111111111 1234678899999999887541 23 456678888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRM 344 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 344 (619)
++|+..|+...+.... +...|..+...+...|++++|...++++.+.... +..++..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876322 4667888888899999999999999999887543 6788889999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 047659 345 LNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV 424 (619)
Q Consensus 345 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 424 (619)
.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...++.+...+...|++++|...|+...+.. |+..
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~ 501 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETK 501 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Cccc
Confidence 8864 3356777888888999999999999999988763 2256778888999999999999999999987752 2210
Q ss_pred hHHHHHhccHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047659 425 VCSLLINGLMGDALRFFFQSVRMTLIPNL-FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS 503 (619)
Q Consensus 425 ~~~~ll~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 503 (619)
. ...+. ..++.....+...|++++|..++++..... +.+...+..+...+...|+
T Consensus 502 ~-----------------------~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 502 P-----------------------MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGD 557 (615)
T ss_pred c-----------------------ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccC
Confidence 0 00011 112222223334577777777777766543 2334456667777777777
Q ss_pred HHHHHHHHHHHHHC
Q 047659 504 LSSAILLFFQMLKR 517 (619)
Q Consensus 504 ~~~A~~~~~~~~~~ 517 (619)
+++|...|++..+.
T Consensus 558 ~~eAi~~~e~A~~l 571 (615)
T TIGR00990 558 VDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776653
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=5.2e-21 Score=189.08 Aligned_cols=300 Identities=15% Similarity=0.068 Sum_probs=140.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
......+..+...|++++|...|++++..+|.+.. ++..++..+...|++++|..+++.+......
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVE--------------LHLALGNLFRRRGEVDRAIRIHQNLLSRPDL 101 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHH--------------HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence 33344455556666777777777777666665544 5666666666777777777777666654221
Q ss_pred CC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----h
Q 047659 145 LS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI----V 214 (619)
Q Consensus 145 ~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 214 (619)
++ ...+..++..|.+.|++++|..+|+++.+..+ + .+..++..+...|++++|.+.++.+.+.+..++. .
T Consensus 102 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 102 TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 11 13445555666666666666666666555443 1 1444555555555555555555555444311111 1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047659 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLF 294 (619)
Q Consensus 215 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 294 (619)
.+..+...+...|++++|...|+++.+..+ .+...+..+...+.+.|++++|.++|+++.+.+......++..++.++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 122333344444444444444444443321 1233334444444444444444444444443321111233344444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHH
Q 047659 295 KAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ---QGRLVE 371 (619)
Q Consensus 295 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~ 371 (619)
..|++++|...++.+.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh
Confidence 4444444444444444332 22223344444444444444444444444332 2344444444433332 224444
Q ss_pred HHHHHHHHHHCC
Q 047659 372 ACGLFGQVLIRR 383 (619)
Q Consensus 372 a~~~~~~~~~~~ 383 (619)
+..+++.+.+++
T Consensus 337 a~~~~~~~~~~~ 348 (389)
T PRK11788 337 SLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.4e-18 Score=180.68 Aligned_cols=428 Identities=10% Similarity=0.002 Sum_probs=284.9
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++++|+..|++++...|. +. .|..++.+|.+.|++++|++.++.+++.++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~--------------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~- 192 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV--------------YYSNRAACHNALGDWEKVVEDTTAALELDPD- 192 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-
Confidence 3456788888899999999999999887664 22 6788888999999999999999999887554
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
+..++..+..+|...|++++|+..|..+...++ +. ...++..+.. ..+.......++.. +++...+..+..
T Consensus 193 ~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~- 266 (615)
T TIGR00990 193 YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN- 266 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-
Confidence 677888889999999999999888876655443 11 1122221111 22233333333332 233333333322
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINA---FCKEAKLEKAFQLYNLMMEMD-LVP-DLIIYSILIDGLFKA 296 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~ 296 (619)
+...........-++...+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 267 YLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred HHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 22222222222222222111 111 1111111111 123467888999998888754 223 345677777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 297 GRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLF 376 (619)
Q Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 376 (619)
|++++|...+++..+.... ....|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|
T Consensus 345 g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888876432 46677788888888899999999988887753 345777888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhH
Q 047659 377 GQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIF 456 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (619)
+........ +...+..+..++.+.|++++|+..++...+. .|+ +...+
T Consensus 423 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~-----------------------------~~~~~ 470 (615)
T TIGR00990 423 QKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE-----------------------------APDVY 470 (615)
T ss_pred HHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------------------------ChHHH
Confidence 888876432 4556677778888888888888888887764 333 45667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047659 457 NTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI------THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAII 530 (619)
Q Consensus 457 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 530 (619)
+.+...+...|++++|+..|+.........+.. .++.....+...|++++|..++++..... +.+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 778888888899999998888877653111111 11222223334688888888888887653 23445678888
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 047659 531 HGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..+...|++++|++.|++..+.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.7e-20 Score=185.42 Aligned_cols=302 Identities=17% Similarity=0.183 Sum_probs=255.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c------chHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C------VYEFLMNG 187 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~------~~~~l~~~ 187 (619)
....+..+...|++++|+..|+++.+.++. +..++..++..+...|++++|..+++.+..... + .+..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 334456678889999999999999997654 678899999999999999999999999987653 1 26788899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCC
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV----VTFSTLINAFCKEAK 263 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 263 (619)
+...|+++.|..+|..+.+.. +.+..++..++..+.+.|++++|.+.++.+...++.+.. ..+..+...+.+.|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999874 567888999999999999999999999999886554322 245667778889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
+++|.+.|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987642 256678888899999999999999999999875443356788999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCC
Q 047659 344 MLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK---SGKLRDGFSLYDNMIKRGLK 420 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~ 420 (619)
+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9886 466677788999999999999999999999876 6888888888887764 55899999999999987766
Q ss_pred CCH
Q 047659 421 PDA 423 (619)
Q Consensus 421 ~~~ 423 (619)
|++
T Consensus 351 ~~p 353 (389)
T PRK11788 351 RKP 353 (389)
T ss_pred CCC
Confidence 653
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=3e-19 Score=188.78 Aligned_cols=369 Identities=10% Similarity=0.032 Sum_probs=249.3
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+++|..+..-+..+.-.|+.++|++.+..+.. +....++..++..+...|++++|...|++++...|.+.+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------ 84 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------ 84 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 567899999999999999999999999999885 555566899999999999999999999999999888777
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hH
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YE 182 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~ 182 (619)
.+..++.++...|++++|+..++++++..|. ++. +..+..++...|++++|+..++++.+..| +. +.
T Consensus 85 --------a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~ 154 (765)
T PRK10049 85 --------YQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT 154 (765)
T ss_pred --------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6778999999999999999999999987555 677 98999999999999999999999999999 33 66
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHh-----cCCc---chHHHHHHHHHhC-CCCCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNI------VTCNKILKRLCI-----NGQI---GNASSLFDVLLLV-GPKPN 247 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~~~~-----~~~~---~~A~~~~~~~~~~-~~~~~ 247 (619)
.+..++...+..+.|++.++.+.. .|+. .....++..... .+++ ++|++.++.+... ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 778888889999999998887664 2221 011222222211 1223 5667777777643 11222
Q ss_pred hh-hH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH
Q 047659 248 VV-TF----STLINAFCKEAKLEKAFQLYNLMMEMDLV-PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL---DV 318 (619)
Q Consensus 248 ~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 318 (619)
.. .+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...+...|++++|+..|+.+.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11123445667778888888777766432 222 11224556777777888888777776543211 12
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 319 VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF-----------LPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRL 384 (619)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 384 (619)
.....+..++...|++++|.++++.+..... .|+ ...+..+...+...|++++|+++++++....+
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P 390 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP 390 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555666777777777777777765420 112 11233444455555666666666665554422
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 385 EPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 385 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
. +...+..+...+...|++++|+..++.....
T Consensus 391 ~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 391 G-NQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2 3444555555555556666666666555543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2e-18 Score=182.64 Aligned_cols=405 Identities=12% Similarity=0.056 Sum_probs=270.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++.-......+....|+.++|+.++.++....|.+.. ++..++.++.+.|++++|..+|+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~--------------~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPAR--------------GYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666677778889999999999999999875555544 688999999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
..|. ++..+..++.++...|++++|+..++++++..| +. +..+..++...|+.++|+..++++.+.. +.+...+..
T Consensus 78 ~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~ 155 (765)
T PRK10049 78 LEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTE 155 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7544 678888999999999999999999999999888 22 7778888889999999999999999985 556666777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCH
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNV------VTFSTLINAFC-----KEAKL---EKAFQLYNLMMEM-DLVPDL 283 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~~~~ 283 (619)
+...+...+..+.|.+.++.... .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 78888888999999988887653 2221 01112222221 11223 6677777777653 122222
Q ss_pred H-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHH
Q 047659 284 I-IYS----ILIDGLFKAGRLKEGNELLLTALDRGLK-LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP---NVI 354 (619)
Q Consensus 284 ~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 354 (619)
. .+. ..+..+...|++++|...|+.+.+.+.+ |+. .-..+...|...|++++|...|+++.+..... ...
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 1 111 1133445667888888888887776532 222 22224667778888888888888776542111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047659 355 SYSILIKGLCQQGRLVEACGLFGQVLIRRL-----------EPS---LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLK 420 (619)
Q Consensus 355 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 420 (619)
....+..++.+.|++++|...++.+..... .|+ ...+......+...|+.++|+.+++++... .
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 455566667778888888888887776521 112 112334455566666666666666666554 2
Q ss_pred CCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047659 421 PDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS 500 (619)
Q Consensus 421 ~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 500 (619)
|+ +...+..+...+...|++++|++.++...... +.+...+......+..
T Consensus 390 P~-----------------------------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 390 PG-----------------------------NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALD 439 (765)
T ss_pred CC-----------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHH
Confidence 33 44455566666666666666666666666543 2234444555555666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047659 501 QGSLSSAILLFFQMLKR 517 (619)
Q Consensus 501 ~g~~~~A~~~~~~~~~~ 517 (619)
.|++++|+.+++++++.
T Consensus 440 ~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 66666666666666653
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.3e-17 Score=172.69 Aligned_cols=329 Identities=11% Similarity=0.088 Sum_probs=190.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.|......+....++|+++.|++.|+.+.. |.++.....++.++...|+.++|+..+++++ +|.+....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~------- 103 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR------- 103 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH-------
Confidence 444444555555678888888888888886 5544444477788888888888888888888 33332211
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGL 188 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 188 (619)
....++..|...|++++|+++|+.+++..|. ++..+..++..+...++.++|++.++++.+..|+....++.++
T Consensus 104 -----~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 104 -----GLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 3344466788888888888888888887665 6777777888888888888888888888888884411133344
Q ss_pred H--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH-------HHH
Q 047659 189 L--RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN-------AFC 259 (619)
Q Consensus 189 ~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-------~~~ 259 (619)
. ..++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++...- |+..+-..... -.+
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHH
Confidence 4 3555555888888888875 556777777778888888887777665543 22211111100 001
Q ss_pred h---------cCC---HHHHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047659 260 K---------EAK---LEKAFQLYNLMMEM-DLVPDL-----IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVF 321 (619)
Q Consensus 260 ~---------~~~---~~~a~~~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 321 (619)
+ ..+ .+.|+.-++.+... +..|.. ....-.+-++...|++.++.+.++.+...+.+....+-
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0 111 12233333333321 111211 11112233444555555555555555555444344455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 322 SSVMDAYVGIGDVGRAVQTYDRMLNGG-----FLPNVISYSILIKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (619)
..+.++|...++.++|..+++.+.... .+++......|..++...+++++|..+++.+.+
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 555555555555555555555554321 111222234455555555555555555555544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=5.4e-17 Score=168.10 Aligned_cols=458 Identities=9% Similarity=-0.021 Sum_probs=334.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|..+.+...-+-+..++|+++.|+..|+++++.+|.+... ++ .++..+...|+.++|+..+++...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~a-------------v~-dll~l~~~~G~~~~A~~~~eka~~ 96 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQ-------------VD-DWLQIAGWAGRDQEVIDVYERYQS 96 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhh-------------HH-HHHHHHHHcCCcHHHHHHHHHhcc
Confidence 6677777788889999999999999999999998886431 33 788888899999999999999983
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.. ..+......++..+...|++++|+++|+++.+..| ++ +..++..+...++.++|++.++.+... .|+...+.
T Consensus 97 p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l 173 (822)
T PRK14574 97 SM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYM 173 (822)
T ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence 21 22344555557789999999999999999999999 33 777888999999999999999999887 45555554
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHH
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLII------YSILID 291 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~ 291 (619)
.++..+...++..+|++.++++.+..+. +...+..++.++.+.|-...|+++.+.-... +.+.... ....++
T Consensus 174 ~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 174 TLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHh
Confidence 4544554466666699999999987443 6777888889999999999998777654322 1111111 111111
Q ss_pred HHH-----hcCC---HHHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 292 GLF-----KAGR---LKEGNELLLTALDR-GLKL-DVVV----FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYS 357 (619)
Q Consensus 292 ~~~-----~~~~---~~~a~~~~~~~~~~-~~~~-~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (619)
.-. ...+ .+.|+.-++.+... +..| .... ..-.+-++...|++.++++.|+.+...+.+....+-.
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 110 1112 34455555555542 1112 2222 2244567778999999999999999988776777889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HhhHHHHHh
Q 047659 358 ILIKGLCQQGRLVEACGLFGQVLIRR-----LEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD-AVVCSLLIN 431 (619)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 431 (619)
.+..+|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.+.+. .|. ...+..
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~--- 406 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGL--- 406 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCC---
Confidence 99999999999999999999997653 1234444577889999999999999999999874 331 000000
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047659 432 GLMGDALRFFFQSVRMTLIPNLF-IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILL 510 (619)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 510 (619)
....+.||-. .+..++..+...|+..+|++.++.+.... +-|......+...+...|.+.+|+..
T Consensus 407 -------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 407 -------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred -------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0011223332 34456677788999999999999997664 67888888999999999999999999
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 511 FFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
++...... +-+..+......++...|++.+|..+.+.+.+. .|+..
T Consensus 473 ~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 473 LKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 97776542 334566778888888899999999999888874 34444
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=5.5e-17 Score=159.44 Aligned_cols=554 Identities=14% Similarity=0.065 Sum_probs=380.1
Q ss_pred ccCChh--hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH
Q 047659 28 SDLQFN--QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL 103 (619)
Q Consensus 28 ~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 103 (619)
..++|+ .+......+.-+|+.++|.+++..++. |.++.+|..++.++-+.|+.+++...+--+...+|++++
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---- 208 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---- 208 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----
Confidence 445553 233333344558999999999999987 999999999999999999999999999999999998887
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc-
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV- 180 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~- 180 (619)
.|..+.....+.|++..|.-+|.++++..|. +......-...|.+.|+...|.+-|.++....| |.
T Consensus 209 ----------~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 209 ----------LWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 8999999999999999999999999998655 667777788899999999999999999998887 22
Q ss_pred -----hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC--------
Q 047659 181 -----YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP-------- 246 (619)
Q Consensus 181 -----~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 246 (619)
-...++.+...++.+.|.+.++.....+ -..+...++.++..+.+..+++.|.............+
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 3344677778888899999999888742 24556678899999999999999998887776521111
Q ss_pred -------------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 247 -------------------NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--LVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 247 -------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
+... .-++-++...+..+...-+........ +.-+...|.-+..++...|.+++|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222 122233334444444444444455544 344567889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI---- 381 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 381 (619)
|..+......-+...|-.+..+|...|.++.|.+.|+...... +-+...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 9999987655578899999999999999999999999999863 33556667777888899999999999988542
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHhhH-----------------HHHHhc---
Q 047659 382 ----RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRG-----LKPDAVVC-----------------SLLING--- 432 (619)
Q Consensus 382 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~-----------------~~ll~~--- 432 (619)
.+..|+..........+.+.|+.++-..+...|+... +-|+..-- ..+..+
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 2344555555556667778888877666555554321 11110000 000000
Q ss_pred --c---HHHHH---HHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHh----hHHHHHHH
Q 047659 433 --L---MGDAL---RFFFQSVRMTLIPNL--FIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-KPDVI----THTVLIRG 497 (619)
Q Consensus 433 --~---~~~a~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~ 497 (619)
+ ...+. ..+......++..+. ..+.-++.++++.+++.+|+.+...+..... .-+.. .=...+.+
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 0 00000 001111111111111 2456778888999999999999987765321 11222 22345566
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCC--C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 498 IASQGSLSSAILLFFQMLKR-GLT--P-DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~-~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
.+..+++..|...++.|... +.. | -...|+..++.+.+.++-.--.+.+..+.......++.............|.
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence 77899999999999999875 211 2 2345565666666655543334444443332222223333333444566788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 574 LDAALKLFGQLTDRGLEPDIITYNTII 600 (619)
Q Consensus 574 ~~~A~~~~~~~~~~g~~p~~~~~~~ll 600 (619)
+..|+..+-+... ..||.+..+.+|
T Consensus 756 ~~~Al~~y~ra~~--~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 756 FKHALQEYMRAFR--QNPDSPLINLCL 780 (895)
T ss_pred hHHHHHHHHHHHH--hCCCCcHHHHHH
Confidence 9999998877766 578866666554
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.2e-15 Score=137.26 Aligned_cols=424 Identities=14% Similarity=0.122 Sum_probs=290.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--------------------------HHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--------------------------QYY 167 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------------~A~ 167 (619)
.-+.|++ ...+|.+.++.-+|++|...+.+.++.....+++.-+-.+... ..-
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4445554 4567899999999999999988888888777776544222211 111
Q ss_pred HHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 168 KLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+++-+.....+.++..++.++++-...++|.+++.+......+.+..+||.+|.+-.-... .++..+|......||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1333333333345889999999999999999999998888778899999999876544322 778888888888999
Q ss_pred hhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH----cCC----
Q 047659 248 VVTFSTLINAFCKEAKLEK----AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLK-EGNELLLTALD----RGL---- 314 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~---- 314 (619)
..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++.. .+..++.++.. ..+
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 5678888999999999999999999988887763 34444444442 222
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG----FLPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS 387 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 387 (619)
+-|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 2255677788888889999888888877666431 2222 23467778888888999999999999988888888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--
Q 047659 388 LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCR-- 465 (619)
Q Consensus 388 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 465 (619)
..+...++++..-.|.++-..+++.++...|...... -...++..+....+.|+...-..+-....+
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-----------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-----------LREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH-----------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 8999999999888999999999998888765332211 122333334444333432211112122111
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHhHHHHHHHHHccCChHH
Q 047659 466 LKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGL----TPDVITYSAIIHGLFKGKNISV 541 (619)
Q Consensus 466 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~ 541 (619)
..-.+.....-.++... .......+.+.-.+.+.|..++|.+++..+.+.+- .|......-+++.....++...
T Consensus 502 ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 11112222222334433 34455566667778888999999998888865432 2333334456666677788888
Q ss_pred HHHHHHHHHHCCCC
Q 047659 542 GLHMFKLMERNGVA 555 (619)
Q Consensus 542 A~~~~~~~~~~~~~ 555 (619)
|+..++.|...+..
T Consensus 580 A~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 580 AIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHHcCch
Confidence 88888888766443
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=7.7e-14 Score=132.44 Aligned_cols=540 Identities=12% Similarity=0.031 Sum_probs=300.1
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH-H-----------HH----Hh
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF-R-----------LF----RD 106 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~-----------~~----~~ 106 (619)
-+|...|.-+++.+.+ |.+++.|..-+++--..|.+..|+.+..+--+.-|.+.+.. . .+ ..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3466789999999998 99999999999999888988888888877776666655532 0 11 01
Q ss_pred hcCCCcccHHHHH---------------------------HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 107 SLGDFGCDYSFLI---------------------------ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 107 ~~~~~~~~~~~l~---------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
..|.+...|...+ .+.+...+.++|+-++.++.+- .+.+...|. +|++
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~dLwl----Alar 418 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSMDLWL----ALAR 418 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchHHHHH----HHHH
Confidence 1222222222221 1222233444444444444443 121333332 2334
Q ss_pred cCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCcchH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVI----QRGFVPNIVTCNKILKRLCINGQIGNA 232 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~A 232 (619)
..-|+.|..++.++.+.-| +. |....+.--.+|+.+...+++.+.+ ..|+..+...|..=...|-..|..-.+
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 4456666666666665555 32 5555555556666666666555433 235666666666666666666666666
Q ss_pred HHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 233 SSLFDVLLLVGPKP--NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
..+....+.-|+.. -..||+.-...|.+.+.++-|..+|....+- .+-+...|......--..|..+....+|++..
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 66666665544432 2345666666666667777777777666654 22244555555555555666666667777666
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047659 311 DRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLT 390 (619)
Q Consensus 311 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 390 (619)
..-.+ ....|.....-+-..||...|..++....+.. +-+...|-.-+.......+++.|..+|.+.... .|+...
T Consensus 578 ~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv 653 (913)
T KOG0495|consen 578 EQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERV 653 (913)
T ss_pred HhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchh
Confidence 65322 44455555555666677777777777666653 225556666666666677777777777666543 455555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047659 391 YSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGC 463 (619)
Q Consensus 391 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (619)
|..-+..---.+..++|.+++++..+. -|+-.-+ .++.+ .++.|...|..-.+. ++.....|-.|...-
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl-~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKL-WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHH-HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 555455444556677777777666654 3332221 22222 344444444332222 122334555566656
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 047659 464 CRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGL 543 (619)
Q Consensus 464 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (619)
-+.|++-+|..+++...-.+ +-+...|...|+.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-....
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHH
Confidence 66777777777777766554 556677777777777777777777777666653 2223334444444333333322222
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 047659 544 HMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD-IITYNTIICGYCSLN 607 (619)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~ 607 (619)
..+++. .-|+.+.-.+...+....++++|.+.|++..+. .|| -.+|..+..-+.+.|
T Consensus 808 DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 808 DALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhC
Confidence 222211 124444444444455555555555555555542 232 334444444444444
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.6e-14 Score=131.77 Aligned_cols=454 Identities=12% Similarity=0.051 Sum_probs=325.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
++++..|..+|+.++. ..+...|...+..-+++.....|+.++++++.. +|..++.|...+.+=
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--------------lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--------------LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--------------cchHHHHHHHHHHHH
Confidence 6667788888888887 777788888999999999999999999999886 455556788888777
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~ 200 (619)
-..|++..|.++|++..+ ..|+..+|.+.+..-.+.+..+.|.++|++.+-..|++ |...++.-.+.|+...|..+
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 788999999999999987 67899999999999999999999999999999888865 88888999999999999999
Q ss_pred HHHHHHC-C-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHH-------
Q 047659 201 HRQVIQR-G-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQL------- 270 (619)
Q Consensus 201 ~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~------- 270 (619)
++.+++. | -.-+...+.+....-.++..++.|.-+|.-.+++-++.. ...|..+...--+.|+.....+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9999886 2 011223344444444567788999999998887633322 34455555544556665544433
Q ss_pred -HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--------HHHHHcCCCHHHHHHH
Q 047659 271 -YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVV-VFSSV--------MDAYVGIGDVGRAVQT 340 (619)
Q Consensus 271 -~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------l~~~~~~~~~~~a~~~ 340 (619)
|+.+...+ +.|-.+|-..++.-...|+.+...++++.....-++.... .|.-. +-.-....|.+.+.++
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333433 3466778888888888899999999999988653322211 12111 1112356888899999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 341 YDRMLNGGFLPNVISYSILIKGL----CQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
|+...+. ++....||..+--.| .+..+...|.+++...+ |.-|...++...|..-.+.+.++.+..+++...+
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9888874 444556666554444 35678888888888776 4577888888888888888999999999988887
Q ss_pred cCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHH
Q 047659 417 RGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-IKPDVITHTVLI 495 (619)
Q Consensus 417 ~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~ 495 (619)
.+ |. +..+|......-...|+.+.|..+|.-..... .......|.+.|
T Consensus 466 ~~--Pe-----------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 466 FS--PE-----------------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred cC--hH-----------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 63 32 55666666666667888888888888776531 112234456666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-----ccC-----------ChHHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF-----KGK-----------NISVGLHMFKLMER 551 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 551 (619)
+.-...|.++.|..+|+++++. .+...+|-++..--. ..+ .+..|.++|+++..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666788888888888888875 334445554443222 223 45567777777654
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-14 Score=130.22 Aligned_cols=460 Identities=11% Similarity=0.071 Sum_probs=351.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc-hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV-YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~l~~~~~~ 190 (619)
.|...++-=..++++..|.++|++++..+. .+...|..-+..-.+..+...|..++++++..-| |- |...+-.--.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 566666666778899999999999998763 4888899999999999999999999999999888 33 7777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++..|.++|+.-.+- .|+...|++.+..-.+-+..+.|..+++...- +.|++.+|.-...--.+.|....+..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 89999999999999876 89999999999999999999999999999887 579999999999988999999999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHH--------
Q 047659 271 YNLMMEM-DL-VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVFSSVMDAYVGIGDVGRAVQ-------- 339 (619)
Q Consensus 271 ~~~m~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~-------- 339 (619)
|....+. |- .-+...+.+....-.++..++.|.-+|+-.++.-++. ....|..+...--+-|+......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9988764 11 1123345555555557788999999999888763321 14556655555555666443332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHH----HHHH----HHHhcCChHHHHH
Q 047659 340 TYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLL--TYS----SLID----GFCKSGKLRDGFS 409 (619)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~----~ll~----~~~~~~~~~~a~~ 409 (619)
-++.+.+.+ +-|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|. ..|+ .-....+.+.+.+
T Consensus 310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 234444442 457788888888888899999999999999876 333211 111 1122 1234678999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhc---------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLING---------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMG 480 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 480 (619)
+++...+. ++...+|+.-+--. ++..|.+++...+ |..|...+|...|..-.+.++++.+..+++...
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988873 44455666544322 7888999988877 456788889999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 481 MYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
+.+ +-|..+|......-...|+.+.|..+|+-+.+.. .......|-+.|+.-...|.++.|..+++++.+.. +...
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 886 6678888888888888999999999999998752 23345677788888888999999999999998852 3344
Q ss_pred HHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHh
Q 047659 560 IYNVLLNMLI-----KEC-----------NLDAALKLFGQLTD 586 (619)
Q Consensus 560 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 586 (619)
+|-.....-. ..| ....|..+|++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6655554433 334 56678888888764
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=1.7e-14 Score=142.30 Aligned_cols=331 Identities=15% Similarity=0.122 Sum_probs=262.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...++.+...|++++|..++.++++.+|..+. +|..|+..|-++|+.+++...+-.+....++ |.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~--------------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~ 207 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPI--------------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DY 207 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchh--------------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-Ch
Confidence 44556666779999999999999999998877 8999999999999999999999777776655 77
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH----HH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK----IL 220 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----ll 220 (619)
..|..+.....+.|++.+|.-.|.++++.+|+. ...-+..|-+.|+...|...|.++.....+.|..-... ++
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999933 66677888999999999999999999853333333333 34
Q ss_pred HHHHhcCCcchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------------
Q 047659 221 KRLCINGQIGNASSLFDVLLLV-GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV------------------- 280 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------------------- 280 (619)
+.+...++-+.|.+.++..... +-..+...++.++..+.+...++.+......+......
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 5566677779999998887752 22345667889999999999999999988888762222
Q ss_pred --------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 047659 281 --------PDLIIYSILIDGLFKAGRLKEGNELLLTALDRG--LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFL 350 (619)
Q Consensus 281 --------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (619)
++..+ -.+.-++.+....+....+.......+ +.-+...|..+..++...|.+..|+.+|..+.....-
T Consensus 368 ~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 22222 123334455556666666666666666 3445778889999999999999999999999987555
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 351 PNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 351 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
-+...|-.+..+|...|.+++|.+.|+.+....+. +...-..+...+.+.|+.++|.+.+..+.
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 57788999999999999999999999999877322 34455667778889999999999998876
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-16 Score=144.83 Aligned_cols=478 Identities=12% Similarity=0.127 Sum_probs=308.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHhhCCccc--------hHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV-QRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--------YEFL 184 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l 184 (619)
+...|++.|.......+|+..|+-+.+...-|+...+ ..+..++.+...+.+|++.|+-.+..-|++ .+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4556677788888899999999998887777776654 457778889999999999999888776622 5555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh--------hHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV--------TFSTLIN 256 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~l~~ 256 (619)
...+.+.|+++.|+.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+.....||.. .-..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56677899999999999998887 5776665556666667788889999999887542222221 1111222
Q ss_pred HHHhcCCH--------HHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047659 257 AFCKEAKL--------EKAFQLYN---LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM 325 (619)
Q Consensus 257 ~~~~~~~~--------~~a~~~~~---~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 325 (619)
--.++..+ ..|.+..- .+..--+.|+-. .| .+-+.+.++.-.-..+..+. --.-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hhhHH
Confidence 11111111 11111111 111111111110 00 11122222211111000000 01112
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG-LC-QQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGK 403 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 403 (619)
.-+.+.|+++.|.+++.-..+..-+.-...-+.|-.. |. -..++..|.++-+........ +......-.+.-..+|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 3466788888888888777665322222222222222 22 234566666666655433111 22222112222334678
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHhc----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 404 LRDGFSLYDNMIKRGLKPDAVVCSLLING----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLM 479 (619)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 479 (619)
+++|...+++.....-......|+.-+.. .+++|+..|-.+...- ..+..+.-.+...|-...++..|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888887765333333333333322 7777877776554321 126677778888999999999999999877
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 480 GMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
... ++.|+.....|...|-+.|+-..|.+.+-+--. -++-|..+..++..-|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 654 467888999999999999999999988766554 3567889999999999999999999999998865 689999
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcccccch
Q 047659 560 IYNVLLNMLI-KECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLIDGY 614 (619)
Q Consensus 560 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 614 (619)
-|..++..|. +.|++++|.++++...++ ++-|...+..|++.+..+|-+...++
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d~key 715 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEY 715 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchhHHHH
Confidence 9999987775 589999999999999864 78899999999999999998876654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=4.1e-13 Score=127.61 Aligned_cols=501 Identities=11% Similarity=0.005 Sum_probs=391.3
Q ss_pred CCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 46 NNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 46 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
.+...=..+++.+++ |.+...|... ....+.+.|+-++.++++--|.+.+ |..+|.
T Consensus 360 ~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~d------------------LwlAla 417 (913)
T KOG0495|consen 360 SDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSMD------------------LWLALA 417 (913)
T ss_pred hHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchHH------------------HHHHHH
Confidence 344445667777776 6665655543 4456777799999999998775544 445566
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh----hCCc----cchHHHHHHHHhcCCHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR----GKGF----CVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~ 195 (619)
+..-++.|..+++...+. ++.++..|..-...--.+|+.+...+++.+.+ ..|. +.|..-...|-..|.+-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 778889999999999887 55699999999988889999999888887743 2333 22777778888889999
Q ss_pred HHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
.+..+....+..|+.- -..+|..-...|.+.+.++-|+.+|...++-- +.+...|......--..|..++...+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999988887543 34588888899999999999999999988753 33667787777777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV 353 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 353 (619)
....- +-....|......+-..|+...|..++....+.... +...|-.-+..-..+.+++.|..+|.+.... .|+.
T Consensus 576 av~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 98863 335566777777888899999999999999988655 7888999999999999999999999998875 5777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHHHh
Q 047659 354 ISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV-VCSLLIN 431 (619)
Q Consensus 354 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~ 431 (619)
..|..-+...--.+..++|.+++++.++. .|+ ...|-.+.+.+.+.++.+.|...|..-.+. -|... .|..+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHH
Confidence 88877777777789999999999998876 444 346777888899999999999888765443 34333 3333322
Q ss_pred c-----cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047659 432 G-----LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSS 506 (619)
Q Consensus 432 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 506 (619)
. .+-.|..+++...-.++. +...|-..|.+-.+.|+.+.|..+..+..... +.+...|..-|....+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchH
Confidence 2 677889999988877655 78899999999999999999999988776552 5566778887877777666544
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
....+++. .-|.+....+...+....+++.|.+.|.+.++.+. .+..+|..+...+.+.|.-++-.+++.+...
T Consensus 806 s~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 806 SIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 44444433 44777788888889999999999999999998642 2566888899999999998999999998876
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.1e-14 Score=126.95 Aligned_cols=434 Identities=14% Similarity=0.127 Sum_probs=291.3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHh--cCCHHHH-HHHHHHHHHCCCCCChhhHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLR--KGVIENA-FHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~--~~~~~~A-~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+.+-+.++.. ..+|...++.-+|+.|...+.++ -..+++..+. ..++--| .+.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455555554 35788889999999999988744 3344443332 2232222 23444444444 3444444
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL 299 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 299 (619)
+.|.+.+ ++-+. .+.+..++.++|.++++.-..+.|.++|++......+.+..+||.+|.+-.-..
T Consensus 191 -----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred -----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 2333322 33333 244778999999999999999999999999988888889999999988754332
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 047659 300 KEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR----AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVE-ACG 374 (619)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~ 374 (619)
..+++.+|......||..|||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 27788999999999999999999999999998764 45778889999999999999999999988887754 444
Q ss_pred HHHHHHHC----CCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCH---hhHHHHHhc-----cH
Q 047659 375 LFGQVLIR----RLE---P-SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRG----LKPDA---VVCSLLING-----LM 434 (619)
Q Consensus 375 ~~~~~~~~----~~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~-----~~ 434 (619)
++.++... ..+ | +...+...+..|.+..+.+-|.++..-+.... +.|+. +-|..+... ..
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 122 2 44556777888888888888888776654321 12221 112222221 66
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CH--------H
Q 047659 435 GDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQG-SL--------S 505 (619)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~ 505 (619)
+.....++.+.-.-..|+..+...++.+..-.|.++-.-++|..+...|..-+...-..++..+++.. +. .
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~ 494 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ 494 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 77777888888877788888888888888889999988999988888775555555444555555433 11 1
Q ss_pred H-----HHHHH-------HHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-C---cCHHHHHHHHHHHH
Q 047659 506 S-----AILLF-------FQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGV-A---PDIAIYNVLLNMLI 569 (619)
Q Consensus 506 ~-----A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~ 569 (619)
. |..++ .++.+.. ......+.+.-.+.+.|+.++|.+++..+.+.+- - |......-+++...
T Consensus 495 ~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~ 572 (625)
T KOG4422|consen 495 VAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK 572 (625)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence 0 11111 2233333 3444567777778999999999999999866432 2 33334446677778
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 570 KECNLDAALKLFGQLTDRGLEPDIITYNTIICGY 603 (619)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 603 (619)
+..++-.|...++-|...+...-...-+.+...|
T Consensus 573 ~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 573 VSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred hcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 8899999999999998765443333444444433
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.5e-14 Score=131.25 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=187.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK--AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDV 334 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 334 (619)
-+.++|+++.|.++++.+.+.+-+.-...-+.|-..+.- -.++..|...-+.....+ .-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 456788888888888877765333222222222222222 235556665555554332 11333333333344567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047659 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM 414 (619)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 414 (619)
++|.+.|++.....-.-....|+ +.-.+-..|+.++|++.|-++..- +.-+..+...+.+.|....+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888887653222222222 222455678888888887666432 1225556666777777777777777777554
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVL 494 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 494 (619)
.. +.|+ |+.+.+.|.+.|-+.|+-..|.+.+-.--.. ++-+..+...|
T Consensus 585 ~s--lip~-----------------------------dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 585 NS--LIPN-----------------------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred cc--cCCC-----------------------------CHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 33 3443 7788899999999999999998876544333 36688888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 495 IRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF-KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 495 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
..-|....-+++++.+|++..- +.|+..-|..++..|. +.|++..|..+++..-+. ++-|..++.-|++.+...|-
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8889999999999999998764 5899999999888775 679999999999998775 66688899999998887774
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=6.1e-14 Score=137.80 Aligned_cols=291 Identities=9% Similarity=-0.044 Sum_probs=170.6
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+......|+++.|.+.+.+..+..|.+.- .+...+.++.+.|+++.|.+.++++.+..+.++....
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~~--------------~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPVL--------------NLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 34556778888888888877776554332 4556677777888888888888887765444333344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHH---
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN-KILKRL--- 223 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~--- 223 (619)
......+...|+++.|...++.+.+..| ++ +..+...+...|+++.|.+.+..+.+.+.. +...+. .-...+
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 4457777788888888888888888777 33 667777778888888888888888777533 222221 111111
Q ss_pred HhcCCcchHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH--HHhcC
Q 047659 224 CINGQIGNASSLFDVLLLVGPK---PNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY-SILIDG--LFKAG 297 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~--~~~~~ 297 (619)
...+..++..+.+..+....+. .+...+..+...+...|+.++|.+++++..+.. ||.... ..++.. ....+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCC
Confidence 2222223333344444433221 255666666677777777777777777776642 222210 001111 12235
Q ss_pred CHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDV--VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGL 375 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 375 (619)
+.+.+.+.++...+.... |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 314 ~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555666666555544222 33 444556666666666666666666322222345666666666666666666666666
Q ss_pred HHHH
Q 047659 376 FGQV 379 (619)
Q Consensus 376 ~~~~ 379 (619)
+++.
T Consensus 393 ~~~~ 396 (409)
T TIGR00540 393 RQDS 396 (409)
T ss_pred HHHH
Confidence 6654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=3.1e-13 Score=131.97 Aligned_cols=253 Identities=9% Similarity=0.023 Sum_probs=107.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
..+..+.|+++.|.+.++++.+..+.+...........+...|+++.|...++++.+.+| ++ ...+...|.+.|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 334455666666666666665533221112222234555556666666666666555555 22 555555555555555
Q ss_pred HHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIV-------TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
+|.+++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555555554221111 1111111111222222222222222211 1223334444444444444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+++++..+. +|+.... ++.+....++.+++.+..+...+..+. |+.....+...+.+.+++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 444444432 2222111 111122234444444444444433222 3334444444444444444444444444442
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
.|+...+..+...+.+.|+.++|.+++++.
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=7.4e-15 Score=140.23 Aligned_cols=271 Identities=14% Similarity=0.032 Sum_probs=213.2
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH------------------
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR------------------ 102 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------ 102 (619)
..+-+..+|+..|..++. .+..++...+++.|...+++++|++.|+.+.+..|.-.+.+.
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 346678899999999776 777788889999999999999999999999998885444321
Q ss_pred --HHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 103 --LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 103 --~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
-+...-|..+.+|.+++.+|.-+++++.|+.+|+++++.++. ...+|+.+..-+.....+|.|...|+.++..+|
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 122335667778888888888888888888888888886543 567778888888888888888888888888888
Q ss_pred -cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047659 179 -CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINA 257 (619)
Q Consensus 179 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (619)
+.|..+...|.+.++++.|+-.|+.+++.+ +.+......+...+.+.|+.++|+++++++...+++ |+..--..+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 448888888888888888888888888876 666667777778888888888888888888876554 55555556667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047659 258 FCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD 317 (619)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 317 (619)
+...+++++|++.++++++. ++-+...|..+.+.|.+.|+.+.|+.-|.-+.+.++++.
T Consensus 567 l~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 77788888888888888875 333566777788888888888888888887777654433
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2.6e-13 Score=118.09 Aligned_cols=271 Identities=15% Similarity=0.156 Sum_probs=138.1
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIE 120 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (619)
+-.+++++|.++|-.+.+ +.+.++...+++.+.+.|..|.|+.+.+..+..-.-+.+ . ..+ +...|++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~-q----r~l-----Al~qL~~ 115 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE-Q----RLL-----ALQQLGR 115 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH-H----HHH-----HHHHHHH
Confidence 335566666666666665 444455556666666666666666665555543221111 0 000 4445556
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--------hHHHHHHHHhcC
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--------YEFLMNGLLRKG 192 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 192 (619)
-|...|-++.|.++|..+.+.+ ..-..+...++.+|....+|++|++.-+++.+.+++. |..+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 6666666666666666665432 2244555666666666666666666666666555522 333444444455
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+++.|..++.+..+.+ +..+.+--.+.+.+...|+++.|++.++.+.+.++.--..+...|..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5566666666655553 333444444445555556666666666665554443334445555555556666655555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
.+.+.... ...-..+........-.+.|...+.+-... +|+...+..++....
T Consensus 274 ~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 274 RAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 55543222 222222222222223333344333333333 345555555555443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=4.1e-13 Score=131.17 Aligned_cols=281 Identities=10% Similarity=-0.002 Sum_probs=224.4
Q ss_pred ccCCchhHHHHHHHhhc-CCCCccHHHH-HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN-CVSSPNIAQL-IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
-.|+++.|.+.+..... .+++..+..+ +....+.|+++.|...++++.+..|++... .....+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~-------------~~l~~a~l 162 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP-------------VEITRVRI 162 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH-------------HHHHHHHH
Confidence 37999999999998776 3445555444 555589999999999999999887765321 22344788
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc----------hHHHHHHHHh
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV----------YEFLMNGLLR 190 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----------~~~l~~~~~~ 190 (619)
+...|+++.|...++++.+..|. ++.....+...|.+.|++++|.+++..+.+... +. |..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998766 889999999999999999999999999998776 21 2223333334
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
..+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+.. ..++.+....++.+++++.
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHH
Confidence 55566666777776554 2568888899999999999999999999999874 33442 1233444466999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 271 YNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 271 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
.+...+.... |...+..+.+.|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 317 ~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999887433 6778889999999999999999999999986 68889999999999999999999999987654
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=4.2e-13 Score=116.84 Aligned_cols=222 Identities=15% Similarity=0.122 Sum_probs=124.0
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC---HHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS---PDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 152 (619)
-.++.++|..+|-.+++.+|.+.+ +..+|+..|.+.|.++.|+++.+.+.++.-.+. ..+...
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e--------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFE--------------AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhH--------------HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 356677777777777777666666 666777777777777777777777765421111 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHh
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV----TCNKILKRLCI 225 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~ 225 (619)
+.+-|...|-+++|..+|..+...+. .....++..|-...++++|+++.+++.+.+..+... .|--+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 55566666666666666666655443 225566666666666666666666655554222211 12223333334
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
..+.+.|..++.+..+.+++ .+..-..+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555666666665554222 22333334455555666666666666665554443344555555666666666666666
Q ss_pred HHHHHHc
Q 047659 306 LLTALDR 312 (619)
Q Consensus 306 ~~~~~~~ 312 (619)
+..+.+.
T Consensus 272 L~~~~~~ 278 (389)
T COG2956 272 LRRAMET 278 (389)
T ss_pred HHHHHHc
Confidence 6555554
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=3.1e-13 Score=132.80 Aligned_cols=290 Identities=12% Similarity=0.022 Sum_probs=219.7
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....|+++.|.+.+..... |.....+...+.++.+.|+++.|.+.++++.+..|.+.-. +....+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~-------------~~~~~a 160 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL-------------VEIART 160 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH-------------HHHHHH
Confidence 3569999999999998886 3334455677888999999999999999998876654210 344568
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hH----HHHHHHHhcC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YE----FLMNGLLRKG 192 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~----~l~~~~~~~~ 192 (619)
..+...|+++.|.+.++.+.+..|. ++..+..+...+.+.|++++|.+.+..+.+.+. +. +. .........+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998766 788999999999999999999999999998865 22 21 1222223333
Q ss_pred CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHH
Q 047659 193 VIENAFHMHRQVIQRGF---VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTF-STLINAFCKEAKLEKAF 268 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~ 268 (619)
..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 33444445555555421 247888999999999999999999999999986443222111 11222233457788899
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 269 QLYNLMMEMDLVPDL--IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 320 ~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888775322 44 567788999999999999999999655544578888899999999999999999999997643
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.65 E-value=4e-10 Score=107.52 Aligned_cols=466 Identities=11% Similarity=0.136 Sum_probs=285.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
-.-++.|......+..+|+...-+..|++++..-|.+.. +.+|...+......|-++-++.++++.++
T Consensus 99 HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH------------~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 99 HKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQH------------DRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred hcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhh------------ccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 467788888888899999999999999999988775533 12777888888888889999999999976
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------cc---hHHHHHHHHhcCCHHH---HHHHHHHHHHC
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-------CV---YEFLMNGLLRKGVIEN---AFHMHRQVIQR 207 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~---~~~l~~~~~~~~~~~~---A~~~~~~~~~~ 207 (619)
. +|..-..-+..+++.+++++|.+.+...+.... +. |..+....+++-+.-. ..++++.++..
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 4 444567778888899999999999988765432 11 5555444444433222 22344444433
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------C
Q 047659 208 GFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA----------------------K 263 (619)
Q Consensus 208 ~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~ 263 (619)
-+| ...|..|.+.|.+.|.+++|.++|++.... .....-|..+.++|+... +
T Consensus 243 --ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 243 --FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred --CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 233 357888999999999999999999988754 223444555555554321 1
Q ss_pred HHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDL-----------VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL------DVVVFSSVMD 326 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~ 326 (619)
++-...-|+.+.+.+. +.+...|..-+. ...|+..+-...+.++.+. +.| -...|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 2222333333332210 112223332222 2245566666666666643 111 2346778888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------C
Q 047659 327 AYVGIGDVGRAVQTYDRMLNGGFLPN---VISYSILIKGLCQQGRLVEACGLFGQVLIRRLE-----------------P 386 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~ 386 (619)
.|-..|+++.|..+|++..+...+-- ..+|......=.+..+++.|.++++....-... .
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 89999999999999999887643322 345666666667788889999888876532111 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--HHHHHhc--cHHHHHHHHHHHHhCCCCCCH-hhHHHHHH
Q 047659 387 SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVV--CSLLING--LMGDALRFFFQSVRMTLIPNL-FIFNTLMD 461 (619)
Q Consensus 387 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~--~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 461 (619)
+...|...+..--..|-++....+++.+....+...... |..++.. .++++.+++++-+..-.-|+. ..|++.+.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 233455555555567788888888888887654332222 3333332 677888888776654444444 46666666
Q ss_pred HHHh---cCChhHHHHHHHHHhhCCCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHH
Q 047659 462 GCCR---LKRATDTVKLFMLMGMYNIKPDVITHTVLI--RGIASQGSLSSAILLFFQMLKRGLTPD--VITYSAIIHGLF 534 (619)
Q Consensus 462 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 534 (619)
-+.+ ...++.|..+|++..+ |.+|...-+.-|+ ..--..|-...|+.+|+++.. ++++. ..+|+..|.-..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaa 633 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAA 633 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 5554 2357888899988887 4444332222222 112235777778888887654 33332 234555554333
Q ss_pred ccCChHHHHHHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMER 551 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~ 551 (619)
..=-+.....+++++.+
T Consensus 634 e~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 634 EIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHhCCcccHHHHHHHHH
Confidence 32223334444444444
No 45
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.65 E-value=3.6e-10 Score=107.88 Aligned_cols=538 Identities=12% Similarity=0.075 Sum_probs=355.6
Q ss_pred HHhhccccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHH
Q 047659 10 TVWRSINKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASH 85 (619)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (619)
.+|..+++|+-..+..-.+ =|..-..-+..+.++|+...-...|+.++. ....+.|...+.-....|-++.+..
