Query 047659
Match_columns 619
No_of_seqs 638 out of 3431
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 23:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-39 6.2E-44 340.3 39.9 501 45-604 66-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.1E-38 7.2E-43 332.2 37.5 484 31-568 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-28 4.2E-33 243.1 44.8 359 38-417 5-368 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-28 2.8E-32 237.2 47.2 326 70-416 5-333 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.7E-34 253.8 23.7 139 469-607 86-224 (501)
6 4g26_A Pentatricopeptide repea 100.0 7.1E-29 2.4E-33 247.9 24.6 206 196-401 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4.1E-28 215.9 40.9 436 65-552 7-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 7E-24 2.4E-28 217.7 38.3 441 114-595 8-484 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.6E-23 5.4E-28 216.3 38.0 434 64-552 25-491 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 8.6E-23 2.9E-27 205.7 40.0 314 61-395 23-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.8E-23 2.7E-27 211.1 37.9 434 32-517 25-491 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 1.1E-22 3.7E-27 204.9 37.8 309 31-360 25-370 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.9E-20 6.5E-25 182.3 36.1 313 32-382 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4.8E-20 1.6E-24 179.4 37.8 316 64-424 3-340 (359)
15 3hym_B Cell division cycle pro 99.9 7.4E-20 2.5E-24 175.8 31.0 284 61-363 19-314 (330)
16 3hym_B Cell division cycle pro 99.9 2.6E-19 9E-24 172.0 32.2 287 31-335 21-322 (330)
17 2xm6_A Protein corresponding t 99.9 3E-17 1E-21 166.5 47.3 329 51-416 26-395 (490)
18 1xi4_A Clathrin heavy chain; a 99.9 2.4E-16 8.2E-21 166.9 53.8 406 28-502 981-1415(1630)
19 2ooe_A Cleavage stimulation fa 99.9 2.4E-17 8.2E-22 169.0 44.9 427 87-586 2-491 (530)
20 2xm6_A Protein corresponding t 99.9 1.7E-16 5.9E-21 160.9 49.9 366 129-554 24-434 (490)
21 2ooe_A Cleavage stimulation fa 99.8 2.7E-17 9.1E-22 168.7 41.7 418 61-552 10-492 (530)
22 1fch_A Peroxisomal targeting s 99.8 3.4E-19 1.2E-23 174.1 26.3 251 43-311 36-313 (368)
23 4eqf_A PEX5-related protein; a 99.8 1.8E-19 6.2E-24 175.8 23.8 263 62-342 63-351 (365)
24 1xi4_A Clathrin heavy chain; a 99.8 3.5E-16 1.2E-20 165.6 48.1 385 61-543 982-1375(1630)
25 4eqf_A PEX5-related protein; a 99.8 6.5E-19 2.2E-23 171.8 20.6 261 31-308 64-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 3.3E-18 1.1E-22 167.1 25.3 306 74-413 35-355 (368)
27 3cv0_A Peroxisome targeting si 99.8 6.3E-18 2.2E-22 162.0 26.8 262 63-342 20-310 (327)
28 3cv0_A Peroxisome targeting si 99.8 2.5E-18 8.4E-23 164.9 23.1 264 30-310 19-313 (327)
29 4g1t_A Interferon-induced prot 99.8 5.8E-16 2E-20 156.7 34.7 332 61-417 48-401 (472)
30 1b89_A Protein (clathrin heavy 99.8 6.8E-17 2.3E-21 153.4 24.8 387 123-581 14-411 (449)
31 4g1t_A Interferon-induced prot 99.8 6.2E-16 2.1E-20 156.5 31.8 363 34-418 53-460 (472)
32 1b89_A Protein (clathrin heavy 99.7 6.1E-16 2.1E-20 147.0 26.2 284 74-411 13-305 (449)
33 2pl2_A Hypothetical conserved 99.7 6E-17 2E-21 144.4 18.3 197 61-275 2-212 (217)
34 3spa_A Mtrpol, DNA-directed RN 99.7 6.4E-18 2.2E-22 173.2 10.1 152 452-608 126-287 (1134)
35 3mkr_A Coatomer subunit epsilo 99.7 1.9E-15 6.4E-20 141.0 25.8 251 119-382 6-264 (291)
36 2pl2_A Hypothetical conserved 99.7 2.7E-16 9.1E-21 140.2 18.6 194 31-240 4-212 (217)
37 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.7E-20 141.4 24.2 235 31-278 2-251 (272)
38 2h6f_A Protein farnesyltransfe 99.7 1.5E-15 5E-20 146.5 24.7 225 34-276 99-347 (382)
39 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-17 4.9E-22 170.7 11.0 120 486-605 125-248 (1134)
40 2h6f_A Protein farnesyltransfe 99.7 1.1E-15 3.7E-20 147.4 23.4 248 61-328 94-363 (382)
41 3mkr_A Coatomer subunit epsilo 99.7 1.5E-14 5.1E-19 134.9 29.4 253 154-422 6-267 (291)
42 3e4b_A ALGK; tetratricopeptide 99.7 8.2E-15 2.8E-19 146.1 28.4 314 68-417 7-351 (452)
43 3uq3_A Heat shock protein STI1 99.7 2.6E-15 8.9E-20 138.3 22.8 225 65-312 6-236 (258)
44 3e4b_A ALGK; tetratricopeptide 99.7 9E-15 3.1E-19 145.8 26.7 348 116-518 7-388 (452)
45 3uq3_A Heat shock protein STI1 99.7 4E-15 1.4E-19 137.0 22.4 228 32-277 5-236 (258)
46 3u4t_A TPR repeat-containing p 99.7 7.9E-15 2.7E-19 136.3 24.2 235 63-313 2-251 (272)
47 2q7f_A YRRB protein; TPR, prot 99.7 1.8E-15 6.3E-20 137.9 18.3 200 27-242 18-222 (243)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.8E-16 3.3E-20 142.7 14.8 242 44-306 17-269 (275)
49 2ho1_A Type 4 fimbrial biogene 99.6 5.1E-14 1.8E-18 129.1 24.8 197 64-277 37-238 (252)
50 2ho1_A Type 4 fimbrial biogene 99.6 3.2E-14 1.1E-18 130.5 23.2 197 32-243 37-239 (252)
51 1ouv_A Conserved hypothetical 99.6 1.8E-13 6.3E-18 127.0 28.7 224 62-313 4-252 (273)
52 2vq2_A PILW, putative fimbrial 99.6 4.8E-14 1.6E-18 126.7 23.4 198 63-276 7-210 (225)
53 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.7E-16 127.6 43.6 471 77-607 45-588 (679)
54 1ouv_A Conserved hypothetical 99.6 1.1E-13 3.8E-18 128.5 26.5 223 31-278 5-252 (273)
55 2q7f_A YRRB protein; TPR, prot 99.6 9E-15 3.1E-19 133.3 18.6 200 61-277 20-222 (243)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.4E-15 2.2E-19 137.1 15.3 225 73-312 14-244 (275)
57 2vq2_A PILW, putative fimbrial 99.6 6.9E-14 2.4E-18 125.6 20.9 198 31-242 7-211 (225)
58 4e6h_A MRNA 3'-END-processing 99.6 3.2E-11 1.1E-15 124.1 40.9 432 47-517 47-570 (679)
59 2ond_A Cleavage stimulation fa 99.6 2E-13 6.8E-18 129.0 22.6 213 49-277 33-270 (308)
60 2ond_A Cleavage stimulation fa 99.6 1.6E-12 5.3E-17 122.9 28.0 216 81-313 33-271 (308)
61 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-13 5E-18 119.2 18.2 163 63-241 4-169 (184)
62 4a1s_A PINS, partner of inscut 99.6 5E-14 1.7E-18 139.6 16.8 199 34-240 50-290 (411)
63 4abn_A Tetratricopeptide repea 99.6 5.9E-14 2E-18 140.8 17.0 208 48-273 84-317 (474)
64 4a1s_A PINS, partner of inscut 99.5 1.4E-13 4.7E-18 136.4 18.5 278 65-382 49-372 (411)
65 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-13 1.3E-17 116.5 18.7 163 31-208 4-171 (184)
66 3sf4_A G-protein-signaling mod 99.5 1.6E-13 5.3E-18 135.8 18.2 301 63-404 8-363 (406)
67 3sf4_A G-protein-signaling mod 99.5 1.9E-13 6.4E-18 135.1 18.1 236 32-275 9-294 (406)
68 3ro2_A PINS homolog, G-protein 99.5 1E-13 3.6E-18 133.0 15.7 279 34-346 7-331 (338)
69 3ro2_A PINS homolog, G-protein 99.5 2.3E-13 7.8E-18 130.6 17.5 281 66-382 7-332 (338)
70 3ulq_A Response regulator aspa 99.5 1E-12 3.5E-17 128.6 22.3 311 29-381 6-367 (383)
71 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-12 3.7E-17 136.8 18.7 165 61-241 6-173 (723)
72 4abn_A Tetratricopeptide repea 99.5 7.3E-13 2.5E-17 132.9 16.9 194 146-343 101-317 (474)
73 4gyw_A UDP-N-acetylglucosamine 99.4 2.4E-12 8.3E-17 134.1 18.1 162 31-207 8-174 (723)
74 4i17_A Hypothetical protein; T 99.4 7.7E-12 2.6E-16 112.4 18.9 201 30-254 5-220 (228)
75 3ulq_A Response regulator aspa 99.4 1.6E-11 5.3E-16 120.2 22.2 301 73-417 21-368 (383)
76 3nf1_A KLC 1, kinesin light ch 99.4 5.5E-13 1.9E-17 126.4 10.3 244 61-311 24-306 (311)
77 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.9E-16 106.5 17.4 159 34-207 10-173 (186)
78 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.2E-17 122.8 12.5 234 31-276 26-306 (311)
79 4i17_A Hypothetical protein; T 99.4 1.6E-11 5.6E-16 110.3 18.1 204 61-289 4-220 (228)
80 1hz4_A MALT regulatory protein 99.4 8.1E-11 2.8E-15 114.7 23.5 266 37-310 19-320 (373)
81 3q15_A PSP28, response regulat 99.4 1E-10 3.5E-15 114.1 23.4 237 29-275 6-288 (378)
82 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.7E-16 106.6 14.8 160 114-276 10-172 (186)
83 2pzi_A Probable serine/threoni 99.3 5.4E-12 1.8E-16 132.5 14.1 182 61-263 391-583 (681)
84 1hz4_A MALT regulatory protein 99.3 4.4E-10 1.5E-14 109.4 26.6 231 114-344 16-279 (373)
85 3urz_A Uncharacterized protein 99.3 1.5E-11 5.2E-16 108.4 14.0 169 32-217 4-194 (208)
86 3qky_A Outer membrane assembly 99.3 2.7E-11 9.3E-16 111.4 15.4 139 28-178 11-179 (261)
87 3edt_B KLC 2, kinesin light ch 99.3 2.7E-11 9.2E-16 112.8 14.8 155 42-207 11-198 (283)
88 4ga2_A E3 SUMO-protein ligase 99.3 9.1E-12 3.1E-16 103.2 10.1 136 42-192 7-148 (150)
89 3q15_A PSP28, response regulat 99.3 8.5E-10 2.9E-14 107.5 25.2 231 68-311 14-289 (378)
90 3dra_A Protein farnesyltransfe 99.3 1.9E-09 6.5E-14 99.4 25.8 227 34-276 34-286 (306)
91 3urz_A Uncharacterized protein 99.3 6.6E-11 2.3E-15 104.3 14.8 161 64-241 4-185 (208)
92 3qky_A Outer membrane assembly 99.3 1.3E-10 4.5E-15 106.7 16.2 107 61-178 12-128 (261)
93 3edt_B KLC 2, kinesin light ch 99.2 8.3E-11 2.8E-15 109.5 14.7 161 75-241 12-197 (283)
94 2r5s_A Uncharacterized protein 99.2 1E-10 3.4E-15 100.1 13.7 160 65-240 7-171 (176)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.2E-10 1.1E-14 101.3 17.6 187 31-244 3-215 (225)
96 4ga2_A E3 SUMO-protein ligase 99.2 2.9E-11 9.8E-16 100.2 9.7 142 70-227 3-148 (150)
97 2pzi_A Probable serine/threoni 99.2 8.8E-11 3E-15 123.3 15.1 148 146-298 432-583 (681)
98 2r5s_A Uncharacterized protein 99.2 1E-10 3.5E-15 100.1 12.9 158 33-206 7-172 (176)
99 3qou_A Protein YBBN; thioredox 99.2 2.4E-10 8.1E-15 106.3 15.8 164 61-240 114-282 (287)
100 1qqe_A Vesicular transport pro 99.2 8.8E-10 3E-14 102.9 18.2 175 47-241 32-227 (292)
101 3qou_A Protein YBBN; thioredox 99.2 1.9E-10 6.4E-15 107.0 13.4 161 31-206 116-283 (287)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 9.4E-10 3.2E-14 98.3 17.4 189 63-278 3-214 (225)
103 3dra_A Protein farnesyltransfe 99.2 1E-08 3.5E-13 94.6 24.6 219 76-311 44-286 (306)
104 1qqe_A Vesicular transport pro 99.1 9.5E-10 3.2E-14 102.7 16.2 196 34-239 39-266 (292)
105 3mv2_B Coatomer subunit epsilo 99.1 7.8E-09 2.7E-13 94.2 21.4 251 28-313 10-283 (310)
106 2vsy_A XCC0866; transferase, g 99.1 4.1E-10 1.4E-14 116.3 14.8 157 45-217 2-166 (568)
107 2fo7_A Synthetic consensus TPR 99.1 9.1E-10 3.1E-14 89.2 13.8 127 66-207 3-132 (136)
108 3gyz_A Chaperone protein IPGC; 99.1 3.6E-10 1.2E-14 92.9 11.3 104 61-179 33-136 (151)
109 2fo7_A Synthetic consensus TPR 99.1 2E-09 6.9E-14 87.1 15.5 126 114-241 3-131 (136)
110 4gco_A Protein STI-1; structur 99.1 1.2E-09 4.2E-14 87.0 12.3 103 36-153 17-121 (126)
111 2uy1_A Cleavage stimulation fa 99.1 7.1E-07 2.4E-11 89.2 34.5 409 124-606 6-449 (493)
112 3mv2_B Coatomer subunit epsilo 99.1 5E-09 1.7E-13 95.5 16.9 177 83-277 85-282 (310)
113 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-09 1.5E-13 92.8 16.1 172 50-243 4-198 (212)
114 2vsy_A XCC0866; transferase, g 99.1 2.3E-09 7.9E-14 110.6 16.2 153 77-245 2-160 (568)
115 3q7a_A Farnesyltransferase alp 99.1 4.9E-08 1.7E-12 90.8 23.3 178 36-229 57-258 (349)
116 4gco_A Protein STI-1; structur 99.0 1.2E-09 4E-14 87.1 10.4 103 61-178 10-112 (126)
117 4f3v_A ESX-1 secretion system 99.0 4.3E-10 1.5E-14 101.0 8.2 199 44-244 18-239 (282)
118 2uy1_A Cleavage stimulation fa 99.0 3.9E-07 1.3E-11 91.2 29.7 77 468-550 335-411 (493)
119 3q7a_A Farnesyltransferase alp 99.0 1.3E-07 4.4E-12 88.1 24.1 172 75-263 65-257 (349)
120 2e2e_A Formate-dependent nitri 99.0 3.3E-09 1.1E-13 90.8 11.8 122 42-178 20-146 (177)
121 3rjv_A Putative SEL1 repeat pr 99.0 3.6E-08 1.2E-12 86.8 18.4 175 130-313 4-198 (212)
122 2c2l_A CHIP, carboxy terminus 99.0 2.7E-09 9.2E-14 98.8 11.4 192 62-276 2-198 (281)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.5E-08 5E-13 89.7 15.0 129 35-178 9-152 (213)
124 2vgx_A Chaperone SYCD; alterna 98.9 1.5E-09 5.2E-14 89.3 7.1 103 61-178 18-120 (148)
125 2ifu_A Gamma-SNAP; membrane fu 98.9 2.4E-08 8.1E-13 93.9 16.1 127 71-206 43-183 (307)
126 3dss_A Geranylgeranyl transfer 98.9 3.3E-07 1.1E-11 85.0 23.2 175 36-226 33-240 (331)
127 3gyz_A Chaperone protein IPGC; 98.9 5.1E-09 1.7E-13 86.0 9.8 97 33-143 37-135 (151)
128 1a17_A Serine/threonine protei 98.9 1.7E-08 6E-13 85.0 13.3 124 34-172 15-142 (166)
129 1p5q_A FKBP52, FK506-binding p 98.9 2.3E-09 7.9E-14 102.0 8.5 161 45-206 126-293 (336)
130 2lni_A Stress-induced-phosphop 98.9 2.4E-08 8.3E-13 80.4 12.3 119 28-161 12-132 (133)
131 1a17_A Serine/threonine protei 98.9 4E-08 1.4E-12 82.7 13.7 126 65-205 14-144 (166)
132 2c2l_A CHIP, carboxy terminus 98.9 1E-09 3.5E-14 101.7 3.9 191 31-241 3-198 (281)
133 2xcb_A PCRH, regulatory protei 98.8 1.1E-08 3.9E-13 83.6 9.7 103 61-178 15-117 (142)
134 2e2e_A Formate-dependent nitri 98.8 3.1E-08 1.1E-12 84.6 12.2 120 74-208 20-145 (177)
135 1hxi_A PEX5, peroxisome target 98.8 2.4E-08 8.2E-13 78.8 10.6 97 67-178 20-116 (121)
136 4f3v_A ESX-1 secretion system 98.8 2.1E-08 7.3E-13 90.1 11.3 187 76-277 18-237 (282)
137 2vyi_A SGTA protein; chaperone 98.8 3.7E-08 1.3E-12 79.0 11.6 114 34-162 14-129 (131)
138 2vgx_A Chaperone SYCD; alterna 98.8 1.1E-08 3.9E-13 84.1 8.5 109 85-208 8-119 (148)
139 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.9E-07 6.5E-12 82.4 17.0 126 114-244 8-152 (213)
140 2lni_A Stress-induced-phosphop 98.8 3.5E-08 1.2E-12 79.5 11.2 115 61-190 13-130 (133)
141 3upv_A Heat shock protein STI1 98.8 3.2E-08 1.1E-12 78.9 10.7 94 34-141 6-101 (126)
142 3dss_A Geranylgeranyl transfer 98.8 2.3E-06 7.8E-11 79.4 24.4 187 74-277 39-267 (331)
143 3upv_A Heat shock protein STI1 98.8 4.1E-08 1.4E-12 78.3 10.9 99 64-177 4-102 (126)
144 2ifu_A Gamma-SNAP; membrane fu 98.8 1E-07 3.5E-12 89.6 15.4 193 44-275 3-222 (307)
145 3gw4_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 86.7 11.0 158 42-207 2-176 (203)
146 2vyi_A SGTA protein; chaperone 98.8 4.1E-08 1.4E-12 78.7 10.7 115 63-192 11-128 (131)
147 1p5q_A FKBP52, FK506-binding p 98.8 1.1E-08 3.7E-13 97.4 8.2 150 76-240 125-292 (336)
148 1na0_A Designed protein CTPR3; 98.8 8.8E-08 3E-12 76.0 12.5 99 65-178 10-108 (125)
149 1na0_A Designed protein CTPR3; 98.8 1.2E-07 4.1E-12 75.2 13.1 109 34-157 11-121 (125)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 1.2E-08 4.3E-13 88.9 7.0 162 42-204 14-183 (198)
151 2xcb_A PCRH, regulatory protei 98.7 3.8E-08 1.3E-12 80.4 9.1 97 33-143 19-117 (142)
152 4gcn_A Protein STI-1; structur 98.7 9.3E-08 3.2E-12 76.2 11.1 111 34-153 10-122 (127)
153 1elw_A TPR1-domain of HOP; HOP 98.7 2E-07 6.9E-12 73.0 13.0 98 66-178 6-103 (118)
154 1hxi_A PEX5, peroxisome target 98.7 4E-08 1.4E-12 77.5 8.5 97 33-143 18-116 (121)
155 2kck_A TPR repeat; tetratricop 98.7 2E-07 6.8E-12 72.2 12.2 104 61-178 3-108 (112)
156 2fbn_A 70 kDa peptidylprolyl i 98.7 2.3E-08 7.7E-13 87.2 7.3 150 69-233 9-176 (198)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-07 4.9E-12 79.2 11.4 100 64-178 11-110 (164)
158 4gcn_A Protein STI-1; structur 98.7 2E-07 6.7E-12 74.3 11.5 100 65-178 9-114 (127)
159 2qfc_A PLCR protein; TPR, HTH, 98.7 6.9E-07 2.4E-11 83.3 17.0 168 64-239 75-263 (293)
160 1elw_A TPR1-domain of HOP; HOP 98.7 3.5E-07 1.2E-11 71.5 12.8 108 33-155 5-114 (118)