T Consensus 82 ~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r 159 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR 159 (835)
T ss_pred hHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH
Confidence 3455556554333322111 233333444556779999999999998876 4456788888888899999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC------CCCCHHhHHHHHHHHHh
Q 047659 86 VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG------IYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 159 (619)
.|++.++-.|.. ...-+..+...+++++|.+.+...+... .+.+-..|..+.....+
T Consensus 160 vyrRYLk~~P~~-----------------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 160 VYRRYLKVAPEA-----------------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred HHHHHHhcCHHH-----------------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHh
Confidence 999999987764 4466778889999999999998885321 22356677777777765
Q ss_pred cCCh---hHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----
Q 047659 160 SNSV---GQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING----- 227 (619)
Q Consensus 160 ~~~~---~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----- 227 (619)
..+. -....+++....+.+|- |.+++..|.+.|.+++|..++++.+.. ..+..-|+.+.+.|+.-.
T Consensus 223 ~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~ 300 (835)
T KOG2047|consen 223 NPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVA 300 (835)
T ss_pred CcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHH
Confidence 5443 23455666666666643 999999999999999999999999887 455666666666655321
Q ss_pred -----------C------cchHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047659 228 -----------Q------IGNASSLFDVLLLVGP-----------KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDL 279 (619)
Q Consensus 228 -----------~------~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 279 (619)
+ ++....-|+.+....+ +.++..|..-+.. ..|+..+-...|.++... +
T Consensus 301 ~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 301 AKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-c
Confidence 1 2223333444433211 1133344443333 356777788888887764 3
Q ss_pred CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--
Q 047659 280 VPD------LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG-- 348 (619)
Q Consensus 280 ~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-- 348 (619)
.|. ...|..+.+.|-..|+.+.|..+|++......+-- ..+|..-...-.+..+++.|+++.+......
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 332 34678888999999999999999999987654422 3455556666677888999999888776431
Q ss_pred ---------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 349 ---------FLP------NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 349 ---------~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
.++ +...|...+..--..|-++....+++.+.+..+. ++.........+-.+.-++++.+++++
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 111 2234455555555578888999999999887655 333222223334455667888888877
Q ss_pred HHHcCCCCCHh-hHHHHHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHhhC
Q 047659 414 MIKRGLKPDAV-VCSLLING--------LMGDALRFFFQSVRMTLIPNLFIFNTL--MDGCCRLKRATDTVKLFMLMGMY 482 (619)
Q Consensus 414 ~~~~~~~~~~~-~~~~ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~ 482 (619)
-+..-.-|... .|+..+.. .++.|..+|++..+ +.+|...-+--| ...--+.|-...|+.++++....
T Consensus 537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 65543334433 34444432 89999999999998 444443222111 11122468888999999987543
Q ss_pred CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH---HHHHHHHHccCChHHHHHHHHHHHH-CCCCc
Q 047659 483 NIKPD--VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY---SAIIHGLFKGKNISVGLHMFKLMER-NGVAP 556 (619)
Q Consensus 483 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 556 (619)
+++. ...||..|.-....=-+.....+|+++++. -|+...- .-..+.-.+.|.++.|..++....+ .....
T Consensus 616 -v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 616 -VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 3333 346888876655544566678888888875 5665433 3344455678999999999988776 34555
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 047659 557 DIAIYNVLLNMLIKECNLDA 576 (619)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~ 576 (619)
+...|.+.=..-.+.|+-+.
T Consensus 693 ~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred ChHHHHHHHHHHHhcCCHHH
Confidence 77889999888999999433
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=7.2e-16 Score=143.94 Aligned_cols=254 Identities=15% Similarity=0.129 Sum_probs=81.4
Q ss_pred HHHHHHHccCCchhHHHHHHHhh-c---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTH-N---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+...+.+.|++++|+++++... . +.++..|..++.+....++++.|+..|++++..++.++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~------------- 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ------------- 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------
Confidence 44555667788888888885432 2 456666777777777788888888888888776655444
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc--hHHHHHH
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV--YEFLMNG 187 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~l~~~ 187 (619)
.+..++.. ...+++++|.++++...+.. +++..+...+..+.+.++++++.++++.+..... +. |......
T Consensus 80 -~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 80 -DYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred -cccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 55566665 67778888887777766542 3556666777777777777777777777654331 22 5556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+.+.|+.++|++.++++++.. +.|....+.++..+...|+.+++.++++...... +.|+..+..+..++...|+.++|
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence 666777777777777776663 3345566666666666666666666666665542 33445556666666666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
+..|+....... .|+.+...+..++...|+.++|.++.++..
T Consensus 234 l~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 234 LEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccc
Confidence 777766665422 256666666666666666666666665543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.8e-11 Score=109.96 Aligned_cols=326 Identities=11% Similarity=0.036 Sum_probs=171.5
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhh-HHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN-IVT-CNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~-~~~l 219 (619)
.|+..+...+.++.+.|....|+..|...+...|-. |..+..... +. +........+ +.| ... --.+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~----e~~~~l~~~l-~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DI----EILSILVVGL-PSDMHWMKKFFL 233 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hH----HHHHHHHhcC-cccchHHHHHHH
Confidence 355555555566666666667777666666655522 333322221 11 2222222211 111 111 1112
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV--PDLIIYSILIDGLFKAG 297 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~ 297 (619)
..++....+.+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+.++- -|..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3344444455566655555655555444433333444444566667777777666665211 14455555542 2222
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFG 377 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 377 (619)
+.. +..+.+-.-.--+--+.|+..+.+.|+-.++.+.|...|+...+.+ +.....|+.+.+-|...++...|++-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111110011233455556666666666667777776666653 2244556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHH
Q 047659 378 QVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFN 457 (619)
Q Consensus 378 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (619)
.+.+-.+. |...|-.+.++|.-.+.+.=|+-.|++..+. +|+ |...|.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPn-----------------------------DsRlw~ 436 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPN-----------------------------DSRLWV 436 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCC-----------------------------chHHHH
Confidence 66655322 5556666666666666666666666665553 343 566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLK 516 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 516 (619)
+|..+|.+.++.++|++.|+.....| ..+...+..+...|-+.++.++|...|++.++
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666666666666666666666554 33445666666666666666666666665544
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.2e-15 Score=142.34 Aligned_cols=256 Identities=15% Similarity=0.126 Sum_probs=59.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhc--CCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQF--GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
.++.++.+.|++++|.+.+++.+... |.+.+ .|..++..+...++++.|.+.++++...+.. +
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~--------------~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~ 77 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPE--------------YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-N 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc--------------ccccccccccccccccccccccccccccccc-c
Confidence 34555555555555555554443322 22222 4444445555555555555555555544333 3
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRL 223 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~ 223 (619)
+..+..++.. ...+++++|.++++...+..+++ +...+..+...++++++.++++.+.... .+.+...|..+...+
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 4444444444 45555555555554443333322 4444444445555555555555444321 123344444444444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGN 303 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 303 (619)
.+.|+.++|.+.+++..+..|. |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence 5555555555555555443221 34444444444445555554444444444331 223333444444444555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 304 ELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
.++++..+.... |+.+...+..++...|+.++|.++..+
T Consensus 235 ~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 235 EYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHSTT--HHHHHHHHHHHT--------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccc
Confidence 555554443221 444444444555555555555444443
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.9e-12 Score=115.91 Aligned_cols=429 Identities=11% Similarity=0.039 Sum_probs=252.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLL 189 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~ 189 (619)
.+-..+.-|.+.|++++|+++|...++. .|+ +..|.....+|...|+|++.++-..+.++.+|+- +..-.+++-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 4556677889999999999999999985 455 7888999999999999999999999999999943 777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh-CC--CCCChhhHHHHHHHHHhcCCHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL-VG--PKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
..|++++|+.=..-.--.+--.|..+--.+=+.+- ..|..-.++-.+ .+ .-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~---- 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP---- 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc----
Confidence 99999888753332221111112211111111111 122222222222 11 1233333333333321100
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH----h-cCCHHHHHHHHHHHHHcC-CC-----CC------HHHHHHHHHHHH
Q 047659 267 AFQLYNLMMEMDLVPDLIIYSILIDGLF----K-AGRLKEGNELLLTALDRG-LK-----LD------VVVFSSVMDAYV 329 (619)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~-~~~~~~a~~~~~~~~~~~-~~-----~~------~~~~~~ll~~~~ 329 (619)
......+.......+..++. . ...+..+.+.+.+-.... .. .| ..+.......+.
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00000000011111111110 0 011222222222211100 00 01 111111122234
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 047659 330 GIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFS 409 (619)
Q Consensus 330 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 409 (619)
-.|+.-.+.+-|+........++ ..|-.+..+|....+.++-.+.|.+..+.+.. ++.+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 56788888888888887643322 22667777788888888888888888876544 45556555666666677888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
-|+..+.. .|. +...|-.+..+.-+.+++++++..|++..+. ++..+.
T Consensus 416 DF~Kai~L--~pe-----------------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E 463 (606)
T KOG0547|consen 416 DFQKAISL--DPE-----------------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE 463 (606)
T ss_pred HHHHHhhc--Chh-----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence 88777664 333 4455555666666777888888888887765 355667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HH--hHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-------VI--TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
.|+.....+...++++.|.+.|+..++. .|+ .. +.-.++- +.-.+++..|.++++...+.+.+ ....
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A 539 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQA 539 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHH
Confidence 7888888888888888888888887763 222 11 1111221 12347888888888888775322 4457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
|..|...-...|+.++|+++|++.... ..|-.-++++|+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHHH
Confidence 788888888888888888888886642 344444555443
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.3e-11 Score=110.36 Aligned_cols=365 Identities=13% Similarity=0.088 Sum_probs=275.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh-------------cCCCcc--cHHHHHHHHHHc
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS-------------LGDFGC--DYSFLIENYVRI 125 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~l~~~~~~~ 125 (619)
..+.......+-++...|....|+..|...+...|..|.++..+... .+.... .-.-+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 44445556677788899999999999999999999988876443322 111110 112344566667
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc------cchHHHHHHHHhcCCHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------CVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 199 (619)
...+++++-.+.....|.+.++..-+..+.+.-.+.+++.|+.+|+++.+.+| |.|..++-. +..+-..+ -
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs-~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLS-Y 317 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHH-H
Confidence 78889999999999988877777778888888889999999999999999998 225554332 22222111 1
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDL 279 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 279 (619)
+.......+ +-.++|+..+.+.|+-.++.++|...|+..++.++. ....|+.+.+-|....+...|.+-|+...+-+.
T Consensus 318 LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 318 LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 111222222 445677888889999999999999999999987544 577899999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 280 VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSIL 359 (619)
Q Consensus 280 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 359 (619)
. |-..|-.|.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|.+.|......|-. +...+..+
T Consensus 396 ~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 396 R-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred h-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 4 8899999999999999999999999999987544 8999999999999999999999999999987633 66889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhcc
Q 047659 360 IKGLCQQGRLVEACGLFGQVLIR----R-LEPSL-LTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGL 433 (619)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 433 (619)
...|-+.++.++|...|++..+. | ..|.. ...--+...+.+.+++++|.......... .+ .
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~-----------e 539 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET-----------E 539 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc-----------h
Confidence 99999999999999999887653 2 22211 22233556777889999988766655443 22 2
Q ss_pred HHHHHHHHHHHHh
Q 047659 434 MGDALRFFFQSVR 446 (619)
Q Consensus 434 ~~~a~~~~~~~~~ 446 (619)
.++|..+++++..
T Consensus 540 ~eeak~LlReir~ 552 (559)
T KOG1155|consen 540 CEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666654
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.4e-12 Score=117.46 Aligned_cols=396 Identities=12% Similarity=0.071 Sum_probs=241.7
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCC-CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVS-SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+......+.++|++++|+++|.++++ +++ +..|...+.+|...|+|++..+.-.++++.+|+...
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~K------------- 184 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVK------------- 184 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHH-------------
Confidence 44455566789999999999999999 444 788888999999999999999999999998887655
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHH------------------HHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCR------------------AMR 174 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------~~~ 174 (619)
++..-..++-+.|++++|+.=..-..-.+.-.|..+--.+=+.+-+.+. ..+.+-+. ...
T Consensus 185 -Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 185 -ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred -HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 3444445555556655554322211111100011110000011100000 00000000 000
Q ss_pred hC------Cc-c-chHHHHHHHH--hcC---CHHHHHHHHHHHHHCC---CCCC---------hhhHHHHHHHHHhcCCc
Q 047659 175 GK------GF-C-VYEFLMNGLL--RKG---VIENAFHMHRQVIQRG---FVPN---------IVTCNKILKRLCINGQI 229 (619)
Q Consensus 175 ~~------~~-~-~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~---~~~~---------~~~~~~ll~~~~~~~~~ 229 (619)
.. ++ + ....+...+. ..+ .+..|.+.+.+-.... ...+ ..+.......+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 00 00 0 0111111111 111 2333333332221110 0111 12222222334457888
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTA 309 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 309 (619)
-.|..-|+..+...+.++ ..|.-+...|...++.++..+.|......+.. ++.+|..-.....-.+++++|..-|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998887654433 23777778888888999999999988887654 6677777777777788889999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----
Q 047659 310 LDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE---- 385 (619)
Q Consensus 310 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---- 385 (619)
....+. +...|..+.-+..+.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 877544 5666777777777888899999999988876 5667788888888899999999999999888765211
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 047659 386 ---PSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDG 462 (619)
Q Consensus 386 ---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (619)
+.+.+-.+++..- =.+++..|..++....+.. |. ....|.+|...
T Consensus 499 ~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D--pk-----------------------------ce~A~~tlaq~ 546 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD--PK-----------------------------CEQAYETLAQF 546 (606)
T ss_pred cccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC--ch-----------------------------HHHHHHHHHHH
Confidence 1111111121111 1266667777776666542 21 44578888888
Q ss_pred HHhcCChhHHHHHHHHHhh
Q 047659 463 CCRLKRATDTVKLFMLMGM 481 (619)
Q Consensus 463 ~~~~~~~~~a~~~~~~~~~ 481 (619)
-.+.|+.++|+++|++...
T Consensus 547 ~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999999999987643
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.8e-13 Score=128.09 Aligned_cols=288 Identities=15% Similarity=0.070 Sum_probs=193.9
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQR 152 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 152 (619)
.-+=+..+|...|++..++..++.- +...++.+|...+++++|..+|+.+.+..+- .+.+.|..
T Consensus 330 ~s~y~~~~A~~~~~klp~h~~nt~w--------------vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSHHYNTGW--------------VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHHHHHhhHHhcCCchH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH
Confidence 3445677788888886666555432 6777888888888888888888888765432 24556666
Q ss_pred HHHHHHhcCChhHHHHHH-HHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047659 153 LMSCLVDSNSVGQYYKLC-RAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ 228 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~-~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 228 (619)
.+.-+. -+-++..+ +.+.+.++ ++|-.+..+|.-.++.+.|++.|+++++.+ +....+|+.+..-+.....
T Consensus 396 ~LWHLq----~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 396 TLWHLQ----DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHH----hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHH
Confidence 665542 12333333 33444444 348888888888888888888888887774 4467777777777777778
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
+|.|...|...+...+. +-..|.-+...|.+.++++.|+-.|+.+.+-+.. +.+....+...+.+.|+.++|++++++
T Consensus 471 ~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHhHHHHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 88888888877543211 2334444566777888888888888877775433 556666666777777888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 309 ALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
+...+.+ |+..--.....+...+++++|+..++++++. ++.+...+..+...|-+.|+.+.|+.-|..+.+...+
T Consensus 549 A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 549 AIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 7776544 5555555556666777888888888887775 2334555666777777778888887777777665443
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.9e-11 Score=106.00 Aligned_cols=448 Identities=12% Similarity=0.103 Sum_probs=253.6
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIEN 196 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~ 196 (619)
.-+....++..|+.+++--...+-+-...+-..+..++...|++++|...|..+..... +. +..+.-++.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34556678888888888776544332334455566777788888888888888665443 32 6677777777888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
|..+..... .++..-..+.....+.++-++-....+.+.+ ....--++.......-.+++|+++|+....
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877665443 2333333445555566666666655555532 112223344333334457888888888876
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 047659 277 MDLVPDLIIYSILI-DGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVIS 355 (619)
Q Consensus 277 ~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 355 (619)
. .|+-...|..+ -+|.+..-++-+.++++-..+.- +-++...|.......+.=+-..|..-...+.+.+-..
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 4 24444444433 34567777777777777776652 2244445544444333322233333333333332110
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047659 356 YSILIKGLCQQ-----GRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLI 430 (619)
Q Consensus 356 ~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 430 (619)
| ..+.-+++. ..-+.|++++--+.+. -|. .--.++-.|.+.+++.+|..+.+++... .|-......+.
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 1 112222222 2335555555554433 222 1223344456667777776666655432 33333333333
Q ss_pred hc----------cHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047659 431 NG----------LMGDALRFFFQSVRMTLIPNLF-IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIA 499 (619)
Q Consensus 431 ~~----------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (619)
.. .+.-|.+.|+-.-..+..-|.. --.++.+.+.-..++++.+..++.+...-...|...+| +..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHH
Confidence 22 3444555555444443332222 22345555555667888888888777664444444443 567888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhH-HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHHcCCHHHH
Q 047659 500 SQGSLSSAILLFFQMLKRGLTPDVITY-SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA-IYNVLLNMLIKECNLDAA 577 (619)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 577 (619)
..|.+.+|+++|-++....++ |..+| ..+.++|.+.++++.|+.++-.+.. ..+.. ....+..-|.+.+.+=-|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877754444 44455 4556677888888888776654432 11222 344555677888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 047659 578 LKLFGQLTDRGLEPDIITYNT 598 (619)
Q Consensus 578 ~~~~~~~~~~g~~p~~~~~~~ 598 (619)
-+.|+.+.. ..|++..|..
T Consensus 481 aKAFd~lE~--lDP~pEnWeG 499 (557)
T KOG3785|consen 481 AKAFDELEI--LDPTPENWEG 499 (557)
T ss_pred HHhhhHHHc--cCCCccccCC
Confidence 888888776 5677766643
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=3.6e-11 Score=108.45 Aligned_cols=291 Identities=12% Similarity=0.078 Sum_probs=155.9
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
..|+|.+|++...+.-+..+.+.- .|..-+.+..+.|+.+.|-.++.++-+....++........+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l--------------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVL--------------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHH--------------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 456666666666665444333222 455555556666666666666666655433334444555555
Q ss_pred HHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchH
Q 047659 156 CLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNA 232 (619)
Q Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 232 (619)
.+..+|+++.|..-+..+.+.+| .+ .....++|.+.|++.....++..+.+.|.-.+...-.
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------- 226 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------- 226 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------
Confidence 66666666666666666555555 22 4555555555555555555555555554333322100
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 233 SSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
....+|+.+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++..++
T Consensus 227 -------------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 227 -------------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred -------------HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 01124455555444444444444444444332 2334445555556666666666666666666665
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047659 313 GLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYS 392 (619)
Q Consensus 313 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 392 (619)
+..|+ -...-.+.+.++...-.+..++..+. .+-++..+.++...|.+.+.|.+|.+.|+...+. .|+..+|+
T Consensus 293 ~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~ 365 (400)
T COG3071 293 QWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYA 365 (400)
T ss_pred ccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHH
Confidence 54433 11122344555555555555554443 1224455666666666666666666666655544 56666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047659 393 SLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 393 ~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
.+..++.+.|+..+|.++.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 666666666666666666665543
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=1.8e-09 Score=103.44 Aligned_cols=453 Identities=12% Similarity=0.031 Sum_probs=294.1
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....+++...+.+.+.++. |...++....+..+-..|+.++|...-+..+..++.+.- -|..++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--------------CwHv~g 82 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--------------CWHVLG 82 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch--------------hHHHHH
Confidence 3467888888888888887 888888888888899999999999999988887766543 566777
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIEN 196 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 196 (619)
-.+....++++|+.+|+.++..++. |...|.-+.-.-++.++++.....-....+..|.. |...+.++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777788999999999999987654 77888777777778888888888888888877722 8888888888999999
Q ss_pred HHHHHHHHHHCC-CCCChhhHHHHH------HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 197 AFHMHRQVIQRG-FVPNIVTCNKIL------KRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 197 A~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
|..+++...+.. ..|+...+.... ......|.+++|.+.+...... +......-.+-...+.+.+++++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999888774 245655554432 3445677888888777665432 22122333445567788899999999
Q ss_pred HHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHh
Q 047659 270 LYNLMMEMDLVPDLIIYS-ILIDGLFKAGRLKEGN-ELLLTALDRGLKLDVVVFSSV-MDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 346 (619)
++..+... .||..-|. .+..++.+..+.-++. .+|....+. + |....-..+ +.......-.+...+++..+.+
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999886 35555444 4444444333333333 555555443 1 111111111 1111112223445566777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCChHHHHHH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVL----IRR----------LEPSLLTY--SSLIDGFCKSGKLRDGFSL 410 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~ll~~~~~~~~~~~a~~~ 410 (619)
.|+++- +..+.+.|-.-...+-..++.-.+. ..| -+|+...| -.++..+-+.|+++.|...
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 776543 2333333322111111111111111 111 13444444 4467788889999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh
Q 047659 411 YDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVIT 490 (619)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 490 (619)
++....+ .|+ -...|..=...+...|+++.|..++++..+.. .+|...
T Consensus 394 Id~AIdH--TPT-----------------------------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 394 IDLAIDH--TPT-----------------------------LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred HHHHhcc--Cch-----------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 9888875 333 22345555577788899999999999888765 466555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH----------HHHHHHccCChHHHHHHHHHHHH
Q 047659 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA----------IIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 491 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----------l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
-..-..-..+..+.++|.++.....+.|. +...... =..+|.+.|++..|++=|..+.+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 44555666778889999999988888764 2221111 12467777777777766555543
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=6.9e-13 Score=135.45 Aligned_cols=150 Identities=13% Similarity=-0.016 Sum_probs=76.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHHHhcCCHHHHHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~A~~~~ 201 (619)
.+++++|...++++++.+|. ++.++..+..++...|++++|...|+++++.+|+ . +..+..++...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455555555555555433 4555555555555555555555555555555552 1 555555555555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+.+++.. +.+...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...++.+..
T Consensus 396 ~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 396 NECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5555553 1122222223333444555566666655554432221333344455555556666666666555443
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.8e-10 Score=106.34 Aligned_cols=482 Identities=11% Similarity=0.052 Sum_probs=265.1
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
-..++.+...++++....+.++..|+-+.+.+.. ..+|....-++.++.-.|+++.|..++..---... +
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~-d-------- 81 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKR-D-------- 81 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhh-h--------
Confidence 3456778888999999999999999999998887 78888888999999999999999998877632211 1
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC-------------CCCCH-----------HhHHHHHHHHHhcC
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG-------------IYLSP-----------DLVQRLMSCLVDSN 161 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~-----------~~~~~l~~~~~~~~ 161 (619)
-......+..+.+..++++|..++.+..... ..+|. ..+..-..+|....
T Consensus 82 ------~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~ 155 (611)
T KOG1173|consen 82 ------IACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALD 155 (611)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhc
Confidence 1155667778888899999999888331100 00000 01111223344445
Q ss_pred ChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChhhHHHHHHHHHhcCCcchHHH
Q 047659 162 SVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGF----VPNIVTCNKILKRLCINGQIGNASS 234 (619)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~ 234 (619)
+.++|...|.+....++.. +..++....-. +.+.++.+..... .-+......+.....-...-+....
T Consensus 156 n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt-----~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 156 NREEARDKYKEALLADAKCFEAFEKLVSAHMLT-----AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcc-----hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence 5566666666665555422 22232222211 1111111111100 0111111111111100000000000
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 235 LFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
.-+...-.+...+.........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.-
T Consensus 231 r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y- 308 (611)
T KOG1173|consen 231 RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY- 308 (611)
T ss_pred cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-
Confidence 00001111223344455555666677788888888888887753 3455556666667778888777766666777653
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (619)
+..+.+|-++.-.|...|...+|++.|.+...-+. .=...|-.+.+.|+-.|..++|...+..+.+.- +....-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHH
Confidence 33677788888888888888888888888765421 123467777888888888888888887776541 1111112223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047659 395 IDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVK 474 (619)
Q Consensus 395 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 474 (619)
.--|.+.+...-|.++|.+.... .|+ |+...+-+.-..-..+.+.+|..
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai--~P~-----------------------------Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAI--APS-----------------------------DPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc--CCC-----------------------------cchhhhhhhheeehHhhhHHHHH
Confidence 44577778888888888776653 343 33333333333333444445555
Q ss_pred HHHHHhhC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 047659 475 LFMLMGMY----N--IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKL 548 (619)
Q Consensus 475 ~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (619)
.|+..... + ......+++.|..+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|+..|.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 44433210 0 00122334445555555555555555555554432 33444555555555555555555555554
Q ss_pred HHHCCCCcCHHHHHHHHH
Q 047659 549 MERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~ 566 (619)
... +.|+..+-..++.
T Consensus 515 aL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 515 ALA--LKPDNIFISELLK 530 (611)
T ss_pred HHh--cCCccHHHHHHHH
Confidence 443 3444443333333
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1e-10 Score=105.59 Aligned_cols=284 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
.|++.+|+++..+..+.+.. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665554433 23334444555556666666666666665543334445555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV-------ISYSILIKGLCQQGRLVEACGLFGQ 378 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (619)
+.++.+.+.. .+........+|.+.|++.....++.++.+.|.-.+. .+|+.++.-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666655443 4555556666666666666666666666665543332 2345555555444555554445554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhc-cHHHHHHHHHHHHhCCCCCCHhhHH
Q 047659 379 VLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLING-LMGDALRFFFQSVRMTLIPNLFIFN 457 (619)
Q Consensus 379 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (619)
...+ ..-++..-.+++.-+.+.|+.++|.++..+..+.+..|....+-.-+.. +.+.-++..+...+.. +.++..+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~ 332 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLS 332 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHH
Confidence 4433 2224444555666666667777777666666665444431111111100 1111111111111110 01223444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQML 515 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 515 (619)
+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+.+++..
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555555555555555555544433 3455555555555555555555555554444
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.2e-09 Score=96.73 Aligned_cols=124 Identities=13% Similarity=0.148 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 433 LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF 512 (619)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 512 (619)
.+++.+..+..+..--...|...+ .+..+++..|++.+|+++|-.+....++.+..-...+.++|.+.+.++.|++++-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 455555555554443333233333 4678889999999999999888765544444444556688899999999877765
Q ss_pred HHHHCCCCCCHHh-HHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 513 QMLKRGLTPDVIT-YSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 513 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
++-. +.+..+ ...+..-|.+.+.+--|.+.|+.+... .|++.-|.
T Consensus 453 k~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 453 KTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred hcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 5432 223333 345556788899988899999988874 56655553
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=1.9e-09 Score=103.28 Aligned_cols=463 Identities=14% Similarity=0.107 Sum_probs=303.5
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLM 154 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 154 (619)
...+++....++.+.+++.+|...+ +....+-.+...|+-++|....+..+..++. +...|..++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHge--------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g 82 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGE--------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG 82 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccch--------------hHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHH
Confidence 3568899999999999999888777 5566666677889999999999999887665 888999999
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 155 SCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
-.+....++++|+..|..++..++|. +.-+.-.-++.|+++.....-....+.. +.....|..+..++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999843 8888888888999999888888888763 5556678888888888999999
Q ss_pred HHHHHHHHHhCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 232 ASSLFDVLLLVG-PKPNVVTFSTLI------NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 232 A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 304 (619)
|..+++...+.. -.|+...+.... ....+.|..+.|++.+..-... +.-....-..-...+.+.++.++|..
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 999999888654 235555443332 2345678888888877665543 22122233445566788899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-cCCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 047659 305 LLLTALDRGLKLDVVVFSSVMDAYV-GIGDVGRAV-QTYDRMLNGGFLPNVISYSIL-IKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 381 (619)
++..+... .||...|...+..+. +..+..++. .+|....+. .|....-..+ +.......-.+..-+++....+
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 99999987 456665555444443 333333343 666665553 1111111111 1111122334445566677777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhh--H
Q 047659 382 RRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI---KRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFI--F 456 (619)
Q Consensus 382 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~--~ 456 (619)
.|+++- +..+...|-.....+ +++++. ..++.++...+ .. + ....-+|.... +
T Consensus 317 Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~-~~-----D---------~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFN-FL-----D---------DGKQEPPTTLLWTL 374 (700)
T ss_pred cCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCC-cc-----c---------ccccCCchHHHHHH
Confidence 776643 333333332222111 222221 11111110000 00 0 00011344433 4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047659 457 NTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI-THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK 535 (619)
Q Consensus 457 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 535 (619)
-.++..+-+.|+++.|...++....+ .|+.. .|..-.+.+...|++++|..++++..+-. .||...-.--..-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 45777888999999999999998876 45543 45555678889999999999999998754 4555544455666678
Q ss_pred cCChHHHHHHHHHHHHCCCC--cCH----HHHHHH--HHHHHHcCCHHHHHHHHHH
Q 047659 536 GKNISVGLHMFKLMERNGVA--PDI----AIYNVL--LNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~--~~~----~~~~~l--~~~~~~~g~~~~A~~~~~~ 583 (619)
+++.++|.++.....+.|.. -+. -.|-.+ ..+|.+.|++-.|++=|..
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 89999999999999887641 111 122222 3567777777776654443
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=6.4e-12 Score=128.40 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=185.1
Q ss_pred CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 78 DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
+.+++|...|+++++.+|+... .|..++.+|...+.. +. +
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~--------------a~~~La~~~~~~~~~-------------g~-------------~ 314 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIA--------------PYCALAECYLSMAQM-------------GI-------------F 314 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHHHHc-------------CC-------------c
Confidence 4578999999999999988765 565665555443221 00 0
Q ss_pred HhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASS 234 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 234 (619)
...+++++|...++++++.+| +. +..+...+...|++++|...++++++.+ +.+...+..+...+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 315 DKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 134568999999999999999 43 7778888889999999999999999986 6667788889999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 235 LFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
.+++..+.++. +...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.....
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 99999986554 23333444555667899999999999987653222455677778888899999999999998766522
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 315 KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG-FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 315 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
.+....+.+...|...| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+... +++.+.
T Consensus 473 -~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 -TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 24445566666777777 47777777766531 12222222 33344556666666655 777665
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=1.5e-09 Score=106.98 Aligned_cols=291 Identities=15% Similarity=0.169 Sum_probs=193.0
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...-+...|++++|+++++.... .+........+..+.+.|+.++|...|+.++..+|++.. .|
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--------------Yy 75 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--------------YY 75 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HH
Confidence 33445678999999999988766 555566678999999999999999999999999999887 44
Q ss_pred HHHHHHHHHc-----CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHhhCCc-cchHHHHHHH
Q 047659 116 SFLIENYVRI-----GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-QYYKLCRAMRGKGF-CVYEFLMNGL 188 (619)
Q Consensus 116 ~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~ 188 (619)
..+..+..-. .+.+...++|+.+...-|. ..+...+.-.+.....+. .+...+......|. ..+..+-..|
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly 153 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLY 153 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 5555554322 2567778888888765433 333323322222222332 45556666777776 4477777776
Q ss_pred HhcCCHHHHHHHHHHHHHC----C----------CCCChhhH--HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHH
Q 047659 189 LRKGVIENAFHMHRQVIQR----G----------FVPNIVTC--NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFS 252 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~----~----------~~~~~~~~--~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 252 (619)
.......-..+++...... + -+|+...| ..+...|...|++++|.+.+++.+.+.|. .+..|.
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~ 232 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYM 232 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 6555555555555554432 1 12333333 44566677788888888888888775322 366677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--------HHH
Q 047659 253 TLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVF--------SSV 324 (619)
Q Consensus 253 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l 324 (619)
.-.+.+-..|++.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|....+ ...
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~ 311 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETEC 311 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHH
Confidence 7778888888888888888888877655 6677777777778888888888888877766543322211 334
Q ss_pred HHHHHcCCCHHHHHHHHHHHHh
Q 047659 325 MDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~ 346 (619)
..+|.+.|++..|++.|..+.+
T Consensus 312 a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 312 AEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5667777777777766665554
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.6e-11 Score=110.22 Aligned_cols=277 Identities=13% Similarity=0.036 Sum_probs=180.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..-...+..++++.+..++++.+.. |..++.+..-+..+...|+..+=..+=.++++.+|..+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a---------- 312 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA---------- 312 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC----------
Confidence 444555555566666666666666666665 55556555555566666666655555555555544433
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~ 185 (619)
.+|.+++--|.--|+.++|++.|.+....++. =...|...+..|+-.+..+.|...|..+.+.-+ -++..+.
T Consensus 313 ----~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 313 ----LSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred ----cchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 37778877777778888888888777665433 345677788888888888888888777766555 2355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC--CChhhHHHHHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK--PNVVTFSTLINAFC 259 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~ 259 (619)
--|.+.++.+.|.++|.++.... +.|+...+-+.-+....+.+.+|..+|...+.. +.+ .-..+++.|.++|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 66777778888888887777764 666667777666666677777777777766521 000 02234666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047659 260 KEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMD 326 (619)
Q Consensus 260 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 326 (619)
+.+.+++|+..|+.......+ +..++.++.-.|...|+++.|.+.|.+.+.. .|+..+...++.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 777777777777776665333 6666777766777777777777777666643 455544444444
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=2.2e-11 Score=111.24 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...+++++..+|.... .+..++..+...|++++|.+.+++..+..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL--------------AYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44455556666666666666666666655554433 4555566666666666666666666554333
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+...+..+...+...|++++|.+.++++..... ..+..+..++...|++++|.+.+.+..+.. +.+...+..+
T Consensus 98 -~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 98 -NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 445555555556666666666666655544321 113334444444555555555555444442 2233344444
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 274 (619)
...+...|++++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444455555555555544443 1223333334444444444555544444443
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=2e-11 Score=111.44 Aligned_cols=196 Identities=9% Similarity=-0.045 Sum_probs=169.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+.....+...+...|++++|++.++.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------- 100 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD--------- 100 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------
Confidence 455677788888999999999999999887 777888899999999999999999999999998777655
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l 184 (619)
.+..++..+...|++++|.+.++++......+ ....+..+..++...|++++|...+.+..+..| +. +..+
T Consensus 101 -----~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 101 -----VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred -----HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 78889999999999999999999998753222 456778889999999999999999999999888 33 8888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
...+...|++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 899999999999999999998873 55667777888888899999999999887764
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=6.8e-11 Score=98.64 Aligned_cols=187 Identities=12% Similarity=0.021 Sum_probs=92.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
..++..|+++|++..|+..++++++.+|+... +|..++..|.+.|..+.|.+.|+..++..+. +.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--------------a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~G 103 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--------------AHLVRAHYYQKLGENDLADESYRKALSLAPN-NG 103 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-cc
Confidence 34445555555555555555555555555444 5555555555555555555555555554433 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
...|.-...+|.+|++++|...|++...... ++|..+.-+..+.|+.+.|...|++.++.. +....+...+...
T Consensus 104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~ 182 (250)
T COG3063 104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARL 182 (250)
T ss_pred chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHH
Confidence 4555555555555555555555555443321 224444444445555555555555554443 2233333444444
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
..+.|++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=
T Consensus 183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4444555555555444444433 34444444444444444444444333
No 67
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=9.7e-10 Score=108.84 Aligned_cols=514 Identities=16% Similarity=0.086 Sum_probs=260.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+.-.+.+++..|...|+.+.|- .|..+.. |-....+..+.....+.|+.+.+. .
T Consensus 24 nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e------------ 80 (1088)
T KOG4318|consen 24 NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E------------ 80 (1088)
T ss_pred chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C------------
Confidence 4456888888899899988887 6766654 556666667777777777776665 1
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHH-HH-------hCCCCCCHHhHHH---------------HHHHHHhcCChh
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAY-MS-------DMGIYLSPDLVQR---------------LMSCLVDSNSVG 164 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-------~~~~~~~~~~~~~---------------l~~~~~~~~~~~ 164 (619)
|..+ +|..|..+|.+.||+.. .+..++ +. ..|.. .++-|.. .+..+.-.|.++
T Consensus 81 -p~aD-tyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 81 -PLAD-TYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -Cchh-HHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 1112 89999999999999865 222222 21 11111 1121211 222233344445
Q ss_pred HHHHHHHHHhhCCcc-chHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 165 QYYKLCRAMRGKGFC-VYEFLMNGLLR-KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 165 ~A~~~~~~~~~~~~~-~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
.+++++..+.....+ ++...++-+.. ...+++-..+.....+ .|+..++..++..-...|+.+.|..++.+|.+.
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 555555444333221 11111332222 2223333333333222 588888888888888889999999999999888
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047659 243 GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFS 322 (619)
Q Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 322 (619)
|.+.+...|..++-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+ +.|.. ....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~sq-~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGSQ-LAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccccc-hhhhhh
Confidence 888888877777765 777888888888888888889888888877777775542221 12222 222333
Q ss_pred HHHHHHHcCCC-----H-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CHH
Q 047659 323 SVMDAYVGIGD-----V-----GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRR--LEP-SLL 389 (619)
Q Consensus 323 ~ll~~~~~~~~-----~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~ 389 (619)
+-+..-.-.|. . .-....+.+..-.|+......|...... ...|.-++..++...+..-- ..+ +..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 32222222331 1 1111122222222444444445444332 23677777777776665321 122 233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH--HHHHcCCC--CCHhhHHHHHhccHHHHHHHHHHHH----hCCCCC-------CHh
Q 047659 390 TYSSLIDGFCKSGKLRDGFSLYD--NMIKRGLK--PDAVVCSLLINGLMGDALRFFFQSV----RMTLIP-------NLF 454 (619)
Q Consensus 390 ~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~~~--~~~~~~~~ll~~~~~~a~~~~~~~~----~~~~~~-------~~~ 454 (619)
.|..++.-|.+.-+..-...++. +..+.... ........+.......+++-+.... .....| -..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 45555555544333222222222 22222100 0000000000000011111111000 000000 111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIHG 532 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~ 532 (619)
.-+.++..++..-+..+++..-+.....-+ + ..|..||.-+......+.|..+.++.... .+..|..-+..+.+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 224444455544444444433333322211 1 44666666666666666666666666542 233445556666666
Q ss_pred HHccCChHHHHHHHHHHHHCC-CCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 533 LFKGKNISVGLHMFKLMERNG-VAPD-IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
..+.+....+.++++++.+.- ..|+ ..++-.++......|+.+.-.++.+-+...|+.
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 666666666666666666521 1121 223444445555556665555555555554443
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=108.19 Aligned_cols=227 Identities=15% Similarity=0.083 Sum_probs=141.6
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
..+++.|.+.|.+.+|.+.++..++..|-. + +|..|...|.+-..+..|+.++...++.-|. ++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-d--------------TfllLskvY~ridQP~~AL~~~~~gld~fP~-~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-D--------------TFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-h--------------HHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hh
Confidence 356667777777777777777766654321 1 6666677777777777777777766665322 44
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
.....+.+++-..++.++|.++|+...+..+ ++ ...+...|...++++-|+..++++++.| ..+...|+.+.-.|.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHH
Confidence 4455666677667777777777777666665 33 5555566666677777777777777776 445555666666666
Q ss_pred hcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047659 225 INGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEG 302 (619)
Q Consensus 225 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 302 (619)
-.++++-++..|++....-..|+ ...|-.+.......||+..|.+.|+.....+.. ....++.|.-.-.+.|++++|
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHH
Confidence 66677777766666654332232 345556666666666666666666666655333 445566666666666666666
Q ss_pred HHHHHHHHHc
Q 047659 303 NELLLTALDR 312 (619)
Q Consensus 303 ~~~~~~~~~~ 312 (619)
..++......
T Consensus 449 rsll~~A~s~ 458 (478)
T KOG1129|consen 449 RSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhhh
Confidence 6666665544
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-08 Score=96.86 Aligned_cols=450 Identities=12% Similarity=0.035 Sum_probs=241.1
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+.+-+....++|++++|.+....++. |.+..++..-.-.+.+.+.|++|..+.+.-......+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~------------ 80 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS------------ 80 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch------------
Confidence 4666777778889999999999999998 88888998888899999999999966655543211110
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHH-H
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGL-L 189 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~-~ 189 (619)
.+..-+.+..+.++.++|+..++... +.+..+...-...+-+.|++++|+.+|+.+.+.+.+.+...+++- .
T Consensus 81 ---~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 81 ---FFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred ---hhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 22344556678899999999998331 224557777888889999999999999999888874422222211 1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-------CCC------Ch-hhHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-------PKP------NV-VTFSTLI 255 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~l~ 255 (619)
..+--..+ ++.+...... ..+-..+......+...|++.+|+++++...+.+ -.. .. ..-..+.
T Consensus 154 a~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 154 AVAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 11111111 1222222111 1122223334456677899999999999883211 110 11 1122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHHHc-----------CCCCCHH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY----SILIDGLFKAGRLK-EGNELLLTALDR-----------GLKLDVV 319 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~ 319 (619)
-.+-..|+.++|..+|....+.+.. |.... |.|+..-....-.+ .++..++..... .-.-...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999887543 44322 22222211111111 111122111110 0000111
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLC--QQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDG 397 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 397 (619)
.-+.++..|. +..+.+.++...... ..|.. .+..++..+. +...+..+.+++...-+....-...+.-..++.
T Consensus 311 ~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 311 RNNALLALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1122333332 333444444333322 23333 3333433332 223467777777777665433334455566777
Q ss_pred HHhcCChHHHHHHHH--------HHHHcCCCCCHhhHHHHHhc----------cHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047659 398 FCKSGKLRDGFSLYD--------NMIKRGLKPDAVVCSLLING----------LMGDALRFFFQSVRMTLIPNLFIFNTL 459 (619)
Q Consensus 398 ~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~ll~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (619)
....|+++.|.+++. .+.+.+..|..+.+...+.. .+++|...+....... ..-..++.-+
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~a 464 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREA 464 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHH
Confidence 788999999999888 44444444544433222211 2233333332222111 0011122222
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 460 MDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF 512 (619)
Q Consensus 460 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 512 (619)
...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 222334455566666666555533 45555555555555543 3444444433
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=1.3e-08 Score=100.37 Aligned_cols=258 Identities=18% Similarity=0.126 Sum_probs=126.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
.+.++...|++++|+..++.......+... .....+..+.+.|+.++|..++..+++.+|. |..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~--------------~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Y 74 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLA--------------VLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDY 74 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHH
Confidence 344556666666666666665555444333 4555566666667777777777666665543 4444
Q ss_pred HHHHHHHHHhc-----CChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 150 VQRLMSCLVDS-----NSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVI-ENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 150 ~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+..+..++.-. .+.+...++|+.+....| +....+.-.+..-..+ ..+...+..++..|+|+ +|+.+-.
T Consensus 75 y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~ 151 (517)
T PF12569_consen 75 YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKP 151 (517)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHH
Confidence 44444444211 234555666666665555 2122222122211122 23344455555555322 2333444
Q ss_pred HHHhcCCcchHHHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH
Q 047659 222 RLCINGQIGNASSLFDVLLLV----G----------PKPNV--VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LI 284 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 284 (619)
.|......+-..+++...... + -.|+. .++..+...|-..|++++|++.++..++.. |+ +.
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e 229 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE 229 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence 444333333333333333211 0 01222 123334445555566666666666555542 22 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
.|..-.+.+-+.|++.+|.+.++.....+.. |...-+-....+.++|++++|.+++....+.+
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 5555555555566666666666555555433 55555555555555666666665555555443
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=2.5e-11 Score=119.70 Aligned_cols=269 Identities=13% Similarity=0.128 Sum_probs=144.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344445555666666666666666666665555 5555555555555555666655555555554443 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 047659 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI-RRLEPSLLTYSSL 394 (619)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l 394 (619)
|...+|+.|..+|...||+.. |+...+ -...+...+...|.-.....++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 455556666666666665543 222111 111223333444443333333333211 112233322 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHhc---cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh
Q 047659 395 IDGFCKSGKLRDGFSLYDNMIKRGL-KPDAVVCSLLING---LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRAT 470 (619)
Q Consensus 395 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 470 (619)
+.-....|.++.+++++..+..... .|..+ ++.. ......++........-.|++.+|..++.+-...|+.+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3333445566666666655433211 12111 1211 11222222222222111467777888887777788888
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC
Q 047659 471 DTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN 538 (619)
Q Consensus 471 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 538 (619)
.|..++.+|.+.|++.+..-|..++-+ .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888877777766666654 67777777777778777888888887777777776544
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.7e-11 Score=105.83 Aligned_cols=225 Identities=11% Similarity=0.019 Sum_probs=115.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~ 193 (619)
.++.+|.+.|.+.+|...|+..++. .|-+.++..+.++|.+-.++..|+.++.+-++..| |+ ...+.+.+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455566666666666666655553 33445555556666666666666666666555555 43 4445555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
.++|.++++...+.. +.+++....+...|.-.++++-|...+.+++..|.. ++..|+.+.-+|.-.++++-++.-|..
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555555553 444444444445555555555555555555555544 444555555555555555555555555
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 274 MMEMDLVPD--LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 274 m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
....--.|+ ..+|-.+-......||+..|.+.|+.....+.. ....+|.|.-.-.+.|++++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 444322222 223333444444445555555555544444322 334444444444455555555555544443
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.39 E-value=1.5e-10 Score=108.21 Aligned_cols=217 Identities=13% Similarity=0.002 Sum_probs=161.0
Q ss_pred HHccCCchhHHHHHHHhhc--CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
...++..+.++.-+..++. +.+ +..|..++.++...|++++|...|+++++.+|+.+. +|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~--------------a~ 101 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD--------------AY 101 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH--------------HH
Confidence 3345566777777777775 222 455888999999999999999999999999888776 89
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHH-HHHHHhcCC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFL-MNGLLRKGV 193 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l-~~~~~~~~~ 193 (619)
..++..+...|++++|...|++.++..|. +..++..++.++...|++++|++.|++..+.+| +.+..+ .......++
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 99999999999999999999999987655 677888899999999999999999999999998 443332 233446778
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHhcCCHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV---GP--K-PNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+++|.+.+....... .++...+ .......|+...+ +.++.+... .+ . .....|..+...+.+.|++++|
T Consensus 181 ~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999997766443 3332222 2223345666554 345444421 11 1 1235688888888999999999
Q ss_pred HHHHHHHHhCC
Q 047659 268 FQLYNLMMEMD 278 (619)
Q Consensus 268 ~~~~~~m~~~~ 278 (619)
...|+...+.+
T Consensus 256 ~~~~~~Al~~~ 266 (296)
T PRK11189 256 AALFKLALANN 266 (296)
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.8e-08 Score=98.79 Aligned_cols=130 Identities=14% Similarity=-0.014 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 047659 390 TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRA 469 (619)
Q Consensus 390 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 469 (619)
.|......+.+.+..+++...+.+.... .|- ....|......+...|+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l-----------------------------~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPL-----------------------------SASVYYLRGLLLEVKGQL 700 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chh-----------------------------hHHHHHHhhHHHHHHHhh
Confidence 3556667788888888888888777654 221 344555666667778888
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 047659 470 TDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAIL--LFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFK 547 (619)
Q Consensus 470 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (619)
++|.+.|......+ +-++.+..++...+...|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+-|+
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 88888888776653 3345577788888888887777776 888888765 4577888888888888888888888888
Q ss_pred HHHHC
Q 047659 548 LMERN 552 (619)
Q Consensus 548 ~~~~~ 552 (619)
.....
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 77663
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=8.8e-10 Score=92.11 Aligned_cols=196 Identities=10% Similarity=-0.064 Sum_probs=167.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~ 190 (619)
++..|+-.|.+.|++..|..-++++++.+|. +..+|..+...|.+.|+.+.|.+.|++..+..| |+.+.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 6778888999999999999999999998766 788999999999999999999999999999988 669999999999
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
.|++++|.+.|+.++... +.-...+|..+.-+..+.|+++.|...|++.++..+. ...+.-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 999999999999998863 2334557778888888999999999999999886543 45667788888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
.++.....+. ++..+.-..|+.....|+.+.+-+.=..+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9998888765 78888888888888899988877766666554
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.2e-07 Score=90.32 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=87.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHhHHHHHHHHHccCCh
Q 047659 468 RATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFF--------QMLKRGLTPDVITYSAIIHGLFKGKNI 539 (619)
Q Consensus 468 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 539 (619)
.+.++.+++...-+..........-.++......|+++.|.+++. .+.+.+.. +.+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 355666666655544222223444555566677888888888887 44443333 34456666777777777
Q ss_pred HHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCccccc
Q 047659 540 SVGLHMFKLMERN--GVAPDIA----IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCLID 612 (619)
Q Consensus 540 ~~A~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 612 (619)
+.|..++...... .-.+... ++.-++..-.+.|.-++|..+++++.+. .++|..+...++.+|++.++....
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHH
Confidence 7777776665541 1111222 3334444455678888888888888874 356788888888888887765443
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.4e-12 Score=82.82 Aligned_cols=50 Identities=42% Similarity=0.818 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 047659 556 PDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605 (619)
Q Consensus 556 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 605 (619)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999999886
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-07 Score=85.81 Aligned_cols=379 Identities=12% Similarity=0.024 Sum_probs=268.1
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-------
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR------- 102 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------- 102 (619)
+-+.-...+.-+-..++-..|+......+. ...+.....++..+-..++..++.-.+...+..-|-......
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 334555666667778888999998888876 555555566666666666666777777777666553333221
Q ss_pred ------HHHh---hcCCCcccHHHHHHHHH--HcCChhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047659 103 ------LFRD---SLGDFGCDYSFLIENYV--RIGKIDESVEIFAYMSDMG-IYLSPDLVQRLMSCLVDSNSVGQYYKLC 170 (619)
Q Consensus 103 ------~~~~---~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 170 (619)
++.. ..++.......-+.+++ -.++...|...+-.+.... .+-|......+..++...|+.++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 1111 12332222233333333 3466666666665554433 3446778899999999999999999999
Q ss_pred HHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 171 RAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 171 ~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+.....+|+. .....-.+.+.|+.+....+...+.... .-+...|..-........++..|+..-++.++.++. +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 9999998832 3333344567888888888877777653 345556666667777788999999999998875332 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 047659 248 VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM-D 326 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~ 326 (619)
...|..-...+...++.++|.=.|+..+... +-+..+|..|+.+|...|.+.+|.-+-....+. .+.+..+.+.+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 5556555677889999999999999988753 236789999999999999999998877766543 223555555552 3
Q ss_pred HHH-cCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 327 AYV-GIGDVGRAVQTYDRMLNGGFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 327 ~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
.+. ....-++|.+++++-... .|+ ....+.+...+...|..+.++.+++..... .||....+.+.+.+...+.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence 333 233467888999887765 344 445677778888999999999999998876 78888899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 047659 405 RDGFSLYDNMIKR 417 (619)
Q Consensus 405 ~~a~~~~~~~~~~ 417 (619)
.++...|......
T Consensus 488 Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 488 QKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888775
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=4.4e-08 Score=96.19 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPD-VITYSAIIHGL 533 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 533 (619)
.|......+.+.++.+++...+.+..... +.....|......+...|..++|.+.|.....- .|+ +....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 45667777888899999987777766543 455666777777888899999999999998864 454 56788999999
Q ss_pred HccCChHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047659 534 FKGKNISVGLH--MFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDR 587 (619)
Q Consensus 534 ~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (619)
...|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.+-|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999888888 9999999753 48889999999999999999999999998863
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.6e-08 Score=87.76 Aligned_cols=199 Identities=12% Similarity=0.052 Sum_probs=153.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
..-++++++..+.+..++.+|++.+..-.+ |.+.-....++..|....++..|..-|++.-...|....
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q--------- 79 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ--------- 79 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---------
Confidence 344789999999999999999999998776 557778889999999999999999999999887776443
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNG 187 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~ 187 (619)
...--++.+-+.+.+.+|+.+...|.+. +..-......-..+.-..+++..+..+++.....+. ++.+...-.
T Consensus 80 -----YrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 -----YRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred -----HHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 3344567788889999999999888542 111112222223334467888889999998886655 667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
..+.|+++.|.+-|....+-+--.....|+..+..| +.|+++.|.+...+++++|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 779999999999999998875455566677666544 678999999999999988754
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.5e-07 Score=92.84 Aligned_cols=211 Identities=11% Similarity=0.136 Sum_probs=107.9
Q ss_pred HHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
|...|+.+.|.+..+.+. +...|..++..+.+.++++-|.--+-.|-...+ .|++++.-.+++..-...+..
T Consensus 738 yvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-----aRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG-----ARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh-----HHHHHHHHhCCcchhhHHHHH
Confidence 466899999988877766 678999999999999999888765555533211 122332222221122223333
Q ss_pred HHHcCChhhHHHHHHHHHhCCC-----------------------CCCHHhHHHHHHHHHhcCChhHHHHHHHHH-----
Q 047659 122 YVRIGKIDESVEIFAYMSDMGI-----------------------YLSPDLVQRLMSCLVDSNSVGQYYKLCRAM----- 173 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----- 173 (619)
....|.+++|..+|++-...+. -.=..+|..-+.-+-..++.+.|++.|++.
T Consensus 810 AieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 3444555555555544422100 001123444444444444455555544431
Q ss_pred -----hhCCc-----------cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 174 -----RGKGF-----------CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 174 -----~~~~~-----------~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
+..+| |. |......+-..|+.+.|+.++..+.+ |..+++..+-.|+.++|-++
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHH
Confidence 22222 11 33333334444444444444443332 23344444445555555544
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 961 A~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4432 244445566777777777777777776654
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.8e-08 Score=92.09 Aligned_cols=433 Identities=12% Similarity=0.050 Sum_probs=240.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..--...+..|+++.|+..|..++. |++-..|..-...++..|++++|.+--.+.++..|.++.
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k------------- 71 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK------------- 71 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh-------------
Confidence 34455567889999999999999987 777788888999999999999999999999998887776
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH---HHHHHHhhCCc-------cc-h
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY---KLCRAMRGKGF-------CV-Y 181 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~-------~~-~ 181 (619)
.|..++.++.-.|++++|+..|.+-++..+. |...+..+..++.......+.. .++..+ ...| ++ |
T Consensus 72 -gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l-~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 72 -GYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKL-ANLPLTNYSLSDPAY 148 (539)
T ss_pred -HHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHh-hcChhhhhhhccHHH
Confidence 8999999999999999999999999997654 7777788887772111110000 011111 1111 11 2
Q ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcc----hHHHHHHHHHh-CCCCCCh
Q 047659 182 EFLMNGLLRKG-------VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIG----NASSLFDVLLL-VGPKPNV 248 (619)
Q Consensus 182 ~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~----~A~~~~~~~~~-~~~~~~~ 248 (619)
..++...-+.. +.+.-.+....+...+.. .+...-..... ...+. ......++..+ .....-.
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 22222211100 000111111111100000 00000000000 00000 00000000000 0000011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVM--- 325 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--- 325 (619)
.-...+..+..+..+++.+++-+....+.. -+..-++....++...|.+..+........+.|.. ....|+.+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH
Confidence 224456666667778888888888777754 35555666666777777777777777666665533 223333332
Q ss_pred ----HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 047659 326 ----DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL-LTYSSLIDGFCK 400 (619)
Q Consensus 326 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~ 400 (619)
.+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|.. .-...-...+.+
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHh
Confidence 2444556677777777665543222221 11222333333333333222 1211 111222455666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 401 SGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMG 480 (619)
Q Consensus 401 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 480 (619)
.|++..|...|.+++.. .|+ |...|....-+|.+.|.+..|+.-.+...
T Consensus 371 ~gdy~~Av~~YteAIkr--~P~-----------------------------Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--DPE-----------------------------DARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred ccCHHHHHHHHHHHHhc--CCc-----------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777665 244 67788888888888888888888777666
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc
Q 047659 481 MYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK 535 (619)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 535 (619)
+.. ++....|.-=..++....+++.|.+.|++.++. .|+..-+..-+.-|..
T Consensus 420 eL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 420 ELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 653 333344444444455566788888888888765 3554444333333333
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=7.9e-10 Score=103.36 Aligned_cols=193 Identities=12% Similarity=-0.102 Sum_probs=147.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+......+...|+.++|...|+.+.. |.++.+|..++..+...|++++|...|+++++.+|+...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------ 133 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------ 133 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------
Confidence 366666677889999999999999988 888999999999999999999999999999999888766
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHHh
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR 190 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~ 190 (619)
++..++.++...|++++|++.|+...+..|. ++. .......+...+++++|...|.+.....+ +.+. .......
T Consensus 134 --a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~ 208 (296)
T PRK11189 134 --AYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFY 208 (296)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHH
Confidence 8889999999999999999999999987654 332 11222234457789999999977654433 4333 2333344
Q ss_pred cCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 191 KGVIENAFHMHRQVIQR---GF---VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~---~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|...|++....++
T Consensus 209 lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 209 LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5665544 344444422 11 12346789999999999999999999999987643
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=1.1e-07 Score=95.81 Aligned_cols=160 Identities=11% Similarity=0.144 Sum_probs=130.8
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMN 186 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~ 186 (619)
..+|..|+..|....+...|..+|+.+.+.+.. +..++......|++...++.|..+.-...+..+ ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 338999999999999999999999999887655 788899999999999999999999776666665 22666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH--HHHHHhcCCH
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL--INAFCKEAKL 264 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~ 264 (619)
.|...++...|..-|+...+.. +.|...|..+..+|..+|++..|.++|++.... .|+. .|... ....+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 7889999999999999999886 788899999999999999999999999988763 3332 23222 2334578999
Q ss_pred HHHHHHHHHHHh
Q 047659 265 EKAFQLYNLMME 276 (619)
Q Consensus 265 ~~a~~~~~~m~~ 276 (619)
.++...+.....
T Consensus 647 keald~l~~ii~ 658 (1238)
T KOG1127|consen 647 KEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 999998887764
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=3.5e-08 Score=96.28 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=121.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|..+.++..++..+...|+.+.|...+.+.....+.+.+.. ......+..+...|++++|...+++..+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------e~~~~~a~~~~~~g~~~~A~~~~~~~l~ 71 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-----------ERAHVEALSAWIAGDLPKALALLEQLLD 71 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556667777777777888887777777777655443210 0222334456677888888888888877
Q ss_pred CCCCCCHHhHHHHHHHHH----hcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 141 MGIYLSPDLVQRLMSCLV----DSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
..|. +...+.. ...+. ..+....+.+.+.......++. ...+...+...|++++|.+.+++..+.. +.+.
T Consensus 72 ~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 72 DYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 6443 4444432 22222 2344444555444422333322 3334456667777777777777777764 4455
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 214 VTCNKILKRLCINGQIGNASSLFDVLLLVGPK-PNV--VTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 214 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
..+..+..++...|++++|...+++.....+. ++. ..|..+...+...|++++|..+|+....
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 56666777777777777777777776654321 121 2344566677777777777777777654
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.7e-06 Score=86.22 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..+++...+.|.+++-..++...++..-.|... +.++-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 4456777777777777777777655432 366778888888888888988888888887765556554 56777
Q ss_pred HHHccCChHHHHHH
Q 047659 532 GLFKGKNISVGLHM 545 (619)
Q Consensus 532 ~~~~~g~~~~A~~~ 545 (619)
+|++.+++.+..++
T Consensus 1175 AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHhchHHHHHHH
Confidence 88888877665544
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.9e-11 Score=78.42 Aligned_cols=49 Identities=45% Similarity=0.773 Sum_probs=27.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=2.4e-09 Score=104.15 Aligned_cols=247 Identities=15% Similarity=0.112 Sum_probs=137.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|....+...++..|...|+++.|..+++.+++.-.+..-. ..+-.......++..|...+++++|..+|++++.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4444566779999999999999999999999861111000 0000011445688899999999999999999975
Q ss_pred C-----CCC-CC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------ccc---hHHHHHHHHhcCCHHHHHHHHH
Q 047659 141 M-----GIY-LS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG--------FCV---YEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~-----~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~---~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
. |.. |. ..+++.|..+|.+.|++++|...++++.+.. +++ +..+...+...++++.|..++.
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3 222 22 2467888889999999999998887754310 011 4444444445555555554444
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN----VVTFSTLINAFCKEAKLEKAFQLYNLMMEM- 277 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 277 (619)
...+.- ..-+.++ ..+++.+...|...|++++|.++|+.+...
T Consensus 350 ~al~i~--------------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 350 KALKIY--------------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHH--------------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 333320 0001111 234555555555555555555555554332
Q ss_pred ---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 278 ---DL--VP-DLIIYSILIDGLFKAGRLKEGNELLLTALD----RGL--KLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 278 ---~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+- .+ ....++.+...|.+.+.+.+|.++|.+... .|+ +-...+|..|...|...|+++.|.++.+.+.
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 01 11 123344455555555555555555544321 121 1123455555555666666666655555544
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=9.9e-09 Score=99.97 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhC--------Cccc---hHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCC
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGK--------GFCV---YEFLMNGLLRKGVIENAFHMHRQVIQR-----G--FVPN 212 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~ 212 (619)
..+...|..+|+++.|..++++.++. .+.+ ...+...|...+++++|..+|+.+... | .+.-
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33555555555555555555554433 1111 333445555566666666666555442 1 1222
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhC-----C-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC
Q 047659 213 IVTCNKILKRLCINGQIGNASSLFDVLLLV-----G-PKPNV-VTFSTLINAFCKEAKLEKAFQLYNLMMEM---DLVPD 282 (619)
Q Consensus 213 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~ 282 (619)
..+++.|...|.+.|++++|...++...+- | ..|.+ ..++.+...+...+++++|..+++...+. -+.++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 335556666777777777777776665421 1 11222 23455556666777777777776654432 11111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----C
Q 047659 283 ----LIIYSILIDGLFKAGRLKEGNELLLTALDRG-------LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN----G 347 (619)
Q Consensus 283 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 347 (619)
..+++.+...|...|++++|.++++++.... ..-....++.+...|.+.+.+.+|.++|.+... .
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2355666666666666666666666555321 111123344455555555555555555544322 1
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 348 G--FLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 348 ~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
| .+-...+|..|...|...|+++.|.++.+.+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112234444444455555555554444443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=2.1e-09 Score=101.93 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=51.4
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
.....++++|+..+|.-+|+.+.. |.+.++|..|+.+...+++=..|+..++++++.+|++.+ +
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle--------------a 355 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE--------------A 355 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH--------------H
Confidence 334445555555555555555544 555556666666665555555666666666665555555 4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
...|+-.|...|.-..|...++..+..
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 445555555555555555555555443
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=6e-08 Score=85.96 Aligned_cols=312 Identities=11% Similarity=0.059 Sum_probs=184.8
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..-...++..++.+|++..|+.-|..+++.+|+++- ++..-+..|+..|+-..|+.=+.++++.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~--------------aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ--------------AIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH--------------HHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 33444566889999999999999999999999988766 6667788899999999999999999984
Q ss_pred CCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCccc------------------hHHHHHHHHhcCCHHHHHHHHH
Q 047659 142 GIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV------------------YEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 142 ~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
+||.. +...-..++.++|.++.|..-|+.++..+|+. ....+..+...|+...|++...
T Consensus 102 --KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 102 --KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred --CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 55643 45667778899999999999999999887711 1122233334455555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
.+++.. +-|...+..-..+|...|.+..|+.-+....+.. ..+..++--+-..+...|+.+.++...++..+. .||
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpd 255 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPD 255 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccc
Confidence 555542 3444444444555555555555544444433321 112333333444444555555555555554442 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVI---SYSIL 359 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 359 (619)
....-.. | ....+..+.++. +......++|.++.+-.+...+........ .+..+
T Consensus 256 HK~Cf~~---Y---KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 256 HKLCFPF---Y---KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhhHHHH---H---HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 2111000 0 000111111111 122345566666776666666553221222 23344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 360 IKGLCQQGRLVEACGLFGQVLIRRLEPS-LLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 360 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
-.++...+++.+|++...++++. .|+ ..++.--..+|.-...++.|+.-|+...+.
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555667777777777776654 333 556666666777777777777777777665
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=1.4e-07 Score=92.04 Aligned_cols=293 Identities=9% Similarity=-0.041 Sum_probs=174.2
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCc---cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSP---NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+...+...|++++|...+..... +.+.. .....+..+...|++++|...+++++..+|.+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~------------- 78 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL------------- 78 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-------------
Confidence 33444557888888777777665 33332 2344566778999999999999999999887654
Q ss_pred ccHHHHHHHHHH----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 113 CDYSFLIENYVR----IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 113 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
++.. ...+.. .|....+.+.++..... .+........+..++...|++++|...+++..+..| +. +..+.
T Consensus 79 -a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la 155 (355)
T cd05804 79 -ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVA 155 (355)
T ss_pred -HHHH-hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 3332 223333 34455555555442121 122344555677888999999999999999999998 44 77888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhH-H--HHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFV-PNI--VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTF-S--TLINAF 258 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~--~l~~~~ 258 (619)
.++...|++++|...++........ ++. ..|..+...+...|++++|..++++.....+.+. .... + .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 8999999999999999999876421 222 2355678889999999999999999864322111 1111 1 222233
Q ss_pred HhcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CHHHHHHHHH
Q 047659 259 CKEAKLEKAFQL--YNLMMEMDL--VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL--------DVVVFSSVMD 326 (619)
Q Consensus 259 ~~~~~~~~a~~~--~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~ll~ 326 (619)
...|....+.+. +........ ............++...|+.+.|..+++.+......+ ..........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 333432222222 111111000 1111122245555667777777777777765432110 0111111222
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 047659 327 AYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~ 346 (619)
.+...|+.+.|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33456666666666655543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=8.3e-08 Score=85.07 Aligned_cols=309 Identities=12% Similarity=0.019 Sum_probs=201.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.-..+...++-+|++.+|+..|..+.+ |.+-.++...+.+|+..|+...|..-+.+.++.-|+-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~------------ 107 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA------------ 107 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH------------
Confidence 344567778889999999999999986 555555666778999999999999999999997665322
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH--HhH------------HHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP--DLV------------QRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
+...-+..+.++|.++.|..=|+.+++..+..+. ..+ ...+..+...|+...|++....+++..
T Consensus 108 --ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 108 --ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred --HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 4455566789999999999999999987654221 122 123334557789999999999999998
Q ss_pred c-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 178 F-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 178 ~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
| |+ +..-..+|...|++..|+.-++.+.+.. ..++..+..+-..+...|+.+.++....+.++. .||-..+-..
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 8 65 8888999999999999999988888775 556667777778888899999999999888874 4443211110
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 047659 255 INAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVVFSSVMDAYVGI 331 (619)
Q Consensus 255 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 331 (619)
...+.+..+.++.|.+ ....++|.++.+-.+...+..+... ...+..+-.++...
T Consensus 263 ------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 263 ------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred ------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 0111222222222221 2233444444444444444432211 12223334444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
+++.+|++...++.+.. +.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555555555555431 112455555555555555555555555555544
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=6.9e-06 Score=81.61 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=172.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH------HHHHHhhcC----CCcccHHHHHHHHHHcCChhhHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF------FRLFRDSLG----DFGCDYSFLIENYVRIGKIDESVEI 134 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~ 134 (619)
+.-...+-+....|.+++|+.+|++.-+.+--+--+ -.++.-... -...+|...+..+-..++.+.|++.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 333344445556777888888777765432110000 000110000 0122788888888899999999999
Q ss_pred HHHH----------HhCCCC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHH
Q 047659 135 FAYM----------SDMGIY---------LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 135 ~~~~----------~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (619)
|++. +...|+ .++..|..-..-+-..|+.+.|+.+|..+.. |..+++..|-.|+.+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCch
Confidence 9865 222111 2334444444445566777777777776654 788888999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-------------
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA------------- 262 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------- 262 (619)
+|-++.++- | |......+.+.|-..|++.+|...|.+... +...|+.|-.++
T Consensus 956 kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 956 KAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSG 1020 (1416)
T ss_pred HHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 999877643 3 777788899999999999999999987752 334444332222
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHH--cCCCCCHHHHHHHHHHHHc
Q 047659 263 --KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT--------ALD--RGLKLDVVVFSSVMDAYVG 330 (619)
Q Consensus 263 --~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~ll~~~~~ 330 (619)
+.-.|-..|++. |.. +...+..|-+.|.+.+|+++--. ++. .....|+...+.-.+.+..
T Consensus 1021 ~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 222333333332 111 23344557777777777665321 122 2234467777777777777
Q ss_pred CCCHHHHHHHHHHHHh----------CC----------------CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 331 IGDVGRAVQTYDRMLN----------GG----------------FLPNVI----SYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~----------~~----------------~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
..++++|..++-...+ .| -.|+.. ....+...|.+.|.+..|.+-|.+.
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 7777777766654322 11 123333 3455667788889888887777654
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=2.3e-06 Score=86.73 Aligned_cols=532 Identities=13% Similarity=-0.000 Sum_probs=251.9
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc--------------
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL-------------- 108 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 108 (619)
+++...|+..|-+... +...++|..++.+|..--+...|.+-|+++.+.++...+......+-+
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3345556655555554 555566666666666555666666666666666555444221111000
Q ss_pred --CCCcc------cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 109 --GDFGC------DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 109 --~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
.+... -|-..+-.|...+++.+|+..|+.....+|. |...|..++.+|.+.|++..|+++|.++...+|+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 00000 2222444566778888888888888877665 78888888888888888888888888888888833
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCCcchHHHHHHHHH-------hCCC
Q 047659 181 ---YEFLMNGLLRKGVIENAFHMHRQVIQRG------FVPNIVTCNKILKRLCINGQIGNASSLFDVLL-------LVGP 244 (619)
Q Consensus 181 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~ 244 (619)
........+..|.+.+|+..+..++..- ...-..++-.....+...|-...|.+.+++.+ .+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 3334455567888888888887776541 01112222222222333344444444444332 2111
Q ss_pred CCChhhHHHHHHHHHhcCCHH------HHHHHHH-HHHhCCCCC--------------------CHHHHHHHHHHHHh--
Q 047659 245 KPNVVTFSTLINAFCKEAKLE------KAFQLYN-LMMEMDLVP--------------------DLIIYSILIDGLFK-- 295 (619)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~~------~a~~~~~-~m~~~~~~~--------------------~~~~~~~ll~~~~~-- 295 (619)
..+...|-.+-.+|.-.-..+ ....++. +....+.-| +..+|..+...|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 122223333222221100000 0001111 011111111 11222222222222
Q ss_pred --cC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 296 --AG----RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 296 --~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
.+ +...|...+.+..+..-. +..+|+.|.-. ...|++.-+.--|-+-... .+.+..+|..+.-.+.+..++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~ 866 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDF 866 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccH
Confidence 11 122444445544443222 44555555433 4445555444444333332 133555666666666677788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHhh-----HHHHHhccHHH----
Q 047659 370 VEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK----RGLKPDAVV-----CSLLINGLMGD---- 436 (619)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~-----~~~ll~~~~~~---- 436 (619)
+.|...|.......+. +...|-.........|+.-+...+|..--+ .|-.++..- ...+.++..++
T Consensus 867 E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 8888888777654221 333343333333455666666666655221 111222111 11111111111
Q ss_pred HHHH------HHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCCCHhhHHH----HHHHHHhcCCHH
Q 047659 437 ALRF------FFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGM-YNIKPDVITHTV----LIRGIASQGSLS 505 (619)
Q Consensus 437 a~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~----l~~~~~~~g~~~ 505 (619)
+.++ +..... +.+.+...|.......-..+....|.+...+... ...+-+...||. +.+.++..|.++
T Consensus 946 ~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred hhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 1111 111111 2223455666666666666666666665554321 001234445553 233444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN-GVAPD-IAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
.|..-+..... ..+...-..-+.. .-.|+++++.+.|+++..- +-..+ +.....++......+.-+.|...+=+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 55433222111 1111111111212 3347788888888887752 11222 23445555555666666777766555
Q ss_pred HHh
Q 047659 584 LTD 586 (619)
Q Consensus 584 ~~~ 586 (619)
...
T Consensus 1101 ~~~ 1103 (1238)
T KOG1127|consen 1101 VKS 1103 (1238)
T ss_pred HHH
Confidence 544
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=4.7e-07 Score=85.58 Aligned_cols=434 Identities=11% Similarity=0.022 Sum_probs=252.5
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 195 (619)
..+....|+++.|+.+|-..+..+|. |-..|..-..+|+..|++++|++--.+.++.+|+. |.....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 45567789999999999999998765 88888999999999999999999999999999844 999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchH---HHHHHHHHhCC---CCCChhhHHHHHHHHHhcC-------
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNA---SSLFDVLLLVG---PKPNVVTFSTLINAFCKEA------- 262 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~------- 262 (619)
+|+..|.+-++.. +.+...++-+..++.......+. -.++..+.... .......|..++..+-+..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999999885 66667777777776211000000 00111111000 0000112222222221100
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH----HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK-AGRL----KEGNELLLTALD-RGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~----~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
+.....+..-.+...+.. .+...-..... .... ........+..+ .....-..-...+.++..+..++..
T Consensus 167 ~d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred ccHHHHHHHHHHhcCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 001111111000000000 00000000000 0000 000000000000 0000012234567777788888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCChHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSS-------LIDGFCKSGKLRDGFS 409 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~~~~~~a~~ 409 (619)
+.+-+....... -+..-++....+|...|.+.++...-.+..+.|.. ....|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888764 45556677778888999888888887777766533 2222332 3346666788899999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
.|.+.......|+...-.. ..+++.+......-.++.. ..-...-...+.+.|++..|+..|.++++.. +.|..
T Consensus 320 ~~~kaLte~Rt~~~ls~lk----~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLK----EAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred HHHHHhhhhcCHHHHHHHH----HHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 9988776544544322111 2233333333222222111 1111222556677888999999998888775 66778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (619)
.|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.|++..+.+ |+..-+..-+.-|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHH
Confidence 88888888888888888888877777652 3334455555556666678888888888888753 45444433333343
Q ss_pred H
Q 047659 570 K 570 (619)
Q Consensus 570 ~ 570 (619)
.
T Consensus 471 ~ 471 (539)
T KOG0548|consen 471 E 471 (539)
T ss_pred H
Confidence 3
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.11 E-value=7.2e-06 Score=82.52 Aligned_cols=222 Identities=15% Similarity=0.114 Sum_probs=135.8
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
....+++..|+.....+.. |+.+.+...-+-.+.+.|+.++|...++..-...+. ++.+...+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--------------D~~tLq~l~ 84 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--------------DDLTLQFLQ 84 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--------------chHHHHHHH
Confidence 4567788888888888776 666666666777788888888888777666544333 122777778
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh-cCC--
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR-KGV-- 193 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~-~~~-- 193 (619)
..|...|+.++|..+|+++.+. .|+......+..+|.+.+.+.+-.+.=-++.+.-| +. +=++++.... ...
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 8888888888888888888874 44577777888888888777654443333333444 33 1112222221 111
Q ss_pred -------HHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCcchHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 194 -------IENAFHMHRQVIQRG-FVPNIVTCNKILKRLCINGQIGNASSLFD-VLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 194 -------~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
..-|...++.+++.+ ..-+..-...-...+...|.+++|.+++. ...+.-...+...-+.-+..+...++|
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 233455566665553 11122222223344455677888888773 333332333444455666777778888
Q ss_pred HHHHHHHHHHHhCCC
Q 047659 265 EKAFQLYNLMMEMDL 279 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~ 279 (619)
.+..++-.++...|.
T Consensus 243 ~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 243 QELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888777777653
No 98
>PLN02789 farnesyltranstransferase
Probab=99.09 E-value=8.5e-08 Score=89.40 Aligned_cols=201 Identities=10% Similarity=0.003 Sum_probs=127.8
Q ss_pred HccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccC-ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD-MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
...+..++|+.++..++. |.+..+|...+.++...| .+++++..+++++..+|++.. +|....
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq--------------aW~~R~ 113 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ--------------IWHHRR 113 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--------------HhHHHH
Confidence 336677788888877776 666677777777777776 567788888888877777666 555555
Q ss_pred HHHHHcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhc---
Q 047659 120 ENYVRIGKI--DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRK--- 191 (619)
Q Consensus 120 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~--- 191 (619)
..+.+.|+. ++++.+++.+++.+++ |..+|+....++...|+++++++.++++++.++ + +|+.....+...
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 555555553 5677777777776655 777777777777777778888888888777776 2 255544444333
Q ss_pred CC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 192 GV----IENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN----GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 192 ~~----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
|. .+.+++....++... +-|...|+.+...+... ++..+|.+.+.+....++ .+......|+..|+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 22 235566665666654 56666777776666552 233456666666554322 244455555555553
No 99
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=1.9e-07 Score=87.05 Aligned_cols=220 Identities=12% Similarity=0.077 Sum_probs=165.7
Q ss_pred HccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
.-.+++.+|...|+.+. ...+..++|...+++++..+|.+.. +|.....++
T Consensus 31 ~y~~~~~~a~~~~ra~l---------------~~~e~serAL~lt~~aI~lnP~~yt--------------aW~~R~~iL 81 (320)
T PLN02789 31 AYTPEFREAMDYFRAVY---------------ASDERSPRALDLTADVIRLNPGNYT--------------VWHFRRLCL 81 (320)
T ss_pred eeCHHHHHHHHHHHHHH---------------HcCCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHH
Confidence 33556666666666554 4678999999999999999998887 677777777
Q ss_pred HHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh--hHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHH
Q 047659 123 VRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV--GQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 123 ~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~ 196 (619)
...| ++++++..++.+++.+++ +..+|+....++.+.|.. ++++++++++++.+| + +|....-++...|++++
T Consensus 82 ~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 82 EALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence 7777 689999999999998776 778898887777777763 678999999999998 3 38888888888999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCc----chHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHH
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCIN---GQI----GNASSLFDVLLLVGPKPNVVTFSTLINAFCKE----AKLE 265 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 265 (619)
+++.++++++.+ +.|..+|+....++.+. |.. ++..+...+++...+. |...|+.+...+... +...
T Consensus 161 eL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccch
Confidence 999999999987 67778888877666554 233 3556666666665443 677888888877663 3345
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFK 295 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 295 (619)
+|.+.+.+....++. +......|++.|+.
T Consensus 239 ~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 239 EVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred hHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 677777776664433 56677777777764
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=2.7e-06 Score=83.29 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=158.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGV 193 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (619)
--...++.|.+.|.+..|.+....-.. ...|......+..++.+..-+++|-.+|+++.. +...+.+|-+-.-
T Consensus 617 d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d-----~dkale~fkkgda 689 (1636)
T KOG3616|consen 617 DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD-----FDKALECFKKGDA 689 (1636)
T ss_pred ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----HHHHHHHHHcccH
Confidence 456778999999999998876644333 334788888888888888888888888888754 2233344444444
Q ss_pred HHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTC-NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+.+|.++.+-.... .+... ......+...|+++.|...|-+.. .....+.+......|.+|+.+++
T Consensus 690 f~kaielarfafp~----evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 690 FGKAIELARFAFPE----EVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred HHHHHHHHHhhCcH----HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHH
Confidence 45555554433211 11111 112233345566777766665442 12234555566777888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN 352 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (619)
.+..++. -..-|..+...|...|+++.|+++|-+.- .++..+.+|.+.|+|..|.++-.+... ....
T Consensus 757 niqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t 823 (1636)
T KOG3616|consen 757 NIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEAT 823 (1636)
T ss_pred Hhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhH
Confidence 7766532 23346667777788888888887775432 345567778888888888777665543 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047659 353 VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNM 414 (619)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 414 (619)
...|-.-..-+-+.|++.+|.+++-.+. .|+ ..|..|-+.|..++.+++..+-
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 5555555566667777777776664332 233 2355667777777766666543
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.3e-08 Score=94.03 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=158.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...+..+.++|++.+|.-.|+.++..+|...+ +|..|+......++-..|+..+++.++.+|. |.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~hae--------------AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-Nl 353 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAE--------------AWQKLGITQAENENEQNAISALRRCLELDPT-NL 353 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHH--------------HHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cH
Confidence 35667778999999999999999999998888 8888888888889989999999999987665 88
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-chHHHH---------HHHHhcCCHHHHHHHHHHHHHC-CCCCChhhH
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-VYEFLM---------NGLLRKGVIENAFHMHRQVIQR-GFVPNIVTC 216 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 216 (619)
.++..|+-.|...|.-..|...+...+...|. .|.... +.+.....+....++|-++... +..+|..+.
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 88888999999999888999988887665541 110000 1112222233334444444333 334677777
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFK 295 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 295 (619)
..|.-.|--.|++++|.+.|+.++...|. |...||.|...++...+.++|+..|++..+. +|+ +++...|.-+|..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMN 510 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhh
Confidence 77777777778888888888887765332 5677888888777777788888888887774 343 2333334556777
Q ss_pred cCCHHHHHHHHHHHH
Q 047659 296 AGRLKEGNELLLTAL 310 (619)
Q Consensus 296 ~~~~~~a~~~~~~~~ 310 (619)
.|.+++|.+.|-..+
T Consensus 511 lG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777777777776554
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.4e-06 Score=76.04 Aligned_cols=289 Identities=12% Similarity=0.128 Sum_probs=196.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 190 (619)
-+.+.+..+.+..++.+|++++..-.++.++ +....+.+..+|-...++..|-+.|+.+-...|.. ...-.+.+..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3677777888999999999999999887655 77888999999999999999999999998888822 3334567778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILK--RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
.+.+..|+.+...+.+. ++...-..-+. ..-..+++..+..+.+.... ..+..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHH
Confidence 99999999999888653 22222222222 23357888899988888742 235566666666777999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------------H
Q 047659 269 QLYNLMMEM-DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-------------DV---------------V 319 (619)
Q Consensus 269 ~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~ 319 (619)
+-|+...+- |.. ....|+..+. ..+.|+++.|++...++.++|++. |+ .
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999998886 444 5567776664 457789999999999998886531 11 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNG-GFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGF 398 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 398 (619)
.+|.-...+.+.|+++.|.+.+-.|.-. ....|+.|...+.-.- ..+++.+...-+.-+...++ -...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 2222233445667777777777666532 2234555555443221 23344444444455554443 2455676777777
Q ss_pred HhcCChHHHHHHHHH
Q 047659 399 CKSGKLRDGFSLYDN 413 (619)
Q Consensus 399 ~~~~~~~~a~~~~~~ 413 (619)
|++.-++-|-.++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 777767666665543
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=2.9e-06 Score=83.13 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=44.6
Q ss_pred HhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
....+|.+|+.+++.+...+..+ |..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|++|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 34444444554444444444422 4444444445555555544443221 123344445555555555444
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
-++.. |+......|.+-..-+-+.|++.+|.++|
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44332 12223333433334444444444444444
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=2.7e-08 Score=90.52 Aligned_cols=190 Identities=12% Similarity=0.005 Sum_probs=137.3
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF 101 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 101 (619)
.+...++........+.+.|++++|+..|+.+.. |.++ .++..++.++.+.|++++|...++++++.+|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-
Confidence 5677788888999999999999999999999887 4444 467889999999999999999999999998876542
Q ss_pred HHHHhhcCCCcccHHHHHHHHHHc--------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 102 RLFRDSLGDFGCDYSFLIENYVRI--------GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..++..++.++.+. |++++|.+.|+.+....|. +...+..+..... ......
T Consensus 107 ----------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~~----- 166 (235)
T TIGR03302 107 ----------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRLA----- 166 (235)
T ss_pred ----------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHHH-----
Confidence 11455566666654 7899999999999887554 3333322221111 000000
Q ss_pred hhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 174 RGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
.....+...+...|++.+|...++.+++... +.....+..+..++...|++++|...++.+...
T Consensus 167 -----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 -----GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0122455667788888888888888887631 223467788888888889999888888887654
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-05 Score=71.26 Aligned_cols=389 Identities=14% Similarity=0.098 Sum_probs=230.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHhhCCccchHHHHHHHHhcC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD-SNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKG 192 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (619)
.....+.+|...++-+.|+..+....+.. ....-+.++..+.+ .++..++.--+...+..-|-....+. +..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~-~ll~l~ 174 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE-ALLELG 174 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH-HHHHHh
Confidence 45667888888999999998887764421 12223333333333 33333333333333333321111111 111000
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCcchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN--GQIGNASSLFDVLLLVG-PKPNVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+..+...-..|-....+|.......-+.+++.. ++...|...+-.+.... .+.|......+...+...|+..+|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 011111111222222333333334444444443 44444444444333222 45567788889999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 270 LYNLMMEMDLVPDL-IIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 270 ~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
.|+..... .|+. .......-.+.+.|+.+....+...+.... ..+...|-.-+......+++..|+.+-++..+.+
T Consensus 254 ~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 254 IFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred HHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 99988764 2332 222223333457788888887777776542 1234444444455567788999998888888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.+...+-.-...+...|++++|.-.|+..+... +-+..+|..++..|...|.+.+|.-.-+...+. -|...-.-.
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~Lt 406 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLT 406 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhh
Confidence 2345555555667788899999999999887653 236778999999999999999988776665443 122111111
Q ss_pred HHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047659 429 LING--------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS 500 (619)
Q Consensus 429 ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 500 (619)
++.. ..++|.++++......+. -....+.+...+...|..+.++.+++..... .||....+.|.+.+..
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRA 483 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence 2211 456666666665544221 2234566667777778888888888776654 5777778888888888
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047659 501 QGSLSSAILLFFQMLKR 517 (619)
Q Consensus 501 ~g~~~~A~~~~~~~~~~ 517 (619)
.+.+++|.+.|...+..
T Consensus 484 ~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 88888888888777754
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=0.0001 Score=75.31 Aligned_cols=302 Identities=10% Similarity=0.085 Sum_probs=136.9
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccH---H---------------------------HHHHHHHc
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNI---A---------------------------QLIHVLLQ 76 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~---------------------------~l~~~~~~ 76 (619)
.-+|+.+...+.+++..+-+.+-+++++.+.- +...+.. + .++.+...
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 34789999999999999999999999998775 1111111 1 12233334
Q ss_pred cCChhHHHHHHHHHHHh---------cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 77 SDMRDVASHVFDKMVIQ---------FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
++-+++|..+|++.--. +-.+.+....+.. .++.+.+|..++.+-.+.|.+.+|++-|-+. .||
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 45555666555544211 0000000000000 1122224444444444444444444443222 133
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI 225 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 225 (619)
..|..++....+.|.|++-++.+.-+.+... .+-..++-+|++.++..+-.+++. .||......+.+-|..
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 4444444444444444444444443333322 113344444444444433332221 2333334444444444
Q ss_pred cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047659 226 NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNEL 305 (619)
Q Consensus 226 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 305 (619)
.|.++.|.-+|... .-|..+...+...|+++.|.+.-++. .+..||..+-.+|...+.+..|
T Consensus 1207 ~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH---
Confidence 44444444333322 22344444444444444444433322 1344555555555444433222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 306 LLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
+|...++.....-...++..|-..|-+++...+++.-.... ......|+.+.-.|++
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 22222233344445566666666677766666665543211 1233445555544544
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=6.8e-07 Score=93.57 Aligned_cols=245 Identities=15% Similarity=0.100 Sum_probs=189.9
Q ss_pred CchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 47 NPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 47 ~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
.++.|.++-+.+.. |++.-.|..+.....+.++.++|+++.++++.......+. +-.-+|.++++.-...
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------EKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------EKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------HHHHHHHHHHhHHHhh
Confidence 66678888887777 8899999999999999999999999999998864211100 0000788888887888
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHHHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
|.-+...++|+++.+.- . .-..+..|...|.+.+.+++|.++++.|.+.-. .+|...+..+.+..+-+.|..++.
T Consensus 1511 G~eesl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 88888999999998742 2 345678899999999999999999999988655 349999999999999999999999
Q ss_pred HHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 203 QVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 203 ~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
++++.- +. ....-...+..-.+.|+.+.++.+|+..+...|+ ....|+..++.-.+.|+.+.+..+|++....++.
T Consensus 1589 rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1589 RALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 998873 22 2334445556667889999999999999876444 6778999999999999999999999999988777
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHH
Q 047659 281 PDL--IIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 281 ~~~--~~~~~ll~~~~~~~~~~~a~~ 304 (619)
|-. ..|...+..--..|+-+.++.
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 643 345555655555555444433
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=0.00011 Score=74.42 Aligned_cols=503 Identities=13% Similarity=0.091 Sum_probs=280.1
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
-.+++.+|.....+..+..|+..- +...-+-.+.+.|+.++|..+++.....++. |..+...+-.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~--------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~ 85 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALY--------------AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQN 85 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHH
Confidence 567899999999999999887643 2222233467899999999999888766554 8889999999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C----
Q 047659 156 CLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING-Q---- 228 (619)
Q Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---- 228 (619)
+|.+.++.++|..+|+++....|+. ...+..+|.+.+++.+-.++--++-+. ++.+...+=.+++.+.... .
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999943 777788888888877665555444443 3444554445555554421 1
Q ss_pred -----cchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 229 -----IGNASSLFDVLLLVG-PKPNVVTFSTLINAFCKEAKLEKAFQLYN-LMMEMDLVPDLIIYSILIDGLFKAGRLKE 301 (619)
Q Consensus 229 -----~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 301 (619)
..-|.+.++.+.+.+ .--+..-.......+...|++++|++++. ..-+.-..-+...-+.-+..+...+++.+
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHH
Confidence 223556666666543 22222223333445567888999999994 33333333445555667778888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH-----HHHHHH--------HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---h
Q 047659 302 GNELLLTALDRGLKLDVVVF-----SSVMDA--------YVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLC---Q 365 (619)
Q Consensus 302 a~~~~~~~~~~~~~~~~~~~-----~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~ 365 (619)
..++-.++...|.. |-.+| ..+-.. +...+..+...+...+..... ....|-+-+.+.. .
T Consensus 245 l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~ 320 (932)
T KOG2053|consen 245 LFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKL 320 (932)
T ss_pred HHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcc
Confidence 99999999988643 31121 111111 111122333333333322210 1112222233322 4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---------hHHHHHhc----
Q 047659 366 QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV---------VCSLLING---- 432 (619)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~ll~~---- 432 (619)
-|+.+++...|-+-. |..| .|..=+..|...=..+.-..++...... .++.. +....+..
T Consensus 321 ~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~ 393 (932)
T KOG2053|consen 321 IGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGL 393 (932)
T ss_pred cCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhc
Confidence 577777655443321 1121 1222222232222233333333333221 11111 00000000
Q ss_pred ----cHHHHHHHHHHHH---hC------CCCCCHh---------hHHHHHHHHHhcCChhH---HHHHHHHHhhCCCCCC
Q 047659 433 ----LMGDALRFFFQSV---RM------TLIPNLF---------IFNTLMDGCCRLKRATD---TVKLFMLMGMYNIKPD 487 (619)
Q Consensus 433 ----~~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~ 487 (619)
..+.....+.+.. +. +..|+.. +.+.|++.+.+.++... |+-+++.-.... +.|
T Consensus 394 ~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hn 472 (932)
T KOG2053|consen 394 YEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHN 472 (932)
T ss_pred cccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-Ccc
Confidence 1222222222211 11 2233322 34678888888887763 444444444332 456
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 047659 488 VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNM 567 (619)
Q Consensus 488 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 567 (619)
..+--.+|+.|+..|-+..|.++|..+--..+.-|..-|. +..-+...|++..+...+....+- ...+..--.-+|..
T Consensus 473 f~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~ 550 (932)
T KOG2053|consen 473 FQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIAL 550 (932)
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHH
Confidence 6666788899999999999999999887766666655443 344456678888888888877663 11122212223333
Q ss_pred HHHcCCHHHHHHHH---HHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 047659 568 LIKECNLDAALKLF---GQLTDRGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 568 ~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
..+.|.+.+..++. +++...-..--..+-+..++-.+..++
T Consensus 551 AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 551 AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 44557666655543 333322112223334444444444444
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.1e-07 Score=86.51 Aligned_cols=188 Identities=10% Similarity=-0.007 Sum_probs=139.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+..+..+...+..+...|++++|...|++++..+|.++.. ..++..++.++.+.|++++|+..++.+.+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA-----------EQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4556677889999999999999999999999988865421 11678899999999999999999999998
Q ss_pred CCCCCCH--HhHHHHHHHHHhc--------CChhHHHHHHHHHhhCCccc-hH--HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 141 MGIYLSP--DLVQRLMSCLVDS--------NSVGQYYKLCRAMRGKGFCV-YE--FLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 141 ~~~~~~~--~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~-~~--~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..|.... .++..+..++.+. |+++.|++.|+++....|+. .. .+... .. ... ..