161 3q49_B STIP1 homology and U bo 98.7 1.4E-07 4.9E-12 76.3 10.8 103 61-178 6-108 (137)
162 3u3w_A Transcriptional activat 98.7 6.7E-07 2.3E-11 83.4 16.6 164 35-206 78-265 (293)
163 2xev_A YBGF; tetratricopeptide 98.7 5.7E-07 2E-11 71.8 13.8 102 65-178 3-107 (129)
164 2xev_A YBGF; tetratricopeptide 98.7 4.2E-07 1.4E-11 72.6 12.9 104 33-151 3-114 (129)
165 2qfc_A PLCR protein; TPR, HTH, 98.6 8.2E-07 2.8E-11 82.7 16.5 165 34-206 77-265 (293)
166 3sz7_A HSC70 cochaperone (SGT) 98.6 1.5E-07 5E-12 79.1 10.1 100 31-144 10-111 (164)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 5E-08 1.7E-12 97.1 8.3 160 45-205 247-413 (457)
168 3q49_B STIP1 homology and U bo 98.6 1.8E-07 6.1E-12 75.8 9.9 100 29-142 6-107 (137)
169 3u3w_A Transcriptional activat 98.6 1.2E-06 4E-11 81.7 15.7 162 70-239 81-263 (293)
170 2dba_A Smooth muscle cell asso 98.6 7E-07 2.4E-11 73.3 12.4 111 31-156 27-142 (148)
171 2kck_A TPR repeat; tetratricop 98.6 2.4E-07 8.3E-12 71.7 9.0 100 31-144 5-109 (112)
172 3gw4_A Uncharacterized protein 98.5 7.3E-07 2.5E-11 77.8 12.3 152 123-275 3-174 (203)
173 2dba_A Smooth muscle cell asso 98.5 7.2E-07 2.5E-11 73.2 11.6 106 61-178 25-130 (148)
174 1elr_A TPR2A-domain of HOP; HO 98.5 2.4E-07 8.3E-12 74.1 8.2 100 65-178 5-110 (131)
175 1dce_A Protein (RAB geranylger 98.5 2.3E-06 7.8E-11 87.0 17.1 178 38-231 34-244 (567)
176 1elr_A TPR2A-domain of HOP; HO 98.5 4.9E-07 1.7E-11 72.3 9.4 117 32-157 4-122 (131)
177 1wao_1 Serine/threonine protei 98.5 2.3E-07 7.9E-12 92.6 8.8 117 71-202 13-134 (477)
178 1wao_1 Serine/threonine protei 98.5 1.1E-07 3.8E-12 94.9 6.2 116 41-171 15-134 (477)
179 3k9i_A BH0479 protein; putativ 98.5 2.4E-07 8.1E-12 72.6 6.8 84 45-142 3-91 (117)
180 3rkv_A Putative peptidylprolyl 98.5 9.6E-07 3.3E-11 73.9 10.5 109 65-178 12-128 (162)
181 3k9i_A BH0479 protein; putativ 98.4 3.4E-07 1.2E-11 71.7 6.6 88 76-178 2-92 (117)
182 2hr2_A Hypothetical protein; a 98.4 1.4E-06 4.8E-11 70.4 9.5 111 65-178 12-133 (159)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.7E-06 5.8E-11 86.0 11.9 125 34-173 270-412 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.4 2.2E-06 7.4E-11 82.3 11.9 133 65-198 224-361 (370)
185 2hr2_A Hypothetical protein; a 98.4 2.7E-06 9.2E-11 68.8 10.3 96 33-142 12-132 (159)
186 2if4_A ATFKBP42; FKBP-like, al 98.4 7.6E-07 2.6E-11 84.6 8.4 137 64-207 179-328 (338)
187 4b4t_Q 26S proteasome regulato 98.4 6.7E-06 2.3E-10 81.5 15.6 166 32-205 4-202 (434)
188 4b4t_Q 26S proteasome regulato 98.3 8.5E-06 2.9E-10 80.8 16.0 177 64-240 4-202 (434)
189 2if4_A ATFKBP42; FKBP-like, al 98.3 1.7E-06 5.7E-11 82.2 9.4 95 148-243 231-329 (338)
190 3rkv_A Putative peptidylprolyl 98.3 2.1E-06 7.3E-11 71.7 9.1 108 32-154 11-139 (162)
191 1dce_A Protein (RAB geranylger 98.3 1.4E-05 4.9E-10 81.1 15.9 170 77-263 42-241 (567)
192 1ihg_A Cyclophilin 40; ppiase 98.3 2.8E-06 9.7E-11 81.5 9.9 120 34-168 225-362 (370)
193 3ro3_A PINS homolog, G-protein 98.3 6.7E-06 2.3E-10 68.4 11.1 133 65-205 10-156 (164)
194 2l6j_A TPR repeat-containing p 98.2 8.1E-07 2.8E-11 68.7 4.2 94 64-172 4-103 (111)
195 3ro3_A PINS homolog, G-protein 98.2 7E-06 2.4E-10 68.3 10.3 134 34-175 11-157 (164)
196 2kat_A Uncharacterized protein 98.2 3.9E-06 1.3E-10 65.3 8.0 79 49-141 2-82 (115)
197 1zu2_A Mitochondrial import re 98.2 2.1E-06 7.1E-11 69.3 5.2 88 42-143 12-122 (158)
198 1na3_A Designed protein CTPR2; 98.1 9.3E-06 3.2E-10 59.8 8.4 81 64-159 9-89 (91)
199 1zu2_A Mitochondrial import re 98.1 5.9E-06 2E-10 66.6 6.9 90 75-179 13-123 (158)
200 2kat_A Uncharacterized protein 98.1 1.1E-05 3.9E-10 62.6 8.2 83 81-178 2-84 (115)
201 3ma5_A Tetratricopeptide repea 98.1 9.1E-06 3.1E-10 61.2 7.3 84 61-158 4-88 (100)
202 1klx_A Cysteine rich protein B 98.0 6.4E-05 2.2E-09 60.4 12.0 110 47-177 10-127 (138)
203 2l6j_A TPR repeat-containing p 98.0 4E-06 1.4E-10 64.6 3.4 99 32-138 4-104 (111)
204 3n71_A Histone lysine methyltr 97.9 3.9E-05 1.3E-09 75.9 10.6 124 41-175 318-463 (490)
205 1na3_A Designed protein CTPR2; 97.9 3.6E-05 1.2E-09 56.5 8.0 81 32-126 9-91 (91)
206 3n71_A Histone lysine methyltr 97.9 0.00014 4.8E-09 72.0 13.1 97 72-174 317-420 (490)
207 1klx_A Cysteine rich protein B 97.8 0.0002 6.9E-09 57.4 11.8 109 79-208 10-127 (138)
208 3bee_A Putative YFRE protein; 97.7 0.00017 5.7E-09 52.9 7.6 70 61-144 3-75 (93)
209 3ma5_A Tetratricopeptide repea 97.6 0.00013 4.5E-09 54.7 7.3 66 31-96 6-73 (100)
210 3ly7_A Transcriptional activat 97.6 0.0016 5.6E-08 60.5 15.2 133 61-207 191-339 (372)
211 2kc7_A BFR218_protein; tetratr 97.5 5.9E-05 2E-09 56.5 3.2 62 38-99 6-70 (99)
212 2kc7_A BFR218_protein; tetratr 97.4 0.00016 5.4E-09 54.1 5.1 63 69-144 5-67 (99)
213 3u64_A Protein TP_0956; tetrat 97.3 0.0057 1.9E-07 54.4 14.0 85 194-280 179-272 (301)
214 3bee_A Putative YFRE protein; 97.3 0.0023 8E-08 46.7 9.5 64 114-178 8-74 (93)
215 3qwp_A SET and MYND domain-con 97.1 0.0012 4.2E-08 64.2 9.1 96 34-140 289-399 (429)
216 3qww_A SET and MYND domain-con 97.1 0.0013 4.3E-08 64.0 9.1 86 44-140 310-410 (433)
217 3ly7_A Transcriptional activat 97.1 0.016 5.3E-07 54.0 15.0 74 210-287 274-347 (372)
218 3u64_A Protein TP_0956; tetrat 97.0 0.026 9E-07 50.2 14.7 90 164-253 180-282 (301)
219 3qww_A SET and MYND domain-con 96.9 0.0072 2.5E-07 58.7 12.1 89 76-175 310-410 (433)
220 2v5f_A Prolyl 4-hydroxylase su 96.7 0.0082 2.8E-07 45.0 8.6 82 63-152 4-85 (104)
221 1pc2_A Mitochondria fission pr 96.7 0.0038 1.3E-07 49.7 6.8 77 130-207 16-100 (152)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.039 1.3E-06 59.3 17.4 128 41-207 608-736 (814)
223 1pc2_A Mitochondria fission pr 96.7 0.0064 2.2E-07 48.4 8.1 70 61-144 29-103 (152)
224 4h7y_A Dual specificity protei 96.6 0.037 1.3E-06 43.3 11.4 110 60-178 9-125 (161)
225 2v5f_A Prolyl 4-hydroxylase su 96.4 0.013 4.3E-07 44.0 7.8 71 29-99 2-81 (104)
226 3mkq_B Coatomer subunit alpha; 96.4 0.23 7.8E-06 40.6 15.5 103 120-239 13-115 (177)
227 3qwp_A SET and MYND domain-con 96.1 0.031 1.1E-06 54.3 10.8 92 495-586 294-399 (429)
228 3lvg_A Clathrin heavy chain 1; 95.8 4.9E-06 1.7E-10 78.5 -16.4 197 62-296 52-276 (624)
229 3mkq_B Coatomer subunit alpha; 95.8 0.45 1.5E-05 38.9 14.5 46 42-90 15-60 (177)
230 4h7y_A Dual specificity protei 95.8 0.17 5.7E-06 39.7 11.1 115 28-157 9-138 (161)
231 3mkq_A Coatomer beta'-subunit; 95.7 0.096 3.3E-06 56.2 13.5 103 30-169 626-729 (814)
232 1nzn_A CGI-135 protein, fissio 95.6 0.092 3.1E-06 40.1 9.0 94 496-593 9-107 (126)
233 4fhn_B Nucleoporin NUP120; pro 95.6 0.21 7.2E-06 55.5 15.8 161 34-196 814-989 (1139)
234 1wy6_A Hypothetical protein ST 95.6 0.57 1.9E-05 35.9 13.2 68 522-590 90-157 (172)
235 3lvg_A Clathrin heavy chain 1; 95.5 3.1E-05 1.1E-09 73.2 -12.3 222 111-366 53-276 (624)
236 3ffl_A Anaphase-promoting comp 95.4 0.089 3E-06 42.2 8.6 60 34-93 22-92 (167)
237 1nzn_A CGI-135 protein, fissio 95.4 0.19 6.3E-06 38.4 10.0 85 123-208 12-104 (126)
238 1wy6_A Hypothetical protein ST 95.1 0.83 2.8E-05 35.0 16.0 137 160-315 20-157 (172)
239 2ff4_A Probable regulatory pro 94.6 0.46 1.6E-05 45.4 13.2 57 116-173 175-231 (388)
240 1v54_E Cytochrome C oxidase po 93.2 1.2 4.1E-05 32.0 9.4 64 538-602 25-88 (109)
241 3ffl_A Anaphase-promoting comp 91.9 1 3.6E-05 36.1 8.8 131 61-207 17-151 (167)
242 4gns_B Protein CSD3, chitin bi 91.3 2.9 9.8E-05 43.4 13.7 139 31-174 247-398 (754)
243 2y69_E Cytochrome C oxidase su 91.2 2.4 8E-05 32.4 9.4 64 539-603 69-132 (152)
244 1qsa_A Protein (soluble lytic 91.1 14 0.00049 37.4 30.6 116 192-311 228-347 (618)
245 4gns_B Protein CSD3, chitin bi 91.1 0.97 3.3E-05 46.8 10.1 86 485-572 610-708 (754)
246 3o48_A Mitochondria fission 1 91.1 2.8 9.4E-05 32.2 10.0 72 520-593 37-111 (134)
247 4fhn_B Nucleoporin NUP120; pro 91.1 5.3 0.00018 44.4 16.8 85 215-301 901-989 (1139)
248 2ff4_A Probable regulatory pro 91.0 1.7 5.8E-05 41.4 11.2 71 149-219 173-251 (388)
249 3o48_A Mitochondria fission 1 90.3 3.8 0.00013 31.4 10.1 66 142-207 35-107 (134)
250 4b4t_P 26S proteasome regulato 89.4 16 0.00056 35.4 19.7 151 456-606 140-306 (445)
251 1zbp_A Hypothetical protein VP 88.0 1.4 4.7E-05 38.7 7.2 59 72-144 5-63 (273)
252 1zbp_A Hypothetical protein VP 87.7 2 6.7E-05 37.7 7.9 58 120-178 5-62 (273)
253 4ady_A RPN2, 26S proteasome re 87.5 33 0.0011 36.6 41.8 525 34-610 147-723 (963)
254 1y8m_A FIS1; mitochondria, unk 87.5 8.6 0.0003 29.9 11.9 71 520-592 36-109 (144)
255 1v54_E Cytochrome C oxidase po 87.4 4.5 0.00015 29.1 8.1 61 504-565 26-86 (109)
256 4b4t_P 26S proteasome regulato 87.3 22 0.00076 34.4 20.4 189 78-275 30-245 (445)
257 1y8m_A FIS1; mitochondria, unk 85.8 11 0.00037 29.4 11.5 65 143-207 35-106 (144)
258 4ady_A RPN2, 26S proteasome re 83.8 49 0.0017 35.3 38.2 268 326-604 382-672 (963)
259 2y69_E Cytochrome C oxidase su 82.1 9 0.00031 29.3 8.1 60 506-566 71-130 (152)
260 4b4t_S RPN3, 26S proteasome re 82.0 4.5 0.00015 39.5 8.3 66 32-97 231-303 (523)
261 4b4t_R RPN7, 26S proteasome re 81.7 9.1 0.00031 37.0 10.6 61 114-174 133-195 (429)
262 4b4t_S RPN3, 26S proteasome re 81.2 43 0.0015 32.8 14.8 61 114-176 233-299 (523)
263 4gq2_M Nucleoporin NUP120; bet 80.9 9.4 0.00032 41.4 11.4 128 31-160 809-949 (950)
264 3esl_A Checkpoint serine/threo 80.0 25 0.00085 29.3 11.7 56 537-592 93-149 (202)
265 3txn_A 26S proteasome regulato 79.0 44 0.0015 31.6 21.4 164 33-205 20-208 (394)
266 3lpz_A GET4 (YOR164C homolog); 78.7 40 0.0014 30.9 20.6 107 154-271 42-159 (336)
267 4a1g_A Mitotic checkpoint seri 77.3 18 0.00061 28.6 8.9 55 540-594 82-137 (152)
268 4b4t_R RPN7, 26S proteasome re 75.3 20 0.00067 34.6 10.8 97 250-346 133-236 (429)
269 2wpv_A GET4, UPF0363 protein Y 74.8 49 0.0017 30.0 19.3 109 153-272 39-158 (312)
270 2wvi_A Mitotic checkpoint seri 72.8 24 0.00082 28.3 8.8 52 542-593 79-131 (164)
271 3esl_A Checkpoint serine/threo 71.6 28 0.00096 29.0 9.1 58 77-146 92-149 (202)
272 3lpz_A GET4 (YOR164C homolog); 70.7 64 0.0022 29.5 23.0 123 39-201 19-159 (336)
273 2wpv_A GET4, UPF0363 protein Y 69.4 66 0.0023 29.2 21.6 126 36-201 17-157 (312)
274 1qsa_A Protein (soluble lytic 64.3 1.3E+02 0.0044 30.6 32.7 138 37-193 11-151 (618)
275 1oyz_A Hypothetical protein YI 63.0 80 0.0027 27.8 22.8 67 11-78 16-82 (280)
276 3eiq_C Programmed cell death p 62.9 25 0.00086 32.6 8.0 73 491-564 220-294 (358)
277 3bu8_A Telomeric repeat-bindin 60.8 60 0.0021 27.2 8.8 56 80-141 88-143 (235)
278 4a1g_A Mitotic checkpoint seri 59.8 50 0.0017 26.1 8.1 32 114-145 103-134 (152)
279 4aez_C MAD3, mitotic spindle c 58.4 31 0.0011 29.3 7.1 54 540-593 131-185 (223)
280 4ets_A Ferric uptake regulatio 57.8 29 0.001 27.8 6.8 71 80-163 13-85 (162)
281 2nsz_A Programmed cell death p 54.9 25 0.00086 26.9 5.7 70 490-560 9-80 (129)
282 2uwj_G Type III export protein 54.4 57 0.002 23.4 8.2 80 125-208 19-98 (115)
283 2wvi_A Mitotic checkpoint seri 53.7 77 0.0026 25.4 8.4 56 81-148 77-132 (164)
284 2p58_C Putative type III secre 53.2 61 0.0021 23.3 8.9 80 125-208 20-99 (116)
285 1ya0_A SMG-7 transcript varian 52.9 86 0.0029 30.8 10.4 43 114-157 188-230 (497)
286 3ltm_A Alpha-REP4; protein eng 51.6 1E+02 0.0035 25.5 19.9 92 211-311 93-184 (211)
287 3eiq_C Programmed cell death p 50.4 1.6E+02 0.0054 27.3 11.8 65 456-521 220-286 (358)
288 2fe3_A Peroxide operon regulat 49.2 72 0.0025 24.9 7.7 50 114-163 23-72 (145)
289 2d2s_A Exocyst complex compone 48.4 1.2E+02 0.004 26.2 9.4 90 459-551 24-119 (235)
290 3ax2_A Mitochondrial import re 46.8 39 0.0013 22.6 4.7 41 68-108 21-61 (73)
291 2xig_A Ferric uptake regulatio 46.2 94 0.0032 24.4 8.0 50 114-163 28-77 (150)
292 2ion_A PDCD4, programmed cell 45.8 24 0.00081 28.0 4.3 70 490-560 11-82 (152)
293 2uwj_G Type III export protein 44.7 85 0.0029 22.6 8.5 12 225-236 51-62 (115)
294 2o03_A Probable zinc uptake re 44.4 57 0.002 24.9 6.3 49 115-163 13-61 (131)
295 2p58_C Putative type III secre 43.7 89 0.003 22.5 9.3 46 224-275 51-96 (116)
296 3eyy_A Putative iron uptake re 43.2 71 0.0024 24.9 6.8 48 115-163 21-68 (145)
297 2ijq_A Hypothetical protein; s 41.8 83 0.0028 25.1 6.8 52 122-173 42-101 (161)
298 4gq2_M Nucleoporin NUP120; bet 41.8 1.5E+02 0.005 32.2 11.0 48 215-262 899-950 (950)
299 2fu4_A Ferric uptake regulatio 40.9 71 0.0024 21.7 5.8 59 549-608 8-67 (83)
300 3mwm_A ZUR, putative metal upt 39.9 51 0.0017 25.6 5.4 49 115-163 16-64 (139)
301 2d2s_A Exocyst complex compone 39.5 1.8E+02 0.0061 25.0 9.2 20 256-275 26-45 (235)
302 2fe3_A Peroxide operon regulat 38.8 1.4E+02 0.0047 23.2 8.4 58 204-262 13-70 (145)
303 3eyy_A Putative iron uptake re 37.3 1.1E+02 0.0039 23.7 7.1 56 205-262 11-66 (145)
304 1om2_A Protein (mitochondrial 36.1 69 0.0024 22.8 4.9 41 69-109 25-65 (95)
305 1mzb_A Ferric uptake regulatio 35.6 1.5E+02 0.005 22.7 7.8 58 204-262 9-67 (136)
306 1mzb_A Ferric uptake regulatio 35.3 70 0.0024 24.6 5.5 49 115-163 20-69 (136)
307 2keb_A DNA polymerase subunit 34.7 1.2E+02 0.0042 21.6 6.8 60 541-602 27-91 (101)
308 2qx5_A Nucleoporin NIC96; mRNA 34.4 3.8E+02 0.013 27.4 11.9 213 39-274 301-564 (661)
309 1wdy_A 2-5A-dependent ribonucl 34.4 74 0.0025 27.8 6.5 19 118-136 8-26 (285)
310 2w57_A Ferric uptake regulatio 34.2 1.6E+02 0.0054 23.1 7.5 58 204-262 8-66 (150)
311 1k1a_A B-cell lymphoma 3-encod 34.1 1.6E+02 0.0054 24.8 8.4 187 394-592 12-210 (241)
312 3ygs_P Procaspase 9; apoptosis 33.6 1.3E+02 0.0044 21.4 6.8 39 161-199 51-89 (97)
313 3t8k_A Uncharacterized protein 33.3 1.8E+02 0.0062 23.6 8.2 28 395-422 42-69 (186)
314 3ltm_A Alpha-REP4; protein eng 33.1 2.1E+02 0.007 23.6 20.8 139 212-366 63-201 (211)
315 1ug3_A EIF4GI, eukaryotic prot 32.1 1.6E+02 0.0053 27.1 8.2 25 321-345 14-38 (339)
316 2ijq_A Hypothetical protein; s 32.0 1.9E+02 0.0066 23.0 8.4 60 356-416 36-103 (161)
317 2ion_A PDCD4, programmed cell 31.9 1.8E+02 0.0061 22.9 7.3 24 252-275 13-36 (152)
318 3bu8_A Telomeric repeat-bindin 31.6 73 0.0025 26.7 5.0 48 50-97 90-147 (235)
319 4ets_A Ferric uptake regulatio 31.1 1.5E+02 0.0052 23.6 7.0 57 205-262 25-83 (162)
320 3jxi_A Vanilloid receptor-rela 29.9 1E+02 0.0034 26.7 6.5 55 119-173 9-72 (260)
321 1wdy_A 2-5A-dependent ribonucl 29.6 50 0.0017 29.1 4.4 213 358-592 7-247 (285)
322 3ltj_A Alpharep-4; protein eng 29.6 2.3E+02 0.0078 23.1 19.7 45 114-162 30-74 (201)
323 2w57_A Ferric uptake regulatio 29.5 79 0.0027 24.8 5.0 49 115-163 19-68 (150)
324 3us6_A Histidine-containing ph 29.2 2.1E+02 0.0072 22.5 7.8 40 35-74 10-49 (153)
325 3ltj_A Alpharep-4; protein eng 29.1 2.3E+02 0.008 23.0 20.2 141 145-298 26-167 (201)
326 1bpo_A Protein (clathrin); cla 28.9 1.5E+02 0.0051 28.5 7.3 48 46-93 343-390 (494)
327 2nsz_A Programmed cell death p 27.0 2.1E+02 0.007 21.7 8.7 24 252-275 11-34 (129)
328 2fu4_A Ferric uptake regulatio 26.8 1.5E+02 0.0051 20.0 7.3 60 513-573 7-67 (83)
329 4b4t_O 26S proteasome regulato 26.7 4E+02 0.014 25.0 10.8 166 30-206 2-197 (393)
330 1wgl_A TOLL-interacting protei 26.5 18 0.0006 23.1 0.5 39 20-60 13-51 (59)
331 3kea_A K1L; tropism, ANK repea 26.4 2.1E+02 0.007 25.2 7.9 15 122-136 38-52 (285)
332 3jxi_A Vanilloid receptor-rela 26.3 28 0.00097 30.4 2.1 25 188-212 12-36 (260)
333 3rjo_A Endoplasmic reticulum a 25.0 4.4E+02 0.015 24.9 19.2 48 27-74 103-152 (419)
334 4g8k_A 2-5A-dependent ribonucl 24.8 3.8E+02 0.013 24.0 10.4 104 303-422 219-328 (337)
335 2b7e_A PRE-mRNA processing pro 24.8 80 0.0027 20.1 3.2 29 230-258 3-31 (59)
336 1otr_A Protein CUE2; protein-p 24.4 83 0.0028 19.1 3.1 30 27-58 15-44 (49)
337 2cwy_A Hypothetical protein TT 23.7 1.3E+02 0.0045 21.3 4.7 50 122-173 11-65 (94)
338 3kea_A K1L; tropism, ANK repea 23.6 1.8E+02 0.0063 25.6 7.0 16 362-377 167-182 (285)
339 2xig_A Ferric uptake regulatio 22.8 2.7E+02 0.0093 21.7 8.6 58 204-262 18-75 (150)
340 2r9g_A AAA ATPase, central reg 22.7 3.3E+02 0.011 22.6 10.0 55 500-555 26-85 (204)
341 1bpo_A Protein (clathrin); cla 22.7 2.6E+02 0.0087 27.0 7.6 90 108-198 357-449 (494)
342 2dhy_A CUE domain-containing p 22.5 81 0.0028 20.7 3.1 35 23-59 25-59 (67)
343 3bge_A Predicted ATPase; struc 22.4 3.3E+02 0.011 22.5 9.2 55 500-554 19-78 (201)
344 3hra_A Ankyrin repeat family p 22.0 1.9E+02 0.0064 23.5 6.4 183 119-307 9-199 (201)
345 3bqo_A Telomeric repeat-bindin 22.0 1.2E+02 0.0041 25.0 4.6 29 69-97 122-150 (211)
346 2keb_A DNA polymerase subunit 21.6 2.3E+02 0.0077 20.3 6.6 30 508-537 29-58 (101)
347 3eu9_A Huntingtin-interacting 21.2 1.4E+02 0.0047 25.1 5.6 221 154-385 13-239 (240)
348 1ixm_A SPO0B, protein (sporula 21.1 1.2E+02 0.0041 25.1 4.7 46 539-586 15-60 (192)
349 2o03_A Probable zinc uptake re 21.1 2.2E+02 0.0074 21.5 6.0 45 218-262 15-59 (131)
350 4g8k_A 2-5A-dependent ribonucl 20.5 2.9E+02 0.0098 24.9 7.9 105 269-388 220-329 (337)
351 2p1h_A APAF-1, apoptotic prote 20.5 2.3E+02 0.0077 19.8 6.2 59 132-194 25-83 (94)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-39 Score=340.33 Aligned_cols=501 Identities=10% Similarity=0.013 Sum_probs=406.6
Q ss_pred cCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
.|.+..+...+.... .++...|..++..+.+.|++++|...|++++...|++. .+..++.+|.+
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------~~~~l~~~~~~ 129 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS-LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPN---------------DAFWLAQVYCC 129 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHH---------------HHHHHHHHHHH
T ss_pred cCccCCCCCccccch-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCch---------------HHHHHHHHHHH
Confidence 444555555555443 35567788999999999999999999999998777542 67789999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC----------------c---cchHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG----------------F---CVYEFLM 185 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~---~~~~~l~ 185 (619)
.|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++.... + .+|..++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999988653 5688999999999999999999999999644433 1 2388999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNAS--SL-FDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+|.+.|++++|.++|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...++.+...+|+.++..|.+.|
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 286 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED 286 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999998875 445556666655443332222111 11 444444444455666777788899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++++|.++|+.+.+. +++..++..++..+.+.|++++|.++|+++.+.+.. +..+++.++.++.+.|++++|.++++
T Consensus 287 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 287 ELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998875 579999999999999999999999999999987644 77889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
++.+.. +.+..++..++..|.+.|++++|.++|+.+.+... .+..+|+.++..|.+.|++++|..+|+++.+.+ |
T Consensus 364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~- 438 (597)
T 2xpi_A 364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--Q- 438 (597)
T ss_dssp HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--T-
T ss_pred HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-
Confidence 998653 45788999999999999999999999999987632 367899999999999999999999999988752 2
Q ss_pred HhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047659 423 AVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQG 502 (619)
Q Consensus 423 ~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 502 (619)
.+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|
T Consensus 439 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 439 ----------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp ----------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred ----------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 266789999999999999999999999998764 557899999999999999
Q ss_pred CHHHHHHHHHHHHHC----CCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 047659 503 SLSSAILLFFQMLKR----GLTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDA 576 (619)
Q Consensus 503 ~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 576 (619)
++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 999999999999875 66787 7899999999999999999999999999864 3488999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHh
Q 047659 577 ALKLFGQLTDRGLEP-DIITYNTIICGYC 604 (619)
Q Consensus 577 A~~~~~~~~~~g~~p-~~~~~~~ll~~~~ 604 (619)
|.+.++++.+ +.| +...+..+...|.
T Consensus 569 A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 569 AITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 9999999998 456 4667766666554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-38 Score=332.22 Aligned_cols=484 Identities=10% Similarity=0.009 Sum_probs=406.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+...+..++..+.+.|++++|+.+|+.+.. .++..++..++.++.+.|++++|...|++++.. +.+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---------- 151 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSA---------- 151 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHH----------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchh----------
Confidence 445678899999999999999999999987 556688899999999999999999999998643 22222
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC---------------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG---------------IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+++.++.+|.+.|++++|+++|+++.... .+++..+|+.++.+|.+.|++++|++.|+++.
T Consensus 152 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 152 ----CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999999643221 12357899999999999999999999999999
Q ss_pred hCCccc---hHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh
Q 047659 175 GKGFCV---YEFLMNGLLRKGVIENAFH--M-HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV 248 (619)
Q Consensus 175 ~~~~~~---~~~l~~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 248 (619)
+.+|+. +..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++... +++.
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred HhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 988843 5555554443333222221 1 444454444555666777788899999999999999999765 4789
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.+|+.++.+|.+.|++++|.++|+.+.+.+.. +..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 99999999999999999999999999986543 77889999999999999999999999999764 44789999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 34688999999999999999999999999988743 37788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC
Q 047659 409 SLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMY----NI 484 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 484 (619)
.+|+.+.+. .|+ +..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 462 ~~~~~~~~~--~~~-----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 462 EYLQSSYAL--FQY-----------------------------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHHHHH--CCC-----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHh--CCC-----------------------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 999999875 232 6778999999999999999999999998765 55
Q ss_pred CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 485 KPD--VITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 485 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
.|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. +.+...+.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 588 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASD 588 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHH
Confidence 777 7899999999999999999999999999864 4588999999999999999999999999999853 22566666
Q ss_pred HHHHHH
Q 047659 563 VLLNML 568 (619)
Q Consensus 563 ~l~~~~ 568 (619)
.+...|
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-28 Score=243.07 Aligned_cols=359 Identities=16% Similarity=0.097 Sum_probs=322.8
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
+...+.+.|++++|++.++.+.. |.+...+..++.++.+.|++++|...++.++..+|.... +|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~--------------~~ 70 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE--------------AY 70 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--------------HH
Confidence 34567789999999999999887 888888999999999999999999999999999888766 89
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~ 192 (619)
..++..|.+.|++++|+..|+++++..|. ++.++..++.++.+.|++++|++.|+++.+.+|+. +..+...+...|
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc
Confidence 99999999999999999999999987654 77889999999999999999999999999999833 788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
++++|.+.++++++.. +.+..+|..+...+...|++++|...|+++...++. +...|..+...+...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999885 566889999999999999999999999999987543 67789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPN 352 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 352 (619)
........ +..++..+..++...|++++|.+.++++.+.+.. +..++..+...+.+.|++++|.+.|+++.+.. +.+
T Consensus 228 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 304 (388)
T 1w3b_A 228 RALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTH 304 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 99876432 6788999999999999999999999999987543 67889999999999999999999999998863 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 353 VISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 353 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8899999999999999999999999998763 335778999999999999999999999999875
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=8.2e-28 Score=237.20 Aligned_cols=326 Identities=17% Similarity=0.117 Sum_probs=197.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
++..+.+.|++++|...+++++..+|.+.. .+..+...+.+.|++++|...++..++..|. ++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~ 69 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTG--------------VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEA 69 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHH
Confidence 456677788888888888888887777665 6667777788888888888888887776543 6777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
|..++.++.+.|++++|++.|+++.+..|+ .+..++.++...|++++|.+.++.+++.. +.+...+..+...+...
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 888888888888888888888777766662 26666666666666666666666666653 33344455555666666
Q ss_pred CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 227 GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 227 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
|++++|.+.|+++....+. +..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++++|...+
T Consensus 149 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666554222 3455666666666666666666666666554322 3455555555555566666666665
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047659 307 LTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEP 386 (619)
Q Consensus 307 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 386 (619)
++.....+. +..++..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.+.++.+.+.. +.
T Consensus 227 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 303 (388)
T 1w3b_A 227 LRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PT 303 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cc
Confidence 555554322 44555555555555555555555555555432 2234445555555555555555555555554442 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047659 387 SLLTYSSLIDGFCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 387 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 416 (619)
+..++..+...+.+.|++++|...++++.+
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555555443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=253.81 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 047659 469 ATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKL 548 (619)
Q Consensus 469 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (619)
.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 56677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 549 MERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|++.+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888888888888888888888877644
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.1e-29 Score=247.90 Aligned_cols=206 Identities=12% Similarity=0.141 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---------HH
Q 047659 196 NAFHMHRQVIQRGFVPNI-VTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK---------LE 265 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 265 (619)
.+..+.+.+.+.+....+ ..++.+|+.|++.|++++|.++|++|.+.|+.||..+||++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455566666554443 35788889999999999999999999999999999999999998886654 68
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047659 346 NGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKS 401 (619)
Q Consensus 346 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 401 (619)
+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-23 Score=215.89 Aligned_cols=436 Identities=11% Similarity=-0.002 Sum_probs=257.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+...+..+.+.|++++|...|++++..+|+ .. ++..++.+|.+.|++++|+..|+++++.+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV--------------FYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH--------------HHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 44566677777777777777777777776653 22 6677777777777777777777777776543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
++.++..++.++...|++++|+..|+++.+.+| +. ....+..+........+.+.+..+...+..|+......-..