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~-~~---~~~------~~--- 165 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM-DY---LRN------RL--- 165 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH-HH---HHH------HH---
Confidence 7654222 2566667777654 77899999999999888833 21 11111 00 000 00
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 208 GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK-P-NVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 208 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
......+...+.+.|++++|...++......+. | ....+..+..++.+.|++++|...++.+...
T Consensus 166 -----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011225667789999999999999999876432 2 3568889999999999999999999988765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=4e-08 Score=85.25 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.++.+++...+++.+..+|++.+ .|..++..|...|++++|...|++..+..+. ++..+..+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~--------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE--------------QWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 55556666666666666666655 6666666666677777777777666665544 56666666665
Q ss_pred H-HhcCC--hhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047659 157 L-VDSNS--VGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV 214 (619)
Q Consensus 157 ~-~~~~~--~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 214 (619)
+ ...|+ .++|.+++++..+.+| ++ +..+...+...|++++|...++.+.+.. +|+..
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 3 45455 3666777776666666 22 6666666666677777777777666664 44443
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.5e-07 Score=80.95 Aligned_cols=174 Identities=15% Similarity=0.050 Sum_probs=135.3
Q ss_pred hHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh
Q 047659 50 PAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI 128 (619)
Q Consensus 50 ~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 128 (619)
.+..+...... |.+.+. ..+...+...|+-+.+..+..+....+|+... ....++....+.|++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~--------------ll~~~gk~~~~~g~~ 116 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE--------------LLAAQGKNQIRNGNF 116 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH--------------HHHHHHHHHHHhcch
Confidence 44444444444 555666 77888888888888888888888777776655 445588888899999
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
..|+..|++.....+ +|..+|+.+.-+|.+.|+++.|...|.+..+..+ ++ .+.+.-.+.-.|+.+.|..++....
T Consensus 117 ~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 117 GEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987654 4888999999999999999999999999888777 22 8888888888888888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 206 QRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 206 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
..+ ..|..+-..+..+....|+++.|.++...-.
T Consensus 196 l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 196 LSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 765 5567777777777888888888887766543
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=9.7e-06 Score=89.89 Aligned_cols=366 Identities=12% Similarity=0.003 Sum_probs=223.0
Q ss_pred HHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
...+...|++.+|...+..+.. +.-.......+..+...|+++.+...++.+..... ...+.....
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~-------------~~~~~l~~~ 414 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL-------------LENPRLVLL 414 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH-------------hcCcchHHH
Confidence 3344556666666654444432 11111122233444556666666665554422100 011113345
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCC------CC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cc------h
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIY------LS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CV------Y 181 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~------~ 181 (619)
....+...|++++|...++.....-.. +. ......+...+...|++++|...++......+ +. .
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 566667889999999999887543111 11 12223344556789999999999998876433 21 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC--C-Chh
Q 047659 182 EFLMNGLLRKGVIENAFHMHRQVIQRGF---VPN--IVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK--P-NVV 249 (619)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~ 249 (619)
..+...+...|+++.|...+++.....- .+. ......+...+...|+++.|...+++.... +.. + ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 5566667789999999999988875411 111 234455667778899999999998876642 211 1 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH---
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM--DLVP--DLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVF--- 321 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--- 321 (619)
.+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.+.|.+.+.......... ....+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445556677789999999998887553 1112 23344556667788999999999988875431110 11111
Q ss_pred --HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 047659 322 --SSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV---ISYSILIKGLCQQGRLVEACGLFGQVLIR----RLEP-SLLTY 391 (619)
Q Consensus 322 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~ 391 (619)
...+..+...|+.+.|.+.+............ ..+..+..++...|++++|...++..... +..+ ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11224445688999999988776543211111 11345666788899999999999887653 2222 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 392 SSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 392 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
..+..++.+.|+.++|...+.+..+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66677888999999999999998775
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=1.5e-07 Score=96.73 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=121.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+.+++..++.+..+.|++++|..+++.+++..|+... ++..++..+.+.+++++|+..+++.+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~--------------a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE--------------AFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 567888889999999999999999999999998887766 788889999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..|. +......+..++.+.|++++|.++|+++...+|+ .+..+..++...|+.++|...|+..++.- .+....|+
T Consensus 149 ~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 149 GGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred cCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 7766 7888888999999999999999999999887773 28888888889999999999999998873 44455555
Q ss_pred HHH
Q 047659 218 KIL 220 (619)
Q Consensus 218 ~ll 220 (619)
..+
T Consensus 227 ~~~ 229 (694)
T PRK15179 227 RRL 229 (694)
T ss_pred HHH
Confidence 443
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=2.9e-08 Score=81.38 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=75.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 53 QFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
.+|+.+.. .++..+...+..+.+.|++++|...|++++..+|.+.+ +|..++.++.+.|++++|+
T Consensus 14 ~~~~~al~-~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLS-VDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR--------------AHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHH-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHHHHhhHHHHH
Confidence 34444443 23334556677777777777777777777777776665 6677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..|+++...++. ++..+..+..++...|++++|+..|+..++..|
T Consensus 79 ~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 79 NFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777776543 667777777777777777777777777777766
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=6e-08 Score=79.52 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+|+.+......+...|++++|...|+.+.. |.+..++..++.++.+.|++++|...|++++..+|.+.+
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~--------- 93 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE--------- 93 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---------
Confidence 344444444444455555555555555444 444455555555555555555555555555554444433
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..++.++.+.|++++|+..|+..+..
T Consensus 94 -----a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 94 -----PVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555443
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1.3e-05 Score=88.86 Aligned_cols=340 Identities=10% Similarity=0.011 Sum_probs=221.7
Q ss_pred HHHHHHccCCchhHHHHHHHhhc---CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCch-hHHHHHHhhcCCCcc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN---CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTY-NFFRLFRDSLGDFGC 113 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 113 (619)
....+...|+++.+...++.+.. ..++......+..+...|++++|...++.+....+... ...... ...
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~------~~~ 453 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL------QAE 453 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH------HHH
Confidence 33445567888887777776643 34555556677777889999999999988866422110 000000 000
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------c
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------V 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~ 180 (619)
....+...+...|++++|...++.........+. .....+...+...|++++|...+++...... + .
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 2334556677899999999999998764232232 2345667778889999999999988764322 1 1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCCChh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR----GFV--P-NIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPKPNVV 249 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~ 249 (619)
+..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 555677788999999999998887663 211 1 1233445556677789999999999887642 1111233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM----DLVPDLIIY--SILIDGLFKAGRLKEGNELLLTALDRGLKLD---VVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 320 (619)
.+..+...+...|+++.|.+.+...... +........ ...+..+...|+.+.|..++........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 4555667788899999999999887542 111111011 1122444567899999998877554221111 112
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRMLNG----GFLPN-VISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+..+..++...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+.....
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 345677788999999999999887653 22221 2345566778889999999999999998764
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=1.4e-06 Score=89.81 Aligned_cols=198 Identities=10% Similarity=-0.024 Sum_probs=147.8
Q ss_pred ccCChhhHHHHHHHHHccCCchhH-HHHHHHhhcCCCCccHHHHHHHHHccCChh---HHHHHHHHHHHhcCCchhHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPA-IQFFKWTHNCVSSPNIAQLIHVLLQSDMRD---VASHVFDKMVIQFGKTYNFFRL 103 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~ 103 (619)
+..+|..++..=..+..-|..++| .++..++. .++.+.|... ++..-+......++...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (694)
T PRK15179 24 PASGPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRYPHTEL---- 87 (694)
T ss_pred CCCCcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhccccHH----
Confidence 445665555555555556666555 44444444 2222333333 333333333444444333
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--- 180 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--- 180 (619)
++..|+....+.|.+++|..+++...+..|. +...+..++.++.+.+++++|+..+++.....|+.
T Consensus 88 ----------~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 88 ----------FQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred ----------HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 8999999999999999999999999997655 77889999999999999999999999999999943
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
...+..++.+.|++++|..+|+++...+ +-+..++..+...+-..|+.++|...|+...+. ..+....|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 8888899999999999999999999854 556888999999999999999999999999865 23334444443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=4.1e-07 Score=79.00 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=70.9
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH-HhcCC--HHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL-LRKGV--IENAF 198 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~-~~~~~--~~~A~ 198 (619)
.++.++++..++..++.+|. +...|..+...|...|++++|+..|+++.+..| +. +..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45556666666666665444 666666666666666666666666666666666 22 55555542 44454 36666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 199 HMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+++++.++.+ +.+..++..+...+...|++++|...++++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666664 445556666666666666666666666666654
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=3.4e-07 Score=85.78 Aligned_cols=149 Identities=10% Similarity=0.012 Sum_probs=111.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+...+......|++++|+..++..+...|+++- .+......+.+.|+.++|.+.++++..
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~--------------~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY--------------YLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 566777777888888888888888888888888777654 566777788888888888888888887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..|. .+..+..+..+|.+.|++.+|+.++.+.....| |+ |..+.++|...|+..++.....+...
T Consensus 369 l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----------- 436 (484)
T COG4783 369 LDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA----------- 436 (484)
T ss_pred cCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----------
Confidence 6444 366677788888888888888888888887777 44 88888888888888877776665532
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
..|++++|...+....+.
T Consensus 437 -------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 437 -------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -------hCCCHHHHHHHHHHHHHh
Confidence 346677777666666654
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=1e-07 Score=87.76 Aligned_cols=150 Identities=14% Similarity=0.060 Sum_probs=66.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcc
Q 047659 155 SCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIG 230 (619)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~ 230 (619)
.++...|++++|++++... .+.+.....+.++++.++++.|.+.++.|.+.+ .| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 4444555666555554432 111224444555555555555555555555432 12 222222222221 22455
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 047659 231 NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL-KEGNELLLTA 309 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 309 (619)
+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555555554433 3344455555555555555555555555555443322 344444444444444444 3344444444
Q ss_pred HH
Q 047659 310 LD 311 (619)
Q Consensus 310 ~~ 311 (619)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=0.0002 Score=68.32 Aligned_cols=454 Identities=13% Similarity=0.060 Sum_probs=228.5
Q ss_pred HHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 88 DKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
++-++.+|.+.+ +|+.|++-+..+ .++++++.++++...-|. .+..|..-++...+.++++...
T Consensus 10 ~~rie~nP~di~--------------sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VE 73 (656)
T KOG1914|consen 10 RERIEENPYDID--------------SWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVE 73 (656)
T ss_pred HHHHhcCCccHH--------------HHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHH
Confidence 445556666555 899999988877 999999999999876333 7788999999999999999999
Q ss_pred HHHHHHhhCCc--cchHHHHHHHHh-cCCHH----HHHHHHHHHHHC-CCCC-ChhhHHHHHHH---------HHhcCCc
Q 047659 168 KLCRAMRGKGF--CVYEFLMNGLLR-KGVIE----NAFHMHRQVIQR-GFVP-NIVTCNKILKR---------LCINGQI 229 (619)
Q Consensus 168 ~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~----~A~~~~~~~~~~-~~~~-~~~~~~~ll~~---------~~~~~~~ 229 (619)
.+|.+++..-- |.|..-+...-+ .|... .-.+.|+-.+.. |+.+ ....|+..+.. +..+.+.
T Consensus 74 kLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 74 KLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 99999876544 445444443332 22222 223344444433 3222 22345554443 2234456
Q ss_pred chHHHHHHHHHhCCCCCChhhHHH------HHHHH-------HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFST------LINAF-------CKEAKLEKAFQLYNLMMEM--DLVPDLIIYSILIDGLF 294 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~-------~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~ 294 (619)
+..++++.++....+..=...|+- -+... -+...+..|.++++++... |......+ .-
T Consensus 154 ~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp 226 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VP 226 (656)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CC
Confidence 667777777764321110111211 11111 1123455566666665432 22211111 00
Q ss_pred hcCCHHH--HHHHHHHHH----HcCCC-CC--------HHHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 295 KAGRLKE--GNELLLTAL----DRGLK-LD--------VVVFSSVMDAYVGIGD-VGRAVQTYDRMLNGGFLPNVISYSI 358 (619)
Q Consensus 295 ~~~~~~~--a~~~~~~~~----~~~~~-~~--------~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (619)
..|-.++ ..+++.... +.++. .+ ..+|...+..+.-+-+ |-++-..+....+ ++..
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~ 298 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTE 298 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHH
Confidence 0010011 111111111 00010 00 1111111111111100 1111111111110 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc-CCCCCHhhHHHHHhc--
Q 047659 359 LIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSG---KLRDGFSLYDNMIKR-GLKPDAVVCSLLING-- 432 (619)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~-- 432 (619)
....-......+++.++++.....-..-+..+|..+...--..- ..+.....++.+... ...|+. +|...++.
T Consensus 299 ~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~ir 377 (656)
T KOG1914|consen 299 KGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIR 377 (656)
T ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHH
Confidence 00000000113445555555443322223333433332211111 244455555554432 223332 22222222
Q ss_pred ---cHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 047659 433 ---LMGDALRFFFQSVRMTLIP-NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAI 508 (619)
Q Consensus 433 ---~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 508 (619)
.+..|+.+|.+..+.+..+ ++.+++++|.-|| .++..-|.++|+.-.+.- ..++.--...++-+...++-..+.
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R 455 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNAR 455 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHH
Confidence 4555666666666655555 6677888888777 578888999998544331 233444466777778888888999
Q ss_pred HHHHHHHHCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC-C--CCcCHHHHHHHHHHHHHcCCHH
Q 047659 509 LLFFQMLKRGLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN-G--VAPDIAIYNVLLNMLIKECNLD 575 (619)
Q Consensus 509 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~ 575 (619)
.+|++....++.|+ ..+|..+++--..-|+...+.++-+++... . ..+....-..+++-|.-.+.+.
T Consensus 456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 99999988866655 468999999888899999988888777653 1 2222233345555555555443
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.76 E-value=2.6e-06 Score=88.66 Aligned_cols=232 Identities=9% Similarity=0.066 Sum_probs=114.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH-HHHHhh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF-RLFRDS 107 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ 107 (619)
..+....++..+...+++++|.++.+...+ |.....+..++.++.+.++++.|..+ .++...+.+.++. ..+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 444666666666677788888887776665 66667777777777777776666665 5544433332210 000001
Q ss_pred ----cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHH
Q 047659 108 ----LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEF 183 (619)
Q Consensus 108 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (619)
.+....++..++.+|-+.|+.++|..+++++++.++. |+.+.+.++..|... +.++|.+++.+++.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-------- 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY-------- 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH--------
Confidence 1112224444555555555555555555555554433 455555555555555 55555555444432
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.+...+++..+.+++..+.... +-+...+..+.......- |...-..++-.+-..|-..++
T Consensus 178 ---~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 178 ---RFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred ---HHHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhh
Confidence 2444445555555555554442 122222222221111110 111122333444455555666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLF 294 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 294 (619)
|+++..+++.+.+.... |.....-++.+|.
T Consensus 239 ~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 239 WDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66666666666665333 4444555555544
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=3e-06 Score=79.58 Aligned_cols=144 Identities=11% Similarity=0.013 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 190 (619)
.+......+...|.+++|+..++.++...|. |+..+.....++.+.++.++|.+.++++....|+. ...+..++.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 5666667777889999999999998887554 88888888999999999999999999999999843 7788889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++.+|..++....... +.|+..|..|..+|...|+..++.....+... ..|+++.|...
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHH
Confidence 999999999999988875 78888999999999999999988888777642 46788888888
Q ss_pred HHHHHhC
Q 047659 271 YNLMMEM 277 (619)
Q Consensus 271 ~~~m~~~ 277 (619)
+....+.
T Consensus 448 l~~A~~~ 454 (484)
T COG4783 448 LMRASQQ 454 (484)
T ss_pred HHHHHHh
Confidence 8777765
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=4.1e-07 Score=83.78 Aligned_cols=253 Identities=11% Similarity=0.009 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+ +.++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777775555 22222122334455566777777765543 23333322 4455555444444433344445
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISY-SILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
+..-+++....+..++..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444444333222222222 22223445567777777666432 245555666677777777777777777766
Q ss_pred HcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047659 416 KRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLI 495 (619)
Q Consensus 416 ~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 495 (619)
+. ..|... .....+.+..+.-...+.+|..+|+++.+. ..+++.+.|.+.
T Consensus 159 ~~--~eD~~l---------------------------~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 159 QI--DEDSIL---------------------------TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp CC--SCCHHH---------------------------HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred hc--CCcHHH---------------------------HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 53 122100 011222222222233567777777776554 346666677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI-SVGLHMFKLMER 551 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 551 (619)
.++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.+++.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777766543 22445555566666666665 555666666655
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=1.4e-06 Score=75.17 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=81.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
..+...+...|+-+.+..+........+. +.......+....+.|++..|+..+++.....| |. |+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555555666666666666555443222 445555566666666666666666666665555 22 555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+++.|..-|.+..+.- ..+....+.+.-.+.-.|+++.|..++......+ ..|...-+.+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555555555542 3334444455555555555555555555554432 2244444445555555555555555443
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.72 E-value=1.1e-05 Score=84.89 Aligned_cols=221 Identities=17% Similarity=0.147 Sum_probs=92.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI-----VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 255 (619)
|...|..+...++.++|++++++++.. +.+.. -.|.++++....-|.-+...++|+++.+. -.....|..|.
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHH
Confidence 444444444444444444444444433 11111 12333333333334444444444444431 11122344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKL-DVVVFSSVMDAYVGIGDV 334 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~ 334 (619)
..|.+.+.+++|-++|+.|.+. +......|...+..+.+.++-+.|..++.+..+.-++. ........+..-.+.||.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4444445555555555554443 11233444444444444444444444444444331110 111222223333344555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHH
Q 047659 335 GRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL--LTYSSLIDGFCKSGKLRD 406 (619)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 406 (619)
+.+..+|+...... +.-...|+..+..-.+.|+.+.+..+|+++...++.|.. ..|..++..--+.|+-..
T Consensus 1617 eRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 55555555444431 223444555555555555555555555555544433321 234444444344444333
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.8e-06 Score=73.64 Aligned_cols=159 Identities=9% Similarity=-0.070 Sum_probs=96.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..|+.+++..|+.+.|....+.+.. |.+.++-..-+..+-..|.+++|.++|++.++.+|.+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v------------ 121 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV------------ 121 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH------------
Confidence 445566666666666777666666665 666666666666666667777777777777666665543
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
++-.-+...-.+|+..+|++.++...+.- ..|.++|..+...|...|+++.|.-.+++++-..| ++ +..+...+
T Consensus 122 --~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 122 --IRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred --HHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 44455555556666666666666666652 33666777777777777777777666666666666 33 33333333
Q ss_pred Hh---cCCHHHHHHHHHHHHHC
Q 047659 189 LR---KGVIENAFHMHRQVIQR 207 (619)
Q Consensus 189 ~~---~~~~~~A~~~~~~~~~~ 207 (619)
.. ..+...|.+.+.+.++.
T Consensus 199 Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 199 YTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 32 22445555666665554
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.71 E-value=0.00032 Score=66.97 Aligned_cols=447 Identities=12% Similarity=0.100 Sum_probs=251.7
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 136 AYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN 212 (619)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 212 (619)
++-++.+|. |..+|+.|++-+..+ ..+++++.++++...-|.+ |..-++.....++++....+|.+.+.. ..+
T Consensus 10 ~~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLn 85 (656)
T KOG1914|consen 10 RERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLN 85 (656)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--Hhh
Confidence 344455454 899999999988655 8999999999999998833 888999999999999999999999887 567
Q ss_pred hhhHHHHHHHHHh-cCCcchH----HHHHHHHH-hCCCCC-ChhhHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 047659 213 IVTCNKILKRLCI-NGQIGNA----SSLFDVLL-LVGPKP-NVVTFSTLINA---------FCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 213 ~~~~~~ll~~~~~-~~~~~~A----~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~ 276 (619)
...|...++.-.+ .|+...+ .+.|+-.. +.|..+ +...|+..+.- |..+.+++...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 8888888765443 3444432 23344333 334332 23345554443 3334466777788888775
Q ss_pred CCCCC------CHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHH--HHHH
Q 047659 277 MDLVP------DLIIYSILIDGLF-------KAGRLKEGNELLLTALD--RGLKLDVVVFSSVMDAYVGIGDVG--RAVQ 339 (619)
Q Consensus 277 ~~~~~------~~~~~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~--~a~~ 339 (619)
.-+.- |-..|..-|+... +...+-.|.++++++.. .|......+ .-..|--+ ...+
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~ 238 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVE 238 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHH
Confidence 42211 1111211111111 12234445555554432 121111000 00001111 1111
Q ss_pred HHHHHHh----CCCC-CC--------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhc
Q 047659 340 TYDRMLN----GGFL-PN--------VISYSILIKGLCQQG-RLVEACGLFGQVLI----RRLEPSLLTYSSLIDGFCKS 401 (619)
Q Consensus 340 ~~~~~~~----~~~~-~~--------~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~ 401 (619)
++....+ +++. .+ ..+|+..+..+.-.. -|-++..++....+ .|-.|+..
T Consensus 239 ~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~------------ 306 (656)
T KOG1914|consen 239 LWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK------------ 306 (656)
T ss_pred HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch------------
Confidence 2211111 1111 00 011111111111110 11122222211111 11111111
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHhc--------cHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047659 402 GKLRDGFSLYDNMIKRGLKPDAVVCSLLING--------LMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTV 473 (619)
Q Consensus 402 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 473 (619)
...+++..+++.....-..-+...+..+... ..+....++.+.......--..+|...|....+..-+..|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 1134555555555443222233333322221 12233344444443322223456788888888889999999
Q ss_pred HHHHHHhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 474 KLFMLMGMYNIKP-DVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 474 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
.+|.+..+.+..+ ++...++++.-||. +|.+-|..+|+.-++. +.-+..-....++-+.+.++-..|..+|++....
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999877666 77788888887764 7899999999987764 2334444567888888999999999999999988
Q ss_pred CCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHhhcC
Q 047659 553 GVAPD--IAIYNVLLNMLIKECNLDAALKLFGQLTDR-G--LEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 553 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g--~~p~~~~~~~ll~~~~~~~ 607 (619)
++.|+ ..+|..++..-..-|+...+.++-+++... . ..|.-..-..+++-|.=.|
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILD 524 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcc
Confidence 66655 469999999999999999999998887752 1 2222233444555554433
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=9.1e-06 Score=84.73 Aligned_cols=233 Identities=11% Similarity=0.036 Sum_probs=174.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH----HhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF----RDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
|.+..+|..++..+...|++++|..+.+..+..+|+....+-.. ...-+..+.....++.......++.....+++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 78889999999999999999999999999999999887754211 11111222233377777777778866666677
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 137 YMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
.+.+. ..+..++..++.+|-+.|+.++|..+++++++.+| ++ .+.++-.+... +.++|.+++.+++..
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 77663 33667899999999999999999999999999999 54 88899999988 999999999888765
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047659 214 VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM-DLVPDLIIYSILIDG 292 (619)
Q Consensus 214 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~ 292 (619)
+...+++..+.+++.++....+. +...+- ++.+.+... |..--..++..+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHH
Confidence 66778999999999999875332 222222 222333322 223344566667778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 293 LFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
|-..++++++..+++.+.+.... |.....-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 88889999999999999987654 6666666666665
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=6.3e-07 Score=73.38 Aligned_cols=103 Identities=14% Similarity=0.040 Sum_probs=67.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+......++..+.+.|++++|...+++++..+|.+.. .+..++..+...|++++|...++...+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR--------------YWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666666777777777777777666665554 566667777777777777777777666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++..+..+..++...|++++|...|+...+..|
T Consensus 80 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 80 LDPD-DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred cCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5433 566666666667777777777777766666655
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.6e-06 Score=85.14 Aligned_cols=238 Identities=15% Similarity=0.108 Sum_probs=166.2
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
|---....++..+...|-...|...+++.. .|...+.+|...|+..+|..+..+-++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------------------mw~~vi~CY~~lg~~~kaeei~~q~le- 452 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------------------MWDPVILCYLLLGQHGKAEEINRQELE- 452 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------HHHHHHHHHHHhcccchHHHHHHHHhc-
Confidence 333334577888888888888888888774 567778888888888888888777776
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
-+|++..|..++++.....-++.|+++.+..-.+ .-..+.......++++++.+.++.-.+.. +....+|.....
T Consensus 453 -k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~ 527 (777)
T KOG1128|consen 453 -KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGC 527 (777)
T ss_pred -CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccH
Confidence 3457777777877777777777788777664332 11222223334678888888888877775 666777877777
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKE 301 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 301 (619)
+..+.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHH
Confidence 888888888888888887764222 4667888888888888888888888888877633 55666666777778888888
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 047659 302 GNELLLTALDRG-LKLDVVVFSSVMDAYV 329 (619)
Q Consensus 302 a~~~~~~~~~~~-~~~~~~~~~~ll~~~~ 329 (619)
|.+.+..+.... ...|..+...++....
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 888887776432 1114444444444433
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=1.7e-06 Score=82.25 Aligned_cols=127 Identities=12% Similarity=0.067 Sum_probs=57.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
++.....++..+...++++.|+.+|+.+.. .++++...+++++...++-.+|.+++.+.+...|.+.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~-~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~----------- 235 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRE-RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE----------- 235 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHh-cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH-----------
Confidence 333444444444444444555555554442 23344444444444444444455554444444443332
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
....-+..+.+.++++.|+.+.+++....|. +..+|..|+.+|...|+++.|+-.+..+
T Consensus 236 ---LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 ---LLNLQAEFLLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3333344444444445555555444443222 3344444444554444444444444443
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=8.4e-08 Score=55.49 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=19.0
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047659 553 GVAPDIAIYNVLLNMLIKECNLDAALKLFGQL 584 (619)
Q Consensus 553 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (619)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666665555
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=7.4e-06 Score=80.61 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=218.0
Q ss_pred cccccCChhhHHHHHHHHHccCCch----hHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 25 THISDLQFNQANAILANLIKTNNPT----PAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
++...+..+.+..++...+.+.... .+..+.+...+... -..+.+.+.+.....+|++..+..+...-.-.
T Consensus 315 tp~d~la~E~l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~---~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~-- 389 (777)
T KOG1128|consen 315 TPHDMLAEEELEPLTSTLLSQTEKYWSIQASALLLRFLLESTR---SRTVERALSQMQFLVKAIQMKEYSVLNRLSYI-- 389 (777)
T ss_pred CCcchhHHHHHHHHHHHHhhccCCceeeehHHHHHHHHHHhcC---ccchhhHHHHHHHHHHHHhhccHhHHhccccc--
Confidence 3345667778888888887776333 22233333332111 12344455555555555555555444321111
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
+...+|+.......++..+...|-...|..+|++. ..|..++.+|+..|+.++|..+..+-.++.|++
T Consensus 390 ---ya~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~ 457 (777)
T KOG1128|consen 390 ---YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDP 457 (777)
T ss_pred ---ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc
Confidence 13346777778899999999999999999999887 468889999999999999999999988877766
Q ss_pred --hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 181 --YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 181 --~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
|..++.......-+++|.++.+....+ +-..+.......++++++.+.|+.-.+.++ -...+|-.+..+.
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~A 529 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAA 529 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHH
Confidence 777777766666778888887766543 222333334457899999999998877533 3577898999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV 338 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 338 (619)
.+.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|.
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHH
Confidence 9999999999999998875322 5678999999999999999999999999998743 6677888888889999999999
Q ss_pred HHHHHHHh
Q 047659 339 QTYDRMLN 346 (619)
Q Consensus 339 ~~~~~~~~ 346 (619)
+.+.++..
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 99998875
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1e-07 Score=55.10 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=17.1
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 047659 518 GLTPDVITYSAIIHGLFKGKNISVGLHMFKLM 549 (619)
Q Consensus 518 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 549 (619)
|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=2.4e-06 Score=69.91 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 047659 85 HVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG 164 (619)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (619)
..|++++..+|.+.. ....++..+.+.|++++|.+.|+.+...++. ++..+..+...+...|+++
T Consensus 4 ~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE--------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhhHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHH
Confidence 345666666665544 6677888888899999999999998887654 7888888888888899999
Q ss_pred HHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 165 QYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 165 ~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+|...++...+.+| +. +..+..++...|+++.|.+.++...+..
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999988888777 22 7777788888888888888888888763
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=4.5e-05 Score=65.40 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=76.0
Q ss_pred ChhhHHHHHHHHHc--cCCchhHHHHHHHhhc----C-CCCccH---HHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 31 QFNQANAILANLIK--TNNPTPAIQFFKWTHN----C-VSSPNI---AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~----~-~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
+-+.+...+..+.. ..++++.++++..+.. . ..++-| -.++.+.+-.|+.+.|..-+++...++|++..
T Consensus 9 ~~~~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R- 87 (289)
T KOG3060|consen 9 SWEELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR- 87 (289)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh-
Confidence 44444455554432 4456666666666554 0 111111 23444455556666666665555555544433
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C 179 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 179 (619)
+-..-+..+-..|++++|+++++..++.+|. |..++..-+.+.-.+|+.-+|++.+....+.-+ |
T Consensus 88 -------------V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 88 -------------VGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred -------------HHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 2222222333455666666666666555433 445554444444455555555555544444333 2
Q ss_pred c--hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 180 V--YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 180 ~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
. |..+...|...|++++|.-.+++++-
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 1 44444444444444444444444433
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=3.5e-05 Score=66.61 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 297 (619)
.+.+..+.+.|.+.+++|.+- .+..+.+.|..++.+ .+....|.-+|++|.+. ..|+..+.+....++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344445555555555555431 133344444444332 23455555555555542 3455555555555555556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD-VGRAVQTYDRMLN 346 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 346 (619)
++++|+.++++....... ++.+...++-.-...|. .+...+.+.+++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666666555555433 33333333333333333 2333344444444
No 139
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.48 E-value=1.6e-05 Score=71.51 Aligned_cols=194 Identities=10% Similarity=-0.029 Sum_probs=120.4
Q ss_pred cCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccH---HHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 21 SESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNI---AQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++.....++.+++.+........+.|++++|++.|+.+.. |.++.+. ..++.++.+.+++++|...+++.++.+|
T Consensus 21 s~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 21 SGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4444455677888888889999999999999999999998 5554444 5788899999999999999999999999
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcC---------------C---hhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIG---------------K---IDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++++. +.++..++.++...+ | ...|...|+.+++.-|. +..
T Consensus 101 ~~~~~-----------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~y--------- 159 (243)
T PRK10866 101 THPNI-----------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQY--------- 159 (243)
T ss_pred CCCch-----------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-Chh---------
Confidence 88663 113333333321111 2 23566777777775443 111
Q ss_pred HhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCcchHHHH
Q 047659 158 VDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQR--GFVPNIVTCNKILKRLCINGQIGNASSL 235 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~A~~~ 235 (619)
..+|...+..+...-..--..+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+.
T Consensus 160 -----a~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 160 -----TTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 111111111111000000123455666677777777777777665 2223344455666777777777777766
Q ss_pred HHHHH
Q 047659 236 FDVLL 240 (619)
Q Consensus 236 ~~~~~ 240 (619)
...+.
T Consensus 235 ~~~l~ 239 (243)
T PRK10866 235 AKIIA 239 (243)
T ss_pred HHHHh
Confidence 65543
No 140
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.001 Score=57.83 Aligned_cols=150 Identities=16% Similarity=0.128 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV----GI 331 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 331 (619)
..|+..|++++|++...... +......=+..+.+..+.+.|.+.++.|.+-. +..+.+.|..++. ..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 44555566666665554411 22222222333445555566666666665432 3344444444433 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL-RDGFSL 410 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~ 410 (619)
+.+..|.-+|++|.+. .+|+..+.+-...++...|++++|..+++....+... ++.+...++-+-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4456666666666553 3456666666666666666666666666666655333 334433333333333433 223344
Q ss_pred HHHHHH
Q 047659 411 YDNMIK 416 (619)
Q Consensus 411 ~~~~~~ 416 (619)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1.3e-05 Score=66.09 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=74.6
Q ss_pred ccCChhHHHHHHHHHHHhcCCch-hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTY-NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 152 (619)
..|+...+...++.+...+|.+. ... +...++..+...|++++|...|+.+....+.|+ +.....
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~------------A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAAL------------AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHH------------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 46777777777777777776652 111 555667777778888888888888877653332 234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
+..++...|++++|+..++......... +.....++...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777777777777777776543322222 555556666666666666666543
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=3.2e-06 Score=67.84 Aligned_cols=101 Identities=9% Similarity=-0.029 Sum_probs=89.3
Q ss_pred cccCC-hh---hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 27 ISDLQ-FN---QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 27 ~~~~~-~~---~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
+.+++ ++ .+......+...|++++|..+|+.+.. |.+...|..++.++-+.|++++|+..|.++...+|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~- 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ- 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch-
Confidence 35556 55 455566667889999999999998887 999999999999999999999999999999999888777
Q ss_pred HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 101 FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..++.++...|+.+.|.+.|+..+..
T Consensus 105 -------------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 105 -------------APWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999998765
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=4.6e-06 Score=66.99 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=84.9
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+.+....++..+...|++++|.++|+.....+|.+.+ .|..|+.++...|++++|+..|......
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~--------------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD--------------YWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566777888888999999999999999998888877 7888999999999999999999999888
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
++. ++..+..+..++...|+.+.|.+.|+..+..
T Consensus 99 ~~d-dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KID-APQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred CCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 764 8888888999999999999998888877653
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=1.4e-05 Score=65.96 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+..++.. ...++...+...++.+.. |.+ ..+...++..+...|++++|...|+.++...+++.-.
T Consensus 15 y~~~~~~-~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--------- 84 (145)
T PF09976_consen 15 YEQALQA-LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--------- 84 (145)
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---------
Confidence 3334443 468999999998998887 444 2444568889999999999999999999976543210
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..+...|+..+...|++++|+..++.... ....+..+...+.+|.+.|++++|+..|+..
T Consensus 85 --~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 --PLARLRLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 11667889999999999999999977533 2335667888999999999999999999875
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.8e-05 Score=69.17 Aligned_cols=112 Identities=6% Similarity=-0.113 Sum_probs=84.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC---ChhhHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG---KIDESVEIFAY 137 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 137 (619)
|.+.+.|..++.++.++|+++.|...|.++.+..|++++ .+..++.++..+. .-.++.++|++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--------------~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--------------ILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 788888888888888888888888888888888888777 5555555555443 33567888888
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c-chHHHHHH
Q 047659 138 MSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C-VYEFLMNG 187 (619)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~l~~~ 187 (619)
++..++. |+.+...+...+..+|++.+|...++.|.+..| + ++..++..
T Consensus 219 al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 219 ALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 8887655 777888888888888888888888888888777 3 35555543
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=1.1e-05 Score=77.44 Aligned_cols=92 Identities=5% Similarity=-0.056 Sum_probs=51.1
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
.....+...|++++|+++|+.+.. |.+...+..++.++.+.|++++|...+++++..+|.... +
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~--------------a 72 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK--------------A 72 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH--------------H
Confidence 334445555555555555555554 555555555555555555555555555555555554443 4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
|..++.+|...|++++|+..|+++++.+
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5555555555555555555555555543
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.28 E-value=1.4e-05 Score=63.65 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=52.1
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+...+..+.+.|++++|...|++++..+|++.. ...++..++.++.+.|+++.|...|+.+....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 4445555555556666666666555555443211 00144455555555566666666665555433221
Q ss_pred --CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 146 --SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 146 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+.++..+..++.+.|++++|...++++.+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 134455555555555555555555555555444
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1e-05 Score=71.36 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..-...+++.++|.+|++.|..++. |.++.-|...+.+|.+.|.++.|.+-.+.++..+|..+.
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk------------- 150 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK------------- 150 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH-------------
Confidence 33334444555555555555555555 555555555555555555555555555555555554443
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+|..|..+|...|++++|++.|++.++
T Consensus 151 -ay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 151 -AYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred -HHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 555555555555555555555555555
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=1.8e-05 Score=63.01 Aligned_cols=102 Identities=13% Similarity=-0.042 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
++.+......+.+.|++++|...|+.+.. |.+ +.++..++.++.+.|+++.|...|++++..+|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------- 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK------- 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-------
Confidence 45667788888999999999999999987 333 357788999999999999999999999998776421
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.+.++..++.++.+.|++++|...++++.+..|.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 75 ----APDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred ----ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 1126888899999999999999999999987654
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=1.2e-05 Score=61.15 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+..++..+...|++++|...+++++...|.... ++..++..+...|++++|.+.|+......+. +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNAD--------------AYYNLAAAYYKLGKYEEALEDYEKALELDPD-N 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c
Confidence 455666666677777777777777666555433 5666666777777777777777776665433 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
...+..++.++...|+++.|...+....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 4566666666666777777776666655443
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=4.9e-05 Score=72.54 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG 230 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 230 (619)
..++..+...++++.|+++|+++.+..|++...+++.+...++-.+|.+++.+.++.. +.+..........+.+.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4445555566667777777777777666665566666666666667777776666553 445555555556666667777
Q ss_pred hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 231 NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
.|.++.+++....|. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777776664221 34467777777777777777776666654
No 152
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.20 E-value=4.4e-05 Score=67.00 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=56.8
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
|+.+++.+..........|++.+|+..|+.+.. |.+ +.+...++.++.+.|+++.|...+++.+...|.++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 456788899999999999999999999999997 433 355677889999999999999999999999998765
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.18 E-value=0.00019 Score=64.61 Aligned_cols=188 Identities=8% Similarity=-0.077 Sum_probs=129.0
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.++..+...+..+...|++++|...|+++....|.+.... .+...++.+|.+.+++++|+..+++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~-----------~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQ-----------QVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455566778888899999999999999999988765421 14567889999999999999999999988
Q ss_pred CCCCCHH--hHHHHHHHHHhcC---------------C---hhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHH
Q 047659 142 GIYLSPD--LVQRLMSCLVDSN---------------S---VGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 142 ~~~~~~~--~~~~l~~~~~~~~---------------~---~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~ 200 (619)
.|..... ++..++.++...+ + ...|+..|+.+++..|++ |...++ ..
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~------------~r 166 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT------------KR 166 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH------------HH
Confidence 6663322 3333333221111 1 245778888888888855 543332 22
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP--KPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+..+... =..--..+...|.+.|.+..|..-++.+.+.-+ +........++.+|...|..++|.+....+..
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 2222111 001112566778899999999999999997522 22345677888999999999999988876654
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=3.9e-05 Score=73.73 Aligned_cols=96 Identities=7% Similarity=-0.042 Sum_probs=82.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP 147 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 147 (619)
...+..+...|++++|+..|++++..+|.+.. .|..++.+|.+.|++++|+..+++++...+. ++
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~--------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~ 70 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE--------------LYADRAQANIKLGNFTEAVADANKAIELDPS-LA 70 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CH
Confidence 34566777889999999999999998887766 7888888999999999999999999887654 77
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+..++.+|...|++++|+..|+++++.+|
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8888888899999999999999999888887
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=7.5e-05 Score=63.75 Aligned_cols=97 Identities=6% Similarity=-0.072 Sum_probs=71.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+..++..+...|++++|...|++++...+...+ ....+..++..+.+.|++++|...++++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-----------RSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344456677888888899999999999999876554321 011778888899999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKL 169 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 169 (619)
..+. +...+..+..++...|+...+..-
T Consensus 101 ~~p~-~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 101 LNPK-QPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred hCcc-cHHHHHHHHHHHHHcCChHhHhhC
Confidence 6544 567777778888777775444433
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=9.3e-06 Score=59.62 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=60.2
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
+|+++.|+..+++++...|.+++.. .+..++.+|.+.|++++|..+++. .+.++. +......++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~------------~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSA------------YLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHH------------HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHH------------HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHH
Confidence 6888999999999999887532211 556688999999999999999988 433222 44566667888
Q ss_pred HHhcCChhHHHHHHHH
Q 047659 157 LVDSNSVGQYYKLCRA 172 (619)
Q Consensus 157 ~~~~~~~~~A~~~~~~ 172 (619)
+.+.|++++|++.|++
T Consensus 68 ~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 8899999999888875
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.011 Score=55.83 Aligned_cols=447 Identities=14% Similarity=0.131 Sum_probs=236.0
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHh------HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHH--h
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDL------VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLL--R 190 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~--~ 190 (619)
-.+.+++++.+|..+|.++.+.... ++.. -..++.+|. .++.+.....+....+..+ ..|..+..++. +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3466889999999999999765322 3332 244666664 4455666666666666666 44777766554 7
Q ss_pred cCCHHHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCCCChhhHH
Q 047659 191 KGVIENAFHMHRQVIQR--GFVP------------NIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPKPNVVTFS 252 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~ 252 (619)
.+.+++|.+.+..-... +..+ |...-+..++.+...|++.+++.+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999988776655 2221 2222345567778899999999988887643 3447888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047659 253 TLINAFCKEAKLEKAFQLYNLMME---MDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYV 329 (619)
Q Consensus 253 ~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 329 (619)
.++-.+.+. .|-++++ .++-|+ -|. ++-.|.+. ...++...-..+.|-...+..++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYe-milfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD--YYE-MILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH--HHH-HHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHHH
Confidence 866655442 2323322 122232 222 22222211 011111111112233333333333332
Q ss_pred cC--CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcC
Q 047659 330 GI--GDVGRAVQTYDRMLNGGFLPNVIS-YSILIKGLCQQGRLVEACGLFGQVLIRRLEP----SLLTYSSLIDGFCKSG 402 (619)
Q Consensus 330 ~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~ 402 (619)
-. ....--+++++.....-+.|+... ...+...+.+ +.+++..+-+.+....+.+ =..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222233333333333344322 2223333332 3444444433332221110 1234566666666667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHhc----------------cHHHHHHHHHHHHhCCCCCCHhhHHHH---HHHH
Q 047659 403 KLRDGFSLYDNMIKRGLKPDAVVCSLLING----------------LMGDALRFFFQSVRMTLIPNLFIFNTL---MDGC 463 (619)
Q Consensus 403 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~ 463 (619)
+...|.+.+.-+... .|+...-.-++-. ....-+.+++.+....+. .-....-| ..-+
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 766666666655443 3332221111111 233333444444433221 11111122 2334
Q ss_pred HhcCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHH
Q 047659 464 CRLKR-ATDTVKLFMLMGMYNIKPDVITHTVLIR----GIAS---QGSLSSAILLFFQMLKRGLTPD----VITYSAIIH 531 (619)
Q Consensus 464 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~ 531 (619)
.+.|. -++|+.+++.+.... +-|...-|.+.. +|.. ...+.+-..+=+-+.+.|+.|- ...-|.+.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 45555 788999999887653 334444333322 2222 2334444555555556687763 233444444
Q ss_pred H--HHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 532 G--LFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNT 598 (619)
Q Consensus 532 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 598 (619)
+ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|.+++..+ +|+..+++.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3 4568999988766555555 7899999999999999999999999999875 566555554
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=1e-05 Score=47.75 Aligned_cols=33 Identities=42% Similarity=0.796 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888877777776
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.3e-05 Score=55.37 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++..+.+.|++++|...|++++..+|.+.+ ++..++.++.+.|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPE--------------AWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556666666666666666666555554 5566666666666666666666666554
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.00022 Score=66.40 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=78.7
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
++++|..+|+.+- ..+-..|++++|...|.++...... .... ...|...+.+|.
T Consensus 30 ~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~A-----------a~~~~~Aa~~~k 86 (282)
T PF14938_consen 30 DYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEA-----------AKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHH-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHH-----------HHHHHHHHHHHH
Confidence 4555555555444 5666677777777777776553211 1110 003333333333
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhc-CCHHHHHHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRK-GVIENAFHMHR 202 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~ 202 (619)
+. ++++|++.++... ..|...|++..|-..+.++ ...|-.. |+++.|.+.|.
T Consensus 87 ~~-~~~~Ai~~~~~A~---------------~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAI---------------EIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQ 139 (282)
T ss_dssp HT-THHHHHHHHHHHH---------------HHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHH
T ss_pred hh-CHHHHHHHHHHHH---------------HHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 33 5556655555553 2333444444443333322 2233333 44455554444
Q ss_pred HHHHC----CCC-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHH
Q 047659 203 QVIQR----GFV-PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN-----VV-TFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 203 ~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
++.+. |.+ .-...+..+...+.+.|++++|.++|+++...-...+ .. .|...+-++...||...|.+.|
T Consensus 140 ~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 140 KAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44332 100 0012233444555666666666666666554321111 11 1222233444556666666666
Q ss_pred HHHHhC
Q 047659 272 NLMMEM 277 (619)
Q Consensus 272 ~~m~~~ 277 (619)
+.....
T Consensus 220 ~~~~~~ 225 (282)
T PF14938_consen 220 ERYCSQ 225 (282)
T ss_dssp HHHGTT
T ss_pred HHHHhh
Confidence 665543
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0014 Score=60.68 Aligned_cols=276 Identities=11% Similarity=0.038 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+...-..+.++.++.+|+..+..+++ |.+.+.|..-+..+..-|++++|.--.++.++..+.-+.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----------- 118 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----------- 118 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc-----------
Confidence 3555566667778888899999988887 777888888888888889999888888877776554433
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHH---------------HHHhCCCC-CCHHhHHH-HHHHHHhcCChhHHHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFA---------------YMSDMGIY-LSPDLVQR-LMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~ 173 (619)
.+....+++...++..+|.+.++ ........ |.-..+.. -..++.-.|++++|...-..+
T Consensus 119 ---~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 119 ---GQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred ---cccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 34444445555555555544443 11111111 11122211 224455566666666666666
Q ss_pred hhCCc-cchHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGF-CVYEFLMNG--LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~-~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+.++ +.+...++. +-..++.+.|...|.+.+..+ |+...-... -.-.+.++.+...
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~-------- 255 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKER-------- 255 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhh--------
Confidence 66665 333333333 335666666666666666553 332211111 0111112222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEM---DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDA 327 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 327 (619)
..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.-.+.....+.. -...+..-..+
T Consensus 256 ----gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 256 ----GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred ----hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 12234677777777777777654 34455556666666667777777777777666654210 11122222334
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 047659 328 YVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~ 347 (619)
+...++|++|.+-+++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777776654
No 162
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.01 E-value=0.012 Score=54.30 Aligned_cols=306 Identities=12% Similarity=0.076 Sum_probs=165.1
Q ss_pred chhHHHHHHHhhcCCCCccHHHH--HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 48 PTPAIQFFKWTHNCVSSPNIAQL--IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 48 ~~~A~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
+..+..+|+.-+ ..+.|-.+ +.+..-.|+-..|+++-.+.-+.-....+.+ ++..-.++-.-.
T Consensus 69 P~t~~Ryfr~rK---RdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepL------------IhlLeAQaal~e 133 (531)
T COG3898 69 PYTARRYFRERK---RDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPL------------IHLLEAQAALLE 133 (531)
T ss_pred cHHHHHHHHHHH---hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHH------------HHHHHHHHHHhc
Confidence 444555555444 22333333 3344456677777777666654433333321 344445555566
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH----HhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL----VDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 198 (619)
|++++|.+-|+.|.. ++++...=++++ .+.|..+.|+.+-++.....|.. +...+...+..|+++.|+
T Consensus 134 G~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 134 GDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred CchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 777777777777754 444433323222 35677777777777777666632 666677777777777777
Q ss_pred HHHHHHHHCC-CCCChhh--HHHHHHHHH---hcCCcchHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHH
Q 047659 199 HMHRQVIQRG-FVPNIVT--CNKILKRLC---INGQIGNASSLFDVLLLVGPKPNVVT-FSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 199 ~~~~~~~~~~-~~~~~~~--~~~ll~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 271 (619)
++.+.-.... +.++..- -..|+.+-. -.-+...|...-.+..+ ..||... -.....++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 7777665542 2333221 222222211 12344555555444444 3455332 223345677777788887887
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 047659 272 NLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR-GLKL-DVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGF 349 (619)
Q Consensus 272 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (619)
+.+-+....|+.. .. -.+.+.|+ .+.+-++..... ..+| +......+..+....|++..|..--+.....
T Consensus 287 E~aWK~ePHP~ia--~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-- 358 (531)
T COG3898 287 ETAWKAEPHPDIA--LL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE-- 358 (531)
T ss_pred HHHHhcCCChHHH--HH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--
Confidence 7777665444432 11 11233333 333333333221 1222 4455556666777777777777666655553
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 047659 350 LPNVISYSILIKGLC-QQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~ 383 (619)
.|....|-.|...-. ..|+-.++...+.+..+..
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 566666666655443 3477777777777776553
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=1.1e-05 Score=55.80 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=53.9
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
....+.+.|++++|+..|+.+.. |.+..++..++.++.+.|++++|...|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45667889999999999999998 8899999999999999999999999999999998875
No 164
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.01 E-value=0.0014 Score=57.28 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred ccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHH
Q 047659 16 NKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKM 90 (619)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (619)
..|..+..+.-....+++.+-.-...-++.|++.+|...|+.+.. |.+ ..+...++-++.+.++++.|....++.
T Consensus 18 ~~cs~~~~~~~~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 18 TGCSGDKDKNGVYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred ccCCcchhhccccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344333333345778999999999999999999999999999887 433 445567888889999999999999999
Q ss_pred HHhcCCchhH
Q 047659 91 VIQFGKTYNF 100 (619)
Q Consensus 91 ~~~~~~~~~~ 100 (619)
+..+|.+++.
T Consensus 98 i~lyP~~~n~ 107 (254)
T COG4105 98 IRLYPTHPNA 107 (254)
T ss_pred HHhCCCCCCh
Confidence 9999988774
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=6.9e-06 Score=60.32 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=64.3
Q ss_pred ccCCchhHHHHHHHhhc--CC--CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CV--SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.+|+++.|+.+|+.+.. |. +...+..++.++.+.|++++|..++++ ...++.+.. ....++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~--------------~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD--------------IHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH--------------HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH--------------HHHHHH
Confidence 36899999999999998 42 345667789999999999999999999 555555544 555779
Q ss_pred HHHHHcCChhhHHHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~ 138 (619)
.++.+.|++++|+++|++.
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999863
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.3e-05 Score=46.84 Aligned_cols=33 Identities=39% Similarity=0.695 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLTDRGLEP 591 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 591 (619)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=3.6e-05 Score=58.35 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+..+...+...|++++|+..++.+.. +.+...+..++.++...|++++|...+++.+...|....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 69 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK------------- 69 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-------------
Confidence 34556667789999999999999887 556678889999999999999999999999987776554
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..++..+...|+++.|...++...+..
T Consensus 70 -~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 70 -AYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 78899999999999999999999987643
No 168
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.97 E-value=1.6e-05 Score=46.80 Aligned_cols=33 Identities=42% Similarity=0.752 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD 522 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 522 (619)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00019 Score=61.06 Aligned_cols=83 Identities=6% Similarity=-0.102 Sum_probs=58.2
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++...+.+.+. ..++..++.+|...|++++|+..++......+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR-----------SYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4555677777888888888888888887765543210 11677888888888888888888888877643
Q ss_pred CCCHHhHHHHHHHHH
Q 047659 144 YLSPDLVQRLMSCLV 158 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~ 158 (619)
. ....+..+..++.
T Consensus 104 ~-~~~~~~~la~i~~ 117 (168)
T CHL00033 104 F-LPQALNNMAVICH 117 (168)
T ss_pred C-cHHHHHHHHHHHH
Confidence 3 4555666666666
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.94 E-value=2.2e-05 Score=54.90 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=44.8
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...|++++|...|++++..+|.+.+ ++..++.+|.+.|++++|.++++++....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPE--------------ARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHH--------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888888888888888888777 777888888888999888888888887543
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.00012 Score=56.86 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=30.3
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.....+-..|+.++|+.+|+.+.. +...+++..++..+...|++++|..++++.+...|+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 344444445555555555555554 111234445555555555555555555555554443
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.93 E-value=2.6e-05 Score=54.76 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDM 141 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 141 (619)
++..|..++..+...|++++|+..|+++++.+|.++. ++..++.+|.+.| ++++|++.++..++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~--------------~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE--------------AYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH--------------HHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999999888777 8899999999999 799999999998875
Q ss_pred C
Q 047659 142 G 142 (619)
Q Consensus 142 ~ 142 (619)
+
T Consensus 68 ~ 68 (69)
T PF13414_consen 68 D 68 (69)
T ss_dssp S
T ss_pred C
Confidence 4
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00012 Score=64.82 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+.+.++|++|...|.+++..+|.++. .|..-+.+|.+.|.++.|++-.+..+..++. ...+|..|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAV--------------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RL 155 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAV--------------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRL 155 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcch--------------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHH
Confidence 34444555555555555554444433 3444444555555555555555544443322 33444445
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+|...|++++|++.|++.++.+|
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCC
Confidence 5555555555555555555444444
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00058 Score=61.03 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCc-cc--hH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS---VGQYYKLCRAMRGKGF-CV--YE 182 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~--~~ 182 (619)
|++...|..|+..|.+.|+++.|...|.+..+..++ |+..+..+..++..+.+ ..++..+|+++++.++ |+ ..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 444447888888888888888888888888776544 77777777776654332 2466677777777666 43 55
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.+...+...|++.+|...++.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55666666677777777777766663
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=0.0003 Score=59.80 Aligned_cols=89 Identities=8% Similarity=-0.091 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~ 188 (619)
.+..++..+...|++++|+..|++.....+.+ .+.++..+..++...|++++|+..++++....++. +..+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 67888888889999999999999998764433 23578888899999999999999999988776622 55555555
Q ss_pred H-------hcCCHHHHHHHHH
Q 047659 189 L-------RKGVIENAFHMHR 202 (619)
Q Consensus 189 ~-------~~~~~~~A~~~~~ 202 (619)
. ..|+++.|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 5 5555554443333
No 176
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.3e-05 Score=45.71 Aligned_cols=32 Identities=34% Similarity=0.556 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTP 521 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 521 (619)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.88 E-value=0.00019 Score=56.79 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=66.3
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
.++.++..+..-....++.|++.+|.+.|+.+.. +-...+...++.++.+.|++++|...+++.++.+|.+++.
T Consensus 5 ~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 5 VPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 5778999999999999999999999999999998 4444666789999999999999999999999999988663
No 178
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.86 E-value=0.026 Score=53.20 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=118.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-HHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY-SAI 529 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l 529 (619)
-..+|...+....+..-.+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+.-+.. -||...| .-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567778888888888899999999998887 6778888888888766 47888888998876654 3454443 556
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 530 IHGLFKGKNISVGLHMFKLMERNGVAPD--IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
+.-+...++-+.|..+|+..... +..+ ..+|..+|..-..-|+...+..+-++|.. +-|-..+.....+.|.-.+
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhc
Confidence 66677888888999999866553 2223 56888999888889999999988888887 5777777788888887777
Q ss_pred ccccc
Q 047659 608 SCLID 612 (619)
Q Consensus 608 ~~~~~ 612 (619)
|+.+.
T Consensus 550 da~~~ 554 (660)
T COG5107 550 DAILP 554 (660)
T ss_pred cccCC
Confidence 66543
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00051 Score=62.30 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=67.2
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQR 152 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 152 (619)
.+.|++++|...|+.++..+|+..-. +.++..++.+|...|++++|...|+.+.+..|. ..+.++..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a-----------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQ-----------PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 55688888888888888877765210 116778888888888888888888888765333 13556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
++.++...|+.+.|...|+.+++..|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777777788888888888888777763
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00085 Score=57.26 Aligned_cols=86 Identities=6% Similarity=-0.104 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
.+..++..+...|++++|...|+++++..+.+. ...+..++.++.+.|++++|+..+.++.+..| +. +..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 688889999999999999999999987654433 46788899999999999999999999998887 22 66777778
Q ss_pred HhcCCHHHHHH
Q 047659 189 LRKGVIENAFH 199 (619)
Q Consensus 189 ~~~~~~~~A~~ 199 (619)
...|+...+..
T Consensus 117 ~~~g~~~~a~~ 127 (172)
T PRK02603 117 HKRGEKAEEAG 127 (172)
T ss_pred HHcCChHhHhh
Confidence 77777555443
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.00021 Score=57.90 Aligned_cols=92 Identities=12% Similarity=0.101 Sum_probs=61.3
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
+......+..+|++++|..+|+-+-. +.+++-|.+++.++-..+++++|...|..+...+++++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------------- 106 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------------- 106 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC-------------
Confidence 33344445667777777777776555 666666777777777777777777777777665544433
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.....+.+|...|+.+.|+..|+.++.
T Consensus 107 -p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 -PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 556667777777777777777777765
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=2.1e-05 Score=55.08 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
++++|++++|++.|+.+.. |.+..++..++.++.+.|++++|...+++++..+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 3578999999999999988 889999999999999999999999999999999988654
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.00031 Score=67.53 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
+.+......++..+....+++.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444555555555555556666665555543 111122334466666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 047659 563 VLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
.|++.+.+.|++..|.++...|...+.-.++.|+.-.+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655554445555555555555544
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00035 Score=52.05 Aligned_cols=77 Identities=22% Similarity=0.470 Sum_probs=45.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMERNGV-APDIAIYNVLLNMLIKEC--------NLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
.|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444566666666666666665 556666666655554432 233455667777776677777777777
Q ss_pred HHHHhh
Q 047659 600 ICGYCS 605 (619)
Q Consensus 600 l~~~~~ 605 (619)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766654
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.00093 Score=52.02 Aligned_cols=99 Identities=9% Similarity=-0.043 Sum_probs=59.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.+...++.++-..|+.++|...|++.+......... ...+..+...+...|++++|..+|+......|.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~-----------~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADR-----------RRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 345566677777777777777777777754333221 015666777777777777777777777664332
Q ss_pred C--CHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 145 L--SPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 145 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+ +......+..++...|+.++|++.+-...
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 12222334445566777777777665543
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0019 Score=60.20 Aligned_cols=59 Identities=7% Similarity=0.029 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc----CCC----CccHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN----CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
+.+......+-..|++++|.+.|..+.. ..+ ...+...+.++ +.+++++|...|++++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 3566666666779999999999998875 111 11122233333 33366666666666654
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00045 Score=64.00 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047659 454 FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRG-IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHG 532 (619)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 532 (619)
.+|..++...-+.+..+.|..+|....+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888889999999999998543 3344455544444 33357788899999999985 56678889999999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 533 LFKGKNISVGLHMFKLMERNGVAPD---IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
+.+.|+.+.|..+|++.... +.++ ...|..++..-.+.|+.+.+.++.+++.+ .-|+......+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHhh
Confidence 99999999999999999875 3333 35999999999999999999999999998 4666666666776664
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.77 E-value=0.01 Score=48.73 Aligned_cols=117 Identities=11% Similarity=0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLL 189 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~ 189 (619)
...|..++...|+..+|...|++...--.-.|+.....+.++....+++..|...++++-+.+| |......+.+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 4456666666666666666666665433334566666666666666666666666666655544 22444555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHH
Q 047659 190 RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNAS 233 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 233 (619)
..|.+..|...|+..+.. -|+....-.....+.+.|+.+++.
T Consensus 172 a~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 172 AQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 555665555555555554 333333333334444555444443
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00061 Score=65.54 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 047659 458 TLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGL 533 (619)
Q Consensus 458 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 533 (619)
+++..|...|..+.++.+++.=...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4444444444444444444444444444555555555555544455544444444444444333444443333333
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.74 E-value=0.0014 Score=53.55 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=106.9
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
.+.....+.=|++.+..-...-.. .++......++..+...|++.+|...|++.+.. + +..+....
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~------------fA~d~a~l 127 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-I------------FAHDAAML 127 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-c------------cCCCHHHH
Confidence 344444444455544433333332 445566678888999999999999999998863 1 22223367
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~ 192 (619)
..+.++....+++..|...++.+-+.++. .++.....+.+.|...|.+.+|...|+......|+. .......+.+.|
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 78888888889999999999988775432 245566778888999999999999999988887744 444455566777
Q ss_pred CHHHHHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQ 206 (619)
Q Consensus 193 ~~~~A~~~~~~~~~ 206 (619)
+.+++..-+..+.+
T Consensus 208 r~~ea~aq~~~v~d 221 (251)
T COG4700 208 RLREANAQYVAVVD 221 (251)
T ss_pred chhHHHHHHHHHHH
Confidence 77776655555444
No 191
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.047 Score=55.80 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=132.7
Q ss_pred cccchhhhHHhhccccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC
Q 047659 2 LLKFKNLLTVWRSINKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM 79 (619)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 79 (619)
+-.+-++...|+ ..+..=++...+..+.+-.+...+..+.+..-++-|+.+.+.-.. ..-.......+.-+.+.|+
T Consensus 306 l~~l~d~l~~w~--~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd 383 (933)
T KOG2114|consen 306 LEDLSDNLIEWS--FDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD 383 (933)
T ss_pred HHHHHHHHHhcC--CcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 345567778888 344444555666778888889999999999999999999887664 1122333456677778899
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
+++|...|-+.+.--. -..++.-|....+...-...++.+.+.|.. +...-..|+.+|.+
T Consensus 384 f~~A~~qYI~tI~~le-------------------~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiK 443 (933)
T KOG2114|consen 384 FDEATDQYIETIGFLE-------------------PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIK 443 (933)
T ss_pred HHHHHHHHHHHcccCC-------------------hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHH
Confidence 9999888887775311 123455555666666677777777777665 55666777888888
Q ss_pred cCChhHHHHHHHHHhhCCc-c-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-C-VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFD 237 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 237 (619)
.++.+.-.+..+... .|. - -....+..+.+.+-.+.|.-+...... .......+ +-..|++++|.+.+.
T Consensus 444 lkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 444 LKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred hcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 888777776666554 222 1 155555666666666666554443322 22222322 334567777777776
Q ss_pred HH
Q 047659 238 VL 239 (619)
Q Consensus 238 ~~ 239 (619)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 66
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.0012 Score=57.97 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=110.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++......+..+...|++.+|...|+++....|.+.-. +.+...++.++.+.|+++.|...+++.++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-----------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA-----------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556677888999999999999999999998875432 1277889999999999999999999998876
Q ss_pred CCCCH--HhHHHHHHHHHhc-----------CChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 143 IYLSP--DLVQRLMSCLVDS-----------NSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 143 ~~~~~--~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
|.... .++..++.++... +...+|+..|+.++...|++ |.. +|.+.+..+...
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~------------~A~~~l~~l~~~- 139 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE------------EAKKRLAELRNR- 139 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH------------HHHHHHHHHHHH-
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH------------HHHHHHHHHHHH-
Confidence 55322 2333344333221 22346777777777776643 333 232222222211
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHH
Q 047659 209 FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 209 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 268 (619)
=...--.+...|.+.|.+..|..-++.+++.-+... ......++.+|.+.|..+.+.
T Consensus 140 ---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 ---LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 011122356778888888888888888887522211 234566778888888777443
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=97.70 E-value=0.00062 Score=55.21 Aligned_cols=100 Identities=8% Similarity=-0.083 Sum_probs=75.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
...+.....+.-+.+.|++++|..+|+-....++.+++ .+..|+.++...+++++|+..|......
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~--------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD--------------YTMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455566677777888888888888888887777766 6677888888888888888888877665
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
++. |+........++...|+.+.|+..|..+...
T Consensus 101 ~~~-dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 LKN-DYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ccC-CCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 543 6666777788888888888888887777663
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.69 E-value=0.00046 Score=62.60 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=81.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+..-+..+.+.|++++|+..|+.+.. |.+ +.++..++.++...|++++|...|++++..+|+++..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~-------- 216 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA-------- 216 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------
Confidence 444444444678999999999999987 555 3688999999999999999999999999998875432
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+.++..++..+...|+.++|...|+.+++..|.
T Consensus 217 ---~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ---ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 116677788899999999999999999986554
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0016 Score=65.63 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=86.7
Q ss_pred CCCCccHHHHHHH--HHccC---ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC--------C
Q 047659 61 CVSSPNIAQLIHV--LLQSD---MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--------K 127 (619)
Q Consensus 61 ~~~~~~~~~l~~~--~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~ 127 (619)
+.++.+|....+. +...+ ..+.|+.+|+++++.+|+... +|..+..++.... +
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~--------------a~A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY--------------AQAEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHHhcCCccHHH
Confidence 5666777655444 44433 477999999999999998765 3444433333221 2
Q ss_pred hhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 128 IDESVEIFAYMSDMG-IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
...+.+..+...... ...++..+..+.......|++++|...+++++..+++. |..+.+.+...|+.++|.+.++++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234444444443321 22355667766666667788888888888888877744 777777777788888888888777
Q ss_pred HHCC
Q 047659 205 IQRG 208 (619)
Q Consensus 205 ~~~~ 208 (619)
...+
T Consensus 480 ~~L~ 483 (517)
T PRK10153 480 FNLR 483 (517)
T ss_pred HhcC
Confidence 7663
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00011 Score=51.57 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~ 178 (619)
.|..++..+...|++++|+..|++.++.++. ++..+..+..++.+.| ++++|++.+++.++.+|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 7788888899999999999999999887655 7788888888998888 68899998888877654
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.001 Score=49.66 Aligned_cols=76 Identities=20% Similarity=0.400 Sum_probs=44.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047659 325 MDAYVGIGDVGRAVQTYDRMLNGGF-LPNVISYSILIKGLCQQG--------RLVEACGLFGQVLIRRLEPSLLTYSSLI 395 (619)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 395 (619)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+++...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666555432 2334566666777666777777777766
Q ss_pred HHHHh
Q 047659 396 DGFCK 400 (619)
Q Consensus 396 ~~~~~ 400 (619)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65543
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.0013 Score=60.71 Aligned_cols=269 Identities=16% Similarity=0.117 Sum_probs=157.4
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHH-------HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQL-------IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
++..=...+.+.|++..-..+|+.+.+ --.+.+..+ +.+|.-.+++++|.++...-+. ..+.+-.
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~q-vGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt-------lar~lgd 90 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQ-VGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT-------LARLLGD 90 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHH-hcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH-------HHHHhcc
Confidence 444455678999999999999999986 333344444 4444455566666654332221 1122222
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh----CCCC-CCHHhHHHHHHHHHhcCCh------------------
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD----MGIY-LSPDLVQRLMSCLVDSNSV------------------ 163 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~------------------ 163 (619)
.+ +...+...|...+--.|.+++|+.+..+-+. .|-. ....++..+..+|...|+.
T Consensus 91 kl-GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 91 KL-GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hh-ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 22 1222566777788888999999877665432 2211 1345677788888766542
Q ss_pred --hHHHHHHHHHhhC----Cc-----cchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcC
Q 047659 164 --GQYYKLCRAMRGK----GF-----CVYEFLMNGLLRKGVIENAFHMHRQVIQR----GF-VPNIVTCNKILKRLCING 227 (619)
Q Consensus 164 --~~A~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~ 227 (619)
+.|.+.|..-++. +. -.|..+...|.-.|+++.|+..++.-+.. |- ..-...+..+..++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 2234444332221 11 11555555556677888888776553332 21 122345666777788888
Q ss_pred CcchHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcC
Q 047659 228 QIGNASSLFDVLLL----VGP-KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM-----DLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 228 ~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~ 297 (619)
+++.|.+.|+.... .|- .....+..+|...|.-..++++|+..+..-... +..-....+-+|..++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 88888888776442 221 123445566777777777778887776653321 11124456667777777788
Q ss_pred CHHHHHHHHHHHHH
Q 047659 298 RLKEGNELLLTALD 311 (619)
Q Consensus 298 ~~~~a~~~~~~~~~ 311 (619)
..++|+.+.+.-++
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 88887777666554
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.062 Score=49.87 Aligned_cols=285 Identities=18% Similarity=0.150 Sum_probs=170.7
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL--VDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENA 197 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A 197 (619)
-.|+-..|.++-.+..+. +..|...+..++.+- .-.|+++.|.+-|+.|... |++ ...+.----+.|..+.|
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHH
Confidence 457777888777766533 333444444444433 4578888888888888753 322 33333334467888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCChh--hHHHHHHHHH---hcCCHHHHHHHH
Q 047659 198 FHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-PKPNVV--TFSTLINAFC---KEAKLEKAFQLY 271 (619)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~ 271 (619)
.+.-+..-..- +.-.-.+...+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-. -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88888777663 2334466778888888888888888887765432 233332 1222332211 123455666555
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC
Q 047659 272 NLMMEMDLVPDLI-IYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG-GF 349 (619)
Q Consensus 272 ~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~ 349 (619)
.+..+ +.||.. .-....+++.+.|+..++-.+++.+-+....|+. + .+..+.+.|+.. ..-++...+. .+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta--~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTA--LDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcH--HHHHHHHHHHHhc
Confidence 55444 345532 2233456677888888888888888887555543 2 233345666532 2222222110 12
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCC
Q 047659 350 LP-NVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK-SGKLRDGFSLYDNMIKRGLKP 421 (619)
Q Consensus 350 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~ 421 (619)
+| +..+.-.+..+....|++..|..--+...+. .|....|-.+.+.-.. .|+-.++...+.+..+.--.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 23 4556666777777888888887776666554 6677777666665443 488888888888877653333
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.096 Score=52.40 Aligned_cols=257 Identities=14% Similarity=0.046 Sum_probs=137.9
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh-HHHHHHhhcCCCcccHHHHHHHHHHc
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN-FFRLFRDSLGDFGCDYSFLIENYVRI 125 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 125 (619)
..++|.++.+ +.|.++.|..++...++.-.++.|+..|-+.-.-.+-... .++.+.+.. ... +..-.--
T Consensus 678 gledA~qfiE---dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~-----~q~--aei~~~~ 747 (1189)
T KOG2041|consen 678 GLEDAIQFIE---DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE-----QQR--AEISAFY 747 (1189)
T ss_pred chHHHHHHHh---cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH-----HHh--HhHhhhh
Confidence 4556666544 3678899999999888888888888888776543332111 111111110 111 1122234
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchHHHHHHHHhcCCHHHHHHH
Q 047659 126 GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~ 200 (619)
|++++|.++|-.+..++ ..+..+.+-|++-+..++++.--.... +.++.+...+.....++.|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887774432 234555566676666666554222211 2377777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
+..-... ...+.++.+..++++-+.+...+ +.+....-.+...+...|--++|.+.|-+...
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---- 880 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---- 880 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----
Confidence 7544221 12445555555555544444433 23444555666666677766666666533221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 281 PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL-----------KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 281 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
| ...+..|...++|.+|.++-+...-..+ -.+..+ ..-|..+.+.|.+-.|-+++.+|.+
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 1234455556666666555433211000 001111 1124456667776666666666654
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=0.0001 Score=41.87 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRG 588 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 588 (619)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666665544
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.00062 Score=63.07 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=53.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH-cCChhhHHHHHHHHHhCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-IGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 145 (619)
|+.+.+...+.+..+.|+.+|.++......+++ +|...+..-.. .++.+.|..+|+...+.- ..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~--------------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~ 68 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH--------------VYVAYALMEYYCNKDPKRARKIFERGLKKF-PS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH--------------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH--------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC
Confidence 444445555555555555555555433222232 33333333222 334444555555555442 22
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--c----chHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--C----VYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
++..|..-+..+...++.+.|+.+|++.+..-+ . .|...+..-.+.|+.+...++..++.+
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555544322 1 144444444444444444444444443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.016 Score=50.49 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
-+.++..+.-.|.+.-....+.++++..++.++.....+++.-.+.|+.+.|...|++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444444445555555555555555444444555555555555555555555555443
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=0.00014 Score=41.24 Aligned_cols=29 Identities=31% Similarity=0.724 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.024 Score=52.95 Aligned_cols=239 Identities=12% Similarity=-0.025 Sum_probs=155.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC-
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD- 110 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~- 110 (619)
....-...+..-|++++|+--.++... +..+.........+...++..+|...++..-.. ...+.+..+....+.
T Consensus 85 yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~--~~anal~~~~~~~~s~ 162 (486)
T KOG0550|consen 85 YYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAY--KAANALPTLEKLAPSH 162 (486)
T ss_pred hhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhh--HHhhhhhhhhcccccc
Confidence 344445556667888888888877766 777777788888888888888888887732211 112222111111111
Q ss_pred --Cc--c-cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc-----
Q 047659 111 --FG--C-DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV----- 180 (619)
Q Consensus 111 --~~--~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 180 (619)
.+ . .-..-+.++.-.|+.++|.+.--.+++.+.. +......-..++--.++.+.|+..|++.+..+|+-
T Consensus 163 s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 163 SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh
Confidence 11 0 2223355677789999999999999887544 66666666666677889999999999999999832
Q ss_pred ----------hHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC
Q 047659 181 ----------YEFLMNGLLRKGVIENAFHMHRQVIQRG---FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN 247 (619)
Q Consensus 181 ----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 247 (619)
+..-..-..+.|++..|.+.+.+.+..+ ..++...|.....+..+.|+..+|+.--+..... .+.
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~s 319 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSS 319 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHH
Confidence 1222233446788888888888887763 3444555666666777788888888887777642 211
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 248 -VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 248 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
...|..-..++...++|++|.+-|+...+.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333334555667788888887777664
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.52 E-value=0.00061 Score=48.35 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..++.+.+++++|.+.+++++..+|.++. .+...+.++.+.|++++|.+.|+..++.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE--------------LWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch--------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 35667777777777777777777766555 6677777777777777777777777775543
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.002 Score=56.86 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=81.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL- 145 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 145 (619)
....+.-+.+.|++..|...|...++.+|+..- .+-++.+|++++..+|++++|...|..+.+..++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-----------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-----------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-----------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 455666677888899999999999998876432 11278899999999999999999999888764442
Q ss_pred -CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc
Q 047659 146 -SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV 180 (619)
Q Consensus 146 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 180 (619)
-+.++..+..+..+.|+.++|...|+.+.++.|++
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 46788888888888999999999999988888843
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0098 Score=60.00 Aligned_cols=153 Identities=10% Similarity=-0.044 Sum_probs=104.5
Q ss_pred CCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhc--------CCHHHHHHHHHH
Q 047659 448 TLIPNLFIFNTLMDGCCRLK-----RATDTVKLFMLMGMYNIKPD-VITHTVLIRGIASQ--------GSLSSAILLFFQ 513 (619)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 513 (619)
..+.+...|...+.+..... +...|..+|++..+. .|+ ...|..+..++... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34457778888887765432 366889999988876 354 34455444433322 123344444444
Q ss_pred HHHC-CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 514 MLKR-GLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 514 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.... ....+...|..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 233455677777777777899999999999999964 6888999999999999999999999999987 6777
Q ss_pred HHHHHHHHHHHhhc
Q 047659 593 IITYNTIICGYCSL 606 (619)
Q Consensus 593 ~~~~~~ll~~~~~~ 606 (619)
..||...=+.-..+
T Consensus 486 ~pt~~~~~~~~f~~ 499 (517)
T PRK10153 486 ENTLYWIENLVFQT 499 (517)
T ss_pred CchHHHHHhccccc
Confidence 77765544443333
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.003 Score=58.78 Aligned_cols=135 Identities=10% Similarity=-0.033 Sum_probs=92.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCC----chhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGK----TYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.-++.+.+.|++..|...|++++..... +.+....... ---..+..|+.+|.+.+++..|+...+..+..++.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA---LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH---HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 4567888999999999999998875331 1111000000 00016788888888888888888888888887644
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIE-NAFHMHRQVIQR 207 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 207 (619)
|+.++..-..+|+..|+++.|+..|+++++..|+. -..++.+.-+..... ...++|..|...
T Consensus 290 -N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 290 -NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888888888888888888888888888822 555555554444443 335566666543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.027 Score=55.52 Aligned_cols=228 Identities=13% Similarity=0.019 Sum_probs=118.3
Q ss_pred HHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
.-+..+..+|.+++|.+.--- --....|..++...+..=.++-|++.|.+.... -|.
T Consensus 561 ~~m~q~Ieag~f~ea~~iacl---gVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------------~~L 617 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQIACL---GVTDTDWRELAMEALEALDFETARKAYIRVRDL--------------------RYL 617 (1081)
T ss_pred ccchhhhhccchhhhhccccc---ceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------------HHH
Confidence 335566778888887664321 234566778877777777777777777766442 222
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (619)
+-+.-++++.+.|..|+.. .++..++-+|.+.+|-++|.+. |.-.+
T Consensus 618 -------------~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~------------------G~enR 663 (1081)
T KOG1538|consen 618 -------------ELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRS------------------GHENR 663 (1081)
T ss_pred -------------HHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHc------------------Cchhh
Confidence 3334466677776656554 3456666778888877776553 33344
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH--------
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF-------- 268 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 268 (619)
|+++|..+.-.+ ...-+...|..++-..+..+-.+- ..+..--.+....+...|+.++|.
T Consensus 664 AlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW 731 (1081)
T KOG1538|consen 664 ALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGW 731 (1081)
T ss_pred HHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccH
Confidence 444443332110 111122222222222221111000 000000011122223333333333
Q ss_pred -----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 269 -----QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 269 -----~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
++-+++.. .+..+...+...+.+...+..|-++|..|-+. ..++......++|++|..+-+.
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 33222221 23445555555566667777788888777532 3566777788888888888777
Q ss_pred HHh
Q 047659 344 MLN 346 (619)
Q Consensus 344 ~~~ 346 (619)
..+
T Consensus 799 hPe 801 (1081)
T KOG1538|consen 799 HPE 801 (1081)
T ss_pred Ccc
Confidence 665
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.39 E-value=0.13 Score=48.86 Aligned_cols=454 Identities=12% Similarity=0.126 Sum_probs=213.5
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccH-----HH-HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNI-----AQ-LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~-----~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
.+.+++++.+|...|..+-+ ..++..+ .+ +++++ -.++.+.-...+...-+..|..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s--------------- 78 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKS--------------- 78 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCc---------------
Confidence 35678999999999998886 2222222 22 22333 3445555555555554444422
Q ss_pred ccHHHHHH--HHHHcCChhhHHHHHHHHHhC--CCCC------------CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 113 CDYSFLIE--NYVRIGKIDESVEIFAYMSDM--GIYL------------SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 113 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.|..+.. .+-+.+.+..|++.+...... +..| +...-+..+.++.+.|++.+++.+++++...
T Consensus 79 -~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 79 -AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred -hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3444433 355788999999988877654 2221 1111133445566777777777766665432
Q ss_pred C------c--cchHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Q 047659 177 G------F--CVYEFLMNGLLRKGVIENAFHMHRQVIQR---GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 177 ~------~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
- . +.|+.++-.+.+. .|-++.+. .+-|+ |--++-.|.+. ...++.-.-...-
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFI 220 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhC
Confidence 1 1 2244433333221 12222111 11111 22222222221 0001100000122
Q ss_pred CChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCH
Q 047659 246 PNVVTFSTLINAFCKEA--KLEKAFQLYNLMMEMDLVPDLI-IYSILIDGLFKAGRLKEGNELLLTALDRGLK----LDV 318 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 318 (619)
|.......++....-.. ...--.++++.-...-+.|+.. +...+...+.. +.+++..+.+.+....+. -=.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333443332211 1222233333334444555533 23333333333 455555555544433211 124
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-------HHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 047659 319 VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILI-------KGLCQ----QGRLVEACGLFGQVLIRRLEPS 387 (619)
Q Consensus 319 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 387 (619)
.+|..++....+.++...|.+.+.-+... .|+...-..++ +..+. .-+...-+.+++......+...
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH
Confidence 56777788888888888888888777654 34433222221 11111 1112233444444443322211
Q ss_pred HHHHHHHH---HHHHhcCC-hHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047659 388 LLTYSSLI---DGFCKSGK-LRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGC 463 (619)
Q Consensus 388 ~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (619)
.....++ .-+-+.|. -++|+.+++.+.+-. .-|..+-+.+. .+.+ ..|...+
T Consensus 377 -QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~------------~fvK-------q~Y~qaL--- 432 (549)
T PF07079_consen 377 -QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVF------------LFVK-------QAYKQAL--- 432 (549)
T ss_pred -HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHH------------HHHH-------HHHHHHH---
Confidence 1111122 12223343 667777777766541 11211111110 0000 0111111
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047659 464 CRLKRATDTVKLFMLMGMYNIKPDV----ITHTVLIRG--IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537 (619)
Q Consensus 464 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 537 (619)
......+-..+-+-+.+.|++|-. ..-|.+.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....
T Consensus 433 -s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 433 -SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred -hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHh
Confidence 123344444444555666766533 233444443 3457888888766655553 5788888888888888888
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVL 564 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 564 (619)
++++|..++..+ +|+..+++.=
T Consensus 510 ~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 510 RYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred hHHHHHHHHHhC-----CCchhhHHHH
Confidence 899998888765 4566655543
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.38 E-value=0.041 Score=46.63 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=122.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+..|-..|-++-|+.-|.+.+...|+-++ +|+.|+--+...|+++.|.+.|+...+.+|.-+-...
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~--------------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPE--------------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHH--------------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 34555667788888888888888888777 8999999999999999999999999998766444444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ 228 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 228 (619)
+.-+. +---|++..|.+-+...-..+| |+|..+--... ..-++.+|..-+.+--+ ..|..-|...|-.+.- |+
T Consensus 138 NRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gk 212 (297)
T COG4785 138 NRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GK 212 (297)
T ss_pred cccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hh
Confidence 44333 3367899999999998888888 77666554444 34566666654433222 2355555544433321 22
Q ss_pred cchHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 229 IGNASSLFDVLLLVGPKPN-------VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.. ...+++.+... ...+ ..||--+...+...|+.++|..+|+.....
T Consensus 213 iS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 213 IS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 21 12334444322 1111 235666777777788888888888877664
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.21 Score=50.19 Aligned_cols=204 Identities=15% Similarity=0.046 Sum_probs=113.2
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHH----------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEF----------LMNGLLRKGVIENAFHMHRQVIQRGFVPN 212 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 212 (619)
.|.+..|..++..-...-.++-|...|-+...-.. ..... -...-.--|++++|.+++-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 46788888888776666666777666655432211 00111 1112223467777777776665442
Q ss_pred hhhHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 213 IVTCNKILKRLCINGQIGNASSLFDVLLLV-GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILID 291 (619)
Q Consensus 213 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 291 (619)
..+..+.+.|++-...+++..--.. +-..-...|+.+...++....|++|.+.|..-.. -...+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 3445555666665555554332100 0001134577777777777777777777755432 123455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVE 371 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 371 (619)
++.+..++++.+.+.+.+ +-+....-.+..++...|.-++|.+.|-+-.. | ..-+..|...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 555555555555444433 23555666777778888887777776644322 1 123456666777777
Q ss_pred HHHHHHHH
Q 047659 372 ACGLFGQV 379 (619)
Q Consensus 372 a~~~~~~~ 379 (619)
|.++-+..
T Consensus 897 avelaq~~ 904 (1189)
T KOG2041|consen 897 AVELAQRF 904 (1189)
T ss_pred HHHHHHhc
Confidence 77665443
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.006 Score=51.87 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=68.0
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047659 245 KPNVVTFSTLINAFCK-----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVV 319 (619)
Q Consensus 245 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 319 (619)
..+-.+|..++..+.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3466667777776654 46677777777888888888888888888877654 2211 11 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
.+-++..- --.+-+-|++++++|...|+-||..++..++..+++.+..
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 11111111 1234566778888888888888888888888887766643
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.31 E-value=0.14 Score=47.46 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=75.5
Q ss_pred HHccCChhHHHHHHHHHHHhc-CCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhC--------CC
Q 047659 74 LLQSDMRDVASHVFDKMVIQF-GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDM--------GI 143 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~ 143 (619)
..++|+++.|..++.++-... ..+++....+.. .+...+......+ +++.|..++++..+. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~-------~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR-------VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 457888999999988887754 333333222333 5666677777777 999998888877543 11
Q ss_pred CCCH-----HhHHHHHHHHHhcCChh---HHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 144 YLSP-----DLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 144 ~~~~-----~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.|+. .++..++.+|...+.++ +|..+++.+....++ ++..-++.+.+.++.+.+.+.+..|+..
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2222 23445556666555543 344555555444442 2445555555566666666666666655
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.29 E-value=0.049 Score=47.92 Aligned_cols=187 Identities=10% Similarity=-0.036 Sum_probs=118.6
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
.+..+..-+...++.|++++|...|+.+..+.|.++- ..++...++.++-+.+++++|+..+++.....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-----------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-----------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3455666777788999999999999999998886543 23377788889999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhc-------CCh---hHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 143 IYLSPDLVQRLMSCLVDS-------NSV---GQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVP 211 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~-------~~~---~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 211 (619)
|......|-.-+.+++.- .+. ..|+.-|+.++.+-|++ |..-++.-. ..+...+.
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---------~~~~d~LA----- 167 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---------VKLNDALA----- 167 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH---------HHHHHHHH-----
Confidence 654333444444444311 111 34666667777777754 433222110 11111110
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 212 NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV---TFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 212 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.--..+.+.|.+.|.+..|..-++.+.+. .+-... .+-.+..+|...|-.++|.+.-+-+...
T Consensus 168 --~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 168 --GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 01123556777888888888888888775 222222 3445567777888888877776666544
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.26 E-value=0.004 Score=49.45 Aligned_cols=85 Identities=13% Similarity=0.025 Sum_probs=61.1
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.++..+..-+...++.|++++|.+.|+.+..+.|...- ...+...|+.+|.+.|++++|+..+++.++.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-----------a~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-----------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455666777788899999999999999888775432 2237788888999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHH
Q 047659 142 GIYLSPDLVQRLMSCL 157 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~ 157 (619)
+|...-..|-....++
T Consensus 77 hP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGL 92 (142)
T ss_pred CCCCCCccHHHHHHHH
Confidence 7663333333333333
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.001 Score=47.22 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...|.+.++++.|++++++++..+|. ++..|...+.++.+.|++++|.+.|+++.+.+|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677888888888888888887655 777888888888888888888888888887777
No 219
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.012 Score=50.17 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=56.8
Q ss_pred CHhhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 047659 452 NLFIFNTLMDGCCRL-----KRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITY 526 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 526 (619)
+..+|..+++.|.+. |..+=....++.|.+.|+..|..+|+.|++.+=+ |.+ .|... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH-H
Confidence 555666666666532 3444444555566666666666666666655432 111 11100 0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 527 SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
.++.-- .-.+-+-|++++++|..+|+.||..++..++..+.+.+.
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011000 112345677888888888888888888888888766654
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.037 Score=49.59 Aligned_cols=122 Identities=13% Similarity=0.037 Sum_probs=57.7
Q ss_pred HHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 40 ANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
..+...|++.+|...|+.+.. +.+..+...++..+...|+.+.|..++..++.......-. ....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~-------------~l~a 208 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH-------------GLQA 208 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH-------------HHHH
Confidence 344555666666666665555 4455555556666666666666666555554432221100 1111
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
-+..+.+.....+...+-++.-. +|. |...-..+...+...|+.+.|.+.+-.+.++
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aa-dPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAA-DPD-DVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHh-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22333333444433333333322 122 4555555555555555555555555554443
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.007 Score=53.58 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=84.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+......+.+.|++.+|.+.|..... ...+.++.-|+..+..+|++++|...|..+++..|+++.+
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-------- 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-------- 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC--------
Confidence 366777777889999999999998887 4555677789999999999999999999999998876542
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+.....|+....+.|+.++|...|+.+++.-|.
T Consensus 215 ---pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 215 ---PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 127788899999999999999999999987554
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.068 Score=47.96 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=94.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
.+.-..-+......|++.+|..+|..+....+.+.+ +-..++.+|...|+++.|..++..+.....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~--------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE--------------AKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch--------------HHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 333444555667888999999999999888777755 677888889999999999998888754322
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG-FVPNIVTCNKI 219 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l 219 (619)
.........-+..+.+.....+...+-.++. .+| |. -..+...+...|+.+.|.+.+-.+++++ -..|...-..+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 2122222233444444444444444433333 334 33 6666677777777777777666665552 13344455566
Q ss_pred HHHHHhcCCcch
Q 047659 220 LKRLCINGQIGN 231 (619)
Q Consensus 220 l~~~~~~~~~~~ 231 (619)
+..+.-.|.-+.
T Consensus 279 le~f~~~g~~Dp 290 (304)
T COG3118 279 LELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCCH
Confidence 666555554433
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.016 Score=47.79 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+...++..+...|++++|..+++.+...+|. +...+..++.+|...|+...|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4556666677777777777777777776544 66777777777777777777777777654
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.07 E-value=0.38 Score=47.77 Aligned_cols=421 Identities=11% Similarity=0.064 Sum_probs=220.3
Q ss_pred HHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhh
Q 047659 52 IQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDE 130 (619)
Q Consensus 52 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 130 (619)
....+.... ..+...|..++.--......+.++..+..++...|-... .|...+..=.+.|..+.
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~g--------------yW~kfA~~E~klg~~~~ 97 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYG--------------YWKKFADYEYKLGNAEN 97 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHH--------------HHHHHHHHHHHhhhHHH
Confidence 333443333 455566666655554555557778888888888776554 55666666677888899
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHhhCCc-----cc-hHHHHHHHHhcCCHHHHHHHHHH
Q 047659 131 SVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMRGKGF-----CV-YEFLMNGLLRKGVIENAFHMHRQ 203 (619)
Q Consensus 131 A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-----~~-~~~l~~~~~~~~~~~~A~~~~~~ 203 (619)
+..+|++.+.. ++.+...|......+. ..|+.+.....|+++..... +. |...+..-...+++.....+++.
T Consensus 98 s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeR 176 (577)
T KOG1258|consen 98 SVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYER 176 (577)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999988875 4457777766665554 46777778888888766443 23 77777777788888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHh---c------CCcchHHHHHHHHHhC---C-CCCChhhHHHHHHHHHh-cCCHHHHHH
Q 047659 204 VIQRGFVPNIVTCNKILKRLCI---N------GQIGNASSLFDVLLLV---G-PKPNVVTFSTLINAFCK-EAKLEKAFQ 269 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~---~------~~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~-~~~~~~a~~ 269 (619)
+++. ...-++..-..|.+ . ...+++.++-...... + ..+....+..-+.-... .+..+++..
T Consensus 177 ilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~ 252 (577)
T KOG1258|consen 177 ILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKT 252 (577)
T ss_pred HHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHH
Confidence 8865 22233333322221 1 1111221111111100 0 00000000000000000 000111111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 270 LYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG-------LKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
+..+... .--..+-...........++.-...- ..++..+|...+..-...|+++.+.-+|+
T Consensus 253 ~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 253 ILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred HHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 1100000 00001111111222222233322221 12356678888888889999999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
...-. +..-...|-..+.-....|+.+.|..++....+-..+..+.+--.-...+-..|+++.|..+++...+.- |+
T Consensus 322 rcli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg 398 (577)
T KOG1258|consen 322 RCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PG 398 (577)
T ss_pred HHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cc
Confidence 87642 1122334555555555568888888877766655433233222222223345689999999999888762 44
Q ss_pred HhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHH---HHHHHHhhCCCCCCHhhHHHHHHH--
Q 047659 423 AVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTV---KLFMLMGMYNIKPDVITHTVLIRG-- 497 (619)
Q Consensus 423 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-- 497 (619)
... .-..-+....+.|+.+.+. .++...... .-+..+.+.+.--
T Consensus 399 ~v~-----------------------------~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 399 LVE-----------------------------VVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFA 447 (577)
T ss_pred hhh-----------------------------hHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHH
Confidence 221 0111122233455555554 222222221 1222222222222
Q ss_pred ---HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047659 498 ---IASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537 (619)
Q Consensus 498 ---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 537 (619)
+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23357888888888888874 4667777888877776555
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.03 E-value=0.0012 Score=40.95 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=33.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
+.++..++..+.+.|++++|++.|+++++.+|++++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 457889999999999999999999999999999887
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.03 E-value=0.0055 Score=58.57 Aligned_cols=69 Identities=7% Similarity=-0.113 Sum_probs=60.7
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH-HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF-FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
|.++.++..++.++...|++++|...|++++..+|+..++ . +|+.++.+|...|++++|+..+++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~------------A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQA------------AYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888999999999999999999999999998886541 1 58999999999999999999999998
Q ss_pred hC
Q 047659 140 DM 141 (619)
Q Consensus 140 ~~ 141 (619)
+.
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 75
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.53 Score=47.97 Aligned_cols=337 Identities=13% Similarity=0.084 Sum_probs=173.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCC--CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCV--SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....++..+...+.+..|++..+++-.|. ..+.+..-+....++.+.. -...++.+.++... . ..+
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~----------~-~~~ 506 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSA----------K-LTP 506 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcc----------c-CCC
Confidence 34567888889999999999999988521 1455555555555543111 12222333222111 0 012
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC----CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY----LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
...|..++.-....|+++-|..+++.=...+.. .+-.-....+.-..+.|+.+....++..+...- .....