T Consensus 72 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 -YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 667777777777777777777777777777666 11 33333333333323333333322222111111111111111
Q ss_pred HHHhcCCcchHHHHHHHHHhCCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC----
Q 047659 222 RLCINGQIGNASSLFDVLLLVGP---------KPNVVTFSTLINAFCK---EAKLEKAFQLYNLMME-----MDLV---- 280 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~---- 280 (619)
.............+...+..... +.+...+......+.. .|++++|...|+.+.+ ....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 11111122222222111111111 1123344444444443 7788888888887776 3111
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 281 ----PDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISY 356 (619)
Q Consensus 281 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (619)
.+..++..+...+...|++++|...++.+.+.+.. ...+..+...+...|++++|...++++.+.. +.+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 12445666777777778888888888777776433 6677777777777777777777777777653 3355667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHH
Q 047659 357 SILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGD 436 (619)
Q Consensus 357 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 436 (619)
..+...+...|++++|...++.+...... +...+..+...+.+.|++++|...++.+.+. .|+
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-------------- 370 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-------------- 370 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT--------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc--------------
Confidence 77777777777777777777777765433 4456666777777777777777777776654 121
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHh---cCCHHHHH
Q 047659 437 ALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-KPD----VITHTVLIRGIAS---QGSLSSAI 508 (619)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~ 508 (619)
+...+..+...+...|++++|...++.+..... .++ ...+..+...+.. .|++++|.
T Consensus 371 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 371 ---------------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp ---------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 344566667777777777777777776654321 111 2266666777777 77777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 509 LLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 509 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..++++.+.. +.+..++..+...+...|++++|.+.++++.+.
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7777776642 334566667777777777777777777777664
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7e-24 Score=217.67 Aligned_cols=441 Identities=11% Similarity=0.039 Sum_probs=327.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+.+.|++++|+..|+++++.+ |++.++..++.++.+.|++++|+..++++.+.+| +. +..++.++..
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999865 5899999999999999999999999999999988 33 8899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++++|...|+.+.+.+ +++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999986 4555555555555544333333333332222211122222111111111111111111111
Q ss_pred HHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----c--CC------CCCHHHHHHHH
Q 047659 271 YNLMMEMDL---------VPDLIIYSILIDGLFK---AGRLKEGNELLLTALD-----R--GL------KLDVVVFSSVM 325 (619)
Q Consensus 271 ~~~m~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~ll 325 (619)
...+..... +.+...+......+.. .|++++|...++++.+ . .. +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111211111 1124445555555554 8999999999999987 3 11 22456788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLR 405 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 405 (619)
..+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+...... +...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998864 44888889999999999999999999999876433 5667888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 047659 406 DGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 485 (619)
+|...++.+.+. .|+ +...+..+...+...|++++|...++.+.... +
T Consensus 322 ~A~~~~~~~~~~--~~~-----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPE-----------------------------NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHHHHHHHT--CSS-----------------------------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHh--Chh-----------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 999999998875 232 45677888899999999999999999987753 4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHc---cCChHHHHHHHHHHHHCCCCcC
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLKRGL-TPD----VITYSAIIHGLFK---GKNISVGLHMFKLMERNGVAPD 557 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 557 (619)
.+...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|.+.++.+.+.. +.+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 4677889999999999999999999999987421 111 3378899999999 999999999999998853 336
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047659 558 IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIIT 595 (619)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 595 (619)
..++..+...+.+.|++++|.+.++++.+ +.|+...
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 77899999999999999999999999998 4566443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.6e-23 Score=216.26 Aligned_cols=434 Identities=9% Similarity=0.009 Sum_probs=264.5
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+.+.|++++|...|++++..+|.+.. ++..++.+|.+.|++++|++.|+++++.+|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV--------------FYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566666677777777777777777776666554 666667777777777777777777766554
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGF--VPNIVTCNKILK 221 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~ 221 (619)
. ++.++..++.++...|++++|+..|+ .....|+.....+..+...+....|...++.+..... .+........+.
T Consensus 91 ~-~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 91 D-HSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 3 56666667777777777777777764 4444443322223344444455666666666654310 001111122233
Q ss_pred HHHhcCCcchHHHHHHHHHhCCCCCChh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCC-------HHH
Q 047659 222 RLCINGQIGNASSLFDVLLLVGPKPNVV-TFSTLINAFC--------KEAKLEKAFQLYNLMMEMDLVPD-------LII 285 (619)
Q Consensus 222 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~m~~~~~~~~-------~~~ 285 (619)
.+....+.+.+...+..... ..+... ....+...+. ..|++++|..+|+.+.+.... + ..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~ 245 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALA 245 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHH
Confidence 33334444333333222211 111111 1222222211 124677777777777765322 2 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 286 YSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 286 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 5556666777788888888888887763 346777777777888888888888888777653 3356777778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHH
Q 047659 366 QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSV 445 (619)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~ 445 (619)
.|++++|...++.+...... +...+..+...+.+.|++++|...++.+.+. .|+
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~----------------------- 376 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT----------------------- 376 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------
Confidence 88888888888887776433 4556777778888888888888888877765 232
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-----CCCHhhHHHHHHHHHhc----------CCHHHHHHH
Q 047659 446 RMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNI-----KPDVITHTVLIRGIASQ----------GSLSSAILL 510 (619)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~ 510 (619)
+...+..+...+...|++++|...++.+.+... ......+......+... |++++|...
T Consensus 377 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 377 ------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp ------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 445667777788888888888888887654320 11112233444556666 888888888
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 511 FFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 511 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
|+++.+.. +.+...+..+..+|...|++++|.+.++++.+.
T Consensus 451 ~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 451 LTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887753 345677888888888888888888888888774
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=8.6e-23 Score=205.68 Aligned_cols=314 Identities=10% Similarity=0.014 Sum_probs=223.9
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.. ++..++.+|...|++++|+..|+++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI--------------AYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555666666666666666666666666666555444 566666666666666666666666666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-----c-hHH------------HHHHHHhcCCHHHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-----V-YEF------------LMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-~~~------------l~~~~~~~~~~~~A~~~~~ 202 (619)
.++. ++.++..++.+|.+.|++++|+..|+++.+.+|+ . +.. +...+...|++++|...++
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5433 5566666666666666666666666666666551 1 222 2445778888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
.+.+.. +.+...+..+..+|...|++++|.+.|+++....+ .+..+|..+...|...|++++|.+.|+.+...... +
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 888775 56777888888888888888888888888876533 36778888888888888999998888888765322 3
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 283 LIIYSIL------------IDGLFKAGRLKEGNELLLTALDRGLKLD----VVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 283 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
...+..+ ...+...|++++|...++++.+.... + ..++..+...+.+.|++++|...++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444 77788889999999999998876432 2 34777888888999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLI 395 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 395 (619)
.. +.+...+..+..+|...|++++|...++.+.+.... +...+..+.
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 52 346788888899999999999999999988875322 344444444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.8e-23 Score=211.07 Aligned_cols=434 Identities=11% Similarity=0.026 Sum_probs=333.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+......+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|++++..+|.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------- 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK---------- 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH----------
Confidence 45667788888999999999999999988 889999999999999999999999999999999988776
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc------cchHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------CVYEF 183 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~ 183 (619)
++..++.++...|++++|+..|+ .....+.+ ....+..+...+....|...++.+....| .+...
T Consensus 95 ----~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 165 (537)
T 3fp2_A 95 ----ALLRRASANESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165 (537)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh
Confidence 88999999999999999999997 44433322 22234455566667889999999988755 12556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh--------cCCcchHHHHHHHHHhCCCCCC------h
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIV-TCNKILKRLCI--------NGQIGNASSLFDVLLLVGPKPN------V 248 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~--------~~~~~~A~~~~~~~~~~~~~~~------~ 248 (619)
.+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++++.+..+... .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 166 SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 666677777777766555443322 22211 23333333222 2578999999999987644311 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047659 249 VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 328 (619)
.++..+...+...|++++|.+.|+.+.+. .|+..++..+...+...|++++|...++++.+.... +..++..+...+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 320 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHH
Confidence 34667778888999999999999999985 456888889999999999999999999999987644 788999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047659 329 VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGF 408 (619)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 408 (619)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998764 335678889999999999999999999999887433 5667888999999999999999
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------CChhHHHHHHHH
Q 047659 409 SLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRL----------KRATDTVKLFML 478 (619)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~ 478 (619)
..++.+.+.. |+.. ........+......+... |++++|...++.
T Consensus 399 ~~~~~a~~~~--~~~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 399 KQYDIAKRLE--EVQE-----------------------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHHHHHH--HHCS-----------------------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--Ccch-----------------------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 9999987642 1100 0011222344455667777 999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKR 517 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 517 (619)
..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 454 a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 454 ACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88764 456788999999999999999999999999975
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-22 Score=204.92 Aligned_cols=309 Identities=12% Similarity=0.036 Sum_probs=265.9
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|....
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 95 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA--------- 95 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---------
Confidence 455677888888999999999999999887 788899999999999999999999999999999887766
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH---HhHHHH------------HHHHHhcCChhHHHHHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP---DLVQRL------------MSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~ 173 (619)
++..++.+|.+.|++++|...|+++.+..+. +. ..+..+ +..+.+.|++++|+..|+++
T Consensus 96 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 96 -----ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8899999999999999999999999987544 44 555555 45589999999999999999
Q ss_pred hhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 174 RGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 174 ~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
.+..| +. +..++.++...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|+++....+. +...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 99888 33 8899999999999999999999999875 667889999999999999999999999999876433 4444
Q ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 251 FSTL------------INAFCKEAKLEKAFQLYNLMMEMDLVPD-----LIIYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 251 ~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
+..+ ...+...|++++|.+.|+.+.+.. |+ ...+..+..++.+.|++++|...++.+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5444 788999999999999999998853 44 4478888999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 314 LKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILI 360 (619)
Q Consensus 314 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 360 (619)
. .+...+..+..+|...|++++|...++++.+.. +-+...+..+.
T Consensus 326 p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 326 P-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3 378999999999999999999999999999853 22455555555
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.9e-20 Score=182.30 Aligned_cols=313 Identities=10% Similarity=0.002 Sum_probs=168.5
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|+..|+.+.. |.++.++..++.++...|++++|...+++++..+|....
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 72 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA---------- 72 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch----------
Confidence 34455556666667777777777776665 556666666777777777777777777777766665544
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY--LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNG 187 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 187 (619)
++..++..+...|++++|...|+++.+..+. .++..+..+...+... .+..+...
T Consensus 73 ----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~ 129 (359)
T 3ieg_A 73 ----ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ-------------------RLRSQALD 129 (359)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH-------------------HHHHHHHH
Confidence 5666666777777777777777777665431 1333443331110000 00111334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++....+ .+..++..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555554443 33444445555555555555555555555544322 2344455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcC
Q 047659 268 FQLYNLMMEMDLVPDLIIYS------------ILIDGLFKAGRLKEGNELLLTALDRGLKLDV----VVFSSVMDAYVGI 331 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 331 (619)
.+.|+...+.... +...+. .+...+.+.|++++|...++.+.+.... +. ..+..+...+...
T Consensus 208 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHc
Confidence 5555555443211 222211 2244455666666666666666654322 22 1233455566666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 332 GDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 332 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+.
T Consensus 286 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666542 235556666666666666666666666666654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.8e-20 Score=179.43 Aligned_cols=316 Identities=11% Similarity=0.044 Sum_probs=251.8
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+..+..++..+...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI--------------AYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456777888888888888888888888888777665 778888888888888888888888887654
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
. ++..+..++.++...|++++|+..|+++.+..| +. +..+..... ...+.
T Consensus 69 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~ 124 (359)
T 3ieg_A 69 D-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLR 124 (359)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHH
T ss_pred C-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHH
Confidence 4 677888888888888888888888888887766 32 222211110 11234
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG 297 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 297 (619)
.+...+...|++++|.+.++++....+ .+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 456788899999999999999988744 367889999999999999999999999999874 337889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 047659 298 RLKEGNELLLTALDRGLKLDVVVFS------------SVMDAYVGIGDVGRAVQTYDRMLNGGFLPNV----ISYSILIK 361 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~ 361 (619)
++++|...++...+.... +...+. .+...+...|++++|...++++.+... .+. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHH
Confidence 999999999999987543 444333 236678999999999999999988532 233 23556778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 047659 362 GLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV 424 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 424 (619)
.+...|++++|...++...+.. +.+...+..+...+.+.|++++|...++...+. .|+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 8999999999999999998873 236788999999999999999999999999886 45533
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=7.4e-20 Score=175.82 Aligned_cols=284 Identities=10% Similarity=-0.051 Sum_probs=141.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+..++..+...|++++|...|++++..+|.+.. .+..++..+...|++++|...++++.+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~~~ 84 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS--------------CLPVHIGTLVELNKANELFYLSHKLVD 84 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT--------------THHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------------hHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555444433 344444445555555555555555544
Q ss_pred CCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
..+. ++..+..++..+...| ++++|+..|+++.+..| +. +..+..++...|++++|.+.++.+.+.. +.+...+
T Consensus 85 ~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 85 LYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp HCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred hCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 4322 3444555555555555 45555555555554444 11 4445555555555555555555555443 2233444
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD--------LVPDLIIYSI 288 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~ 288 (619)
..+...+...|++++|.+.++++....+ .+...+..+...+...|++++|...++.+.+.. .+....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 4455555555555555555555554322 234455555555555555555555555554321 0222345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 289 LIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGL 363 (619)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 363 (619)
+..++...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 555555556666666666555554322 44555555555566666666666665555432 22444444444444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-19 Score=171.98 Aligned_cols=287 Identities=10% Similarity=-0.032 Sum_probs=240.3
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+++|+.+.. |.+...+..++.++...|++++|...+++++..+|.+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 91 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--------- 91 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------
Confidence 566778888888889999999999999887 778888888999999999999999999999998887766
Q ss_pred CCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc-c--hHHH
Q 047659 109 GDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC-V--YEFL 184 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~--~~~l 184 (619)
++..++..+...| ++++|...|+++.+..+. ++..+..++.++...|++++|+..++++.+..|+ . +..+
T Consensus 92 -----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 92 -----SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp -----HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred -----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7888999999999 999999999999887654 6788899999999999999999999999888872 2 7778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC--------CCChhhHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP--------KPNVVTFSTLIN 256 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~ 256 (619)
...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++..... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 889999999999999999998875 66778888899999999999999999998876421 334568888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAY-VGIGDVG 335 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~ 335 (619)
.+...|++++|.+.|+...+.... +..++..+..++...|++++|.+.++++.+.... +...+..+..++ ...|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 999999999999999998876433 6778888999999999999999999988876433 677777777777 4555543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=3e-17 Score=166.53 Aligned_cols=329 Identities=12% Similarity=0.036 Sum_probs=219.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH--
Q 047659 51 AIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-- 124 (619)
Q Consensus 51 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 124 (619)
++..++....+.++.+...++..+.. .+++++|...|+++.+. .+.+ ++..|+..|..
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~--------------a~~~Lg~~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTP--------------AEYVLGLRYMNGE 89 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH--------------HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHH--------------HHHHHHHHHHcCC
Confidence 45555555557788888888888887 88999999999998875 2233 77788888888
Q ss_pred --cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCC
Q 047659 125 --IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGV 193 (619)
Q Consensus 125 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~ 193 (619)
.+++++|...|++..+.+ ++..+..+...|.. .+++++|+.+|++..+.+. +.+..+...|.. .++
T Consensus 90 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999999888754 67788888888887 7788888888888877665 447777777776 677
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLE 265 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 265 (619)
+++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 888888888877765 56667777777766 677777777777776643 44556666666664 66777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCHHH
Q 047659 266 KAFQLYNLMMEMDLVPDLIIYSILIDGLFK----AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGI-----GDVGR 336 (619)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~ 336 (619)
+|.+.|+...+.| +...+..+...+.. .++.++|...|++..+.| +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777776643 34455555555555 566677777776666543 444555555555555 56666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQG---RLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK----SGKLRDGFS 409 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 409 (619)
|...|++..+.| +...+..+...|...| ++++|.+.|+...+.+ +...+..+...|.. .+++++|..
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666666666543 3444555555554444 4555666665555542 34444455555554 455555555
Q ss_pred HHHHHHH
Q 047659 410 LYDNMIK 416 (619)
Q Consensus 410 ~~~~~~~ 416 (619)
.|+...+
T Consensus 389 ~~~~A~~ 395 (490)
T 2xm6_A 389 WMRKAAE 395 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555444
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=2.4e-16 Score=166.86 Aligned_cols=406 Identities=11% Similarity=0.096 Sum_probs=235.1
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCC-----CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCV-----SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
...+|+.+...+..++..|.+.+|+++++.+...+ +...-..++....+. +..+...+.++.-..
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--------- 1050 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--------- 1050 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------
Confidence 45688888889999999999999999999887521 122223343333333 223333333332211
Q ss_pred HHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchH
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYE 182 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 182 (619)
....++..+...|.+++|..+|++.. . ...+...++ ...+++++|.++.+++ ..+.+|.
T Consensus 1051 -----------d~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWs 1109 (1630)
T 1xi4_A 1051 -----------DAPDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWS 1109 (1630)
T ss_pred -----------cHHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHH
Confidence 23345666667777777777777652 1 222222222 2556677777766655 1234477
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+++++...|++++|.+.|.+. .|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 7777777777777777776443 356666667777777777777777777666543 23223334666677776
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++
T Consensus 1182 rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1182 RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 666433332 1 234455556667777777777777777664 356677777777777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 343 RMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 343 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
+. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-.
T Consensus 1246 KA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH 1313 (1630)
T 1xi4_A 1246 KA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAH 1313 (1630)
T ss_pred Hh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhH
Confidence 55 25566777777777777777766655432 2244555666777777777777777776655432 111
Q ss_pred HhhH--HHHHhc-----cHHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCChhHHHHHHH-------------H
Q 047659 423 AVVC--SLLING-----LMGDALRFFFQSVRMTL----IPNLFIFNTLMDGCCRLKRATDTVKLFM-------------L 478 (619)
Q Consensus 423 ~~~~--~~ll~~-----~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------~ 478 (619)
...+ -..+.. .+.++.+.|........ .-+...|..++..|.+.|+++.|....- .
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~ 1393 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD 1393 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH
Confidence 1112 111111 44444444443332100 1155678888888999999988873322 1
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQG 502 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g 502 (619)
.... ..|+..|...+..|...+
T Consensus 1394 ~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1394 IITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred Hhcc--cccHHHHHHHHHHHHhhC
Confidence 1111 345666666666665554
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.4e-17 Score=169.01 Aligned_cols=427 Identities=13% Similarity=0.062 Sum_probs=281.2
Q ss_pred HHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHH
Q 047659 87 FDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQY 166 (619)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 166 (619)
|++.+..+|.+.+ +|..++. +.+.|++++|..+|+++++..|. +...|...+..+.+.|++++|
T Consensus 2 le~al~~~P~~~~--------------~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a 65 (530)
T 2ooe_A 2 AEKKLEENPYDLD--------------AWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKV 65 (530)
T ss_dssp HHHHHHHCTTCHH--------------HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHhhhCCCCHH--------------HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 5677777777766 7888888 47889999999999999987554 888999999999999999999
Q ss_pred HHHHHHHhhCCccc--hHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CChhhHHHHHHHHHh---------cCC
Q 047659 167 YKLCRAMRGKGFCV--YEFLMNGL-LRKGVIENAFH----MHRQVIQR-GFV-PNIVTCNKILKRLCI---------NGQ 228 (619)
Q Consensus 167 ~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~~~-~~~~~~~~ll~~~~~---------~~~ 228 (619)
..+|++++...|++ |...+... ...|+.+.|.+ +|+.++.. |.. ++...|...+..... .|+
T Consensus 66 ~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 66 EKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 99999999988844 55555433 34677777665 66666553 433 346677777776654 677
Q ss_pred cchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 229 IGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLL 307 (619)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 307 (619)
++.|..+|++.+.. +..+ ...|..........|. .+...++. .+.+++..|..++.
T Consensus 146 ~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~ 202 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHH
Confidence 88888888888762 2111 1223222211100010 00011110 01233444544444
Q ss_pred HHH------HcC---CCCC--------HHHHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 308 TAL------DRG---LKLD--------VVVFSSVMDAYVGI----GDV----GRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 308 ~~~------~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
... +.. ++|+ ...|...+...... ++. ..+..+|++.... .+.+...|..+...
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQY 281 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 321 111 2332 23454444333221 222 3666777777764 23467777777777
Q ss_pred HHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047659 363 LCQ-------QGRLV-------EACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSL 428 (619)
Q Consensus 363 ~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (619)
+.+ .|+++ +|..+++...+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~------ 353 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI------ 353 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS------
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc------
Confidence 664 67766 88888888875222335677788888888888888888888888874 332
Q ss_pred HHhccHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCHHH
Q 047659 429 LINGLMGDALRFFFQSVRMTLIPNL-FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRG-IASQGSLSS 506 (619)
Q Consensus 429 ll~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 506 (619)
+. ..|...+..+.+.|+.++|..+|+...+.. +.+...|...... +...|++++
T Consensus 354 -----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 354 -----------------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHH
T ss_pred -----------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhH
Confidence 22 366777777777888888888888887652 2222333322222 335788999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047659 507 AILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNG-VAP--DIAIYNVLLNMLIKECNLDAALKLFGQ 583 (619)
Q Consensus 507 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (619)
|..+|++.++.. +-+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+......|+.+.+..+.++
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888752 3357788888888888999999999999988753 233 245888888888888999999999888
Q ss_pred HHh
Q 047659 584 LTD 586 (619)
Q Consensus 584 ~~~ 586 (619)
+.+
T Consensus 489 ~~~ 491 (530)
T 2ooe_A 489 RFT 491 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.7e-16 Score=160.89 Aligned_cols=366 Identities=12% Similarity=0.037 Sum_probs=284.0
Q ss_pred hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHH
Q 047659 129 DESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFH 199 (619)
Q Consensus 129 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~ 199 (619)
..+...++...+.+ ++.++..+...|.. .+++++|+.+|++..+.+. +.+..+...|.. .+++++|.+
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 33456666665533 77888888888887 7888899999988887765 447788888887 888999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHH
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLY 271 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 271 (619)
++++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999888875 56677777788877 778889999998887754 56667777777776 77899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 047659 272 NLMMEMDLVPDLIIYSILIDGLFK----AGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVG----IGDVGRAVQTYDR 343 (619)
Q Consensus 272 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 343 (619)
+...+.| +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9888764 67777788888877 788999999999888765 56677777777775 7889999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHH
Q 047659 344 MLNGGFLPNVISYSILIKGLCQ----QGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKS-----GKLRDGFSLYDNM 414 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~ 414 (619)
..+.| +...+..+...+.. .+++++|...|+...+.+ +...+..+...|... +++++|...++..
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 88764 56667777777777 788999999999887653 455666677777776 7888888888877
Q ss_pred HHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHhhH
Q 047659 415 IKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLK---RATDTVKLFMLMGMYNIKPDVITH 491 (619)
Q Consensus 415 ~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 491 (619)
.+.+ +...+..+...|...| +.++|...|+...+.+ +...+
T Consensus 323 ~~~~---------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 366 (490)
T 2xm6_A 323 AEQG---------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQ 366 (490)
T ss_dssp HHTT---------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHH
T ss_pred HhcC---------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHH
Confidence 7653 3345556666666655 7788888888887763 66778
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCC
Q 047659 492 TVLIRGIAS----QGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFK----GKNISVGLHMFKLMERNGV 554 (619)
Q Consensus 492 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 554 (619)
..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+.
T Consensus 367 ~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 367 FNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888888887 789999999999988865 56677778888887 7899999999999888653
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.7e-17 Score=168.70 Aligned_cols=418 Identities=13% Similarity=0.062 Sum_probs=282.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+..+|..++.. .+.|++++|+.+|++++..+|.+.. .|..++..+.+.|++++|..+|++++.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~--------------~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGR--------------FWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7778888888884 7789999999999999998887766 788889999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHH-HhcCChhHHHH----HHHHHhhC-C--c---cchHHHHHHHHh---------cCCHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCL-VDSNSVGQYYK----LCRAMRGK-G--F---CVYEFLMNGLLR---------KGVIENAFHM 200 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-~--~---~~~~~l~~~~~~---------~~~~~~A~~~ 200 (619)
.. |++..|...+... ...|+.+.|.+ +|++++.. + + ..|...+..... .|+++.|..+
T Consensus 75 ~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 75 KV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred cC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 64 4777787777543 34577776665 66666542 2 2 126666665544 6889999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------
Q 047659 201 HRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM------ 274 (619)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------ 274 (619)
|+++++.........|..........|. ..+. .++. ...+++..|..+++.+
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 9999873111112233322221111110 0011 1110 0223445555555442
Q ss_pred HhCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----
Q 047659 275 MEMD---LVPD--------LIIYSILIDGLFKA----GRL----KEGNELLLTALDRGLKLDVVVFSSVMDAYVG----- 330 (619)
Q Consensus 275 ~~~~---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----- 330 (619)
.+.. ++|+ ...|...+...... ++. ..+..+|+++....+ .+...|..++..+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~ 289 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLL 289 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhh
Confidence 1111 2333 23455554433221 222 367778888887643 367788888877765
Q ss_pred --CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 047659 331 --IGDVG-------RAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPS--LLTYSSLIDGFC 399 (619)
Q Consensus 331 --~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 399 (619)
.|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+. .|+ ...|...+..+.
T Consensus 290 ~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 290 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFAR 367 (530)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHH
T ss_pred hhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHH
Confidence 68876 88999999886323446788888888888999999999999999886 343 247888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCChhHHHHHHHH
Q 047659 400 KSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMD-GCCRLKRATDTVKLFML 478 (619)
Q Consensus 400 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~ 478 (619)
+.|++++|..+|+...+. .|. +...|..... .+...|+.++|..+|+.
T Consensus 368 ~~~~~~~A~~~~~~Al~~--~~~-----------------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--ART-----------------------------RHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--TTC-----------------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--cCC-----------------------------chHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 899999999999998875 222 1112221111 23357899999999998
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 047659 479 MGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRG-LTPD--VITYSAIIHGLFKGKNISVGLHMFKLMERN 552 (619)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 552 (619)
..+.. +.+...|..++..+...|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 417 al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77653 3467888888888888999999999999998863 2232 447888888888889999999999888774
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.4e-19 Score=174.08 Aligned_cols=251 Identities=13% Similarity=0.047 Sum_probs=163.3
Q ss_pred HccCCchhHHH-HHHHhhc--CC----CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 43 IKTNNPTPAIQ-FFKWTHN--CV----SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 43 ~~~~~~~~A~~-~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
.-.|++++|++ .|+.+.. +. +...+..++..+.+.|++++|...|++++..+|.... ++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~ 101 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME--------------AW 101 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--------------HH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------HH
Confidence 34588999998 8887766 33 3567899999999999999999999999998887766 88
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHH--------
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFL-------- 184 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l-------- 184 (619)
..++.+|.+.|++++|+..|+++.+..+. ++.++..++.++...|++++|++.++++.+..|+. +...
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 89999999999999999999999987654 88899999999999999999999999999888822 2211
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 047659 185 -------MNGLLRKGVIENAFHMHRQVIQRGFVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLI 255 (619)
Q Consensus 185 -------~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 255 (619)
+..+...|++++|...++.+++.. +. +..++..+...+...|++++|...|+++....+ .+..++..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 222225556666666666555553 11 345555555555555555555555555554322 1344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
..+...|++++|.+.|+.+.+... .+..++..+..++.+.|++++|...++++.+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554321 2344555555555555555555555555544
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.8e-19 Score=175.79 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=198.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+...+..++..+.+.|++++|...|++++..+|.... ++..++..|.+.|++++|+..|+++++.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE--------------AWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34566999999999999999999999999999888766 8999999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHH----------HHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEF----------LMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~----------l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.+. ++.++..++.+|...|++++|+..|+++.+..| +.+.. +...+...|++++|.+.++++++..
T Consensus 129 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 207 (365)
T 4eqf_A 129 QPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207 (365)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence 654 789999999999999999999999999998877 22332 3677778888888888888888774
Q ss_pred CCC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047659 209 FVP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIY 286 (619)
Q Consensus 209 ~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 286 (619)
+. +..++..+...+...|++++|.+.|+++.+..+ .+..+|..+..+|...|++++|.+.|+.+.+... .+..++
T Consensus 208 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 284 (365)
T 4eqf_A 208 -GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSR 284 (365)
T ss_dssp -CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred -cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHH
Confidence 33 577777888888888888888888888776533 2567777888888888888888888888776532 246777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 287 SILIDGLFKAGRLKEGNELLLTALDRGLK-----------LDVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 287 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
..+..++...|++++|...++++.+.... .+..+|..+..++...|+.+.+.+...
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777788888888888888777654211 023455555555555555555554443
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=3.5e-16 Score=165.65 Aligned_cols=385 Identities=11% Similarity=0.126 Sum_probs=269.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+|+-....++.+...|.+.+|+++|++++.. |.. +.+.....+.++....+. +.....+..++...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~----------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~ 1049 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSV----------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN 1049 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCc----------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh
Confidence 566667778888999999999999999999954 321 111112666777777776 55666666665532
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
. + ...++..+...|.+++|..+|++.. .+...+..+. ..+++++|.++.+++ .+..+|..+
T Consensus 1050 ~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqL 1111 (1630)
T 1xi4_A 1050 Y----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQL 1111 (1630)
T ss_pred c----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHH
Confidence 1 1 3348888899999999999999973 1222223333 788999999998865 357889999
Q ss_pred HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047659 220 LKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRL 299 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 299 (619)
..++...|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 99999999999999999765 377788889999999999999999999888754 3433444588889999888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 300 KEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQV 379 (619)
Q Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 379 (619)
++...+. . .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 8644443 2 346667778999999999999999999885 47899999999999999999999877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047659 380 LIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTL 459 (619)
Q Consensus 380 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (619)
. +..+|..+..+|...|++..|......+.. +...+..+
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-----------------------------------~~deLeel 1286 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----------------------------------HADELEEL 1286 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----------------------------------CHHHHHHH
Confidence 3 678899999999999999888877654322 22334455
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHhHHHHHH
Q 047659 460 MDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS--QGSLSSAILLFFQMLKRGLTP------DVITYSAIIH 531 (619)
Q Consensus 460 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~ 531 (619)
+..|.+.|.+++|+.+++...... +.....|+-+...|++ .++.-++.+.|..-. +++| +...|.-+.-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 556666666666666665554332 2233344444444443 223333333333221 1122 3445566666
Q ss_pred HHHccCChHHHH
Q 047659 532 GLFKGKNISVGL 543 (619)
Q Consensus 532 ~~~~~g~~~~A~ 543 (619)
.|.+.|+++.|.
T Consensus 1364 LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1364 LYDKYEEYDNAI 1375 (1630)
T ss_pred HHHhcccHHHHH
Confidence 666666666555
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=6.5e-19 Score=171.84 Aligned_cols=261 Identities=11% Similarity=-0.010 Sum_probs=220.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+...+......+.+.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|....
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK--------- 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------
Confidence 344588889999999999999999999988 888999999999999999999999999999999887766
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH----------HHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV----------QRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..++.+|...|++++|+..|+++.+..+. +...+ ..++..+...|++++|+..|+++.+..|
T Consensus 135 -----~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 208 (365)
T 4eqf_A 135 -----ALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208 (365)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999886433 22223 3458899999999999999999999887
Q ss_pred c---c--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 179 C---V--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 179 ~---~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
+ + +..+..++...|++++|.+.++++++.. +.+..+|..+..+|...|++++|...|+++....+. +..++..
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYN 286 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHH
Confidence 4 2 8889999999999999999999999985 667889999999999999999999999999886433 5888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMDLV-----------PDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
+..+|...|++++|...|+.+.+.... .+..+|..+..++...|+.+.+..+...
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999999998764211 1357788999999999999888877654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3.3e-18 Score=167.11 Aligned_cols=306 Identities=12% Similarity=-0.045 Sum_probs=196.1
Q ss_pred HHccCChhHHHH-HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 74 LLQSDMRDVASH-VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 74 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
+...|++++|.. .|++++...|.++. .....+..++..+.+.|++++|+..|+++++..+. ++.++..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPL----------RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQY 103 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTT----------TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcc----------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 334567777776 66666654443321 01225667777777777777777777777776544 6677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++.++...|++++|++.|+++.+.+| +. +..++.++...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~------- 175 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG------- 175 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------
Confidence 77777777777777777777776666 22 6666677777777777777777776653 2222222111000
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-DLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
.. . ..+. ..+..+...+ ..|++++|...|+.+.+..... +..++..+...+...|++++|...+++
T Consensus 176 ~~-------~----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 176 AG-------G----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ----------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hh-------h----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 0 0000 0111222233 7778888888888887653221 467778888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 047659 309 ALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEP-- 386 (619)
Q Consensus 309 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 386 (619)
+.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+.......
T Consensus 243 al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 8776433 67788888888888888888888888887653 3467778888888888888888888888887653221
Q ss_pred --------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047659 387 --------SLLTYSSLIDGFCKSGKLRDGFSLYDN 413 (619)
Q Consensus 387 --------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 413 (619)
...+|..+..+|.+.|++++|..++..
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 257788888999999999998888764
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=6.3e-18 Score=162.05 Aligned_cols=262 Identities=7% Similarity=-0.037 Sum_probs=156.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+...+...+..+...|++++|...|++++..+|.... ++..++..+...|++++|...|+++.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE--------------AWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456677777788888888888888888877776555 66777778888888888888888887765
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHH--------------HH-HHHhcCCHHHHHHHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFL--------------MN-GLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l--------------~~-~~~~~~~~~~A~~~~~~~ 204 (619)
+. +..++..++.++...|++++|++.++++.+..|+. +..+ .. .+...|++++|.+.++.+
T Consensus 86 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 86 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 43 67777777888888888888888888877776621 3222 11 244555566666666665
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLI 284 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (619)
.+.. +.+...+..+...+...|++++|.+.++++....+ .+..++..+...+...|++++|.+.|+.+.+... .+..
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 241 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR 241 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 5553 33455555555566666666666666665554422 2344555555555555555555555555554321 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 047659 285 IYSILIDGLFKAGRLKEGNELLLTALDRGLKL-----------DVVVFSSVMDAYVGIGDVGRAVQTYD 342 (619)
Q Consensus 285 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 342 (619)
++..+..++...|++++|.+.++++.+..... +...+..+..++...|++++|..+++
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555555555555555554432211 23444444555555555555544443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=2.5e-18 Score=164.93 Aligned_cols=264 Identities=10% Similarity=-0.050 Sum_probs=225.9
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+++.+......+...|++++|+..|+.+.. |.+..++..++.++...|++++|...+++++..+|....
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------- 90 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-------- 90 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHH--------
Confidence 3556677888889999999999999999987 788899999999999999999999999999999887766
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH--------------HH-HHHhcCChhHHHHHHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL--------------MS-CLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~ 172 (619)
++..++..|...|++++|...++++.+..+. +...+..+ .. .+...|++++|+..+++
T Consensus 91 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 91 ------VHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 8889999999999999999999999987554 34444443 33 47788999999999999
Q ss_pred HhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh
Q 047659 173 MRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVV 249 (619)
Q Consensus 173 ~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 249 (619)
+.+..| +. +..++..+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...|+++....+ .+..
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 241 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVR 241 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 998888 33 8889999999999999999999999885 56788899999999999999999999999988643 3678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP-----------DLIIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
.+..+...+...|++++|.+.|+.+.+..... +..++..+..++...|+.++|..+++...