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~-----~~s~l 581 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL-----NRSSL 581 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-----HHHHH
Confidence 337888999899999999999887644222111 000011112222233344443333333322211 01111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHH--HHHhC-CCCCChhhHHHHHHHHHhcCCH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFD--VLLLV-GPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~--~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
+....+...|..++.+..+.. +.. .+-+.|- .++-.++...|. ..... .+.+-.........++.+....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 122233444555555554431 111 1111121 222222222111 10000 0111122223333344433321
Q ss_pred ----------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 047659 265 ----------EKAFQLYNLMMEM-DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGD 333 (619)
Q Consensus 265 ----------~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 333 (619)
.+-+++.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..++
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhh
Confidence 1222223333222 333334455566666778888888888876665 4588888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 334 VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
+++-.++-.... ++.-|.-+..+|.+.|+.++|.+++...... .-...+|.+.|++.+|.++--+
T Consensus 731 weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 731 WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 887666555443 3555777888899999999998888654321 1456788888888888766543
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.98 E-value=0.031 Score=53.72 Aligned_cols=117 Identities=8% Similarity=-0.104 Sum_probs=81.2
Q ss_pred CchhHHHHHHHhh---c--CCCCccHHHHHHHHHc---------cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCc
Q 047659 47 NPTPAIQFFKWTH---N--CVSSPNIAQLIHVLLQ---------SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFG 112 (619)
Q Consensus 47 ~~~~A~~~~~~~~---~--~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (619)
..+.|+.+|..+. + |....++..++..+.. .....+|.++-+++++.++.++-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------------- 339 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------------- 339 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH-------------
Confidence 3457888898888 4 6667777776655532 23445667777777777766554
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+...++.+..-.|+++.|...|++....+|. ...+|......+.-.|+.++|.+.+++..+.+|
T Consensus 340 -a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 340 -ILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred -HHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 5566666667777788888888888776544 556666666666777888888888888777777
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.22 Score=43.70 Aligned_cols=130 Identities=10% Similarity=0.056 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSIL-----ID 291 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-----l~ 291 (619)
+.++..+.-.|.+.-...++.+.++..++.++.....+++.-.+.||.+.|...|++..+..-..|..+++.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4444555555566666666666666555555666666666666666666666666655443222222222222 12
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG 347 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 347 (619)
.+.-.+++..|...+.++...+.. |+...|.-.-+..-.|+...|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233344555555555555544322 3333332222233345555555555555553
No 230
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.39 Score=45.24 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
+.+..+.-+...|+...|.++-++.. -|+...|...+.+++..+++++-..+-.. +-.+.-|..++++|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778899988888877664 58999999999999999999987765432 224477999999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 047659 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
+.|+..+|..++.++ + + ..-+..|.+.|++.+|.+..-+.. |...+..+...+....+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~ 306 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNND 306 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCCh
Confidence 999999999988872 2 2 345678899999999987654432 34444444444443333
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.88 E-value=0.033 Score=42.80 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.+...|+.+.|++.|.+.+. |..+.+|+..+..+.-+|+.++|..-++++++.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34445555555555555554 555555555555555555555555555555554
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.87 E-value=0.16 Score=49.13 Aligned_cols=142 Identities=14% Similarity=0.067 Sum_probs=98.4
Q ss_pred ChhHHHHHHHHHH---HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH---------cCChhhHHHHHHHHHhCCCCCC
Q 047659 79 MRDVASHVFDKMV---IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR---------IGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 79 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
..+.|..+|.+++ ..+|.... .|..+..++.. ..+..+|.++.++..+.++. |
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~--------------a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTE--------------CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-D 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHH--------------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-C
Confidence 4567888999999 55554433 33333333222 23456788888889888765 8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHH
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV---TCNKIL 220 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll 220 (619)
+.+...+..++.-.++++.|..+|++....+|+. |....-.+.-.|+.++|.+.+++..+.. |... .....+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~ 415 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECV 415 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHH
Confidence 9999999988888888999999999999999943 7777777778899999999999987763 3222 222233
Q ss_pred HHHHhcCCcchHHHHHHH
Q 047659 221 KRLCINGQIGNASSLFDV 238 (619)
Q Consensus 221 ~~~~~~~~~~~A~~~~~~ 238 (619)
+.|+. ...+.|.+++-+
T Consensus 416 ~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 416 DMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHcC-CchhhhHHHHhh
Confidence 34433 345666666544
No 233
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.084 Score=44.82 Aligned_cols=179 Identities=13% Similarity=-0.071 Sum_probs=102.5
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
.-|-.+.|.-=|.+... |..+.+++-++--+...|+++.|.+.|+...+.+|...- ++..-+-+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y--------------a~lNRgi~ 142 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY--------------AHLNRGIA 142 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH--------------HHhcccee
Confidence 34455556656666555 778888888888888999999999999999988876422 22222333
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCChhHHHHHH-HHHhhCCccchHH-HHHHHHhcCCHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPD--LVQRLMSCLVDSNSVGQYYKLC-RAMRGKGFCVYEF-LMNGLLRKGVIENA 197 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~-l~~~~~~~~~~~~A 197 (619)
+---|+++-|.+-|...-+.++. ||. .|..+.. ..-++.+|..-+ ++....+.+-|.. ++..|...=..+.+
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l 218 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETL 218 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHH
Confidence 44457888888777777666544 332 3333332 223455555433 3333332222322 22233322222222
Q ss_pred HHHHHHHHHCCC------CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 198 FHMHRQVIQRGF------VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 198 ~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
. +.+....- ..=+++|-.+...+...|+.++|..+|+-....+
T Consensus 219 ~---~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 219 M---ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred H---HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2 22221110 1124567778888888888888888888776543
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.82 E-value=0.027 Score=54.01 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP---DLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
.++.++.+|.+.|++++|+..|++.++.+|. +. .+|+.+..+|...|+.++|++.++++++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999997655 33 35999999999999999999999998875
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.012 Score=54.99 Aligned_cols=123 Identities=11% Similarity=-0.005 Sum_probs=95.2
Q ss_pred HHHHHccCCchhHHHHHHHhhc-----------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-----------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF 101 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 101 (619)
...+.+.|++..|...|+.+.. ..-...+..++.++.+.+.+..|+..-++.+..+|++.-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-- 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-- 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh--
Confidence 4467889999999999998665 111123356788889999999999999999999988877
Q ss_pred HHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHhhC
Q 047659 102 RLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-QYYKLCRAMRGK 176 (619)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~ 176 (619)
+...-++++...|+++.|+..|+.+++..|. |-.+-..++.+-.+...+. ...++|..|...
T Consensus 293 ------------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ------------ALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred ------------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6678889999999999999999999997655 5666666666665554443 447777777543
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.012 Score=48.59 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHccCCchhHHHHHHHhhc-------CC-CCccH----------------HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 42 LIKTNNPTPAIQFFKWTHN-------CV-SSPNI----------------AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~-------~~-~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
....++++.+.+.++.+.. +. ....| ..++..+...|++++|...+++++..+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 3556777777777777666 11 11123 245566778999999999999999999987
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH-----hCCCCCCHHhHH
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS-----DMGIYLSPDLVQ 151 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 151 (619)
.. .|..++.+|.+.|+...|.++|+.+. +.|..|++.+-.
T Consensus 96 E~--------------~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 96 EE--------------AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HH--------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 76 89999999999999999999999884 457778777643
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.02 Score=53.29 Aligned_cols=282 Identities=16% Similarity=0.112 Sum_probs=140.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHH--hhC--Cc---cc--hHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAM--RGK--GF---CV--YEFLM 185 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~--~~~--~~---~~--~~~l~ 185 (619)
..-+++.|+....+.+|+.+++.|.. |.. +|..+..+|.-.+++++|++....= +.+ +. .. ...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34578888888888888888887654 433 3455566666666777777654331 111 10 11 34444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 186 NGLLRKGVIENAFHMHRQVIQ----RGF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
..+--.|.+++|.-...+-+. .|- ......+..+..+|...|+--....- .+.|-.++.+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p----ee~g~f~~ev----------- 167 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP----EEKGAFNAEV----------- 167 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh----hhcccccHHH-----------
Confidence 455555666666544333222 110 11122333344444433321100000 0000000000
Q ss_pred cCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHc
Q 047659 261 EAKLEKAFQLYNLMM----EMDL-VPDLIIYSILIDGLFKAGRLKEGNELLLTAL----DRGLK-LDVVVFSSVMDAYVG 330 (619)
Q Consensus 261 ~~~~~~a~~~~~~m~----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~ll~~~~~ 330 (619)
...++.|.++|.+-. +.|- -.-...|..|-..|.-.|+++.|....+.-. +.|-+ .....+..+.+++.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 001233333333221 1110 0112345566666666777777776654432 22211 123355667777777
Q ss_pred CCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHh
Q 047659 331 IGDVGRAVQTYDRMLNG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR-----RLEPSLLTYSSLIDGFCK 400 (619)
Q Consensus 331 ~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~ 400 (619)
.|+++.|.+.|+..... |- .....+.-.|...|.-..+++.|+.++..-..- ........+.++..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 78888887777654321 11 122334445666666666777777766543211 112245567778888888
Q ss_pred cCChHHHHHHHHHHHH
Q 047659 401 SGKLRDGFSLYDNMIK 416 (619)
Q Consensus 401 ~~~~~~a~~~~~~~~~ 416 (619)
.|..++|+.+.....+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888887776665444
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.18 Score=43.81 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=20.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
..-+..+....++++|..-+.++.+....+
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~~yEnn 64 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASKGYENN 64 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 334456667788888888888877654443
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.22 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.+......|..+|.++.|-..+++.-+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 556666678888888887777776643
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.65 E-value=0.079 Score=40.85 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=74.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD- 148 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 148 (619)
-+-++...|+++.|++.|.+++..-|.... +|+.-++++.-+|+.++|++=+++.++..-.....
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raS--------------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERAS--------------AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchH--------------hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHH
Confidence 345667889999999999999988776655 89999999999999999999999998753222222
Q ss_pred --hHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 149 --LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 149 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++-.-...|...|+.+.|..-|+...+.|.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 344455667788999999998888877664
No 241
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.65 E-value=0.0086 Score=43.02 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
.++..++.++...|++++|+..|++++.......+ ..+....++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678899999999999999999999874110000 0011122889999999999999999999998864
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.64 E-value=0.66 Score=44.27 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=80.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhH
Q 047659 450 IPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITH-TVLIRGIASQGSLSSAILLFFQMLKRGLTPD--VITY 526 (619)
Q Consensus 450 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~ 526 (619)
.+++.++++++..++ .|+..-|..+|+.-... -||...| +..+..+...++-+.|..+|+....+ +..+ ...|
T Consensus 430 ~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy 505 (660)
T COG5107 430 GHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIY 505 (660)
T ss_pred CcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHH
Confidence 457778888888776 57888889999854433 3454443 45666777889999999999966653 2223 5678
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047659 527 SAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (619)
..+|+--..-|+...+..+-++|.+. .|...+......-|.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 99999888999998888888888773 455555555444443
No 243
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=0.73 Score=43.45 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+.+..+.-+...|+...|.++-++.+ .|+..-|...+.+++..++|++..++-.. +-++..|..++..|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345556667777888888887766663 36888888888888888888877765432 12456788888888
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
.+.|...+|..+...+. +..-+..|.+.|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88888888888776621 245567778888888887765443
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.51 E-value=0.0064 Score=37.69 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
++..++..|.+.|++++|+++|+++++..|. |+..|..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhhh
Confidence 6778889999999999999999999988765 7777776653
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.46 E-value=0.54 Score=44.79 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=56.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc----c---chHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF----C---VYEFLMNGLLR---KGVIENAFHMHRQVIQRGFVPNIVT 215 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~---~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (619)
++.+...++-+|....+++..+++++.+..... + +-...+-++-+ .|+.++|++++..+......++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 445566677778888999999999998877632 1 13344445556 8899999999888666655788888
Q ss_pred HHHHHHHHH
Q 047659 216 CNKILKRLC 224 (619)
Q Consensus 216 ~~~ll~~~~ 224 (619)
+..+...|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 887777664
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.43 E-value=0.087 Score=41.62 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=60.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047659 487 DVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 487 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 566 (619)
|..++..++.++++.|+++....+++..- |+.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34567777778888888877777776543 32222110 0000 1112335567777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCc
Q 047659 567 MLIKECNLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
+|+..|++..|.++++...+ .+++.+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 77777777777777777664 5666667777777665554433
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.38 E-value=0.28 Score=46.61 Aligned_cols=100 Identities=11% Similarity=0.050 Sum_probs=71.2
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCC------CCccHHHHHHHHHc---cCChhHHHHHHHHHHH-hcCCc
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCV------SSPNIAQLIHVLLQ---SDMRDVASHVFDKMVI-QFGKT 97 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-~~~~~ 97 (619)
..++++.+-.++..|....+++.=+.+++.+...| .......++.++-+ .|+.++|+..+..++. ..+..
T Consensus 137 ~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 137 ELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred hhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 35788899999999999999999999999988732 22333467777778 8999999999999554 44444
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHH---------cCChhhHHHHHHHHHhC
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVR---------IGKIDESVEIFAYMSDM 141 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 141 (619)
++ ++..+++.|-. ....+.|+..|.+.-+.
T Consensus 217 ~d--------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 217 PD--------------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hH--------------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 44 45555544432 12356777777777654
No 248
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.34 E-value=0.11 Score=42.37 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=32.7
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++...++.++.+++..+++-+.- |..++.-..-+.++.+.|+|.+|..+|+.+....|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 33334555666666666665554 55555555555566666666666666666554433
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=1.7 Score=45.08 Aligned_cols=46 Identities=7% Similarity=0.164 Sum_probs=25.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAAL 578 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 578 (619)
++..+....+++.++.+.+..-+. ++..|..++..+++.+..+.-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHH
Confidence 444455555666665555544332 5666666666666666444433
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.26 E-value=0.23 Score=49.88 Aligned_cols=145 Identities=10% Similarity=0.006 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH----cCCh
Q 047659 53 QFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR----IGKI 128 (619)
Q Consensus 53 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 128 (619)
..|.-+. +.-|+....+.....-.|+-+.+.+.+.+..+..+-... +..+.-. .|...+..++. ..+.
T Consensus 178 G~f~L~l-SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-la~L~LL------~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 178 GLFNLVL-SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-LAALVLL------WYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHH-HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-HHHHHHH------HHHHHHHHHcCCcccCCCH
Confidence 3344333 344566667777888999999999999998763222111 1111100 33333333332 4566
Q ss_pred hhHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHhhCCc------cc-hHHHHHHHHhcCCHHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLV-QRLMSCLVDSNSVGQYYKLCRAMRGKGF------CV-YEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~-~~~l~~~~~~~~~~~~A~~~ 200 (619)
+.|.++++.+.+.- |+...| ..-.+.+...|+.++|++.|+++..... .. +..++-++...+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 78888998888764 344443 4456777788899999999887664222 11 55555566666677777776
Q ss_pred HHHHHHC
Q 047659 201 HRQVIQR 207 (619)
Q Consensus 201 ~~~~~~~ 207 (619)
+..+.+.
T Consensus 328 f~~L~~~ 334 (468)
T PF10300_consen 328 FLRLLKE 334 (468)
T ss_pred HHHHHhc
Confidence 6666665
No 251
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.24 E-value=0.009 Score=42.92 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC----CCC-CC-HHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM----GIY-LS-PDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
++..++..|...|++++|++.|++.++. +.. |+ ..++..+..++...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7889999999999999999999998743 211 12 34677788888899999999988887653
No 252
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.24 E-value=0.33 Score=47.11 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc--c---chHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF--C---VYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
..+..++.+.|+.++|++.++++.+..| | +...++.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3344444455555555555555544433 1 14445555555555555555555443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.12 E-value=0.12 Score=51.13 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=99.5
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHH--HhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFK--WTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+++..+.-... .-+|+++++.+..+ .+...-+..-...+++-+-+.|.++.|.++-+.--.
T Consensus 261 ld~~~~~fk~a--v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------- 323 (443)
T PF04053_consen 261 LDLSELEFKTA--VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH--------------- 323 (443)
T ss_dssp --HHHHHHHHH--HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH---------------
T ss_pred ECHHHHHHHHH--HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH---------------
Confidence 44444433333 34888888777665 222212233355677777788888888877444322
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
--....+.|+++.|.++.+.. +++..|..|.....++|+++-|.+.|.+... +..++-.
T Consensus 324 ----------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lL 382 (443)
T PF04053_consen 324 ----------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLL 382 (443)
T ss_dssp ----------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHH
T ss_pred ----------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHH
Confidence 223456788988888765433 3778899999999999999999988888654 6677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
|...|+.+.-.++.+.....| -++....++...|+.++..+++.+.
T Consensus 383 y~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 383 YSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 888888888777777777665 1444445555567777776666544
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.11 E-value=0.12 Score=40.80 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=57.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIH 531 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 531 (619)
|..++.++|-++++.|+.+....+++..= |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34578899999999999999988887552 22211100 0000 0111234566666666666
Q ss_pred HHHccCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHH
Q 047659 532 GLFKGKNISVGLHMFKLMER-NGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 569 (619)
+|+..|++..|.++++...+ .+++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 66666666666666666554 455555666666665443
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.48 Score=43.80 Aligned_cols=229 Identities=10% Similarity=0.037 Sum_probs=136.7
Q ss_pred HHHHHccCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
...+..+.+.+.|+..-.+.+. .....++.-+..+...+|+++++...--..+.......+. ...-.
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds---~~~~e----- 84 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS---DFLLE----- 84 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----
Confidence 3445667778888777666554 2223344456677788888887766544433321111110 00000
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------c
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM-GIYL---SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------V 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~ 180 (619)
+|..+.+.+-+.-++.+++.+-..-... |..| .......+..++...+.++++++.|+.+.+... | +
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 6778888888888888888877665543 1111 123445577788888899999999998765332 2 2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-CChh-hH-----HHHHHHHHhcCCcchHHHHHHHHHh----CCCCCC
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR--GFV-PNIV-TC-----NKILKRLCINGQIGNASSLFDVLLL----VGPKPN 247 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~-~~-----~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~ 247 (619)
+..+...|.+..++++|.-+...+.+. .+. .|.. -| ..+.-++...|++.+|.+.-++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888999999999999988776665443 111 1221 12 2233445567777777777766543 222211
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 248 -VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 248 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334455667777777777776666543
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.09 E-value=1.2 Score=41.40 Aligned_cols=163 Identities=10% Similarity=0.072 Sum_probs=101.8
Q ss_pred HccCCchhHHHHHHHhhc---CCCCccHHH-------HHHHHHccC-ChhHHHHHHHHHHHhcCC-------chhHHHHH
Q 047659 43 IKTNNPTPAIQFFKWTHN---CVSSPNIAQ-------LIHVLLQSD-MRDVASHVFDKMVIQFGK-------TYNFFRLF 104 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~---~~~~~~~~~-------l~~~~~~~g-~~~~A~~~~~~~~~~~~~-------~~~~~~~~ 104 (619)
.++|+.+.|..++.++.. ..++..... .+..+...+ +++.|...++++.+.-.. .++. ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~-~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG-SEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcH-HHH
Confidence 468999999999999887 334444444 444456777 999999999999876221 1110 011
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhh---HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--c
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDE---SVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--C 179 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~ 179 (619)
+- .+...++.+|...+.++. |.++++.+....+. .+..+..-++++.+.++.+.+.+.+.+|+..-. +
T Consensus 83 r~------~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 83 RL------SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred HH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 11 167788889998887765 45555555443332 456666777777778899999999999887654 3
Q ss_pred c-hHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCh
Q 047659 180 V-YEFLMNGLL--RKGVIENAFHMHRQVIQRGFVPNI 213 (619)
Q Consensus 180 ~-~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~ 213 (619)
. +..++..+- .......|...+..++...+.|..
T Consensus 156 ~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3 555555442 123334455555555444334443
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=0.36 Score=48.52 Aligned_cols=162 Identities=10% Similarity=-0.001 Sum_probs=111.4
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHH---------HH-H---ccCChhHHHHHHHHHHHhcCCch
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIH---------VL-L---QSDMRDVASHVFDKMVIQFGKTY 98 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~---------~~-~---~~g~~~~A~~~~~~~~~~~~~~~ 98 (619)
|-.+..++.-.--.||-+.+++.+.......+...-....- .+ . .....+.|.++++.+..+.|+..
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH
Confidence 33556666666678999999999998876333333322111 11 1 35677889999999999887653
Q ss_pred hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY---LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
- ....-++.+...|++++|++.|++....... .....+..++..+.-..+|++|.+.|..+.+
T Consensus 268 l--------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 L--------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred H--------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 2 4445567788899999999999987642111 1233456677778899999999999999998
Q ss_pred CCc-cc---hHHHHHHHHhcCCH-------HHHHHHHHHHHHC
Q 047659 176 KGF-CV---YEFLMNGLLRKGVI-------ENAFHMHRQVIQR 207 (619)
Q Consensus 176 ~~~-~~---~~~l~~~~~~~~~~-------~~A~~~~~~~~~~ 207 (619)
.+. +. ....+.++...|+. ++|.+++.++...
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 766 22 33344555577777 7777777776543
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.39 Score=39.37 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH---hH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD---LV 150 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~ 150 (619)
+.+.|..++|...|...-+.+-..+..+ ..........+.|+-..|...|+++-...+.|-+. ..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvL------------A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVL------------ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHH------------HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4456666666666666665544433322 33344455566677777777777665543333222 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
..-.-.+...|.++......+.+...+. .....+.-+-.+.|++..|..+|..+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1222234556666655555554433222 1133344444455555555555555444
No 259
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.97 E-value=0.34 Score=39.58 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
-.+.++.+++..+++.+.-..|. .+..-..-...+...|++.+|+.+|+.+....+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 33444555555555555443322 222223333444455555555555555544444
No 260
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.84 E-value=0.65 Score=46.41 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 212 NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 212 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
+..+...+...+.+...+..|-++|.+|-. ..++++.....++|.+|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344444455555566777778888877742 23556667777888888877766554
No 261
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.79 E-value=0.012 Score=33.84 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=29.4
Q ss_pred HHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHH
Q 047659 87 FDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVE 133 (619)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 133 (619)
|+++++.+|++++ +|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n~~--------------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE--------------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH--------------HHHHHHHHHHHCcCHHhhcC
Confidence 6788888888887 99999999999999999863
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.77 E-value=0.082 Score=46.79 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=63.4
Q ss_pred CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH
Q 047659 485 KPDVITHTVLIRGIAS-----QGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA 559 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 559 (619)
..|..+|...+..+.. .+.++=....++.|.+-|+.-|..+|+.|++.+-+..- .| ..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QN 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HH
Confidence 3455666666655543 34555555666667777777777777777766554321 11 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCccc
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNSCL 610 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~ 610 (619)
++....-.|-+. -+=++.++++|...|+.||..+-..|++++.+.|=+.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 112222222222 1346788888888888888888888888888776443
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.72 E-value=0.21 Score=49.34 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=96.3
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (619)
-+...-.|+++++.+..+.-.-. +..+....+.+++.+.+.|.++.|+.+...- ..-.....+.|+++.|.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHH
Confidence 34455678888877777522111 2223556778888888889988888875443 22344556677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 199 HMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
++..+ ..+...|..|.+.....|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 65432 23666788888888888888888887776632 5566667777777777777777666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 279 LVPDLIIYSILIDGLFKAGRLKEGNELLLTA 309 (619)
Q Consensus 279 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 309 (619)
- ++....++...|+.+++.+++.+.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 455555666667777777666543
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.65 E-value=0.67 Score=42.91 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=85.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC--CC-
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG--IY- 144 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~- 144 (619)
+.-+.-+...++.++|+..+.+.+.+-.+....+ . ++..+..+..+.|.+++++..--..++.- ..
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf----------~-~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d 78 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRF----------R-VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED 78 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHH----------H-HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888888877643322211 1 56677788888888887665433222110 11
Q ss_pred --CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047659 145 --LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CV---YEFLMNGLLRKGVIENAFHMHRQVIQRGF----- 209 (619)
Q Consensus 145 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 209 (619)
.--.++..+.+++-+..++.+++.+-..-..... +. ...+..++...+.++++++.|+.+.+...
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc
Confidence 0123455566666666666666666655443221 11 33455555666666666666666554311
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHH
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLF 236 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~ 236 (619)
.....++..|...|....++++|.-..
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~ 185 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFP 185 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhh
Confidence 111234555555555555555554433
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=1 Score=37.04 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=79.8
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc-------hHHHHHHHHhcCC
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV-------YEFLMNGLLRKGV 193 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~ 193 (619)
+.+.|..++|+.-|..+.+.|...-+ -............|+...|+..|.++-...+.+ .....-.+..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678899999999999887665323 234556667788888889999998887766522 2222234456777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
++....-.+-+...+-+.....-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666665554344444555666666677777777777777764
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.54 Score=39.61 Aligned_cols=99 Identities=9% Similarity=0.018 Sum_probs=75.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
=+.-+..+|++++|..-|..++..-|..+.-.+++ .|..-+.++.+.+.++.|+.-....++.++. ...+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsI---------ly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kA 170 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSI---------LYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKA 170 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHH---------HHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHH
Confidence 35567789999999999999988766554422111 5666677888889999999999888887654 5556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...-+.+|-+...+++|++-|.++.+..|
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 66667788888888999998888888777
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=1 Score=36.72 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=7.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 047659 153 LMSCLVDSNSVGQYYKLCR 171 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~ 171 (619)
+++.+.+.+.++++.-++.
T Consensus 75 ~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHHHHcCcHHHHHHHHH
Confidence 3333333344444443333
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.24 Score=45.20 Aligned_cols=183 Identities=8% Similarity=-0.095 Sum_probs=119.2
Q ss_pred ccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
...+.+.|..+=+...+ ....+-...-+.++..+|++.+|-..++++++..|...- ++..-=
T Consensus 79 a~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll--------------a~kfsh 144 (491)
T KOG2610|consen 79 AASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL--------------AVKFSH 144 (491)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhh--------------hhhhhh
Confidence 34455554443332222 233344455566677889999999999999999887543 555556
Q ss_pred HHHHHcCChhhHHHHHHHHHhC-CCCCCHHhH--HHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHH--HHHHHhcCC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDM-GIYLSPDLV--QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFL--MNGLLRKGV 193 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~ 193 (619)
.++...|+...-...+++++.. ++...-..| ....-++...|-+++|.+.-++..+.++ |.|..- ...+--.|+
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 7788889999999999999875 322222222 2233455688999999999999999988 665544 444446788
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPN---IVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
+.++.++...-...--..+ ..-|=...-.+...+.++.|+++|+.-.
T Consensus 225 ~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 225 HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 9999888765443311111 1122233445566689999999998644
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.41 E-value=0.088 Score=47.66 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh-----CC
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD-----MG 142 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 142 (619)
..++..+...|+++.+...+++.+..+|.... .|..++.+|.+.|+...|+..|+.+.+ .|
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~--------------~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEP--------------AYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchH--------------HHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 44555556666666666666666666555444 566666666666666666666666543 34
Q ss_pred CCCCHHhHHHHHHH
Q 047659 143 IYLSPDLVQRLMSC 156 (619)
Q Consensus 143 ~~~~~~~~~~l~~~ 156 (619)
+.|.+.+......+
T Consensus 223 i~P~~~~~~~y~~~ 236 (280)
T COG3629 223 IDPAPELRALYEEI 236 (280)
T ss_pred CCccHHHHHHHHHH
Confidence 55555554444443
No 270
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.40 E-value=0.48 Score=37.97 Aligned_cols=102 Identities=8% Similarity=0.015 Sum_probs=70.0
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh--HHHHHHhhcCCCc
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN--FFRLFRDSLGDFG 112 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 112 (619)
.++...+..++++++..+++-+.- |..++.-.--+.++.+.|+|.+|..+|+...+..+..+- .+.++.-...+++
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 344445679999999999998776 888888888889999999999999999999987654331 1111111222222
Q ss_pred ccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 113 CDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 113 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
.|...+......|...+|+.+.+.+.
T Consensus 95 -~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 -EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 55555666666666666666665554
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.07 E-value=2.5 Score=41.41 Aligned_cols=149 Identities=14% Similarity=0.089 Sum_probs=77.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
++.--.+..++..-++.-.++++.+|+. ...++-+--......+|.+++++..+.| + ..+. ... ..+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAg-E---~~lg---~s~----~~~~ 242 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAG-E---ASLG---KSQ----FLQH 242 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHH-H---Hhhc---hhh----hhhc
Confidence 3444445556666666666666666643 3333333334556677777777776654 1 0000 000 0000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 232 ASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 232 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
.-...+....+...+-..+-..+..++.+.|+.++|.+.|++|.+.... -...+...|+.++...+.+.++..++.+..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0011111222212222333344555666778888888888887654222 133456677777778888888888877765
Q ss_pred Hc
Q 047659 311 DR 312 (619)
Q Consensus 311 ~~ 312 (619)
+.
T Consensus 323 Di 324 (539)
T PF04184_consen 323 DI 324 (539)
T ss_pred cc
Confidence 43
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=1.9 Score=39.58 Aligned_cols=152 Identities=14% Similarity=0.009 Sum_probs=112.9
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-Cccc----hHHHH--HHHHhcCC
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK-GFCV----YEFLM--NGLLRKGV 193 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~l~--~~~~~~~~ 193 (619)
..-..|++.+|...++.+++..|. |.-++.-.=.++...|+...-...++++... +++. |..=+ -++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678999999999999987554 8888888888999999999999999998776 6543 22222 23447899
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP----NVVTFSTLINAFCKEAKLEKAFQ 269 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~ 269 (619)
+++|.+..++..+.+ +.|.-...++..++-..|+..++.+...+-...--.. .-.-|+. .-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHH
Confidence 999999999999887 6777777888888989999999998876644321111 1122333 334556689999999
Q ss_pred HHHHHH
Q 047659 270 LYNLMM 275 (619)
Q Consensus 270 ~~~~m~ 275 (619)
+|+.=.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998643
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.91 E-value=1.4 Score=34.43 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...++..+......|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4445677788888999999999999988764 4678899999999999999999999999999998864
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.88 E-value=0.043 Score=31.50 Aligned_cols=32 Identities=16% Similarity=-0.038 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
..+..++.++...|++++|++.|++++..+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999998775
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.84 E-value=2.2 Score=41.15 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=91.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH-------H-
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF-------R- 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~- 105 (619)
............+|++.-..+++.. |-..++...++.++.++|+.+.|.+++++++=....... ..+ .
T Consensus 12 ~~q~~F~~~v~~~Dp~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~--~~F~~~~~~~~~ 87 (360)
T PF04910_consen 12 EAQEQFYAAVQSHDPNALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH--PSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--HHhhhhhccccc
Confidence 3344455555566666666665332 689999999999999999999999999999754331111 011 0
Q ss_pred --h----hcCCCcccH---HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHh
Q 047659 106 --D----SLGDFGCDY---SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMR 174 (619)
Q Consensus 106 --~----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~ 174 (619)
. ..+.+...| ..-+..+.+.|-+..|.++.+-+...++..||......|..|+ +.++++--+++++...
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0 011222233 3346678888888888888888888877777777777777774 6677776666666543
No 276
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.78 E-value=1.8 Score=35.17 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=42.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
...++..+...+.+.....+++.+...+ ..+....+.++..|++.+. .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3344455555555566666666665554 3455566666666655422 222222221 1123333445555556
Q ss_pred cCCHHHHHHHHHHH
Q 047659 261 EAKLEKAFQLYNLM 274 (619)
Q Consensus 261 ~~~~~~a~~~~~~m 274 (619)
.+.++++.-++..+
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666665554
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=6.5 Score=40.57 Aligned_cols=108 Identities=9% Similarity=0.006 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 047659 455 IFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF 534 (619)
Q Consensus 455 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 534 (619)
+.+--+..+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+... .+.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445556677899999998887776 5888999999999999999987666554433 2556888999999
Q ss_pred ccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (619)
+.|+.++|.+++-+.... . -.+.+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 999999999988765432 1 4567888899998887654
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.57 E-value=0.053 Score=31.18 Aligned_cols=32 Identities=9% Similarity=-0.039 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.+|..++.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46888999999999999999999999998775
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.49 E-value=0.38 Score=42.80 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=61.4
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047659 246 PNVVTFSTLINAFCK-----EAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVV 320 (619)
Q Consensus 246 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 320 (619)
.|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+..- .| ...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP-~nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IP-QNV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------cc-HHH
Confidence 345555555554432 35566667777888888888888888888876543221 11 112
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRL 369 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 369 (619)
+..+.-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+..
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222222 22344666777777777777777777777777666543
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=1.5 Score=37.03 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhc
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRK 191 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~ 191 (619)
..++..+..+|++++|..-++..+.....-+ ..+-..+.++....|.+++|+..++.....+... ...-..++...
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 3445667778888888888887764321111 1223446667777888888888877776666533 44455667777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047659 192 GVIENAFHMHRQVIQRG 208 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~ 208 (619)
|+-++|+.-|+..+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777777664
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.39 E-value=9.6 Score=41.74 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 047659 249 VTFSTLINAFCKEA--KLEKAFQLYNLMME 276 (619)
Q Consensus 249 ~~~~~l~~~~~~~~--~~~~a~~~~~~m~~ 276 (619)
.....++.+|.+.+ .++.+++...+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34445666676666 55666666655554
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.35 E-value=1.5 Score=35.19 Aligned_cols=72 Identities=8% Similarity=-0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-chHHHHHHHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-VYEFLMNGLL 189 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~ 189 (619)
.++..-...++++++..+++.+.-..|. .+..-..-...+...|++++|+.+|+++.+..+. +|...+.++|
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3344455589999999999999876554 4444455566778899999999999999988874 4444444333
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.20 E-value=0.68 Score=42.11 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=52.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 047659 525 TYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD-----RGLEPDIITYNTI 599 (619)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 599 (619)
++..+++.+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+.+.+ .|+.|..++....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566667777777777777777777653 23666777777777777777777777776654 5777777766666
Q ss_pred HHH
Q 047659 600 ICG 602 (619)
Q Consensus 600 l~~ 602 (619)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
No 284
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.19 E-value=6.2 Score=38.72 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=62.1
Q ss_pred CCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH---ccCChHHHHHHHHHHHH-CCCCcCHH
Q 047659 485 KPDVITH-TVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLF---KGKNISVGLHMFKLMER-NGVAPDIA 559 (619)
Q Consensus 485 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~-~~~~~~~~ 559 (619)
.|+..++ +.+++-+...|-.++|...|..+.... +|+...|..++..-. .+| ...+.+.++.|.. .| -|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 3444443 455666667777777777777777642 445566666654322 223 6677777777766 34 5777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 560 IYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.|--.+..-...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777666677887777777666654
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.15 E-value=7.1 Score=39.28 Aligned_cols=395 Identities=13% Similarity=0.050 Sum_probs=211.8
Q ss_pred CCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH-
Q 047659 46 NNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY- 122 (619)
Q Consensus 46 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 122 (619)
.+.+.+...++..+. |.--.-|...+..-.+.|..+.+.++|++.+...|-..+ .|.....-+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Svd--------------lW~~Y~~f~~ 124 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVD--------------LWLSYLAFLK 124 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH--------------HHHHHHHHHh
Confidence 334455555565554 555566778888889999999999999999998775544 444443333
Q ss_pred HHcCChhhHHHHHHHHHhC-CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhc------
Q 047659 123 VRIGKIDESVEIFAYMSDM-GIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRK------ 191 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~------ 191 (619)
...|+.+...+.|+++... |.. .+...|...+..-..++++.....+|+++++... +.+..--.-++..
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhh
Confidence 3568888899999988764 211 2456788888888899999999999999887644 2222222222222
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCChhhHHHHHHHHH-hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 047659 192 GVIENAFHMHRQVIQR---G-FVPNIVTCNKILKRLC-INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~---~-~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
...+.+.++-...... . .......+..-+.-.. ..+..+.+..+..+.. ...-..+-..-....
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEE 273 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHH
Confidence 2233333322222211 0 0001111111111000 0011111111111110 000111222222333
Q ss_pred HHHHHHHHHhC---CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 047659 267 AFQLYNLMMEM---DL----VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQ 339 (619)
Q Consensus 267 a~~~~~~m~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 339 (619)
..-.|+.-... .+ .++..+|...+.--...|+.+.+.-+++...-.- ..=...|--.+......|+.+-+..
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~ 352 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANN 352 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHH
Confidence 33334433332 12 2345678888888889999999888888776321 1122334444444445588888887
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHH---HHHHH
Q 047659 340 TYDRMLNGGFLPNVISYSILIKGL-CQQGRLVEACGLFGQVLIRRLEPSLLT-YSSLIDGFCKSGKLRDGFS---LYDNM 414 (619)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~---~~~~~ 414 (619)
++....+--++..+. ...+-..+ -..|++..|..+++.+...- |+..- -..-+....+.|..+.+.. ++...
T Consensus 353 ~~~~~~~i~~k~~~~-i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 353 VLARACKIHVKKTPI-IHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HHHhhhhhcCCCCcH-HHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 776665543322222 22222222 23679999999999988763 55432 2223444556777777663 33222
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHHhhCCCCCCHh
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDG-----CCRLKRATDTVKLFMLMGMYNIKPDVI 489 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~ 489 (619)
..... +....+.+.-- +.-.++.+.|..++..+.+. .+++..
T Consensus 430 ~~~~~--------------------------------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~ 476 (577)
T KOG1258|consen 430 YEGKE--------------------------------NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKV 476 (577)
T ss_pred ccccc--------------------------------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHH
Confidence 22111 11111111111 22357778888888887765 366677
Q ss_pred hHHHHHHHHHhcC
Q 047659 490 THTVLIRGIASQG 502 (619)
Q Consensus 490 ~~~~l~~~~~~~g 502 (619)
.|..+++.....+
T Consensus 477 ~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 477 LYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhCC
Confidence 7777776665544
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.13 E-value=0.06 Score=30.95 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 135 FAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
|++.++..|. ++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666776655 7888888888888888888875
No 287
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.13 E-value=4.1 Score=36.46 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHH-HH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM-GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMN-GL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~-~~ 188 (619)
.+......+...+++..+...+...... ........+......+...+.+..+.+.+.......++. ...... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 5566667777777777777777777642 123345556666666667777777777777776655421 222223 56
Q ss_pred HhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEK 266 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 266 (619)
...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 666666666666666644211 011222222223334445555555555555443111123334444444444444455
Q ss_pred HHHHHHHHHh
Q 047659 267 AFQLYNLMME 276 (619)
Q Consensus 267 a~~~~~~m~~ 276 (619)
+...+.....
T Consensus 221 a~~~~~~~~~ 230 (291)
T COG0457 221 ALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHh
Confidence 5544444444
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.08 E-value=0.063 Score=30.48 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.3
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
++..++.++.+.|++++|...|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4567888999999999999999999998876
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.75 E-value=0.13 Score=30.01 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=22.7
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
++..++.++.+.|++++|++.|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
No 290
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.65 E-value=3.6 Score=34.24 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+.++.+.+.+++|+...+..+++.+.+.|++.. +..+...++-+|.......+-.+.. ....+.++--.|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 455666667778888888888888888877554 3344455555555544444322222 223333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 349 FLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
=...+..+++.+...|++-+|..+.+..... +......++++-.+.++...-..+++-..+.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0112455666777788888888777665322 2222345666666677766555555555443
No 291
>PRK09687 putative lyase; Provisional
Probab=93.62 E-value=6 Score=36.68 Aligned_cols=133 Identities=15% Similarity=0.043 Sum_probs=65.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 180 VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING-QIGNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 180 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
+....+.++...++ ..+...+-.+.+. ++..+....+.++...+ ....+...+..+.. .++...-...+.++
T Consensus 144 VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 144 VRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 34444555555554 3444444444432 33344444444444432 13345555555542 34555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+.|+. .+...+-...+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.++
T Consensus 217 g~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 217 ALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666663 3444444444332 2 233455666666664 466666666653 23555544444444
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=11 Score=39.19 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 148 (619)
.-++.+++.+.+++|..+-+.....-+.. .........+..+.-.|++++|-...-.|.. -+..
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~------------~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~ 424 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERF------------VIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAA 424 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCcccc------------chHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHH
Confidence 45678888889999988766554432210 1222677888888999999999999988853 3677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhh-CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRG-KGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCING 227 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 227 (619)
.|..-+..+...++......++-.-.. .+|.+|..++..+.. . .- .-|.+.++.- +++...-..++++- .-
T Consensus 425 eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~---~~-~~F~e~i~~W-p~~Lys~l~iisa~--~~ 496 (846)
T KOG2066|consen 425 EWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-S---DV-KGFLELIKEW-PGHLYSVLTIISAT--EP 496 (846)
T ss_pred HHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-H---HH-HHHHHHHHhC-ChhhhhhhHHHhhc--ch
Confidence 788888888777775544333221111 122336666666665 1 11 2233333321 22222222222111 00
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 228 QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 228 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...+. .. +...-..|+..|...++++.|++++-..+
T Consensus 497 ----------q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 497 ----------QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----------HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11110 11 11222337778888888888888876665
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=4.6 Score=34.23 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=82.6
Q ss_pred HccCCchhHHHHHHHhhcCCCCccH-----HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 43 IKTNNPTPAIQFFKWTHNCVSSPNI-----AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
...+.+ +.....+.+...+....| ..++..+.-.|++++|...++..+.... ..+. ..+ +-..
T Consensus 64 ~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~l-k~l---------~~lR 131 (207)
T COG2976 64 VQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENL-KAL---------AALR 131 (207)
T ss_pred HhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHH-HHH---------HHHH
Confidence 335555 444444545542223333 2456777899999999999998886422 2111 000 4557
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|.+.....|.+++|+..++.....+. .+........++...|+-++|+..|...+..++
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 78889999999999999988854322 223345667889999999999999999988765
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.24 E-value=3.3 Score=32.49 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGL 314 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 314 (619)
....+..+...|+-+.-.+++..+.+ +-++++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555543 1234555555555555555555555555555555543
No 295
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=25 Score=42.04 Aligned_cols=63 Identities=14% Similarity=-0.023 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 317 DVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 317 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
-..+|-...+....+|.++.|...+-...+.+ -+..+-.....+-..|+...|+.+++.....
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 35577788888888999998887776666553 3334455566777889999999998888754
No 296
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.06 E-value=7.7 Score=36.25 Aligned_cols=131 Identities=12% Similarity=0.169 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCC-
Q 047659 264 LEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK--AG----RLKEGNELLLTALDRGL---KLDVVVFSSVMDAYVGIGD- 333 (619)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~- 333 (619)
+++...+++.|.+.|+.-+..+|-+..-.... .. ....+..+++.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666665553333322 11 24567778888876542 2344445555433 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047659 334 ---VGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGR--LVEACGLFGQVLIRRLEPSLLTYSSLID 396 (619)
Q Consensus 334 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 396 (619)
.+.+..+|+.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356667777777766655433 33333333322222 3467778888888888777777665543
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.82 E-value=0.21 Score=29.18 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
+..|+..|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567777777777777777777754
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.29 E-value=9.8 Score=35.56 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHH
Q 047659 505 SSAILLFFQMLKRGLTPDVITYSAII 530 (619)
Q Consensus 505 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 530 (619)
.++.++++.+.+.|+++....|..+.
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35555555666555555554444433
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.24 E-value=0.41 Score=43.78 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 193 (619)
.-+.-|.++|.+++|+++|.+.....+. |+..+..-+.+|.+..++..|..-+..++..+- -.|..-+.+--..|.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3456789999999999999998876443 888899999999999999988888877766553 225555555555666
Q ss_pred HHHHHHHHHHHHHC
Q 047659 194 IENAFHMHRQVIQR 207 (619)
Q Consensus 194 ~~~A~~~~~~~~~~ 207 (619)
..+|.+-++.++..
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 77777766666665
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.20 E-value=2.6 Score=31.26 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 541 VGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 541 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
+..+-++.+....+.|++.+..+.+++|.+..++..|.++++..+.+ ..+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 44455555555667777777777777777777777777777777642 12222256655554
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.14 E-value=1.1 Score=37.81 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=73.5
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CCCCcc------HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CVSSPN------IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
+..=...+.++|++++|..-|..++. ++.... |...+.++.+.+.++.|+.--.+++..+|....
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-------- 169 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-------- 169 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--------
Confidence 33445567889999999999999988 333332 234556778999999999999999998875444
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+...-+.+|-+..++++|++=|..+.+..|.
T Consensus 170 ------Al~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 170 ------ALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred ------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 3334466888999999999999999987654
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.11 E-value=2.8 Score=35.70 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC---CCCcCH----HH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN---GVAPDI----AI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~ 560 (619)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.+...+++..+...+.++... |-.++. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666777777777777777777776543333 234566777777777777777776666542 111111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-CC-------CCCCHHHHHHHHHHHhhcCc
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTD-RG-------LEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~g-------~~p~~~~~~~ll~~~~~~~~ 608 (619)
|..+ .+...|++..|-+.|-.... .+ +.|+.......+.++.....
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R 171 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDR 171 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCH
Confidence 2222 23456788887777665542 21 23344444445555544443
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.07 E-value=1.1 Score=41.14 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=43.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
-++-|.++|.+++|+.-|.+.+..+|-++. .+..-+.+|.+..++..|..=.+.++..+- .-..+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV--------------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KA 167 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPV--------------YHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKA 167 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCcc--------------chhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHH
Confidence 344445555555555555555554443322 444444455555555555444444433211 12234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|..-+.+--..|...+|.+-++.+++..|
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence 44444444444555555555555555444
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.84 E-value=0.33 Score=27.72 Aligned_cols=31 Identities=16% Similarity=-0.011 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
++|..++.++...|++++|...|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999998766
No 305
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=3.3 Score=36.37 Aligned_cols=106 Identities=8% Similarity=-0.134 Sum_probs=74.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHh--------cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQ--------FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
..-++-+.+.|++.+|..-|+.++.. .|..+++...=... -..+.+..++++..|++-++++...+++
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~----tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMI----TPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhh----hHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556677899999999999988653 23333322111000 0156666777778888888888888888
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...+. |..++..-+.+.+..-+.++|..-|..+++..|
T Consensus 258 ~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 77544 778888888888877788888888888877776
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.51 E-value=0.34 Score=27.70 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|...|++++|+..|+++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 678888899999999999999999887543
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.47 E-value=0.85 Score=37.98 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=46.7
Q ss_pred hHHHHHHHhhc--CCCCccHHHHHHHHHc---cC-------ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 50 PAIQFFKWTHN--CVSSPNIAQLIHVLLQ---SD-------MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 50 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~---~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
.|.+-++.... |.+.+.++.-+.++.. .. -+++|+.-|++++..+|+..+ ++..