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 89999999999999999999999988753221 46788999999999999999999886543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.8e-16 Score=156.70 Aligned_cols=332 Identities=12% Similarity=-0.027 Sum_probs=216.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.....+..++.++...|++++|++.|+++++..+.... ....+....+|..++.+|...|++++|...++++.+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-----~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-----DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-----GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-----cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 344566788999999999999999999999875321100 000122223789999999999999999999998865
Q ss_pred CCC-------CCCHHhHHHHHHHHHh--cCChhHHHHHHHHHhhCCc-cc--hHHHHHH---HHhcCCHHHHHHHHHHHH
Q 047659 141 MGI-------YLSPDLVQRLMSCLVD--SNSVGQYYKLCRAMRGKGF-CV--YEFLMNG---LLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 141 ~~~-------~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~---~~~~~~~~~A~~~~~~~~ 205 (619)
... ...+.++..+..++.. .+++++|++.|+++++.+| ++ +..+..+ +...++.++|++.+++.+
T Consensus 123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 311 1135666666666554 4578999999999999888 33 4444444 345678889999999998
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047659 206 QRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP 281 (619)
Q Consensus 206 ~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (619)
+.. +.+..++..+...+.. .|++++|.+.+++.....+ .+...+..+...|...|++++|.+.|+...+....
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN- 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-
Confidence 875 5566666666555544 4678899999999887643 36778888999999999999999999999876433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 282 DLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIK 361 (619)
Q Consensus 282 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 361 (619)
+..++..+..+|...+... .... ..... ......+.++.|...+++..+.. +.+..++..+..
T Consensus 280 ~~~~~~~lg~~y~~~~~~~---------~~~~-~~~~~------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~ 342 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQV---------MNLR-ENGMY------GKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILAS 342 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh---------hhHH-HHHHH------HHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHH
Confidence 5666666665553221110 0000 00000 00111123567777777766542 234455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHc
Q 047659 362 GLCQQGRLVEACGLFGQVLIRRLEPSLL--TYSSLID-GFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~ 417 (619)
.+...|++++|.+.|++.......+... .+..+.. ...+.|++++|+..|.+..+.
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888888887764333221 1222222 234677888888888877764
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=6.8e-17 Score=153.45 Aligned_cols=387 Identities=13% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
-+.|++++|.++++++ . ++.+|..++.++.+.|++++|++.|.+. .+++.|..++..+...|++++|+..+.
T Consensus 14 ~~~~~ld~A~~fae~~----~--~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC----N--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC----C--ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999999999 2 3459999999999999999999999764 233458888899999999999999888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD 282 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (619)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77775 5667888899999999999999887774 367779999999999999999999999977
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKG 362 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 362 (619)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHH
Confidence 36899999999999999999999988 27889999999999999999996655442 2344445678888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHH
Q 047659 363 LCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFF 442 (619)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~ 442 (619)
|.+.|.+++|..+++...... +-....|+-+.-+|++- ++++..+.++....+ .+.. .. .+
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~---ini~-----------k~---~~ 277 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VNIP-----------KV---LR 277 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT---SCHH-----------HH---HH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH---hcCc-----------HH---HH
Confidence 999999999999999987654 33455666666666654 333333333322221 1100 00 00
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 443 QSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYN-----------IKPDVITHTVLIRGIASQGSLSSAILLF 511 (619)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 511 (619)
.. -+...|..+...|...++++.|....-.-.... -..+...|-..+..|... . ..++.-+
T Consensus 278 ~~------~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~-p~~l~~l 349 (449)
T 1b89_A 278 AA------EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-K-PLLLNDL 349 (449)
T ss_dssp HH------HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-C-GGGHHHH
T ss_pred HH------HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-C-HHHHHHH
Confidence 00 156788999999999999998876432211000 012333444444444311 1 1111111
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047659 512 FQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLF 581 (619)
Q Consensus 512 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (619)
-......+ | .+..+..+.+.|.+.-+..+++.+...+ +..+=.++-..|....|++.-....
T Consensus 350 l~~l~~~l--d---~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 350 LMVLSPRL--D---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHGGGC--C---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcc--C---cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 11111111 1 1334444556666666666665555432 4444455666666666665544433
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.2e-16 Score=156.49 Aligned_cols=363 Identities=9% Similarity=-0.077 Sum_probs=248.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
.++.+...+...|++++|++.|+.+.+ +....+|..++.++...|++++|...+++++...+.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~-- 130 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP-- 130 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc--
Confidence 456677777889999999999998754 2334567889999999999999999999998753321110
Q ss_pred HHHhhcCCCcccHHHHHHHHHHc--CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH---HhcCChhHHHHHHHHHhhCC
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRI--GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL---VDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~ 177 (619)
..+....++..++.++... +++++|+..|+++++..|. ++..+..+..++ ...++.++|++.++++++.+
T Consensus 131 ----~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 ----YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp ----SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ----cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0011122566666666654 5799999999999997665 777777766654 45678889999999999988
Q ss_pred c-cc--hHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 047659 178 F-CV--YEFLMNGLL----RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVT 250 (619)
Q Consensus 178 ~-~~--~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 250 (619)
| +. +..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 8 33 444544444 4567889999999998886 677888999999999999999999999999886443 5666
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 251 FSTLINAFCKE-------------------AKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 251 ~~~l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
+..+...|... +.++.|...|+...+.+.. +..++..+...+...|++++|.+.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 76666655432 2356777778777765332 456788888999999999999999999988
Q ss_pred cCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047659 312 RGLKLDVV--VFSSVMD-AYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL 388 (619)
Q Consensus 312 ~~~~~~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 388 (619)
....+... .+..+.. .....|++++|+..|++..+. .|+....... ...+.++++.....+ +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCH
Confidence 75443321 2233332 235788999999999998875 3443332222 233445555555543 3356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047659 389 LTYSSLIDGFCKSGKLRDGFSLYDNMIKRG 418 (619)
Q Consensus 389 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 418 (619)
.+|..+..+|...|++++|+..|++..+.+
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 788999999999999999999999988753
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=6.1e-16 Score=146.96 Aligned_cols=284 Identities=11% Similarity=0.061 Sum_probs=134.5
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+-+.|++++|.+.++++.. | + +|..|+.++.+.|++++|++.|.+. +|+.+|..+
T Consensus 13 l~~~~~ld~A~~fae~~~~--~---~--------------vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V 67 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNE--P---A--------------VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCC--h---H--------------HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHH
Confidence 3467889999999988822 1 2 8999999999999999999999653 477799999
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCcc--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGFC--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
+..+...|++++|+..++...+..++ +...++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999988887775443 38889999999999999998884 3677899999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 232 ASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 232 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
|...|..+ ..|..++.++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999977 47999999999999999999999998 2789999999999999999999655543
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC----
Q 047659 312 RGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIR-RLEP---- 386 (619)
Q Consensus 312 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---- 386 (619)
+...+.-...++..|.+.|.++++..+++...... +.....|+.+.-+|++- ++++..+-++..... +++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHH
Confidence 22345556678999999999999999999998765 55778888887777764 334333333333221 2222
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHH
Q 047659 387 --SLLTYSSLIDGFCKSGKLRDGFSLY 411 (619)
Q Consensus 387 --~~~~~~~ll~~~~~~~~~~~a~~~~ 411 (619)
+...|..+...|.+.++++.|....
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3455777888888888888877643
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=6e-17 Score=144.44 Aligned_cols=197 Identities=13% Similarity=0.009 Sum_probs=118.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|+++.++..++..+.+.|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE--------------ALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667777777777777777777777776666655 666677777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDS-----------NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
.+|. ++..+..+..++... |++++|+..|+++++.+| +. +..+..++...|++++|++.++++++
T Consensus 68 ~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 68 RTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 5544 566666677776666 666666666666666666 22 56666666666666666666666666
Q ss_pred CCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 207 RGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 207 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
.. .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...|+...
T Consensus 147 ~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 147 LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 65 55666666666666666666666666666654332 45556666666666666666666665543
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=173.24 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=129.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 047659 452 NLFIFNTLMDGCCRLKRATDTVKLFMLMGM---YNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSA 528 (619)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (619)
...+|+++|++|++.|+.++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988763 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 047659 529 IIHGLFKGKNI-SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD------IITYNTIIC 601 (619)
Q Consensus 529 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~ll~ 601 (619)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 789999999999999999999999998776653 44444444 3456665 556666777
Q ss_pred HHhhcCc
Q 047659 602 GYCSLNS 608 (619)
Q Consensus 602 ~~~~~~~ 608 (619)
-|.+.++
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7777664
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.9e-15 Score=141.02 Aligned_cols=251 Identities=10% Similarity=0.041 Sum_probs=157.2
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE 195 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~ 195 (619)
+......|++..|++.++.+...++.+.......+.++|...|+++.|+..++. .++ +. +..+...+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566788888888887765543332234556677888888888888776544 122 22 566666667777777
Q ss_pred HHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLM 274 (619)
Q Consensus 196 ~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 274 (619)
+|++.+++++..+. +.+...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777777766543 33445555566677777777777777665 245666666777777777777777777777
Q ss_pred HhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047659 275 MEMDLVPDLIIY---SILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP 351 (619)
Q Consensus 275 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (619)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++..... +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 6643 332111 122233334466777777777776653 3366667777777777777777777777766542 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 047659 352 NVISYSILIKGLCQQGRLVE-ACGLFGQVLIR 382 (619)
Q Consensus 352 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~ 382 (619)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 56666666666666666654 45666666655
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=2.7e-16 Score=140.22 Aligned_cols=194 Identities=11% Similarity=0.062 Sum_probs=163.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|+++++.+|....
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~--------- 74 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG--------- 74 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------
Confidence 566777888889999999999999999988 889999999999999999999999999999999998877
Q ss_pred CCCcccHHHHHHHHHHc-----------CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 109 GDFGCDYSFLIENYVRI-----------GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
++..++.++.+. |++++|+..|++.++..|. ++..+..+..++...|++++|+..|+++++.+
T Consensus 75 -----a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 75 -----GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp -----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 888999999999 9999999999999998665 78999999999999999999999999988766
Q ss_pred c--cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 178 F--CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 178 ~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
. ..+..+..++...|++++|...++.+++.. +.+...+..+...+...|++++|...|++..
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3 238899999999999999999999999985 6678889999999999999999999998764
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.4e-15 Score=141.45 Aligned_cols=235 Identities=11% Similarity=0.024 Sum_probs=166.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+..|+.+.. |.+..++..++.++...|++++|...+++++. .+.+...
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-------- 72 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-------- 72 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH--------
Confidence 456667777778888888888888888776 66777888888888888888888888888887 3332220
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
...+|..++..+...|++++|+..|+++.+..+. ++.++..++.+|...|++++|+..|+++.+..| +. +..+.
T Consensus 73 --~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 73 --KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 0114778888888888888888888888876554 667788888888888888888888888887777 22 55566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---cchHHHHHHHHHhCC-CCCC------hhhHHHHH
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQ---IGNASSLFDVLLLVG-PKPN------VVTFSTLI 255 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~ 255 (619)
..+...+++++|.+.++.+++.. +.+...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 34444558888888888887774 4446666677777777777 777887777766431 1122 14566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 047659 256 NAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
..|...|++++|.+.|+.+.+..
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777653
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.5e-15 Score=146.46 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=155.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC-hhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM-RDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
.+..+...+...|++++|+..|+.++. |.+..+|..++.++...|+ +++|+..|++++..+|++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~----------- 167 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----------- 167 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH-----------
Confidence 344445555667778888888887776 7777777778888877775 88888888888877777666
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~ 187 (619)
+|..++.++...|++++|+..|+++++.++. +..+|..+..++.+.|++++|+..|+++++.+| +. |..+..+
T Consensus 168 ---a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 168 ---VWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp ---HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777778888888888888776655 777777777777777888888888877777777 22 7777777
Q ss_pred HHh-cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047659 188 LLR-KGVIENA-----FHMHRQVIQRGFVPNIVTCNKILKRLCING--QIGNASSLFDVLLLVGPKPNVVTFSTLINAFC 259 (619)
Q Consensus 188 ~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 259 (619)
+.. .|..++| ++.++.++... +.+...|+.+..++...| ++++|.+.+.++ +. .+.+...+..+..+|.
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence 776 4544666 46677776664 455666777766666666 466777766666 32 2224556666666666
Q ss_pred hcC---------CHHHHHHHHHHH-Hh
Q 047659 260 KEA---------KLEKAFQLYNLM-ME 276 (619)
Q Consensus 260 ~~~---------~~~~a~~~~~~m-~~ 276 (619)
+.| .+++|.++|+.+ .+
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHH
Confidence 653 246677777776 44
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=170.71 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=110.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047659 486 PDVITHTVLIRGIASQGSLSSAILLFFQMLK---RGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYN 562 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 562 (619)
.-..|||++|++|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 047659 563 VLLNMLIKECN-LDAALKLFGQLTDRGLEPDIITYNTIICGYCS 605 (619)
Q Consensus 563 ~l~~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 605 (619)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999998 57899999999999999999999955544443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.1e-15 Score=147.42 Aligned_cols=248 Identities=10% Similarity=0.015 Sum_probs=203.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC-hhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK-IDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 139 (619)
|.+..++..++.++...|++++|+..|++++..+|.+.. +|..++.++...|+ +++|+..|++++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~--------------a~~~~g~~l~~~g~d~~eAl~~~~~al 159 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--------------VWHFRRVLLKSLQKDLHEEMNYITAII 159 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH--------------HHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 334567888999999999999999999999999998877 88999999999997 999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
+.++. +..+|..+..++...|++++|+..|+++++.+| +. |..+..++...|++++|++.++++++.. +.+...|
T Consensus 160 ~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 160 EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 98766 899999999999999999999999999999998 33 8889999999999999999999999986 6678889
Q ss_pred HHHHHHHHh-cCCcchH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 217 NKILKRLCI-NGQIGNA-----SSLFDVLLLVGPKPNVVTFSTLINAFCKEA--KLEKAFQLYNLMMEMDLVPDLIIYSI 288 (619)
Q Consensus 217 ~~ll~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (619)
+.+..++.. .|..++| ++.|++.+...+. +...|+.+...+...| ++++|++.+..+ +. .+.+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHH
Confidence 999999988 6666888 4788888876443 6778888888888877 688898888887 33 2336777888
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 047659 289 LIDGLFKAG---------RLKEGNELLLTA-LDRGLKLDVVVFSSVMDAY 328 (619)
Q Consensus 289 ll~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~ 328 (619)
+..++.+.| ..++|.++++.+ .+.+. .....|..+...+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 888888764 257888888888 55432 2445555554443
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.5e-14 Score=134.89 Aligned_cols=253 Identities=13% Similarity=0.072 Sum_probs=208.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCccc----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGFCV----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++-....|++..|+..++.....+|+. ...+.+++...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344557899999999999888877732 56788999999999999986654 2 366778888899999999999
Q ss_pred chHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKP-NVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLT 308 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 308 (619)
++|.+.++++...+..| +...+..+..++...|++++|++.++. +.+...+..+...+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776445 456677777999999999999999987 45788999999999999999999999999
Q ss_pred HHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 309 ALDRGLKLDVVV---FSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 309 ~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++......
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99875 33221 123445555679999999999999987 4568889999999999999999999999999887433
Q ss_pred CCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCC
Q 047659 386 PSLLTYSSLIDGFCKSGKLRD-GFSLYDNMIKRGLKPD 422 (619)
Q Consensus 386 ~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~ 422 (619)
+..++..++..+...|+.++ +..+++++.+. .|+
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~ 267 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRS 267 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCC
Confidence 67788889999999999876 57888888876 454
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=8.2e-15 Score=146.11 Aligned_cols=314 Identities=13% Similarity=0.019 Sum_probs=176.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh---hhHHHHHHHHHhCCCC
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI---DESVEIFAYMSDMGIY 144 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~ 144 (619)
..++..+.+.|++++|...|+++.+.+ +.+ ++..|+..|...|++ ++|...|++..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~~--------------A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YSE--------------AQVGLADIQVGTRDPAQIKQAEATYRAAADT--- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCT--------------GGGTCC----------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CHH--------------HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---
Confidence 346777888888999999988887652 222 566777777778888 8898888888753
Q ss_pred CCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCc-cchHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhh
Q 047659 145 LSPDLVQRLMSCLVDSN-----SVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKGVIE---NAFHMHRQVIQRGFVPNIVT 215 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~ 215 (619)
++..+..+..++...+ ++++|+.+|++..+.++ +.+..+...|...+..+ .+.+.+......| +...
T Consensus 68 -~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 68 -SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEA 143 (452)
T ss_dssp ----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTH
T ss_pred -CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHH
Confidence 6677777777555554 66788888888887766 55777777777655433 3444444444444 4555
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 216 CNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA---KLEKAFQLYNLMMEMDLVPDLIIYSILIDG 292 (619)
Q Consensus 216 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 292 (619)
+..+...|...+.++++......+.+.....++..+..+...|...| +.++|++.|+...+.|.. +...+..+...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~ 222 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 66666777776766555554333332222334446677777777777 777777777777776533 44444555555
Q ss_pred HHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047659 293 LFKA----GRLKEGNELLLTALDRGLKLDVVVFSSVMDA-Y--VGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQ 365 (619)
Q Consensus 293 ~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 365 (619)
|... ++.++|.+.|+... .| ++..+..+... + ...+++++|.+.|++..+.| +...+..+...|.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 5443 57777777777766 32 44455555554 3 35667777777777777654 5555555655555
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 047659 366 QG-----RLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCK----SGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 366 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 417 (619)
.| ++++|...|+... . .+...+..+...|.. ..++++|...|....+.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 33 6677777766665 2 234444445444443 22555555555555443
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-15 Score=138.26 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=137.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+ .+.. ++..++.+|...|++++|+..++++.+..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDIT--------------YLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHH--------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 455667777777777777777777777765 3333 6677777777777777777777777654332
Q ss_pred C--C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 145 L--S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 145 ~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
. + +.++..++.++...|++++|+..|+++.+..++ ...+...|++++|.+.++.+.... +.+...+..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 144 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARL 144 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHH
Confidence 1 1 456666777777777777777777776665543 123444555666666666666553 334455555
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGR 298 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 298 (619)
+...+...|++++|...++++....+. +...+..+...+...|++++|.+.|+...+... .+..++..+..++...|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666554322 455556666666666666666666666655422 245555556666666666
Q ss_pred HHHHHHHHHHHHHc
Q 047659 299 LKEGNELLLTALDR 312 (619)
Q Consensus 299 ~~~a~~~~~~~~~~ 312 (619)
+++|...++...+.