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd--------------Alw~ 74 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD--------------ALWC 74 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH--------------HHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH--------------HHHH
Confidence 34444444222 6666666554444432 22 345666666677777777666 6777
Q ss_pred HHHHHHHcCC-----------hhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 118 LIENYVRIGK-----------IDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 118 l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++.+|...+. ++.|.+.|+.... ..|+...|..-+...
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 7777766542 3444455555544 345555555554443
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=4 Score=40.85 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
..-.|+++.|..++-.+. -...+.++..+-++|-.++|+++... . ..-.....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~D-------~-d~rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELSTD-------P-DQRFELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCCC-------h-hhhhhhhhhcCcHHHHHHHH
Confidence 344566666666554442 23344566666666666666554211 1 11122334456666665554
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP 281 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (619)
.+. .+..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+....+-...++.|..
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~- 724 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN- 724 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-
Confidence 433 2444566666666666666666666655532 445555555566655555554444444322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 282 DLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 282 ~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
|...-++...|+++++.+++..
T Consensus 725 -----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----chHHHHHHHcCCHHHHHHHHHh
Confidence 2233345556666666655543
No 309
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.27 E-value=2.3 Score=36.24 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD--LIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
..+..+...|.+.|+.+.|.+.|..+.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666777777777777777777766543333 23455666666667777766666665543
No 310
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=3.3 Score=36.22 Aligned_cols=109 Identities=9% Similarity=0.007 Sum_probs=72.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..--..+.....++.|+.-|..++. |..+.-|..-+..+++..+|+.+..--.++++.+|+...
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk------------ 79 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK------------ 79 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH------------
Confidence 333333444556677788887777665 555566677788888888888888888888877666544
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHh----CCCCCCHHhHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSD----MGIYLSPDLVQRLMSC 156 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 156 (619)
...-+.+.......+++|+.++++... ..+.+....+..|..+
T Consensus 80 --~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 80 --AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 566777788888888888888887732 2233344455555444
No 311
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.98 E-value=24 Score=37.37 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
..++...++..... ..+.....--+......++++.+...+..|....- -...-.-=+.+++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555544321 11333333344444467777777777777654321 1222333345555566777777777777
Q ss_pred HH
Q 047659 309 AL 310 (619)
Q Consensus 309 ~~ 310 (619)
+.
T Consensus 372 ~a 373 (644)
T PRK11619 372 LM 373 (644)
T ss_pred Hh
Confidence 63
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.78 E-value=24 Score=37.17 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC-------hhHHHHHHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM-------RDVASHVFDKMVIQ 93 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~ 93 (619)
+..-++.++-.+++.|++++|.++.+.... ......+...+..+....+ -++-...|++.+..
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 555788999999999999999999955554 5566777777777765422 22444455555543
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.77 E-value=0.54 Score=26.72 Aligned_cols=26 Identities=4% Similarity=-0.155 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
|..+..++...|++++|++.|++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.73 E-value=8.8 Score=32.03 Aligned_cols=132 Identities=11% Similarity=0.126 Sum_probs=63.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 236 FDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+..+...++.|+...+..++..+.+.|.+....+ +...++-+|.......+-.+.. ....+.++--+|..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH---
Confidence 3344455566666666666666666665443333 3333444454444433322222 222233333333322
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 316 LDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLI 381 (619)
Q Consensus 316 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (619)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-...
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0112445556666777777777766654322 112224455555556665555555544444
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=11 Score=33.06 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=14.9
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCC
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPK 245 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~ 245 (619)
.-+..+++.+|.++|+++......
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777777777776655443
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.32 E-value=33 Score=37.95 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLII----YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMD 326 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 326 (619)
|.-.+..--+.|.+.+|+.++ .|+... |.+....+.....+++|--+|+..-+. .--+.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~ 973 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALK 973 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHH
Confidence 333334444455555555443 344444 444455555677777777777654322 23467
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 047659 327 AYVGIGDVGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 327 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 404 (619)
+|..+|+|.+|+.+..++... .+.. +-..|...+...+++-+|-++..+.... ..-.+..+++...+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 788889999988888877642 1222 2356777788888888888888777643 22334455666677
Q ss_pred HHHHHHHHHHH
Q 047659 405 RDGFSLYDNMI 415 (619)
Q Consensus 405 ~~a~~~~~~~~ 415 (619)
++|..+.....
T Consensus 1043 ~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1043 EEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcc
Confidence 77776665443
No 317
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=17 Score=36.51 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=99.3
Q ss_pred cCCchhHHHHHHHhhc--------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHH---HHHHhh
Q 047659 45 TNNPTPAIQFFKWTHN--------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFF---RLFRDS 107 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ 107 (619)
...+++|..-|.-+.. |...++...++.++-.+|+.+-|..+.++.+=....-+... -+..+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3344566666654433 56667778899999999999988888887754311100000 000011
Q ss_pred ----cCCCcccHHHH---HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-hcCChhHHHHHHHHHhhCCc-
Q 047659 108 ----LGDFGCDYSFL---IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-DSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 108 ----~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~- 178 (619)
.|.+...|.+| ++.+.+.|-+.-|.++..-+++.++.-||.....++..|+ +..+|.=.+++++.....+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 12223244443 5667788999999999999998877778888888888884 67777777777777644433
Q ss_pred ----cc-hHHH-HHHHHhcCC---HHHHHHHHHHHHHC
Q 047659 179 ----CV-YEFL-MNGLLRKGV---IENAFHMHRQVIQR 207 (619)
Q Consensus 179 ----~~-~~~l-~~~~~~~~~---~~~A~~~~~~~~~~ 207 (619)
+. |... +..|.+... ...|+..+.++++.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 33 4433 333443333 34455555555544
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.12 E-value=18 Score=34.53 Aligned_cols=104 Identities=8% Similarity=0.001 Sum_probs=67.4
Q ss_pred HHhhc-CCCCccHHHHHHHHHcc------------CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 56 KWTHN-CVSSPNIAQLIHVLLQS------------DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 56 ~~~~~-~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
+.+.. |.+..+|..++..--.. .-.+.-..+|+++++.+|.+.. ++...+..+
T Consensus 10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~--------------L~l~~l~~~ 75 (321)
T PF08424_consen 10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSER--------------LLLGYLEEG 75 (321)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Confidence 34444 77778887776543222 1234556678888887776554 667777788
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCChhHHHHHHHHHh
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD---SNSVGQYYKLCRAMR 174 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 174 (619)
.+..+.+...+.+++++...+. ++..|...+..... .-.++....+|.+.+
T Consensus 76 ~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888888888888876544 67777777766543 224556666555543
No 319
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.92 E-value=27 Score=36.34 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH-----HHHcCChhhHHHHHHHHHh-------CCCCCCH
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN-----YVRIGKIDESVEIFAYMSD-------MGIYLSP 147 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~ 147 (619)
...|...++.+....... ....++.+ +....|++.|+.+|+.+.+ .+ .+
T Consensus 228 ~~~a~~~~~~~a~~g~~~----------------a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~ 288 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSE----------------AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LP 288 (552)
T ss_pred hhHHHHHHHHHHhhcchH----------------HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 567888888777653322 12222222 4456799999999999976 43 44
Q ss_pred HhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCc-cchHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 148 DLVQRLMSCLVDSN-----SVGQYYKLCRAMRGKGF-CVYEFLMNGLLRK---GVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 148 ~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
.....+..+|.+.. +...|..++....+.+. +....+..++..- .+...|.++|..+.+.| .+....+..
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la 367 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLA 367 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHH
Confidence 46777888887653 55678888888888776 5555555555432 46778888898888887 222222222
Q ss_pred HHHHHH--hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 219 ILKRLC--INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 219 ll~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
++-... ...+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|..
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 222211 2345677888888877766 2232222233333333 6667777666666665544
No 320
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.91 E-value=20 Score=34.77 Aligned_cols=149 Identities=11% Similarity=-0.024 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047659 79 MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158 (619)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (619)
.+.++...|..++... +++.+..+....|.-..++..+...+.++|+.+.|.+++++++-. =..++......+.
T Consensus 9 ~Y~~~q~~F~~~v~~~--Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH--DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFR 82 (360)
T ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhh
Confidence 3444555555554432 222222222333332227777788888888888888888887531 0111111111100
Q ss_pred ---hcCCh------hHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCC
Q 047659 159 ---DSNSV------GQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC-INGQ 228 (619)
Q Consensus 159 ---~~~~~------~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~ 228 (619)
..|.. .+=+.+|.. ...-+..+.+.|.+..|+++.+-+...+..-|+......|+.|+ +.++
T Consensus 83 ~~~~~g~~rL~~~~~eNR~ffla--------l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLA--------LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred cccccCccccCCccccchHHHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 01100 000000000 22334566678888888888888888764446666666666664 5567
Q ss_pred cchHHHHHHHHHh
Q 047659 229 IGNASSLFDVLLL 241 (619)
Q Consensus 229 ~~~A~~~~~~~~~ 241 (619)
++-.+++.+....
T Consensus 155 y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 155 YQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhHhh
Confidence 7666676666543
No 321
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.89 E-value=4 Score=30.03 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCC
Q 047659 84 SHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNS 162 (619)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 162 (619)
...++..+..+|++.+ ....++..+...|++++|++.+-.+.+.+... +...-..++.++.-.|.
T Consensus 8 ~~al~~~~a~~P~D~~--------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLD--------------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HH--------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4456666777777666 67788888888888888888888887765433 34445555555554444
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.77 E-value=31 Score=36.85 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRG----FVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
..|+++.|.++.+.....= ..+....+..+..+..-.|++++|..+.....
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 4566666666665555441 12233344444555555666666666655544
No 323
>PRK09687 putative lyase; Provisional
Probab=89.70 E-value=17 Score=33.75 Aligned_cols=231 Identities=10% Similarity=0.024 Sum_probs=110.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhh-CCccchHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRG-KGFCVYEFLMNGLLRKGVI----ENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
|.......+..+...|. .++...+..+.. .++.+....+.++...|+. .++...+..+... .++..+....+
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 55555555555555553 233333333322 2223344445555555542 3455555555333 34555555555
Q ss_pred HHHHhcCCc-----chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 221 KRLCINGQI-----GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFK 295 (619)
Q Consensus 221 ~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 295 (619)
.++...+.. ..+...+.... ..++...-...+.++.+.++ +.+...+-.+.+. +|..+-...+.++.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 555544321 12233333322 23344555556666666665 3445555454442 344444444555554
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 296 AG-RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACG 374 (619)
Q Consensus 296 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 374 (619)
.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++.+.|.. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 32 13344445544443 23555556666666666663 4444444444432 2 233556666666664 5666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 047659 375 LFGQVLIRRLEPSLLTYSSLIDGF 398 (619)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~ll~~~ 398 (619)
.+..+.+. .||..+-...+.+|
T Consensus 256 ~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhh--CCChhHHHHHHHHH
Confidence 66666654 33555544444444
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=2.8 Score=41.90 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
..+.|+++.|.++..+.. ++.-|..|.++....+++..|.+.|.+... |..++-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHH
Confidence 345567777766655441 455677777777777777777776666543 445555555566655555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
....+.| ..| ...-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 5554444 222 2223344556666665555443
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.50 E-value=5.3 Score=33.46 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH---Hc-------CChhhHHHHHHHHHhCCCCCCHHh
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV---RI-------GKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-------g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
++.|++.++.....+|...+. ++.-+.++. +. ..+++|+.-|++.+..+|. ...+
T Consensus 7 FE~ark~aea~y~~nP~Dadn--------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN--------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH--------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH--------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHH
Confidence 577888889988888887663 222222222 22 2345566666666665444 4466
Q ss_pred HHHHHHHHHhc
Q 047659 150 VQRLMSCLVDS 160 (619)
Q Consensus 150 ~~~l~~~~~~~ 160 (619)
+..+..+|...
T Consensus 72 lw~lGnA~ts~ 82 (186)
T PF06552_consen 72 LWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677666543
No 326
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.33 E-value=15 Score=32.60 Aligned_cols=165 Identities=22% Similarity=0.223 Sum_probs=65.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH-HH
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR-GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN-AF 258 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~ 258 (619)
.......+...+.+..+...+...... ........+......+...+.+..+.+.+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333344444444444444444444331 112333334444444444444555555555544322221 111111111 44
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 047659 259 CKEAKLEKAFQLYNLMMEMDL--VPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGR 336 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 336 (619)
...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 455555555555555533111 011222222222233444555555555444443211123334444444444444444
Q ss_pred HHHHHHHHHh
Q 047659 337 AVQTYDRMLN 346 (619)
Q Consensus 337 a~~~~~~~~~ 346 (619)
+...+.....
T Consensus 221 a~~~~~~~~~ 230 (291)
T COG0457 221 ALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.24 E-value=32 Score=36.29 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
.++-.|.+.|.+++|.++....... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445566888888888877444433 345555666667777654
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.18 E-value=7.2 Score=28.70 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 540 SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
=++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++++..+.+ ...+...|..++..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 345555666666667777777777777777777777777777766632 12234455555543
No 329
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=35 Score=36.43 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
..++-+.+...|++.|+++.|++..+.-+. --..++..-+..+.+.+++..|-+.|-+..+
T Consensus 357 vndE~R~vWk~yLd~g~y~kAL~~ar~~p~-~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 357 VNDEARDVWKTYLDKGEFDKALEIARTRPD-ALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred eccchHHHHHHHHhcchHHHHHHhccCCHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 345678899999999999999998775531 1123445667788889999999999988865
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.49 E-value=0.55 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.8
Q ss_pred ccHHHHHHHHHccCChhHHHHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFD 88 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~ 88 (619)
.+...++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667788888888888887765
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.28 E-value=0.67 Score=26.05 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
..++.++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.18 E-value=40 Score=36.08 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=107.4
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVV-------TFSTLIN-AFCKEAKLEKAFQLYNLMMEM----DLVPDLIIYSILI 290 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll 290 (619)
....+++++|..++.++...-..|+.. .|+.+-. .....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345688999999998877542333221 3443332 234578889999888887654 2233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHcCCCH--HHHHHHHHHHHhCC--C----CCCHHHHH
Q 047659 291 DGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSV-----MDAYVGIGDV--GRAVQTYDRMLNGG--F----LPNVISYS 357 (619)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~--~~a~~~~~~~~~~~--~----~~~~~~~~ 357 (619)
.+..-.|++++|..+..+..+..-..+...+... ...+...|+. ......|....... - .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7778889999999888877654322233333322 2334556632 23333333332210 0 11223444
Q ss_pred HHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047659 358 ILIKGLCQQGRLVEACGLFGQ----VLIRRLEPSLLTY--SSLIDGFCKSGKLRDGFSLYDNMIKRG 418 (619)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~ 418 (619)
.++.++.+ .+.+..-... .......|-...+ ..++......|+.++|...+.++....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44555544 3333322222 2222222222222 356778888999999999998887653
No 333
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.13 E-value=3.6 Score=40.99 Aligned_cols=131 Identities=9% Similarity=0.029 Sum_probs=88.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhh-cCCCCccHH--HHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTH-NCVSSPNIA--QLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~--~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
....++..+...--.++-+..|-... ..+..+.|. .++..|. ..|+...|.+-+..+....|...+.
T Consensus 573 ~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v--------- 643 (886)
T KOG4507|consen 573 ARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV--------- 643 (886)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc---------
Confidence 34445555544444443333332222 244444443 4444444 5688888988888887766654332
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..-.|++.+.+.|.+-+|-.++...+... ...+-++..+.+++....+.+.|++.|+.+.+..+
T Consensus 644 ----~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 644 ----PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ----cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 56678888888888888888888887764 44667788888888888889999999998888877
No 334
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.90 E-value=0.68 Score=42.63 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=51.4
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
....+..|.++.|++.|..++. |+....+...+.++++.+.+..|++-+..++..+++... .|-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~--------------~yk 186 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK--------------GYK 186 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc--------------ccc
Confidence 3444556666666666666655 444444455556666666666666666666665554332 333
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.-..+-.-.|++++|...|....+.+..+
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 33334444566666666666666555443
No 335
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.70 E-value=31 Score=34.26 Aligned_cols=176 Identities=10% Similarity=0.089 Sum_probs=100.6
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+..-...++.++..+-.++-..++-.+++.-..... .+..+++.|... ..+.-..+++++.+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~km---------------al~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKM---------------ALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHH---------------HHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 44444555666677777777777777777776433322 677788888777 56677778887777
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---------chHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---------VYEFLMNGLLRKGVIENAFHMHRQVIQR-GFV 210 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 210 (619)
.... +...-..++..|- .++...+...|.++..+-.+ +|..+.... -.+.+.-+.+...+... |..
T Consensus 127 ~dfn-Dvv~~ReLa~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~ 202 (711)
T COG1747 127 YDFN-DVVIGRELADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEG 202 (711)
T ss_pred hcch-hHHHHHHHHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccc
Confidence 6543 4444455555554 36777777777776543321 133332211 23444444444444333 333
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINA 257 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 257 (619)
.-...+..+-.-|....++.+|.+++..+.+.+-+ |...-..++..
T Consensus 203 ~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 203 RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 33344444556666677778888877777665332 44444444443
No 336
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.54 E-value=42 Score=35.55 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCC-c--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 526 YSAIIHGLFKGKNISVGLHMFKLMERNGVA-P--DIAIYN-----VLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
++.+...+. .|+..+..+..........+ | ....|. .+...+...|+.++|..+..+...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333344 67777766555443321111 2 334553 344457778999999988877654
No 337
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.26 E-value=20 Score=31.56 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=15.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (619)
..-+..+++.+|+++|++.....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566777788887777655333
No 338
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.13 E-value=1.6 Score=42.32 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+++...+..+++.++++.|..++..+++ |+...-+..-+.++.+.+++..|..-+.++++.+|....
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K----------- 73 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK----------- 73 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh-----------
Confidence 4455666667777778888888887777 445555555667777777888777777777777654333
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.|..-+.++.+.+.+.+|...|+.....
T Consensus 74 ---~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 74 ---AYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred ---eeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4555556666667777777777777663
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.11 E-value=4.6 Score=29.64 Aligned_cols=45 Identities=7% Similarity=0.148 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLME 550 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (619)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555666777777777777777777777777776655
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=6.6 Score=35.99 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=56.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN---IKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA 528 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (619)
+..+...++..-....+++.++..+-.++..- ..|+... .+.++.+. .-++++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 44444455555555566666666665554321 1111111 12222222 2355677777776666777777777777
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 047659 529 IIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
+|+.+.+.+++.+|..+.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777776666554
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.38 E-value=5.2 Score=36.20 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
.+......|..+|.+.+|.++.++.+..++- +...+..++..|+..|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455566788888888888888888877543 77778888888888888777777776654
No 342
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.25 E-value=25 Score=31.62 Aligned_cols=119 Identities=10% Similarity=-0.005 Sum_probs=58.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 121 (619)
....+.|+++...++. |.+-.+|.-...++. -..++.+-...+++++..+|++.... .+...+
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW------------HHRr~i-- 121 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW------------HHRRVI-- 121 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH------------HHHHHH--
Confidence 4455555555555554 333333322222221 12345555666666666666665422 111111
Q ss_pred HHHcCChh-hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 122 YVRIGKID-ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 122 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.-..|++. .=+++...|+..+-+ +-.+|..---++..-+.++.=+....++++.+.
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 12223444 455666666654333 556666655555555566666666666665554
No 343
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.99 E-value=26 Score=31.53 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=86.9
Q ss_pred HccCCchhHHHHHHHhhc-CCCCccH-----HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC--CCccc
Q 047659 43 IKTNNPTPAIQFFKWTHN-CVSSPNI-----AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG--DFGCD 114 (619)
Q Consensus 43 ~~~~~~~~A~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 114 (619)
++...+++|+.-|+.+.+ ++...-| ..++.+..+.|++++....|.+++.-.- +.+. .++..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk----------SAVTrNySEKs 107 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK----------SAVTRNYSEKS 107 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----------HHHhccccHHH
Confidence 456689999999999988 5555444 3677889999999999999988876311 1111 12224
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhC-CCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHhhC------------C
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDM-GIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAMRGK------------G 177 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~ 177 (619)
.+.++.......+.+--.++++.-++. .-..+.. +-..+...|...+.+.+...++.++... |
T Consensus 108 IN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG 187 (440)
T KOG1464|consen 108 INSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG 187 (440)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence 555555555455555555555443321 0001222 3345667777777777666666655421 1
Q ss_pred c---cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 178 F---CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 178 ~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
. .+|..-++.|....+-.+-..++++.+
T Consensus 188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 188 TQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 124444555555555555555555443
No 344
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.88 E-value=39 Score=33.54 Aligned_cols=68 Identities=16% Similarity=-0.078 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCcc
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~ 179 (619)
+...|...+..+.+.+.+.+.-.+|..|+..+|. ++..|..-+.-...-+ +.+.|..+|.+.++.+|+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 3337777777777777788888888888877554 6677765554444333 377788888888877773
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.80 E-value=1 Score=23.84 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHcCChhhHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
+...++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777788888888877765
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=14 Score=32.66 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=57.7
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 199 (619)
....+++.|+..|-+.+..+|. .+.-|..-+..+.+..+++.+..-..+.++..++. ...+..+......++.|+.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3446778888888888775433 33455667777778888888888777777777743 6667777777777777777
Q ss_pred HHHHH
Q 047659 200 MHRQV 204 (619)
Q Consensus 200 ~~~~~ 204 (619)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 77766
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.34 E-value=3.8 Score=30.44 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
..+-++.+....+.|++....+.+.+|.+.+++..|.++++-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444555555666666667777777777777777777666654
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=18 Score=33.36 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=69.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047659 208 GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG---PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLI 284 (619)
Q Consensus 208 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (619)
|.+....+-..++..-....+++.++..+-++.... ..|+ .+-.+.++.+.+ -+.++++.++..-.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444455555556665556677788887777766421 1111 122233444433 35668888888888888889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
++..+++.+.+.+++.+|..+.-.|..+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999888888887776553
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.02 E-value=52 Score=34.27 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH-----hcCChhHHHHHHHHHhh-------CCc-cchHHHHHHHHhcC--
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLV-----DSNSVGQYYKLCRAMRG-------KGF-CVYEFLMNGLLRKG-- 192 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~-------~~~-~~~~~l~~~~~~~~-- 192 (619)
...|..+++...+.| +......+..+|. ...+.+.|+.+|+.+.+ .+. .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 467888888887765 4455555554443 45678889999888876 442 23667777777643
Q ss_pred ---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHH
Q 047659 193 ---VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI-NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFC--KEAKLEK 266 (619)
Q Consensus 193 ---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 266 (619)
+.+.|..++....+.| .|+.......+..... ..+...|.+.|......|.. ....+..++-... ...+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 6677888888888887 4554433333322222 24567888888888877643 3322222222222 2346788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 267 AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
|..+++..-+.| .|...--...+..+.. +..+.+.-.+..+.+.|..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 888888888876 3332222223333333 6677777666666666543
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.96 E-value=6.3 Score=34.05 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--LVPDLIIYSILIDG 292 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~ 292 (619)
+..++.+.+.+++.+++.....-.+..+. |..+-..++..++-.|+|++|..-++..-... ..+...+|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777666655332 56666777777788888888877776665432 22334556666554
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.91 E-value=2.6 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
..|+.+|...|+.+.|.+++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357888889999999999998888643
No 352
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.65 E-value=40 Score=32.60 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=36.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
...+|..++....+.|+++.|...+.++...++ .+...-++.+-..|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666666666666666666666655431 2244455666666666666666666655
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.30 E-value=27 Score=30.41 Aligned_cols=62 Identities=5% Similarity=-0.105 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
...+..+.+.+.+.+|+...+.-.+..|. +......++..||-.|++++|..-++-+....|
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 34455667777888888877777766544 666677777888888888888777777666655
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.21 E-value=2.2 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=15.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDR 587 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~ 587 (619)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 355
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.90 E-value=1.4 Score=24.98 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
+|..++..|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778888888899999999998888764
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.55 E-value=5.2 Score=29.42 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=39.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKID 129 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 129 (619)
|.+..+...++..+...|++++|.+.+-.++..++...+ +.+...++..+.-.|.-+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~------------~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED------------DAARKRLLDIFELLGPGD 75 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC------------CHHHHHHHHHHHHH-TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc------------cHHHHHHHHHHHHcCCCC
Confidence 788899999999999999999999999999998765422 124455555555555433
No 357
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.35 E-value=37 Score=31.20 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=28.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCChHHHHH
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKR-GLTPDVITYSAIIHGLFKGKNISVGLH 544 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 544 (619)
.++..+...++..++..+++.+-.++|+..... +..-|...|..+|+.....|+..-..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 344444445555555555555555555544432 223344445555555555555443333
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.32 E-value=4.7 Score=40.26 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=74.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
+-.+...|+...|..++..+.-..|.........++..+.+.|-.-+|-.++...+.... ++ +..+.+++....+++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 333445688888888888887655554555566777777888877788888777666554 33 777778888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
.|++.|+++.+.. +.+...-+.|...-|
T Consensus 694 ~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 8888888888775 555566666554443
No 359
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.12 E-value=3.5 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 559 AIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888999999999998888764
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.91 E-value=1.8 Score=23.56 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
..+..++..+...|+++.|...+++.++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4567788888899999999999988887654
No 361
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.29 E-value=12 Score=29.10 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=20.5
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047659 546 FKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (619)
+..+...++.|++.+...-+++|.+.+|+..|.++|+-++
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555554
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.24 E-value=73 Score=33.79 Aligned_cols=181 Identities=13% Similarity=0.153 Sum_probs=104.5
Q ss_pred HHHHHHHhhc----CCCC--ccHHHHHHHHH-ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH
Q 047659 51 AIQFFKWTHN----CVSS--PNIAQLIHVLL-QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV 123 (619)
Q Consensus 51 A~~~~~~~~~----~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 123 (619)
|++.++.+.. +|.. .+...++.++. -..+++.|+..+++.+..... .+..+. +-. ....++..+.
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~-k~~------~~~ll~~i~~ 111 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDL-KFR------CQFLLARIYF 111 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHH-HHH------HHHHHHHHHH
Confidence 5677776663 2222 33356777777 678999999999999775432 111000 000 3445677777
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHH-----HHHHhcCChhHHHHHHHHHhhCCc---cc----hHHHHHHHH--
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLM-----SCLVDSNSVGQYYKLCRAMRGKGF---CV----YEFLMNGLL-- 189 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~l~~~~~-- 189 (619)
+.+... |...+++.++.--......|.... ..+...+++..|.+.++.+..... +. +..++.+..
T Consensus 112 ~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l 190 (608)
T PF10345_consen 112 KTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHL 190 (608)
T ss_pred hcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 776666 999999887642221122232222 222334788999999988665431 22 333333333
Q ss_pred hcCCHHHHHHHHHHHHHCCC---------CCChhhHHHHHHHHH--hcCCcchHHHHHHHHH
Q 047659 190 RKGVIENAFHMHRQVIQRGF---------VPNIVTCNKILKRLC--INGQIGNASSLFDVLL 240 (619)
Q Consensus 190 ~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~A~~~~~~~~ 240 (619)
+.+..+.+.+.++.+..... .|...+|..+++.++ ..|+++.+...+..+.
T Consensus 191 ~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 191 RRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777777776644321 334556777766654 4566666666655443
No 363
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.98 E-value=3.1 Score=40.52 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=63.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
-+..+...+.++.|..+|.++++.+|+... .|..-..++.+.+++..|+.=+..+++..|. ....
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~--------------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~ 74 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAI--------------YFANRALAHLKVESFGGALHDALKAIELDPT-YIKA 74 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCccee--------------eechhhhhheeechhhhHHHHHHhhhhcCch-hhhe
Confidence 345566778888888888888888776654 4455557788888888888888888776533 3344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
|..-+.++.+.+++.+|+..|+......|
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 44445555555666666666666666655
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.96 E-value=21 Score=31.53 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=65.1
Q ss_pred ccCcccccccCChhhHHHHHHHH---------HccCCchhHHHHHHHhhc-------CCC--CccHHHHHHHHHccCChh
Q 047659 20 CSESKTHISDLQFNQANAILANL---------IKTNNPTPAIQFFKWTHN-------CVS--SPNIAQLIHVLLQSDMRD 81 (619)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~A~~~~~~~~~-------~~~--~~~~~~l~~~~~~~g~~~ 81 (619)
.+.....+..+++.....+.... .....+++|++.|.-+.- ++. ...+..++-++.-.|+.+
T Consensus 56 yA~~~~~F~~l~~~~~~~i~~~i~~~~~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~ 135 (214)
T PF09986_consen 56 YAAFEEDFEKLSPEQKEKIKENISSRWKPRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEE 135 (214)
T ss_pred CcccccccccCCHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHH
Confidence 33444445555555444443332 223455677777776554 111 223345666666777755
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhhcCCC----cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 82 VASHVFDKMVIQFGKTYNFFRLFRDSLGDF----GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 82 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.....+++++........ ....|.. ..+...++....+.|+.++|.+.|.+++..+-.
T Consensus 136 ~E~~fl~~Al~~y~~a~~-----~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 136 NEKRFLRKALEFYEEAYE-----NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHHHHHH-----hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 555555555443221111 0011111 115667778888899999999999999876433
No 365
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.96 E-value=3.8 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=14.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLK 516 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 516 (619)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555556666666666666655543
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.56 E-value=4.9 Score=28.25 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=42.0
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
+...++.++|...++++++..+.+++.++ ++..|+++|...|++.+++.+--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~-----------~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFR-----------VLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999998887666432 67788999999999998887653
No 367
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.43 E-value=8.7 Score=37.58 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=76.7
Q ss_pred ccCCchhHHHHHHHhhc---CC--------CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC-
Q 047659 44 KTNNPTPAIQFFKWTHN---CV--------SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF- 111 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~---~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 111 (619)
-.|+++.|.+++-..-. +. ....|+.++-++.+.|.+..+..+|.+++++... ++...+.+.
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~------qL~~g~~~~~ 325 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS------QLRNGLKPAK 325 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH------HHhccCCCCc
Confidence 37888888888765332 22 3445677888899999999999999999873221 222221111
Q ss_pred ---------cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 047659 112 ---------GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD 159 (619)
Q Consensus 112 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (619)
-.+....+-.|...|++-.|.++|....+. ...+|..|..++.+|.-
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 114556677888899999999999998776 45588999999988863
No 368
>PRK12798 chemotaxis protein; Reviewed
Probab=80.90 E-value=58 Score=31.75 Aligned_cols=195 Identities=9% Similarity=-0.003 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+|.++...+...+..|++.-...+...-. .++.+.-..-+-...-.|+-.+|.+.+..+-...- |.
T Consensus 80 dprNv~Aa~iy~lSGGnP~vlr~L~~~d~-~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l-------------~~ 145 (421)
T PRK12798 80 DPRNVDAALIYLLSGGNPATLRKLLARDK-LGNFDQRLADGALAYLSGRGREARKLLAGVAPEYL-------------PA 145 (421)
T ss_pred CccchhHHHhhHhcCCCHHHHHHHHHcCC-CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhc-------------Cc
Confidence 56678888888888888877776666544 23333333333444467888888888777654321 11
Q ss_pred CcccHHHHHHHH-HHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc----
Q 047659 111 FGCDYSFLIENY-VRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV---- 180 (619)
Q Consensus 111 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---- 180 (619)
.-..|..|+.+- ....++..|+.+|+...-. -|.. .....-+......|+.+++..+-.....+.. ++
T Consensus 146 ~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~ 223 (421)
T PRK12798 146 ELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ 223 (421)
T ss_pred hhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH
Confidence 111555665543 3456888888888887653 2332 2344444555677777777666555554433 22
Q ss_pred -hHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 181 -YEFLMNGLLRKGVIENAFHMHRQVIQR-GFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 181 -~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+......+.+.++-..- +-+..++.. ....-...|..+...-.-.|+.+-|.-.-++....
T Consensus 224 F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 224 FAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 22222233332221111 112222222 11223445666666666677777766666665543
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.69 E-value=1.7 Score=40.10 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=74.2
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcCCHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 198 (619)
....|.++.|++.|...++.++ +....+..-.+++.+.+.+..|++-+....+.++|. |-.-..+..-.|++++|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 4557889999999999988743 366667778888889999999999999999999855 666666666789999999
Q ss_pred HHHHHHHHCCCCCChhhH
Q 047659 199 HMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ 216 (619)
..+....+.++.+....|
T Consensus 203 ~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 999998888765555444
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.36 E-value=16 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---GLKLDVVVFSSVMDAYVGIGDVGRA 337 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 337 (619)
+.|++.|-.+...+.--++.....|...| -..+.+++..++-...+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444333333333333322 344555555555555432 2244555566666666655555544
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.92 E-value=22 Score=30.58 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN---GVAPDIAIYNVLLNMLIKECNLDAA 577 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 577 (619)
.|...|-.+...+.--++.....+...|. ..+.++++.++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333332 34455555555554441 1244555555555555555555544
No 372
>PRK10941 hypothetical protein; Provisional
Probab=79.43 E-value=14 Score=33.89 Aligned_cols=59 Identities=15% Similarity=-0.034 Sum_probs=53.6
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
+.+.++++.|+...+.+.. |.++.-+...+.++.+.|.+..|..-++..++.-|+.++.
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4779999999999999888 8888889999999999999999999999999998877663
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.90 E-value=19 Score=26.02 Aligned_cols=67 Identities=9% Similarity=0.071 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHH
Q 047659 130 ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 198 (619)
.+.++++...+.++- +......+-.+--..|+.+.|.+++..+. ++|+.|...+.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 355666777666644 33333333333335677888888888888 77777777777777777665554
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.41 E-value=64 Score=30.80 Aligned_cols=50 Identities=10% Similarity=-0.086 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+.-+.+++++++.++ .+...+...+..+.+..+.+...+.+++++..+|
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 3455666777766654 3666666666766666666666666666666655
No 375
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.16 E-value=61 Score=29.88 Aligned_cols=139 Identities=8% Similarity=0.085 Sum_probs=92.6
Q ss_pred ChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHccCChHHHH
Q 047659 468 RATDTVKLFMLMGM-YNIKPDVITHTVLIRGIAS-QG-SLSSAILLFFQMLKR-GLTPDVITYSAIIHGLFKGKNISVGL 543 (619)
Q Consensus 468 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (619)
...+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... |-.++..+...+++.++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555553221 2234455666666665554 22 222233334444432 34678888899999999999999999
Q ss_pred HHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHhhc
Q 047659 544 HMFKLMERN-GVAPDIAIYNVLLNMLIKECNLDAALKLFGQ-----LTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 544 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
++++..... +..-|...|..+|+.-...||..-...+.++ +.+.|+..+...-..|-+.+.+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~v 291 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKV 291 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhc
Confidence 999888765 5666888999999999999999888887776 33566777777766665555443
No 376
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.12 E-value=77 Score=30.58 Aligned_cols=66 Identities=11% Similarity=-0.074 Sum_probs=46.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKP---DVITHTVLIRGIASQGSLSSAILLFFQMLKR 517 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 517 (619)
...+|..+...+.+.|+++.|...+..+...+... .+...-.-....-..|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567788888888999999988888877643211 2333444455666778888888888888773
No 377
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=76.08 E-value=70 Score=30.05 Aligned_cols=79 Identities=9% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHhhccccc--cccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHH
Q 047659 10 TVWRSINKC--YCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASH 85 (619)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 85 (619)
-.|..|... ....-++.++.+++ +....+.....++++.+.++.++.... +.=.+.......++.+.| ++.+..
T Consensus 76 a~W~~I~~lP~~~~~g~T~L~~p~a-d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~ 153 (301)
T TIGR03362 76 ALWGTITALPMSNADGRTRLAPPPA-DRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQ 153 (301)
T ss_pred HhhhhhccCCCCCCCCCccCCCCCH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHH
Confidence 467887743 22235667765555 444455555577888888888887774 222233345666777777 455544
Q ss_pred HHHHH
Q 047659 86 VFDKM 90 (619)
Q Consensus 86 ~~~~~ 90 (619)
....-
T Consensus 154 aI~~e 158 (301)
T TIGR03362 154 AIRDE 158 (301)
T ss_pred HHHHH
Confidence 44443
No 378
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.74 E-value=91 Score=31.23 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=87.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK 260 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 260 (619)
...++..+..+....-...+..+++..| -+...+..++..|..+ ..++-..+++++.+.... |...-..|...|-
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE- 143 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE- 143 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH-
Confidence 5566666666666666666666666654 3445566666666665 455566666666554332 3333333333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCH
Q 047659 261 EAKLEKAFQLYNLMMEMDLVP--D---LIIYSILIDGLFKAGRLKEGNELLLTALDR-GLKLDVVVFSSVMDAYVGIGDV 334 (619)
Q Consensus 261 ~~~~~~a~~~~~~m~~~~~~~--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~ 334 (619)
.++.+.+..+|..+...=++. + ...|..+.... ..+.+....+..++... |...-...+..+-.-|....++
T Consensus 144 kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 144 KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 366666666666655431110 1 12333333211 23445555555555432 2333334444455556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 335 GRAVQTYDRMLNGGFLPNVISYSILIK 361 (619)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~ll~ 361 (619)
++|++++..+.+.+ ..|...-..++.
T Consensus 222 ~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 222 TEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred HHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 66666666666543 224444444443
No 379
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=63 Score=29.20 Aligned_cols=148 Identities=8% Similarity=0.084 Sum_probs=95.8
Q ss_pred HHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIE 120 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (619)
..+-..++.++..+|+.+. .+....+.|.++.+.++..+|.+.... .|...+-
T Consensus 35 ~I~Yte~fr~~m~YfRAI~---------------~~~E~S~RAl~LT~d~i~lNpAnYTVW------------~yRr~iL 87 (318)
T KOG0530|consen 35 KIAYTEDFRDVMDYFRAII---------------AKNEKSPRALQLTEDAIRLNPANYTVW------------QYRRVIL 87 (318)
T ss_pred EeeechhHHHHHHHHHHHH---------------hccccCHHHHHHHHHHHHhCcccchHH------------HHHHHHH
Confidence 3444566667777776554 466777889999999999988877633 2222221
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHHhhCCc---cchHHHHHHHHhcCCHHH
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-QYYKLCRAMRGKGF---CVYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 196 (619)
-.. ..++.+=++.++++.+..++ |-..|..-=.+.-..|++. .=+++.+.|...+. -+|..---++..-+.++.
T Consensus 88 ~~l-~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~ 165 (318)
T KOG0530|consen 88 RHL-MSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYED 165 (318)
T ss_pred HHh-HHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHH
Confidence 111 23477778888888887766 7777776555555556666 66777888877555 224444444555566888
Q ss_pred HHHHHHHHHHCCCCCChhhHHH
Q 047659 197 AFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
-+....++++.+ .-|..+||.
T Consensus 166 EL~y~~~Lle~D-i~NNSAWN~ 186 (318)
T KOG0530|consen 166 ELAYADELLEED-IRNNSAWNQ 186 (318)
T ss_pred HHHHHHHHHHHh-hhccchhhe
Confidence 888888888876 334445654
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.22 E-value=90 Score=30.89 Aligned_cols=122 Identities=7% Similarity=0.000 Sum_probs=62.7
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHH
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ 151 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 151 (619)
.-....|+.-.|.+-+...+.+.|..++ ............|+++.+.+.+....+. +.....+..
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~--------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~ 361 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPV--------------LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLR 361 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCch--------------hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHH
Confidence 3344556666666666666666555444 2222233344456666666665555432 222444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 152 RLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 152 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.+++...+.|++++|...-+-|+.... +. ........-..|-++++.-.+.++...+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 566666666666666666666655444 11 2222222234455566666666555543
No 381
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.17 E-value=5.2 Score=21.49 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+..++..+...|+++.|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5677888888889999999988888764
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.06 E-value=73 Score=29.81 Aligned_cols=149 Identities=11% Similarity=0.018 Sum_probs=77.5
Q ss_pred ccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
..+++..|...+.......+..+...++..+.. ..+..+|...|+....... +. ....|.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~--~~--------------a~~~lg 116 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL--AE--------------ALFNLG 116 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc--HH--------------HHHhHH
Confidence 345556666666665543333455555555542 2356667777775544311 11 444555
Q ss_pred HHHHH----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-------ChhHHHHHHHHHhhCCc-cchHHHHHH
Q 047659 120 ENYVR----IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-------SVGQYYKLCRAMRGKGF-CVYEFLMNG 187 (619)
Q Consensus 120 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~-~~~~~l~~~ 187 (619)
..|.. ..+..+|...|+.+.+.|..+...+...+...|.... +...|...|.++...+. +....+...
T Consensus 117 ~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~ 196 (292)
T COG0790 117 LMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRM 196 (292)
T ss_pred HHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55554 3367777777777777654322223444555554321 11256666666555554 224444433
Q ss_pred HHh----cCCHHHHHHHHHHHHHCC
Q 047659 188 LLR----KGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 188 ~~~----~~~~~~A~~~~~~~~~~~ 208 (619)
|.. ..+..+|..+|...-+.|
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 332 335566666666666665
No 383
>PRK10941 hypothetical protein; Provisional
Probab=74.97 E-value=40 Score=31.02 Aligned_cols=64 Identities=3% Similarity=-0.141 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
....+-.+|.+.++++.|+.+.+.++...|. ++.-+.-.+-+|.+.|.+..|..-++..++.-|
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3445555566666666666666666655443 455555555556666666666665555555444
No 384
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.81 E-value=1.8 Score=35.40 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444555566666666666665554455666666667776666656665555411 11222344445555555
Q ss_pred HHHHHHHHHH
Q 047659 264 LEKAFQLYNL 273 (619)
Q Consensus 264 ~~~a~~~~~~ 273 (619)
++++.-++..
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 385
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=40 Score=30.00 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc---------CCCCccHH-----------HHHHHHHccCChhHHHHHHHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN---------CVSSPNIA-----------QLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~-----------~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
..+..-...+.+.|++.+|..-|+.+.. .|-.+-|. .+...++..|++-++++.-..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3555666778889999999888887654 44445554 344566788999999999999999
Q ss_pred hcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 93 QFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..|.+.. +|..-+.+.+..-+.++|..=|..+++.++.
T Consensus 259 ~~~~nvK--------------A~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVK--------------AYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHH--------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 8887766 7788888888899999999999999876443
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.93 E-value=50 Score=30.13 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 047659 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ---- 365 (619)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 365 (619)
|.+++..++|.++..+.-+.-+.--+..+.+...-|-.|.+.++...+.++-....+..-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4445555555555554444433222223334444444455666666555555555543222223334444444333
Q ss_pred -cCCHHHHHHHH
Q 047659 366 -QGRLVEACGLF 376 (619)
Q Consensus 366 -~~~~~~a~~~~ 376 (619)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666665555
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.70 E-value=1.5e+02 Score=32.61 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCC--CC-CCHHhHHHHHHHHHhcCCh--hHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMG--IY-LSPDLVQRLMSCLVDSNSV--GQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~ 178 (619)
-|..|+..|...|+.++|++++....+.. .. .-...+..+++-+.+.+.. +-+++.-.+....+|
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p 575 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP 575 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc
Confidence 56677777777777777777777765421 00 0112233344444444443 455555555555444
No 388
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.68 E-value=1.3e+02 Score=31.99 Aligned_cols=169 Identities=10% Similarity=0.049 Sum_probs=90.4
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENA 197 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 197 (619)
+..+.+.+.+++|+...+.....-+.. -...+...+..|...|++++|-...-.|.......|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 456677889999988777665432211 2345666777788888999888888887665433355555555555554332
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 198 FHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
. .-+.......+...|..++..+.. ... .-|.+... ..+...|..+...-+... +..+.
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~----~~~-~~F~e~i~---~Wp~~Lys~l~iisa~~~----------q~~q~ 501 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA----SDV-KGFLELIK---EWPGHLYSVLTIISATEP----------QIKQN 501 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH----HHH-HHHHHHHH---hCChhhhhhhHHHhhcch----------HHHhh
Confidence 2 222222212455567777766655 112 22222222 123333333322111111 11110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 278 DLVPDLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 278 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
-+ +...-..|+..|...+++..|..++-...
T Consensus 502 -Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 502 -SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11 22233347777888888888888876665
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.52 E-value=10 Score=28.20 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=39.9
Q ss_pred HHHccCCchhHHHHHHHhhc----CCC-------CccHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 41 NLIKTNNPTPAIQFFKWTHN----CVS-------SPNIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~----~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
...+.|++.+|++.+....+ ... ..+...++.+....|.+++|...+++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678999999777776665 222 233456778888999999999999999885
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=73.41 E-value=24 Score=36.94 Aligned_cols=132 Identities=10% Similarity=0.024 Sum_probs=62.3
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHH-HHHHHHHHHhcCCchhH-HHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVA-SHVFDKMVIQFGKTYNF-FRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 111 (619)
.+..++..+ -.|+...+++...... ++.+.-..++.++...|-++.. ..-+. ...-.+. +-.+...+...
T Consensus 300 ~~e~~~~~i-~~~d~~~vL~~~~~~~--~~~w~aahladLl~~~g~L~~~~~~~~~-----~~~lre~~ll~YA~~L~s~ 371 (566)
T PF07575_consen 300 PLEQILLAI-FEGDIESVLKEISSLF--DDWWFAAHLADLLEHKGLLEDSEQEDFG-----GSSLREYLLLEYASSLMSH 371 (566)
T ss_dssp TTHHHHHHH-HTS--GGGHHHHHHH----HHHHHHHHHHHHHHTTSS--SS----------TS-HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHH-HccCHHHHHHHHHHHc--cchhHHHHHHHHHHhcCccccccccccc-----cccHHHHHHHHHHHHHhcC
Confidence 344444443 3888888888887664 4556667788888777777610 00000 0000000 00011111112
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
...|-.-+..+..+++.. ....+..+.+-|-.+......++..|.+.|-.+.|.++++.+-.
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 224555555555444332 55566665554555666667777777777777777777666543
No 391
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.41 E-value=86 Score=29.85 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=64.1
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH----HhHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP----DLVQR 152 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 152 (619)
+-+++.+...+...+...... .++-...-.-.++..+..++.+.+.+...++...+++.. ..|.+ ...-.
T Consensus 72 ~~~~~~li~~~~~FV~~~n~e-----qlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~ 145 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGE-----QLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHAD 145 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChH-----HHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHH
Confidence 346666677777776653311 000000001115667777777777777766666555443 22222 23444
Q ss_pred HHHHHHhcCChhHHHHHHHH-H---hhCCc--cc------hHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 153 LMSCLVDSNSVGQYYKLCRA-M---RGKGF--CV------YEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~-~---~~~~~--~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
++..+.+.+++..+...++. + ...++ ++ +..-.-.|...++++.|+-++...+..
T Consensus 146 l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 146 LLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 66666677777655544432 1 11122 22 111222344667788888888777653
No 392
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.37 E-value=4.3 Score=33.09 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHH
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIE 195 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 195 (619)
.++..+.+.+.+.....+++.+...+...++...+.++..|++.++.+...++++... +. ...++..|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 4567777789999999999999877666678889999999999988788877776211 11 455566666666666
Q ss_pred HHHHHHHH
Q 047659 196 NAFHMHRQ 203 (619)
Q Consensus 196 ~A~~~~~~ 203 (619)
.|.-++..
T Consensus 88 ~a~~Ly~~ 95 (143)
T PF00637_consen 88 EAVYLYSK 95 (143)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 66665554
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.59 E-value=18 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 568 LIKECNLDAALKLFGQLTDRGLEPDIITYNTIIC 601 (619)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 601 (619)
..+.|-..++..++++|.+.|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445555566666666666666666666665554
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.38 E-value=85 Score=28.92 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.7
Q ss_pred cccCChhhHHHHHHHHHc
Q 047659 27 ISDLQFNQANAILANLIK 44 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (619)
+++++|+-+++.+....+
T Consensus 98 ~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 98 PKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 477899999999988765
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=84 Score=28.75 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 047659 255 INAFCKEAKLEKAFQLYNLMMEMDLVPDLI-------IYSILIDGLFKAGRLKEGNELLLTAL----DRGLKLDVVVFSS 323 (619)
Q Consensus 255 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 323 (619)
.+-..+.+++++|+..+.++...|+..|.. +...+...|...|++...-+...... +..-+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 334455666777777777776666555443 33445566666666655444433222 1111223444555
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 324 VMDAYVGI-GDVGRAVQTYDRMLNGGFLPNV-----ISYSILIKGLCQQGRLVEACGLFGQVL 380 (619)
Q Consensus 324 ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~ 380 (619)
++..+... ..++...++.....+....-.. ..-..++..+.+.|++.+|+.+...+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 55555433 3355555555554432111111 122456778889999999988766554
No 396
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=70.91 E-value=15 Score=35.93 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 79 MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
..-+|.-+++..+..+|.++. ....+++.|...|-.+.|...|+.+.
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~--------------~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQ--------------LKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 334566666666666666655 55666777777777777777776664
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.84 E-value=64 Score=27.36 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
++.|..+++.+-+..+.+.......... +-...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~l------ik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKL------IKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHH------HHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4578888888877766554433322222 344567789999999999999999976
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.62 E-value=18 Score=25.52 Aligned_cols=46 Identities=7% Similarity=0.097 Sum_probs=29.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMERNGVAPD--IAIYNVLLNMLIKECNLDAALKL 580 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 580 (619)
...+.++|+..|+...+.-..+. ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766422222 22566777777777877776654
No 399
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.04 E-value=17 Score=32.53 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=43.8
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
++|..-..++..+..+|+...|+.+++....+.....-..+....+.+|...+|...-+....
T Consensus 106 ~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 106 LIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred CCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCch
Confidence 345556678888888899999999999877533333333333444778888888888777665
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=68.88 E-value=35 Score=26.71 Aligned_cols=58 Identities=7% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
..+-+..+....+.|++......+++|.+.+|+..|.++|+-+... ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3444555556677888888888888888888888888888877653 222333454443
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.60 E-value=1e+02 Score=28.80 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIV---TCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
+.-+.-+.|+..+|.+.++++.+. .|=.. ....++.++....-+.+...++.+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444667777777777777665 22211 233566666666666666665555443
No 402
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.93 E-value=2.2e+02 Score=32.07 Aligned_cols=125 Identities=14% Similarity=-0.002 Sum_probs=72.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh-cC-----------CC----cccHHHHHHHHHHcCChhhHH
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS-LG-----------DF----GCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~----~~~~~~l~~~~~~~g~~~~A~ 132 (619)
.++..++..|...+|.+.|.++....+.. ++++.+... .| .. ...|...++.+-+.+-.+.+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566789999999999999998876654 344443322 11 01 114666777777777778777
Q ss_pred HHHHHHHhCCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCH
Q 047659 133 EIFAYMSDMGIYLS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVI 194 (619)
Q Consensus 133 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 194 (619)
++-..+++.-+..+ +.+++.+.......|.+-+|.+.+-+...... +....++..++..|.+
T Consensus 1004 QlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1004 QLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 77777765422212 22455566666666766666655433222111 2244445555555544
No 403
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.78 E-value=69 Score=26.09 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 047659 557 DIAIYNVLLNMLIKECN-LDAALKLFGQLTDRGLEPDIITYNTIICGYCSL 606 (619)
Q Consensus 557 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 606 (619)
+...|.+++.+.....- .--+..+|+-|.+.+.++++.-|..||.++.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33445555555544333 223445555555555555666666666555544
No 404
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.38 E-value=1.4e+02 Score=29.64 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcC
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVV--FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQG 367 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~ 367 (619)
..+..|+.+- ++.+.+.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3455677654 444445676655432 2334455556677653 34444555544432 1123455566777
Q ss_pred CHHHHHHHHH
Q 047659 368 RLVEACGLFG 377 (619)
Q Consensus 368 ~~~~a~~~~~ 377 (619)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 7766555443
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.37 E-value=13 Score=20.39 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHHHHhcCCchh
Q 047659 78 DMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
|+.+.|..+|++++...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5788999999999998876655
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.13 E-value=3.4e+02 Score=33.47 Aligned_cols=317 Identities=11% Similarity=-0.008 Sum_probs=169.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 148 (619)
.++.+-.+.+.+..|.-.+++. ...+...+. .+..+..+...|...+++++..-+..... ..|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~----------~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~s-- 1451 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKET----------EEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPS-- 1451 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHH----------HHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCcc--
Confidence 5666777899999999999985 111111110 01145555569999999999888877521 2222
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHH
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKI-LKRLC 224 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 224 (619)
...-+......|++..|...|+.+...+|+ . +..++......|.++...-..+-....- .+....++.+ +.+--
T Consensus 1452 -l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1452 -LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAW 1529 (2382)
T ss_pred -HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHh
Confidence 334445566789999999999999999984 3 8888888888898888887666655542 3333444433 34445
Q ss_pred hcCCcchHHHHHHHHHhCCCCCChhhHHHH--HHHHHh--cCCHHHHHHHHHHHHhCCCCC---------CHHHHHHHHH
Q 047659 225 INGQIGNASSLFDVLLLVGPKPNVVTFSTL--INAFCK--EAKLEKAFQLYNLMMEMDLVP---------DLIIYSILID 291 (619)
Q Consensus 225 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~m~~~~~~~---------~~~~~~~ll~ 291 (619)
+.++++....... . .+..+|... .....+ ..+.-.-.+..+-+++.-+.| -...|..+++
T Consensus 1530 ~l~qwD~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred hhcchhhhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHH
Confidence 6777777666554 1 123333332 222222 222222223333333221111 1123444443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-HHhC----CC-CCCHHHHHHHHH
Q 047659 292 GLFKAGRLKEGNELLLTALDRG----LKLDVVVFSSVMDAYVGIGDVGRAVQTYDR-MLNG----GF-LPNVISYSILIK 361 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~----~~-~~~~~~~~~ll~ 361 (619)
...-. +.....+...... ..-+..-|..-+..-....+..+-.--+++ +... +. .--..+|-...+
T Consensus 1603 LH~l~----el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1603 LHLLL----ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHHH----HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 33221 1111111111110 111112222222211111111111111111 1111 11 112346777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 362 GLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
..-..|+++.|...+-...+.+ .| ..+--.....-+.|+...|+.+++...+.
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7777999999988887777664 32 33444556667789999999999988754
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.35 E-value=32 Score=25.51 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
-..+.|++..|.+.+.+.........+... ......+...++......|++++|...+++.++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346889999999988888775333221000 0000114456677788889999999999988753
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.23 E-value=1.1e+02 Score=27.66 Aligned_cols=193 Identities=11% Similarity=0.102 Sum_probs=103.4
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSP---DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHM 200 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 200 (619)
+..++++|+.-|+.+++....... .++..++.++.+.+++++..+.|.+++. .
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------------------------Y 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------------------------Y 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH------------------------H
Confidence 345788888888888876444333 3556677888888888888777777642 1
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh----C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL----V-GPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...+..++ -+...-|.+++......+.+.....++.-++ . +-..=..|-..+...|...+.+.+..++++++.
T Consensus 95 IkSAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 95 IKSAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred HHHHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 11111111 1233344444444444444333333332211 0 001111233456667777777777777777776
Q ss_pred hC-----CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH-----HHcCCCHHHHH
Q 047659 276 EM-----DLV------PDLIIYSILIDGLFKAGRLKEGNELLLTALDRG-LKLDVVVFSSVMDA-----YVGIGDVGRAV 338 (619)
Q Consensus 276 ~~-----~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~-----~~~~~~~~~a~ 338 (619)
.. |-. .-...|..-|..|....+-.....++++..... --|.+.... +++- ..+.|++++|.
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 43 110 113456667777777777777777777765432 223443333 2332 34567777776
Q ss_pred HHHHH
Q 047659 339 QTYDR 343 (619)
Q Consensus 339 ~~~~~ 343 (619)
.-|-+
T Consensus 252 TDFFE 256 (440)
T KOG1464|consen 252 TDFFE 256 (440)
T ss_pred hHHHH
Confidence 44333
No 409
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.08 E-value=37 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
+.-++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44466777777777777777776 56665544444
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.80 E-value=41 Score=29.18 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=33.2
Q ss_pred ccCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 535 KGKNISVGLHMFKLMER-NGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
..++.+......+.+.+ ....|++.+|..++.++...|+.++|.++..++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444433333333332 12467888888888888888888888888888776
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.31 E-value=57 Score=27.65 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCCCC--HHh-----HHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 047659 504 LSSAILLFFQMLKRGLTPD--VIT-----YSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKEC 572 (619)
Q Consensus 504 ~~~A~~~~~~~~~~~~~p~--~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 572 (619)
++.|+.+|+.+.+.--.|+ ... -...+-.|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 5677777777766422221 111 122334566667777777777666652 34444344444444443
No 412
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.56 E-value=1.6e+02 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..++.+|...|...+|+++|.+...
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhh
Confidence 3444567788999999999988854
No 413
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.21 E-value=2.2e+02 Score=30.37 Aligned_cols=140 Identities=5% Similarity=-0.095 Sum_probs=69.1
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
....-....++.|++..+.++...+.. .....|.....+....+.. ...-+...+..+|+.+-. ..
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l~d-~pL~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~-----------~~ 100 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTLKD-YPLYPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPA-----------RS 100 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhccC-CCcHhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchH-----------HH
Confidence 334445555778888887777776653 1223333333332222221 122444555555543321 11
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~ 190 (619)
........+.+.+++...+.++. . ++.+....-..+.++...|+.++|......+-..+. +.+..++..+.+
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Confidence 33344445556666666555221 1 233555555566667777777767666665543332 225555555544
Q ss_pred cC
Q 047659 191 KG 192 (619)
Q Consensus 191 ~~ 192 (619)
.|
T Consensus 176 ~g 177 (644)
T PRK11619 176 SG 177 (644)
T ss_pred cC
Confidence 44
No 414
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=62.14 E-value=1.4e+02 Score=28.00 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=10.6
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 047659 259 CKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~ 276 (619)
.+.|+..+|.+.|+++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 355666666666665544
No 415
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.00 E-value=1.7e+02 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=31.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCCh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMR 80 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 80 (619)
....++..|...|+..-|..-+..+-. +..+.....+..+....++-
T Consensus 52 ~~~sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdk 99 (645)
T KOG0403|consen 52 KAVSIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDK 99 (645)
T ss_pred HHHHHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccch
Confidence 567888999999999888777766654 44444444555555444433
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.82 E-value=1.4e+02 Score=27.69 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.3
Q ss_pred HhhHHHHHHHHHhcCChhHHH
Q 047659 453 LFIFNTLMDGCCRLKRATDTV 473 (619)
Q Consensus 453 ~~~~~~l~~~~~~~~~~~~a~ 473 (619)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346888999999999887653
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.79 E-value=83 Score=24.96 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHH-HHHHH
Q 047659 491 HTVLIRGIASQGSLSSAILLFFQMLK-----RGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIA-IYNVL 564 (619)
Q Consensus 491 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 564 (619)
...+...+-..+.-.....++++... ...+-|.......+..--... .+.++|+.|..+|+.-... .|...
T Consensus 29 I~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~w 105 (126)
T PF08311_consen 29 IKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEW 105 (126)
T ss_dssp HHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHH
T ss_pred HHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 047659 565 LNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~ 585 (619)
...+...|++++|.++++.-.
T Consensus 106 A~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 106 AEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhC
No 418
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.01 E-value=44 Score=21.58 Aligned_cols=33 Identities=9% Similarity=-0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
..++-.+.+.|++++|+...+.+++..|.+..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456677889999999999999999999987664
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.42 E-value=34 Score=29.66 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=44.4
Q ss_pred ccCCchhHHHHHHHhhc----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 44 KTNNPTPAIQFFKWTHN----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
..++.+......+++.. .|++..+..++.++..+|+.++|....+++....|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666666666666665 78999999999999999999999999999999887
No 420
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.29 E-value=16 Score=33.46 Aligned_cols=62 Identities=8% Similarity=-0.028 Sum_probs=50.0
Q ss_pred HHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF 100 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 100 (619)
.....+.|+.+.|..+|+.+.. |.++.....++...-..++.-+|-..|-+++...|.+.++
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3344668888999999998887 8888888888888877888888888888888888877664
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.36 E-value=74 Score=26.02 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
-...++..+...+++-.|.++++.+.+.++..+..|.+..+..+...|-.
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 45677778888888888999999998888888888888888888777643
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.15 E-value=45 Score=20.96 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=17.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 535 KGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555666665555555555555444
No 423
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.15 E-value=89 Score=25.55 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
...+.+.|+.++.. ...++..+...+..-.|.++++.+.+.++.-+..|-..-+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444555544443 44556666666666677777777776655555444333344443333
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.90 E-value=22 Score=27.23 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=16.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 047659 526 YSAIIHGLFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (619)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666665554
No 425
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.41 E-value=3.4e+02 Score=30.63 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN 60 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~ 60 (619)
.....+..++.+++|.+|....+.-.-
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~RkhRI 722 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRKHRI 722 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 667788888999999999998887553
No 426
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.13 E-value=29 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH-HHHHHHHcCChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF-LIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
+.++..|...++-.-+.|-+.+....+.++++.+|.+.+ .|.. ...-+.-.++++.++.+|++.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd--------------lWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD--------------LWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce--------------eeeeeccchhhhhccHHHHHHHHHhhh
Confidence 445555555555555555666666666666666555544 2222 2233444556666666666665
Q ss_pred hCCCCCCHHhHHHH
Q 047659 140 DMGIYLSPDLVQRL 153 (619)
Q Consensus 140 ~~~~~~~~~~~~~l 153 (619)
..++. +|..|...
T Consensus 170 R~N~~-~p~iw~ey 182 (435)
T COG5191 170 RMNSR-SPRIWIEY 182 (435)
T ss_pred ccCCC-CchHHHHH
Confidence 55433 44444443
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.93 E-value=17 Score=31.87 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=51.4
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
...+.++.+.|.+++.++.. |.....|..++....+.|+++.|.+.|++.++.+|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 35678899999999999998 8888999999999999999999999999999988764
No 428
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.80 E-value=1.8e+02 Score=27.15 Aligned_cols=20 Identities=15% Similarity=0.592 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhcCccccc
Q 047659 593 IITYNTIICGYCSLNSCLID 612 (619)
Q Consensus 593 ~~~~~~ll~~~~~~~~~~~~ 612 (619)
..+|.-|+.++|..|..+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 45666777777777766554
No 429
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.62 E-value=2.7e+02 Score=29.27 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=31.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc---CCC--CccHHHHHHHHHccCChhHHHHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN---CVS--SPNIAQLIHVLLQSDMRDVASHVFDKM 90 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (619)
.+-..+..+..+-+.....+..+.+.. |.. +.-| ..+..+.-+|.++.|..+++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW-~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFW-DYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHH-HHHHHHHHTT-HHHHHHHH-TT
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHH-HHHHHHHHcCCHHHHHHHHHhc
Confidence 345556666655555555554444333 222 3444 4677788889999999988544
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.58 E-value=13 Score=29.31 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 571 ECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 571 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
.|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35555666667777766666553 4555544
No 431
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.22 E-value=79 Score=22.99 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047659 304 ELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEA 372 (619)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 372 (619)
++++.+.+.|+- +......+-.+--..|+.+.|.+++..+. . .+..|..++.++-+.|+-+-|
T Consensus 23 ~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 23 DVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 444445555432 33333333222224455566666665555 3 223345555555555544433
No 432
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=53.18 E-value=21 Score=20.11 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 573 NLDAALKLFGQLTDRGLEPDIITYNT 598 (619)
Q Consensus 573 ~~~~A~~~~~~~~~~g~~p~~~~~~~ 598 (619)
.++.|..+|++... +.|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHH
Confidence 46788889999887 5688877753
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.24 E-value=1e+02 Score=28.64 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047659 508 ILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLI 569 (619)
Q Consensus 508 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (619)
.++|+.+.+.++.|.-..|.++.-.+...-.+.+.+.+|+.+.. |+.-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 35666666667777777777766666666677777777777665 2223555555554
No 434
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.12 E-value=28 Score=30.63 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=49.6
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
......|+.+.|.++|.+++..-|.... .|..+...--+.|+++.|.+.+++.++.++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~--------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAA--------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhh--------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456788999999999999987666555 8888998889999999999999999887654
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.06 E-value=2.2e+02 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~ 138 (619)
++...+.-|++-|+-+.|.+.+++.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445555555555555555555444
No 436
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=50.99 E-value=2e+02 Score=26.38 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=79.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCCh-----hHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMR-----DVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+..++..+++++....|+.+.+.... +...-+.-.+.+........ ......+.+.++--.
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~------------ 151 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQ------------ 151 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH------------
Confidence 677899999999999999999888875 44444444444333322211 122233333332111
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--c-----c
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--C-----V 180 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-----~ 180 (619)
..+ .|..++..|.|.=+...=..+|+.+ . +|. .++.-+.+.|+.+.|-.++-=+..... . .
T Consensus 152 --~f~-~~l~Ivv~C~RKtE~~~W~~LF~~l----g--~P~---dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~ 219 (258)
T PF07064_consen 152 --EFP-EYLEIVVNCARKTEVRYWPYLFDYL----G--SPR---DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEES 219 (258)
T ss_pred --cCc-chHHHHHHHHHhhHHHHHHHHHHhc----C--CHH---HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 111 2334444444443433333333322 1 222 345555566666665554443332222 1 1
Q ss_pred ---hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 181 ---YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 181 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
-..++......++++.+.++.+-+...+
T Consensus 220 ~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 220 RQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3445666677888888888887776654
No 437
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.93 E-value=2.2e+02 Score=28.91 Aligned_cols=19 Identities=0% Similarity=-0.055 Sum_probs=14.3
Q ss_pred HccCChhHHHHHHHHHHHh
Q 047659 75 LQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~ 93 (619)
...|+...|..++++++..
T Consensus 211 ~S~Gd~RdAL~lLeq~i~~ 229 (484)
T PRK14956 211 KGDGSVRDMLSFMEQAIVF 229 (484)
T ss_pred HcCChHHHHHHHHHHHHHh
Confidence 3468888888888887653
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.89 E-value=44 Score=30.91 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=25.2
Q ss_pred cCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 556 PDIA-IYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITY 596 (619)
Q Consensus 556 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 596 (619)
||.. .|+.-|+...+.||+++|+.++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3433 4556666777777777777777777766665444444
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.26 E-value=1.1e+02 Score=23.28 Aligned_cols=82 Identities=10% Similarity=-0.030 Sum_probs=39.9
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQ 203 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 203 (619)
-....++|..+.+.+...+.. ...+-...+..+.++|+|++| +........||.-..++-+-.+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCAWKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345667787777777665431 223333444556677777777 22222222224333333344456666666666665
Q ss_pred HHHCC
Q 047659 204 VIQRG 208 (619)
Q Consensus 204 ~~~~~ 208 (619)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55444
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.18 E-value=42 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047659 494 LIRGIASQGSLSSAILLFFQML 515 (619)
Q Consensus 494 l~~~~~~~g~~~~A~~~~~~~~ 515 (619)
+|.++...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444433
No 441
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.34 E-value=4.4e+02 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=11.0
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 047659 153 LMSCLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~ 172 (619)
.++-+...++|.+|..+.++
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 44445556666666655554
No 442
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=76 Score=29.83 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHHHHHH
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMG---IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFLMNGL 188 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l~~~~ 188 (619)
|--=++-|.+..++..|...|.+.++.. +..+...|+.-..+-.--|++..|+.=....+..+|+ + |..-..++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344556777888888888888887643 2234455666666666778888888888888888883 2 66667777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 047659 189 LRKGVIENAFHMHRQVI 205 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~ 205 (619)
....++..|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777777776654
No 443
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.78 E-value=1.4e+02 Score=29.90 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=28.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHH---hCCCCCCH-----HhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 118 LIENYVRIGKIDESVEIFAYMS---DMGIYLSP-----DLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
-.+.+...|++..|.+++...- ..|....+ -.|+.+.-++.+.|.+..+..+|.+++
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHH
Confidence 3445556677777777665441 11111111 123555555556666666665555554
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.71 E-value=1.2e+02 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
-|..|+..|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 677888888888888888888887766
No 445
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=48.64 E-value=1.4e+02 Score=23.98 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred CCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhh-CCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 144 YLSPDLVQRLMSCLVDSNSV---GQYYKLCRAMRG-KGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.++..+...+..++.+..+. .+.+.+++.+.+ ..| +-...+.-++.+.++++.++++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 45666777778888776654 456778888876 333 22666777888888888888888888876
No 446
>PF13934 ELYS: Nuclear pore complex assembly
Probab=48.63 E-value=2e+02 Score=25.73 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=51.7
Q ss_pred HHHHHHH--HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHh
Q 047659 115 YSFLIEN--YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLR 190 (619)
Q Consensus 115 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~ 190 (619)
+...+++ +...+++++|.+.+-. +...+.....++.++..+|+.+.|..+++.......+. ....... ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HH
Confidence 3344444 3445666666666611 22222333457777777777777777776643332222 2222222 55
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
++.+.+|..+.+...+.. ....+..++..+.
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 677777776665554321 1334444554444
No 447
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.97 E-value=69 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG 164 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (619)
.++..+...+.+-.|.++++.+.+.++..+..|....+..+.+.|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 455666666788889999999988888888888888888888877643
No 448
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.85 E-value=1.5e+02 Score=23.91 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=38.2
Q ss_pred CCCHHhHHHHHHHHHccCC---hHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 520 TPDVITYSAIIHGLFKGKN---ISVGLHMFKLMER-NGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.++..+--.+.+++.+..+ ..+.+.+++.+.+ ....-.....--|.-++.+.|+++.++++++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444555566665543 4455666666665 21122233444555567777777777777777776
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.77 E-value=51 Score=22.14 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 047659 563 VLLNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~ 585 (619)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555554443
No 450
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.62 E-value=2.1e+02 Score=25.61 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=50.8
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----------CCCHHhHHHHHHHHHccCChHHHHHHHH
Q 047659 480 GMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKR-GL-----------TPDVITYSAIIHGLFKGKNISVGLHMFK 547 (619)
Q Consensus 480 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (619)
...+++-+.....+++ +...||..+|+.-++.-... |. .|.+.....++..|.+ +++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 3344444444444444 44578888888777766542 11 3566666667766654 66788888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHH
Q 047659 548 LMERNGVAPDIAIYNVLLNML 568 (619)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~ 568 (619)
++-+.|+.|.. ..+.+.+.+
T Consensus 263 ~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 263 ELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHHcCCCHHH-HHHHHHHHH
Confidence 88887776543 334444444
No 451
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.52 E-value=4.6e+02 Score=29.03 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=63.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHhcCCc--chHHHHHHHHHhCCCCCChhhHHH--
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQRGF---VPNIVTCNKILKRLCINGQI--GNASSLFDVLLLVGPKPNVVTFST-- 253 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~-- 253 (619)
|..++..|...|..++|++++.+..+..- .....-+..++..+.+.+.. +-..+.-+......+......+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 89999999999999999999999987420 11122233345544444444 444444444443322211111111
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047659 254 ----------LINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLF 294 (619)
Q Consensus 254 ----------l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 294 (619)
-+-.|......+-+...++.+....-.++....+.++..|.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12234445555666666666665544455555666665554
No 452
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=56 Score=29.75 Aligned_cols=59 Identities=12% Similarity=-0.057 Sum_probs=52.7
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
.+.+.++++.|+...+.... |.++.-+..-+.+|.+.|.+.-|.+-++..+.+-|+.+.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34668999999999999888 888999999999999999999999999999998887655
No 453
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.17 E-value=72 Score=24.94 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
....++..+...+.+-.|.++++.+.+.++..+..|....+..+.+.|-.
T Consensus 9 ~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 9 QRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34567777778888999999999999988888889888888888887754
No 454
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.03 E-value=45 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHHHccCChhHHHHH
Q 047659 67 IAQLIHVLLQSDMRDVASHV 86 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~ 86 (619)
+..++-.+-..|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44555566666666666666
No 455
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.60 E-value=3.2e+02 Score=26.87 Aligned_cols=44 Identities=14% Similarity=-0.072 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHc---CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 114 DYSFLIENYVRI---GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 114 ~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
.+..++.++.+. .+++.|+-.+-+|++.|..|-..+...++-+.
T Consensus 248 ~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~As 294 (436)
T COG2256 248 AHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIAS 294 (436)
T ss_pred hHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 677777777654 68888888888888887654433333333333
No 456
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.43 E-value=1.6e+02 Score=23.36 Aligned_cols=43 Identities=12% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 047659 540 SVGLHMFKLMERNGVAPDI-AIYNVLLNMLIKECNLDAALKLFG 582 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 582 (619)
++..++|+.|..+|+-... ..|......+...|++++|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467789999988776444 467788888888999999999886
No 457
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.39 E-value=2.8e+02 Score=26.13 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=47.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
..++.+|-+.++|..|-..+.-+....|........ --..+..+++.|...|+..+|..+.++..
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~-------kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQ-------KLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHH-------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 368889999999999999988776654321110000 00178899999999999999999998874
No 458
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=44.34 E-value=4.5e+02 Score=28.52 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH---hcCChhHHHHHHHHHhhCCccc--hHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV---DSNSVGQYYKLCRAMRGKGFCV--YEFLMNGL 188 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~ 188 (619)
.+..|+..+.+.|++++....-..|...- +.++..|..-+.... ..+...++..+|++.+....++ |...+..+
T Consensus 115 ~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~ 193 (881)
T KOG0128|consen 115 QMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNYL 193 (881)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHHH
Confidence 67788889999999988777666666653 346777766554432 3466778888888887766533 55555544
Q ss_pred Hh-------cCCHHHHHHHHHHHHHC
Q 047659 189 LR-------KGVIENAFHMHRQVIQR 207 (619)
Q Consensus 189 ~~-------~~~~~~A~~~~~~~~~~ 207 (619)
.. .++++.-..+|.++++.
T Consensus 194 ~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 194 VGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HhccccccccccchhhhHHHHHHHhh
Confidence 43 34455566666665544
No 459
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.80 E-value=48 Score=30.68 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY 286 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 286 (619)
.|+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3556666666777777777777777766665333333
No 460
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.13 E-value=2.7e+02 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=13.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~ 201 (619)
...+...+.+.|++..|+..|
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHH
Confidence 666666777777776666544
No 461
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.01 E-value=2.7e+02 Score=25.68 Aligned_cols=89 Identities=9% Similarity=-0.037 Sum_probs=63.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 047659 323 SVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK-- 400 (619)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-- 400 (619)
.=|.+++..+++.+++...-+..+.--+........-|-.|.+.+.+..+.++-....+..-.-+...|.++++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 336788899999988876655554322334455556666789999999999998888765433344457777766654
Q ss_pred ---cCChHHHHHHH
Q 047659 401 ---SGKLRDGFSLY 411 (619)
Q Consensus 401 ---~~~~~~a~~~~ 411 (619)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 69999998877
No 462
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=3.2e+02 Score=26.03 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC---CCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCH
Q 047659 459 LMDGCCRLKRATDTVKLFMLMGMY---NIKPDVITHT--VLIRGIASQGSLSSAILLFFQMLK-----RGLTPDV 523 (619)
Q Consensus 459 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~ 523 (619)
++...-+.++.++|+++++++... .-.|+.+.|. .+.+.+...||..++.+++.+..+ .+++|++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 334444555677777777666431 1234554443 334445556677777666666655 3555544
No 463
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.17 E-value=2.6e+02 Score=24.81 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=37.3
Q ss_pred hHHHHHHHHHccCCh-------HHHHHHHHHHHHCCCC----cCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 525 TYSAIIHGLFKGKNI-------SVGLHMFKLMERNGVA----PDI-AIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 525 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
.+.-+.+.|...|+. ..|.+.|.+..+..-. .+. ...-.+.....+.|+.++|.+.|.++...+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 444555566666663 3445555555442111 122 23334455667788888888888888864433
No 464
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.02 E-value=1.1e+02 Score=28.92 Aligned_cols=101 Identities=8% Similarity=0.021 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..-++-|.+..++..|...|.+.+.....+++.. .+.|+.-+.+-.-.|++..|+.=....++..|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dln----------avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~ 151 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLN----------AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT 151 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3445567788889999999999999999877665521 116777777777789999999999999887654
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
...++..-..++....++++|..+++.....
T Consensus 152 -h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 152 -HLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred -hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 6677777778888888888998888876543
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.79 E-value=4.9e+02 Score=27.93 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=72.9
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccH------HHHHHHHH---ccCChhHHHHHHHHHHHhcCCc
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNI------AQLIHVLL---QSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~------~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
..++|+....++..|....+++.-+++.+.+.. |+..... ...+.++- +-|+.++|....-.+++..+..
T Consensus 197 ~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 197 DVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred cccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999999998886 3222211 12222332 4478888888888887754432
Q ss_pred -hhHH----HHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 047659 98 -YNFF----RLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 98 -~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (619)
++.+ |.+++.+ +...|...+..+.|.+.|++.-+. .|+..+=..+...+...|
T Consensus 277 apDm~Cl~GRIYKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred CCceeeeechhhhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhh
Confidence 2210 1111111 112233456677788888888763 444443333344443343
No 466
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.71 E-value=44 Score=26.60 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=14.3
Q ss_pred CCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 047659 227 GQIGNASSLFDVLLLVGPKPNVVTFSTLIN 256 (619)
Q Consensus 227 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 256 (619)
|.-.+|..+|.+|++.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4445555555555555555443 444443
No 467
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.66 E-value=3.4e+02 Score=26.03 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 540 SVGLHMFKLMERNGVAPDI----AIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
++...++..+.+. .|+. ..|-++++.....|.++.++.+|+++...|..|-...-.++++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555553 2332 3566667777777777777777777777777776666666666655
No 468
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.14 E-value=2.3e+02 Score=29.61 Aligned_cols=91 Identities=15% Similarity=0.216 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGP--KPNVVTFSTLINAFCKEAKLE------KAFQLYNLMMEMDLVPDLIIYSIL 289 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~~l 289 (619)
.+..+|..+|++..+.++++.....+- +.=...+|..++...+.|.++ .+.+.++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 688888899999999999888876421 222456788888888888753 233333333 345577788877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047659 290 IDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~ 311 (619)
+.+...--+-....-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333334444554443
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.10 E-value=1e+02 Score=28.66 Aligned_cols=58 Identities=17% Similarity=0.396 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 047659 543 LHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605 (619)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 605 (619)
.++|+.+.+.++.|.-..+..+.-.+...=...+.+.+|+.+.. |+.-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 47888999999999999998888888888899999999999875 55558888888874
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.02 E-value=2.1e+02 Score=26.00 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH----CCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047659 527 SAIIHGLFKGKNISVGLHMFKLMER----NGV-APDIAIYNVLLNMLIKECNLDAALKLFGQL 584 (619)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (619)
..+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566667778888888888877743 222 234445666677777778877777665444
No 471
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.95 E-value=1.2e+02 Score=20.47 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=29.3
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH-----HhcCChhHHHHH
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL-----VDSNSVGQYYKL 169 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~ 169 (619)
.+...|++=+|-++++.+....+.+....+..+|.+. .+.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3556788889999999887654444444555555442 355665555544
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.93 E-value=64 Score=34.58 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
.+++..+.+.|.++-|+++.+.-. ..+.+++..|+++.|.+.-.+.-..+ .|
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~---------tRF~LaLe~gnle~ale~akkldd~d-------------------~w 675 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDER---------TRFELALECGNLEVALEAAKKLDDKD-------------------VW 675 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcc---------hheeeehhcCCHHHHHHHHHhcCcHH-------------------HH
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHH
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIE 195 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 195 (619)
..|+....++|+.+-|.-.|++... |..+--.|.-.|+.++-.++-.-+..++. ...........|+++
T Consensus 676 ~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D--~~~~~qnalYl~dv~ 744 (1202)
T KOG0292|consen 676 ERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRND--ATGQFQNALYLGDVK 744 (1202)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhh--hHHHHHHHHHhccHH
Q ss_pred HHHHHHHH
Q 047659 196 NAFHMHRQ 203 (619)
Q Consensus 196 ~A~~~~~~ 203 (619)
+-..+++.
T Consensus 745 ervkIl~n 752 (1202)
T KOG0292|consen 745 ERVKILEN 752 (1202)
T ss_pred HHHHHHHh
No 473
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.88 E-value=78 Score=21.55 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=28.3
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 047659 521 PDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKE 571 (619)
Q Consensus 521 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 571 (619)
|+...++.+++.+++..-.++++..+.++.+.|. .+..+|-.-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666653 3555555555555443
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=39.75 E-value=1.2e+02 Score=20.45 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCChHHHHHH
Q 047659 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGF-----CKSGKLRDGFSL 410 (619)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~ 410 (619)
+...|++-+|-++++.+-.....+....+..+|+.. .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345677777777777776543333444555555443 345666666554
No 475
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.43 E-value=1.6e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=20.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
+......|++.-|.++.+.++..+|++..
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ 105 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEE 105 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHH
Confidence 33444688899999999999888887765
No 476
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.09 E-value=3.3e+02 Score=25.53 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHH
Q 047659 386 PSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 386 ~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
-|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46677888888887777655544
No 477
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.99 E-value=1.3e+02 Score=23.05 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
+++.+.++...++|+++++-|.+.| ..+....+.|-..+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3445556666666777777766665 334444444444433
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.98 E-value=1.1e+02 Score=27.73 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=42.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCC--chhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHH
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGK--TYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 138 (619)
..++..+...|++++|.++|+.+...... .+.. ...+...+..++.+.|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l----------~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSL----------LTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHH----------HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46888999999999999999999654221 1110 0115566777788888888877765544
No 479
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.92 E-value=2e+02 Score=26.40 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+=..+.+.++++.|....++.+..+|. ++.-+.--+-+|.+.|.+.-|++-++...+.-|
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 33444566666777777777766665544 555566666666666666666666666555555
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.80 E-value=2e+02 Score=24.35 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+++-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4455555556666777778888777777777777777777777766644
No 481
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.52 E-value=4.1e+02 Score=26.40 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=5.4
Q ss_pred HHcCChhhHHHH
Q 047659 123 VRIGKIDESVEI 134 (619)
Q Consensus 123 ~~~g~~~~A~~~ 134 (619)
++.|+.+-+..+
T Consensus 10 ~~~g~~~iv~~L 21 (413)
T PHA02875 10 ILFGELDIARRL 21 (413)
T ss_pred HHhCCHHHHHHH
Confidence 444555443333
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.35 E-value=1.8e+02 Score=24.57 Aligned_cols=60 Identities=7% Similarity=0.070 Sum_probs=32.4
Q ss_pred HHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH
Q 047659 514 MLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNL 574 (619)
Q Consensus 514 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 574 (619)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3344655554322 33444444455556677777776665555555555555566666644
No 483
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.06 E-value=1.4e+02 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=17.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 565 LNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
++.+.++.--++|+++++-|.++| ..+....+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444455555566666666666554 3344444433
No 484
>PRK09857 putative transposase; Provisional
Probab=37.98 E-value=3.1e+02 Score=25.75 Aligned_cols=66 Identities=8% Similarity=0.044 Sum_probs=40.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 526 YSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+..++.-....++.++..++++.+.+. ........-.++.-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444556666666666666554 222333444566666666766778888888888887655
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.96 E-value=4e+02 Score=26.14 Aligned_cols=90 Identities=10% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCHH
Q 047659 251 FSTLINAFCKEAKLEKAFQLYNLMMEMD--LVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---------GLKLDVV 319 (619)
Q Consensus 251 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~ 319 (619)
+.-+...|...|+++.|++.|.+.+..- .+.....|..+|..-.-.|+|........+.... .+++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 4445555555666666666655543321 1112233444444444555555544444444332 1233344
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++..+...+.+ ++..|.+.|-
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHH
Confidence 44444444333 5555555443
No 486
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.86 E-value=2.7e+02 Score=24.06 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhcCCHHH-----------
Q 047659 206 QRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV--------GPKPNVVTFSTLINAFCKEAKLEK----------- 266 (619)
Q Consensus 206 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~----------- 266 (619)
+.|..++...++.++..+.+..-...=...+-.++.+ +..-+......-+..|-+.|||.+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred --------------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 047659 267 --------------AFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIG 332 (619)
Q Consensus 267 --------------a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 332 (619)
|..+.++-+++-..| |-....+-++.-+.+++.+.+ =-.+--+++..|.+..
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vP----FceFAetV~k~~q~~e~dK~~----------LGRiGiS~m~~Yhk~~ 146 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVP----FCEFAETVCKDPQNDEVDKTL----------LGRIGISLMYSYHKTL 146 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCC----HHHHHHHHhcCCccchhhhhh----------hhHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 333 DVGRAVQTYDRMLNG--------------GFLPNVISYSILIKGLCQQGRLVEACGLFGQ 378 (619)
Q Consensus 333 ~~~~a~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (619)
++.+..++++.|.+. +..+--...|.-...+.++|..+.|..++++
T Consensus 147 qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 147 QWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 487
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.64 E-value=72 Score=18.88 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.++..++.+-...++++.|..-|++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678888888999999999999988763
No 488
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.60 E-value=1.7e+02 Score=23.95 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKEC 572 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 572 (619)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455555555555444444444333444444444
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.49 E-value=3.4e+02 Score=25.96 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhhCCccc------hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047659 164 GQYYKLCRAMRGKGFCV------YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC 224 (619)
Q Consensus 164 ~~A~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 224 (619)
++...++..+++.-|++ |..+++.....|.++..+.+|+.++..|-.|-......+++.+.
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666666666655533 66666666667777777777777777776666666666665544
No 490
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.22 E-value=3.3e+02 Score=25.00 Aligned_cols=102 Identities=9% Similarity=0.030 Sum_probs=45.1
Q ss_pred hcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCChhhHHHHHHHHHhcCCcc-hHH
Q 047659 159 DSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQ----VIQRGFVPNIVTCNKILKRLCINGQIG-NAS 233 (619)
Q Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~~~-~A~ 233 (619)
+++++++|++++..- ...+.+.|+..-|-++... ..+.+.+.+......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456667777665443 2244455555444443322 233355555555555555554443221 222
Q ss_pred HHHHHHH---hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 234 SLFDVLL---LVG--PKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 234 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
++.+.+. +.| ..-++.....+...|.+.|++.+|+..|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2222222 111 2234556666677777777777666554
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.92 E-value=3.7e+02 Score=25.07 Aligned_cols=82 Identities=9% Similarity=0.012 Sum_probs=40.1
Q ss_pred HcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----CChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCH
Q 047659 124 RIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS----NSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVI 194 (619)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~ 194 (619)
..+++..|...+......+ +......+...|... .+...|..+|....+.+. .....+...+.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 4566677777776665422 234444444444322 234556666665554443 223334444433 2244
Q ss_pred HHHHHHHHHHHHCC
Q 047659 195 ENAFHMHRQVIQRG 208 (619)
Q Consensus 195 ~~A~~~~~~~~~~~ 208 (619)
.+|..+++.+.+.|
T Consensus 130 ~~A~~~~~~Aa~~g 143 (292)
T COG0790 130 VKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555554
No 492
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.70 E-value=2e+02 Score=30.01 Aligned_cols=91 Identities=11% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHhHHHHHHHHHccCChH------HHHHHHHHHHHCCCCcCHHHHHHH
Q 047659 493 VLIRGIASQGSLSSAILLFFQMLKR--GLTPDVITYSAIIHGLFKGKNIS------VGLHMFKLMERNGVAPDIAIYNVL 564 (619)
Q Consensus 493 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 564 (619)
+++.+|...|++.++..+++..... |-+.-...+|..|+.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988864 33334567888888888888754 3444444444 44477888877
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 047659 565 LNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
+.+-..--.-.-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333444444443
No 493
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.67 E-value=6.9e+02 Score=28.18 Aligned_cols=354 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHH--------ccC--ChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 40 ANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLL--------QSD--MRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 40 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~--------~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+++..+.++.|+.+|+.+.. |...+.+-+.+++=. ..+ .+++|..-|+.....-+.+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 554 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE-------- 554 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH--------
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
|..-+-.|.+.|++++=++.+.-+.++-+....-... +-.-..++.+...+....++..++-+
T Consensus 555 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (932)
T PRK13184 555 -------YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL----------RDHLVYRLHESLYKHRREALVFMLLA 617 (932)
T ss_pred -------HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---hcCCHHHHHHHHHHHHHCCCCCChh---------hHHHHHHHHHh--cCCcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 188 LL---RKGVIENAFHMHRQVIQRGFVPNIV---------TCNKILKRLCI--NGQIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 188 ~~---~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~ll~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
.. ..-....-..+++.+...- .+..+ ....-+..+.. .|..----++|+...+ .++..+...
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 693 (932)
T PRK13184 618 LWIAPEKISSREEEKFLEILYHKQ-QATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWD---LRDYRALAD 693 (932)
T ss_pred HHhCcccccchHHHHHHHHHHhhc-cCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhh---cccHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEM--DLVPDLII----------YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVF 321 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 321 (619)
..-..+..|.++-+.+..+.+.+. .+.-.... |-.-+.+.....+++++.+.+.......+ ...+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 770 (932)
T PRK13184 694 IFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAF 770 (932)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHH
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047659 322 SSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV--ISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFC 399 (619)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 399 (619)
..++.-+...++.+....+.+.+.+...+... .....-+.+|....++++|.+++......-..-+....-.+-.+|.
T Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (932)
T PRK13184 771 DLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYL 850 (932)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHH
Q ss_pred h-cCChHHHHHHHHHHHHcCCCCCHhh
Q 047659 400 K-SGKLRDGFSLYDNMIKRGLKPDAVV 425 (619)
Q Consensus 400 ~-~~~~~~a~~~~~~~~~~~~~~~~~~ 425 (619)
. .++-+.|...|....+..+-|...+
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (932)
T PRK13184 851 ALTEDREAAKAHFSGCREDALFPRSLD 877 (932)
T ss_pred HhcCchhHHHHHHhhccccccCcchhh
No 494
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.61 E-value=2.5e+02 Score=23.01 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHH
Q 047659 320 VFSSVMDAYVGIGDVGRAVQTYDRMLNGG-----FLPNVISYSILIKGLCQQGR-LVEACGLFGQVLIRRLEPSLLTYSS 393 (619)
Q Consensus 320 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (619)
..+.++.-....+++...+.+++.+.... -..+..+|..++.+..+... ---+..+|.-+.+.+.+++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555655566666666666666653211 01345567777777766655 4455667777776677778888888
Q ss_pred HHHHHHhc
Q 047659 394 LIDGFCKS 401 (619)
Q Consensus 394 ll~~~~~~ 401 (619)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877654
No 495
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=35.51 E-value=1.9e+02 Score=21.78 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=19.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 127 KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..++|..+-+.+...+.. ....-..-+..+..+|+|++|..+.+..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~ 65 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL 65 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC
Confidence 345555555554432211 1112222334455556666555554443
No 496
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=5.5e+02 Score=26.62 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=87.2
Q ss_pred CChhhHHHHHHHHHhCCCC--------C---CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCH
Q 047659 126 GKIDESVEIFAYMSDMGIY--------L---SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVI 194 (619)
Q Consensus 126 g~~~~A~~~~~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (619)
..+++|...|.-....... . ...+...+..++..+|+.+.|..++++.+
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L-------------------- 311 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL-------------------- 311 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH--------------------
Confidence 4566777777766554211 1 23455566677778888877777666543
Q ss_pred HHHHHHHHHHHHCCC-------------CCChhhHHH---HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 195 ENAFHMHRQVIQRGF-------------VPNIVTCNK---ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 195 ~~A~~~~~~~~~~~~-------------~~~~~~~~~---ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
=.++.+..-.+ +-|...|.+ -|..+.+.|.+..|.+..+.+....+..|+.....+|+.|
T Consensus 312 ----y~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 312 ----YVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred ----HHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 11222221111 112222222 2344556788888888877777766665677777777766
Q ss_pred H-hcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 047659 259 C-KEAKLEKAFQLYNLMMEM---DLVPDLIIYSILIDGLFKAGR---LKEGNELLLTALD 311 (619)
Q Consensus 259 ~-~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~ 311 (619)
+ +..+++-.+++++..... ..-|+-.--.++...|..... ...|...+.++..
T Consensus 388 ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 388 ALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 4 556677777777666433 233444333344444444433 2334444444443
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.89 E-value=1.9e+02 Score=21.08 Aligned_cols=43 Identities=19% Similarity=0.473 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 544 HMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
++|+-....|+..|+.+|..+++.+.-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666666655566666666666653
No 498
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.64 E-value=6.8e+02 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQ 378 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 378 (619)
..+...|+.+....+-.-+.. |..++.-+.+.+.+++|++++..
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455666655554444433 45566666777777777766644
No 499
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.79 E-value=4.2e+02 Score=24.85 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 047659 394 LIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 394 ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
.++.....|++..|++++....
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444445555555555555444
No 500
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.63 E-value=4.9e+02 Score=25.60 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 047659 290 IDGLFKAGRLKEGNELLLTALDRGLKLDVV--VFSSVMDAYV--GIGDVGRAVQTYDRMLNGGFL--PNVISYSILIKGL 363 (619)
Q Consensus 290 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~ 363 (619)
+..+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++........ -....+..+....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 364 CQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
-....+.........-.+.-..+-....-.-..-=...|+++.|...+-++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Done!