T Consensus 223 ~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 223 YASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=9e-15 Score=145.80 Aligned_cols=348 Identities=11% Similarity=0.003 Sum_probs=214.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCccchHHHHHHHHhcC
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV---GQYYKLCRAMRGKGFCVYEFLMNGLLRKG 192 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 192 (619)
..++..+.+.|++++|.+.|++..+.+ ++.++..+..+|...|++ ++|+.+|++..+..++.+..+...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 457788899999999999999998764 556777788888888888 89999999988774466777777666555
Q ss_pred -----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc---hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 047659 193 -----VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG---NASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKL 264 (619)
Q Consensus 193 -----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 264 (619)
++++|...+++..+.| +...+..+...|...+..+ ++.+.+......| +...+..+...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 7889999999999987 2336777777777765544 4445555544432 455677777788777755
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHH
Q 047659 265 EKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAG---RLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGI----GDVGRA 337 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a 337 (619)
+++......+.+.-...++..+..+...|...| +.++|.+.|+...+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 544444332222111123337777888888888 888999999998888744 555556666666554 688889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHH
Q 047659 338 VQTYDRMLNGGFLPNVISYSILIKG-L--CQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSG-----KLRDGFS 409 (619)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~ 409 (619)
.+.|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99888887 33 45555556555 3 45788888888888888765 4555666666665 44 6777777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCC
Q 047659 410 LYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCR----LKRATDTVKLFMLMGMYNIK 485 (619)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 485 (619)
.|+... .| +......|...|.. ..+.++|...|+...+.|
T Consensus 309 ~~~~Aa-~g---------------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-- 352 (452)
T 3e4b_A 309 HFEKAV-GR---------------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-- 352 (452)
T ss_dssp HHHTTT-TT---------------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--
T ss_pred HHHHHh-CC---------------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--
Confidence 776654 21 34445555555554 337777777777776655
Q ss_pred CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 486 PDVITHTVLIRGIAS----QGSLSSAILLFFQMLKRG 518 (619)
Q Consensus 486 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 518 (619)
+......+...|.. ..++.+|..+|+...+.|
T Consensus 353 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 353 -QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp -CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 23344455555543 346777777777777665
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4e-15 Score=137.01 Aligned_cols=228 Identities=11% Similarity=0.029 Sum_probs=195.1
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
++.+..+...+...|++++|+..|+.+.. ..++.++..++.++...|++++|...+++++...|...... +.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~ 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-------KV 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-------HH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-------HH
Confidence 45677788888999999999999999887 66778899999999999999999999999999776541000 00
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNG 187 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~ 187 (619)
...++..++..|...|++++|+..|+++.+..+ +. ..+.+.|++++|...++++....| + .+..+...
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 012889999999999999999999999998543 43 456677889999999999999988 2 38899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
+...|++++|.+.++.+++.. +.+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999986 667888999999999999999999999999886433 678899999999999999999
Q ss_pred HHHHHHHHhC
Q 047659 268 FQLYNLMMEM 277 (619)
Q Consensus 268 ~~~~~~m~~~ 277 (619)
.+.|+...+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=7.9e-15 Score=136.27 Aligned_cols=235 Identities=11% Similarity=0.004 Sum_probs=172.0
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+...+..+...|++++|...|++++..+|.... ++..++..|...|++++|+..++++.+..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 67 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------------IYNRRAVCYYELAKYDLAQKDIETYFSKV 67 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------------THHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 4567788899999999999999999999998877665 88889999999999999999999998843
Q ss_pred CCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 143 IYL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 143 ~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..+ ...++..++.++...|++++|++.|+++.+..| + .+..+..++...|++++|.+.++++++.. +.+...+.
T Consensus 68 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~ 146 (272)
T 3u4t_A 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFY 146 (272)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHH
Confidence 222 234588889999999999999999999888777 2 28888888888888888888888887763 55566666
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHH
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK---LEKAFQLYNLMMEMD-LVPD------LIIYS 287 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~ 287 (619)
.+...+...+++++|.+.|+++.+..+. +...+..+...+...|+ +++|...|+.+.+.. -.|+ ..+|.
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 6662333455888888888887775332 45666667777776676 666777777665431 1122 14556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 288 ILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 288 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
.+...+...|++++|.+.++++.+..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66666677777777777777776654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=1.8e-15 Score=137.89 Aligned_cols=200 Identities=12% Similarity=0.016 Sum_probs=129.1
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF 104 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (619)
.+.+++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 92 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----- 92 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----
Confidence 3555666777777777888888888888888776 666777778888888888888888888888887766554
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--h
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--Y 181 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~ 181 (619)
++..++..+...|++++|...++++.+..+. ++..+..++..+...|++++|+..++++.+..+ +. +
T Consensus 93 ---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 93 ---------AYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 6777788888888888888888888776543 677777777888888888888888877776665 22 6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 182 EFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666777777777777777766654 445556666666677777777777777766654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=9.8e-16 Score=142.69 Aligned_cols=242 Identities=11% Similarity=-0.056 Sum_probs=159.2
Q ss_pred ccCCchhHHHHHHHhhc------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH
Q 047659 44 KTNNPTPAIQFFKWTHN------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF 117 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (619)
..|++++|+..|+.+.. +.++.++..++.++...|++++|...|++++..+|.... ++..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~ 82 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE--------------VFNY 82 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH--------------HHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH--------------HHHH
Confidence 45778888888887775 224566677888888888888888888888887776655 7778
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHH
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIE 195 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~ 195 (619)
++..|...|++++|+..|+++++..+. ++.++..++.+|.+.|++++|+..|+++.+..| +. .......+...|+++
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 161 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHH
Confidence 888888888888888888888876544 667788888888888888888888888877777 22 333444445667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 196 NAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP---NVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+|...+....... +++...+. ++..+...++.++|...++......+.. +...+..+...+...|++++|...|+
T Consensus 162 ~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 162 QAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777766653 33433333 5555666666677777777665432110 13556666667777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 273 LMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
.+.... |+. +.....++...|++++|.+.+
T Consensus 240 ~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 776643 221 122233444555555555444
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=5.1e-14 Score=129.06 Aligned_cols=197 Identities=11% Similarity=-0.051 Sum_probs=122.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+..+..++..+...|++++|...|++++...|.... ++..++..|...|++++|.+.|+++.+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD--------------AHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345566666777777777777777777766655544 666677777777777777777777766543
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh--CCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG--KGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
. +...+..++..+...|++++|++.++++.+ ..+ + .+..++.++...|++++|.+.++.+.+.. +.+...+..
T Consensus 103 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 180 (252)
T 2ho1_A 103 R-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALE 180 (252)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 3 566666677777777777777777777666 333 1 15555666666666666666666666553 334555566
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+...+...|++++|...++.+....+ .+...+..+...+...|++++|.+.++.+.+.
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666666655422 24445555556666666666666666666553
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=3.2e-14 Score=130.47 Aligned_cols=197 Identities=11% Similarity=-0.069 Sum_probs=174.4
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|++.|+.+.. |.+..++..++.++...|++++|...+++++..+|....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------- 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------- 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH----------
Confidence 34566777778899999999999999887 778889999999999999999999999999998887665
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
++..++..|...|++++|+..|+++.+.+..| +...+..++.++...|++++|+..++++.+..| +. +..++
T Consensus 107 ----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 107 ----VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 88899999999999999999999998822223 567888999999999999999999999998887 33 88899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~ 243 (619)
.++...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999875 5677788889999999999999999999998863
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.8e-13 Score=127.00 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=129.1
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH----cCChhhHHHHHHH
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR----IGKIDESVEIFAY 137 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 137 (619)
.++.++..++..+...|++++|...|++++. +.+.. ++..++..|.. .|++++|+..|++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~--------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS--------------GCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH--------------HHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH--------------HHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 4455566666666666666666666666665 22222 55566666666 6666666666666
Q ss_pred HHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 138 MSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 208 (619)
..+.+ ++.++..+...|.. .+++++|+..|++..+.+. ..+..+...+.. .+++++|.+.+++..+.+
T Consensus 68 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 68 ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 66543 55666666666666 6666666666666655543 335555555555 666666666666666554
Q ss_pred CCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 047659 209 FVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCK----EAKLEKAFQLYNLMMEMDLV 280 (619)
Q Consensus 209 ~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~ 280 (619)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 216 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-- 216 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence 34445555555555 556666666666655432 33445555555555 566666666666555542
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047659 281 PDLIIYSILIDGLFK----AGRLKEGNELLLTALDRG 313 (619)
Q Consensus 281 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 313 (619)
+...+..+...+.. .+++++|.+.+++..+.+
T Consensus 217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 24444555555555 555566666665555543
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=4.8e-14 Score=126.69 Aligned_cols=198 Identities=11% Similarity=-0.032 Sum_probs=115.4
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+..++..+...|++++|...+++++..+|.... ++..++..|...|++++|...++++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL--------------AWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH--------------HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 3445556666666666666666666666666555444 56666666666666666666666666654
Q ss_pred CCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHhh--CCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047659 143 IYLSPDLVQRLMSCLVDS-NSVGQYYKLCRAMRG--KGF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
+. +..++..++.++... |++++|+..++++.+ ..+ ..+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 73 ~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 150 (225)
T 2vq2_A 73 PD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAF 150 (225)
T ss_dssp TT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred CC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHH
Confidence 33 555666666666666 666666666666665 222 115555555556666666666666655543 3345555
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
..+...+...|++++|...++.+....+..+...+..+...+...|+.+.+..+++.+.+
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555666666666666666555443212444455555555555666666555555543
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=1.1e-11 Score=127.57 Aligned_cols=471 Identities=12% Similarity=0.011 Sum_probs=296.7
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
....++-...|++.+..+|.+.+ .|..++..+.+.+.++.|..+|++++..-| .....|..-+..
T Consensus 45 ~~~~~d~i~~lE~~l~~np~d~~--------------~W~~yi~~~~~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 45 VRDESDVIGKLNDMIEEQPTDIF--------------LYVKLLKHHVSLKQWKQVYETFDKLHDRFP-LMANIWCMRLSL 109 (679)
T ss_dssp -CCCSCHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCcCCHH--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 34566677788999999888877 899999999999999999999999998744 478889988888
Q ss_pred HHhcCC---hhHHHHHHHHHhhCC---ccc--hHHHHHHHHhcCCH--------HHHHHHHHHHHHC-CC-CC-ChhhHH
Q 047659 157 LVDSNS---VGQYYKLCRAMRGKG---FCV--YEFLMNGLLRKGVI--------ENAFHMHRQVIQR-GF-VP-NIVTCN 217 (619)
Q Consensus 157 ~~~~~~---~~~A~~~~~~~~~~~---~~~--~~~l~~~~~~~~~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~ 217 (619)
..+.+. ++.+..+|++.+... +++ |..-+....+.++. +...++|+.++.. |. .+ +...|.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 888888 999999999999887 543 55555555444443 3344677776654 54 33 356787
Q ss_pred HHHHHHHh---------cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047659 218 KILKRLCI---------NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSI 288 (619)
Q Consensus 218 ~ll~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (619)
..+..... .++.+.+..+|+.++......-..+|.....--...+. ..+.+++.+.
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-------------- 254 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-------------- 254 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH--------------
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh--------------
Confidence 77765542 23466788888888752111112222221111100000 0111111110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHcCC-------CHHH
Q 047659 289 LIDGLFKAGRLKEGNELLLTALDR--GL----K-----------L-----D---VVVFSSVMDAYVGIG-------DVGR 336 (619)
Q Consensus 289 ll~~~~~~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~ 336 (619)
..+++.|...+.++... ++ + | + ...|...+..--..+ ..+.
T Consensus 255 -------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~R 327 (679)
T 4e6h_A 255 -------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKAR 327 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHH
Confidence 11222233333322110 11 0 0 0 133444444333322 1234
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047659 337 AVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEAC-GLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMI 415 (619)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 415 (619)
+..+|++.... ++-....|-..+..+...|+.++|. ++++..... .+.+...|-..+....+.|+++.|..+|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56677777764 3457788888888888888888886 999998865 33455567777888888999999999998887
Q ss_pred HcCC---------CCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 047659 416 KRGL---------KPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKP 486 (619)
Q Consensus 416 ~~~~---------~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 486 (619)
.... .|+.. ... ..... ....+|...+....+.|+.+.|..+|....+.....
T Consensus 406 ~~l~~~~~~~~~~~p~~~-----------~~~---~~~~~----~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNE-----------SAI---NQLKS----KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHHHHHHHHHHHSTTCH-----------HHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHhhhhhhccCcch-----------hhh---hhhcc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 6310 01100 000 00000 022357777777778889999999999887651122
Q ss_pred CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCc--CHHHHHH
Q 047659 487 DVITHTVLIRGIASQ-GSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAP--DIAIYNV 563 (619)
Q Consensus 487 ~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 563 (619)
....|...+..-.+. ++.+.|..+|+..++. ++-+...|...++.....|+.+.|..+|++.......+ ....|..
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 233343333333333 4589999999998885 34466667788888888899999999999998863321 3458888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 047659 564 LLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLN 607 (619)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 607 (619)
++..-.+.|+.+.+..+.+++.+ ..|+......++.-|.-.+
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCBTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcCCc
Confidence 88888999999999999999997 3566666666776665433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.1e-13 Score=128.49 Aligned_cols=223 Identities=9% Similarity=-0.015 Sum_probs=198.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc----cCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ----SDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+++.+..+...+...|++++|++.|+.+..+.++.++..++.++.. .|++++|...|+++...+ ...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~------- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN------- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH-------
Confidence 4566777888889999999999999999988888999999999999 999999999999999864 333
Q ss_pred hcCCCcccHHHHHHHHHH----cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc
Q 047659 107 SLGDFGCDYSFLIENYVR----IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 178 (619)
++..++..|.. .+++++|+..|++..+.+ ++.++..+...|.. .+++++|++.|++..+.++
T Consensus 76 -------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 145 (273)
T 1ouv_A 76 -------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND 145 (273)
T ss_dssp -------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc
Confidence 78899999999 999999999999999864 78899999999999 9999999999999999886
Q ss_pred -cchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChh
Q 047659 179 -CVYEFLMNGLLR----KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVV 249 (619)
Q Consensus 179 -~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~ 249 (619)
..+..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.++ ..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HH
Confidence 458888888988 999999999999999885 56778888999999 9999999999999988643 66
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 047659 250 TFSTLINAFCK----EAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 250 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 278 (619)
.+..+...|.. .+++++|.+.|+...+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 78888889988 999999999999998865
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=9e-15 Score=133.28 Aligned_cols=200 Identities=11% Similarity=0.070 Sum_probs=131.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
...+..+..++..+...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI--------------PYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788888888888888888888887776655 777888888888888888888888887
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
..+. +...+..++.++...|++++|++.++++.+..+ +. +..++.++...|++++|.+.++++.+.. +.+...+.
T Consensus 86 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 86 LDSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 6543 677788888888888888888888888877766 22 6677777777777877777777777664 44566677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.+...+...|++++|...++.+....+ .+..++..+..++...|++++|.+.|+.+.+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777777777777777777766533 24556666777777777777777777776664
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=6.4e-15 Score=137.13 Aligned_cols=225 Identities=10% Similarity=-0.060 Sum_probs=151.3
Q ss_pred HHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
.+...|++++|...|++++...+.+.. ....++..++..+...|++++|+..|+++.+.++. ++.++..
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 82 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDD----------ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNY 82 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCc----------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 334568888999999988876332110 01117888888888999999999999988887554 7888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
++.++...|++++|+..|+++.+..| +. +..++.++...|++++|...++.+.+.. |+.......+..+...|++
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCH
Confidence 88888888888888888888888776 23 7777888888888888888888887763 3333334444455566777
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVP---DLIIYSILIDGLFKAGRLKEGNELL 306 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 306 (619)
++|...++......+ ++...+ .++..+...++.++|.+.++......... +..++..+...+...|++++|...+
T Consensus 161 ~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788877776665422 233333 35556666677777777777665432110 1345555555566666666666666
Q ss_pred HHHHHc
Q 047659 307 LTALDR 312 (619)
Q Consensus 307 ~~~~~~ 312 (619)
+++.+.
T Consensus 239 ~~al~~ 244 (275)
T 1xnf_A 239 KLAVAN 244 (275)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666554
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=6.9e-14 Score=125.64 Aligned_cols=198 Identities=10% Similarity=-0.091 Sum_probs=174.1
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
++.....+...+...|++++|++.|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------- 77 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE--------- 77 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------
Confidence 455667778888999999999999999887 777889999999999999999999999999998887665
Q ss_pred CCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHH
Q 047659 109 GDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEF 183 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~ 183 (619)
++..++..+... |++++|...++++.+.+..| +...+..++.++...|++++|+..++++.+..| +. +..
T Consensus 78 -----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 78 -----INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp -----HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 788999999999 99999999999999832223 367889999999999999999999999998888 33 888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
++.++...|++++|.+.++.+.+.....+...+..+...+...|+.+.|...++.+...
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999998752167778888888889999999999999998764
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=3.2e-11 Score=124.07 Aligned_cols=432 Identities=10% Similarity=0.002 Sum_probs=225.7
Q ss_pred CchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 47 NPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 47 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
...+.+..|+.... |.+...|..++..+.+.+.++.++.+|++++..+|.... .|...+..-.+
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~--------------lW~~Yi~~E~~ 112 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN--------------IWCMRLSLEFD 112 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHh
Confidence 44555656665555 899999999999999999999999999999999888776 78888888888
Q ss_pred cCC---hhhHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHhh---C-Ccc---chHHHH
Q 047659 125 IGK---IDESVEIFAYMSDMGI-YLSPDLVQRLMSCLVDSNSV--------GQYYKLCRAMRG---K-GFC---VYEFLM 185 (619)
Q Consensus 125 ~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~---~-~~~---~~~~l~ 185 (619)
.|+ ++.+.++|++.+...+ .|++..|..-+....+.++. +...++|+.++. . +++ .|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 888 9999999999998642 36888998888766665543 334577877654 2 332 155555
Q ss_pred HHHH---------hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 047659 186 NGLL---------RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLIN 256 (619)
Q Consensus 186 ~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 256 (619)
.... ..++++.+..+|..++......-..+|......-...+ ...+.+++.+..
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------------- 255 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------------- 255 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH----------------
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh----------------
Confidence 4433 23457889999999986422222334433222111111 111222221110
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CC----C-----------C-----C---HHHHHHHHHHHHhcC-------CHHHHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMMEM--DL----V-----------P-----D---LIIYSILIDGLFKAG-------RLKEGNE 304 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~ 304 (619)
.+++.|...+.++... ++ + | + ...|...+..--..+ ..+.+..
T Consensus 256 -----~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~ 330 (679)
T 4e6h_A 256 -----AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTY 330 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence 0111112222111100 00 0 0 0 122333332222211 1223344
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 305 LLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAV-QTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRR 383 (619)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (619)
+|+++.... +.+...|...+..+...|+.++|. ++|++.... .+.+...|-..+...-+.|+++.|.++|+.+....
T Consensus 331 ~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 331 VYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 555555442 225555555555555556655564 666665543 23344445555555555666666666666655421
Q ss_pred ---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHhhHHHHHh----ccHHH
Q 047659 384 ---------LEPS------------LLTYSSLIDGFCKSGKLRDGFSLYDNMIKR-G-LKPDAVVCSLLIN----GLMGD 436 (619)
Q Consensus 384 ---------~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~----~~~~~ 436 (619)
..|+ ...|...++...+.|..+.|..+|....+. . ..+......+.+. ...+.
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence 0121 224555566666666667777777666654 1 1111111111110 01233
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 437 ALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKP--DVITHTVLIRGIASQGSLSSAILLFFQM 514 (619)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 514 (619)
|..+|+...+.. +.+...+...+......|+.+.|..+|+........+ ....|...+..-...|+.+.+..+.+++
T Consensus 489 Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 489 ACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333221 1133344444554555556666666666555442111 2234555555555556666666666665
Q ss_pred HHC
Q 047659 515 LKR 517 (619)
Q Consensus 515 ~~~ 517 (619)
.+.
T Consensus 568 ~~~ 570 (679)
T 4e6h_A 568 FEK 570 (679)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=2e-13 Score=129.02 Aligned_cols=213 Identities=10% Similarity=0.026 Sum_probs=168.8
Q ss_pred hhHHHHHHHhhc--CCCCccHHHHHHHHHc-------cCCh-------hHHHHHHHHHHH-hcCCchhHHHHHHhhcCCC
Q 047659 49 TPAIQFFKWTHN--CVSSPNIAQLIHVLLQ-------SDMR-------DVASHVFDKMVI-QFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 49 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 111 (619)
+.|+..|+.+.. |.++..|..++..+.. .|++ ++|+..|++++. ..|....
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~------------ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------ 100 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH------------
Confidence 578899999888 9999999999988864 5886 999999999999 5776655
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCccc---hHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD-LVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV---YEFLMNG 187 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~ 187 (619)
+|..++..+.+.|++++|..+|+++++..+. ++. +|..++..+.+.|++++|+.+|+++++..|+. |...+..
T Consensus 101 --~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 --LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 8899999999999999999999999986544 454 89999999999999999999999999887733 3333222
Q ss_pred HH-hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCC
Q 047659 188 LL-RKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-PKP--NVVTFSTLINAFCKEAK 263 (619)
Q Consensus 188 ~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~ 263 (619)
.. ..|+++.|.++|+.+++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 22 2688888888888887764 4567778888888888888888888888887752 233 35567777777777888
Q ss_pred HHHHHHHHHHHHhC
Q 047659 264 LEKAFQLYNLMMEM 277 (619)
Q Consensus 264 ~~~a~~~~~~m~~~ 277 (619)
.+.|..+++.+.+.
T Consensus 257 ~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 257 LASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.6e-12 Score=122.87 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHH-------HcCCh-------hhHHHHHHHHHh-CCCCC
Q 047659 81 DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYV-------RIGKI-------DESVEIFAYMSD-MGIYL 145 (619)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~ 145 (619)
++|...|++++..+|.+++ +|..++..+. +.|++ ++|..+|++.++ ..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~--------------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD--------------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-
T ss_pred HHHHHHHHHHHHHcCCCHH--------------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-
Confidence 7889999999999998887 7788887776 35886 899999999998 4544
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C-VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+...|..++..+.+.|++++|..+|+++++..| + +|..++..+.+.|++++|..+|+++++.. +.+...|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 778999999999999999999999999998877 2 37778888888888999999998888775 344555544333
Q ss_pred HHH-hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcC
Q 047659 222 RLC-INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMD-LVP--DLIIYSILIDGLFKAG 297 (619)
Q Consensus 222 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~~ 297 (619)
... ..|++++|.++|+...+..+. +...|..++..+.+.|++++|..+|+...... +.| ....|..++....+.|
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 322 258888888888888765332 56777888888888888888888888888752 344 3567777777777888
Q ss_pred CHHHHHHHHHHHHHcC
Q 047659 298 RLKEGNELLLTALDRG 313 (619)
Q Consensus 298 ~~~~a~~~~~~~~~~~ 313 (619)
+.+.|..+++.+.+..
T Consensus 256 ~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 256 DLASILKVEKRRFTAF 271 (308)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 8888888888877653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=1.4e-13 Score=119.15 Aligned_cols=163 Identities=13% Similarity=-0.011 Sum_probs=93.5
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..|..++.++.+.|++++|+..|+++++.+|.+.. ++..++.+|.+.|++++|+..++.+....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE--------------TLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3445556666666666666666666666666655554 55566666666666666666666665544
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKI 219 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 219 (619)
+. ++..+..+...+...++++.|...+.++.+..| +. +..+..++...|++++|++.++++++.. +.+..++..+
T Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l 147 (184)
T 3vtx_A 70 TT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSI 147 (184)
T ss_dssp CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHH
Confidence 33 455555555666666666666666666555555 11 5555555555555555555555555543 3444555555
Q ss_pred HHHHHhcCCcchHHHHHHHHHh
Q 047659 220 LKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~~ 241 (619)
..+|.+.|++++|.+.|++.++
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555555555555555554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=5e-14 Score=139.62 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=123.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC----ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS----PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+......+...|++++|+..|+.+.. +.++ ..+..++.++...|++++|...+++++.......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 445566677889999999999998887 4443 46778889999999999999999998875211000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC-----CCCHHhHHHHHHHHHhcCC-----------------hhH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI-----YLSPDLVQRLMSCLVDSNS-----------------VGQ 165 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~ 165 (619)
.+....++..++..|...|++++|...++++.+... .....++..+..+|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 000111788888999999999999999988865411 1134467778888888888 777
Q ss_pred HHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCcch
Q 047659 166 YYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PN----IVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 166 A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~ 231 (619)
|++.+++..+... ..+..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 7777766543211 11445555555555555555555555443100 00 1133444444444444444
Q ss_pred HHHHHHHHH
Q 047659 232 ASSLFDVLL 240 (619)
Q Consensus 232 A~~~~~~~~ 240 (619)
|...+++..
T Consensus 282 A~~~~~~al 290 (411)
T 4a1s_A 282 AAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=5.9e-14 Score=140.81 Aligned_cols=208 Identities=13% Similarity=-0.026 Sum_probs=165.5
Q ss_pred chhHHHHHHHhhc--CCCCccHHHHHHHHHccCCh-hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH
Q 047659 48 PTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMR-DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR 124 (619)
Q Consensus 48 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (619)
+++|+..++.... +.+...+..++.++...|++ ++|+..|+++++.+|...+ +|..++.+|.+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~ 149 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE--------------AWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH--------------HHHHHHHHHHH
Confidence 4556666666555 66778888999999999999 9999999999998887766 78899999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhc-
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS---------NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRK- 191 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~- 191 (619)
.|++++|++.|+++++.. |+...+..+..+|... |++++|+..|+++++..| +. +..+..++...
T Consensus 150 ~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998865 4568888899999888 888999999998888877 23 77788888777
Q ss_pred -------CCHHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 047659 192 -------GVIENAFHMHRQVIQRGFV---PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE 261 (619)
Q Consensus 192 -------~~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 261 (619)
|++++|++.++++++.. + .+...|..+..+|...|++++|.+.|++..+..+. +...+..+..++...
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFL 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 88888888888888764 3 46777888888888888888888888887775433 456677777777777
Q ss_pred CCHHHHHHHHHH
Q 047659 262 AKLEKAFQLYNL 273 (619)
Q Consensus 262 ~~~~~a~~~~~~ 273 (619)
|++++|.+.+..
T Consensus 306 g~~~eAi~~~~~ 317 (474)
T 4abn_A 306 SRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 777777765543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=1.4e-13 Score=136.39 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=165.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC---
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--- 141 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 141 (619)
..+..++..+...|++++|...|++++...|.+.... ..++..++..|...|++++|+..|+++++.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL----------SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999888765310 016889999999999999999999998753
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC------c---cchHHHHHHHHhcCC-----------------
Q 047659 142 -GI-YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG------F---CVYEFLMNGLLRKGV----------------- 193 (619)
Q Consensus 142 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~---~~~~~l~~~~~~~~~----------------- 193 (619)
+. .....++..+...|...|++++|+..++++.+.. + ..+..+..++...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 11 1234678888999999999999999998876542 1 126666666777777
Q ss_pred HHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 194 IENAFHMHRQVIQR----GF-VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 194 ~~~A~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
+++|.+.+.+..+. +. .....++..+...+...|++++|...+++....... ...
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~------------------- 258 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD------------------- 258 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC-------------------
Confidence 66666665554432 00 011123444444444455555555554444321100 000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK-----LDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
......++..+...+...|++++|...+++..+.... ....++..+...+...|++++|...+++
T Consensus 259 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 259 ----------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 0000123444455555555555555555544432100 0134455555566666666666666655
Q ss_pred HHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 344 MLNG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 344 ~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
.... +. .....++..+...+...|++++|...+++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5432 00 011235556666677777777777777776654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=3.8e-13 Score=116.47 Aligned_cols=163 Identities=10% Similarity=0.055 Sum_probs=150.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
++..+..+...+...|++++|++.|+.+.. |.++.++..++.++.+.|++++|...++++....|....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------- 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE--------- 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------
Confidence 456777888889999999999999999998 899999999999999999999999999999999888776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~ 185 (619)
.+..++..+...++++.|...++......+. ++..+..++.+|.+.|++++|++.|+++.+.+| +. +..+.
T Consensus 75 -----~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 75 -----AYYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 7888999999999999999999999987655 889999999999999999999999999999988 33 99999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
.++...|++++|.+.|+++++..
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999873
No 66
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.6e-13 Score=135.75 Aligned_cols=301 Identities=15% Similarity=0.035 Sum_probs=161.9
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM- 141 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 141 (619)
....+...+..+...|++++|...|++++...|.++... ..++..++..|...|++++|...++++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHH----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334556777888888888888888888888776654310 016777888888888888888888877543
Q ss_pred ---CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c------chHHHHHHHHhcCC---------------
Q 047659 142 ---GIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C------VYEFLMNGLLRKGV--------------- 193 (619)
Q Consensus 142 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~------~~~~l~~~~~~~~~--------------- 193 (619)
+..| ...++..++..+...|++++|+..++++.+..+ + .+..+...+...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 1111 244667777788888888888888777655432 1 25555555555555
Q ss_pred -----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 047659 194 -----IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP-NVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 194 -----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 267 (619)
++.|.+.+....+.. . ..+..+ ...++..+...+...|++++|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------H---HTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH----------------------------H---hccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 555555554443320 0 000000 122344444444444444444
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CC-CHHHHHHHHHHHHcCCCHHHH
Q 047659 268 FQLYNLMMEMDL-VPD----LIIYSILIDGLFKAGRLKEGNELLLTALDRGL----KL-DVVVFSSVMDAYVGIGDVGRA 337 (619)
Q Consensus 268 ~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a 337 (619)
.+.+++..+... .++ ..++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 444444432100 001 12444445555555555555555555443210 00 133455555666666666666
Q ss_pred HHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHHhcCCh
Q 047659 338 VQTYDRMLNG----GFL-PNVISYSILIKGLCQQGRLVEACGLFGQVLIRR----LE-PSLLTYSSLIDGFCKSGKL 404 (619)
Q Consensus 338 ~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~~~~ 404 (619)
...+++..+. +.. ....++..+...+...|++++|...+++..+.. .. ....++..+...+...|+.
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 6666555432 100 013455666666777777777777777665431 01 1123344455555555544
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=1.9e-13 Score=135.14 Aligned_cols=236 Identities=12% Similarity=0.014 Sum_probs=150.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC----ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS----PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
...+......+...|++++|+..|+.+.. |.++ ..+..++.++...|++++|...+++++.......+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------
Confidence 33556677788899999999999999987 4442 56778999999999999999999998775221100
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC------------------
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS------------------ 162 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~------------------ 162 (619)
.+....++..++..|...|++++|...++++.+..+. ++ ..++..+..+|...|+
T Consensus 83 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 --QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred --cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 0001127888999999999999999999998764221 12 4478889999999999
Q ss_pred --hhHHHHHHHHHhhCC------c---cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhc
Q 047659 163 --VGQYYKLCRAMRGKG------F---CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PN----IVTCNKILKRLCIN 226 (619)
Q Consensus 163 --~~~A~~~~~~~~~~~------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~ 226 (619)
+++|++.+.+..+.. + ..+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 888888887765431 1 11555666666666666666666665543100 01 11444455555555
Q ss_pred CCcchHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 227 GQIGNASSLFDVLLLVGPK-PN----VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 227 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
|++++|...+++....... ++ ..++..+...+...|++++|.+.++...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5555555555554421100 00 2334444444555555555555544443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1e-13 Score=133.01 Aligned_cols=279 Identities=13% Similarity=0.027 Sum_probs=148.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
.+......+...|++++|+..|+.+.. |.+ ...+..++.++...|++++|...+++++.......+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 78 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------- 78 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc--------
Confidence 445556667778888888888888776 443 245667788888888888888888887664211000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC--------------------
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS-------------------- 162 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------------- 162 (619)
.+....++..++..|...|++++|...+++..+..+. ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 0001116777888888888888888888877653211 11 2356667777777777
Q ss_pred hhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 047659 163 VGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV 242 (619)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~ 242 (619)
+++|.+.+++...... ... ........+..+...+...|++++|...+++....
T Consensus 159 ~~~A~~~~~~a~~~~~------------------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVT------------------------ALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHHHHHH------------------------HHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------------------------hcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6666666665443210 000 00011223333444444444444444444443321
Q ss_pred CC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047659 243 GP-----KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PD----LIIYSILIDGLFKAGRLKEGNELLLTALDR 312 (619)
Q Consensus 243 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 312 (619)
.. .....++..+...+...|++++|.+.++........ .+ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 00 001124444555555555555555555544322000 01 334455555555556666665555554432
Q ss_pred C----C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 313 G----L-KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 313 ~----~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
. . .....++..+...+...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 0 01123455555666666666666666666554
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.3e-13 Score=130.61 Aligned_cols=281 Identities=15% Similarity=0.041 Sum_probs=197.8
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM---- 141 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 141 (619)
.+...+..+...|++++|...|++++...|.+.... ..++..++..|...|++++|++.++++...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 456678899999999999999999999887764310 017889999999999999999999987643
Q ss_pred CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 142 GIY-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 142 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
+.. ....++..+...+...|++++|...++++.+..+. .++. .....++..+.
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~---------------~~~~~~~~~l~ 130 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----------LNDK---------------VGEARALYNLG 130 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------TTCH---------------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----------hcCc---------------hHHHHHHHHHH
Confidence 111 12456777888888888888888888876543220 0000 00012333344
Q ss_pred HHHHhcCC--------------------cchHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 221 KRLCINGQ--------------------IGNASSLFDVLLLV----GP-KPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 221 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
..+...|+ +++|.+.+++.... +. ......+..+...+...|++++|.+.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444444 55555555443321 11 1124568888899999999999999999886
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 276 EMDL-VPD----LIIYSILIDGLFKAGRLKEGNELLLTALDRGLK-LD----VVVFSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 276 ~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
+... .++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5310 012 347888889999999999999999988753211 11 5677888999999999999999999876
Q ss_pred hC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 346 NG----GF-LPNVISYSILIKGLCQQGRLVEACGLFGQVLIR 382 (619)
Q Consensus 346 ~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 382 (619)
+. +. .....++..+...+...|++++|...+++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 53 11 112446778899999999999999999998875
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1e-12 Score=128.59 Aligned_cols=311 Identities=8% Similarity=-0.028 Sum_probs=165.9
Q ss_pred cCChhhHHHHHHHH---HccCCchhHHHHHHHhhc-----CCCCccH--HH--HHHHHHccCChhHHH-----------H
Q 047659 29 DLQFNQANAILANL---IKTNNPTPAIQFFKWTHN-----CVSSPNI--AQ--LIHVLLQSDMRDVAS-----------H 85 (619)
Q Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~-----~~~~~~~--~~--l~~~~~~~g~~~~A~-----------~ 85 (619)
.++++.+...+..+ .+++++++|..+++.+.. +.+.... .. .++.....+.++.+. .
T Consensus 6 ~~~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 6 VISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 35677777777766 679999999999999876 1233322 11 222233344445554 5
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhc
Q 047659 86 VFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM----GIYL-SPDLVQRLMSCLVDS 160 (619)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~ 160 (619)
.++.+-. .+.+.+.+ ... ..+...+..+...|++++|+..|+.+.+. +..+ ...++..++.+|...
T Consensus 86 ~~~~i~~-~~~~~~~~---l~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 156 (383)
T 3ulq_A 86 LLLEIDK-KQARLTGL---LEY-----YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM 156 (383)
T ss_dssp HHHHHHH-HTHHHHHH---HHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-cCCCchhH---HHH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 6665433 22222210 000 03445788889999999999999999864 1111 245788888999999
Q ss_pred CChhHHHHHHHHHhhCCc----------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCc
Q 047659 161 NSVGQYYKLCRAMRGKGF----------CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 161 ~~~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~ 229 (619)
|++++|+..+.++.+..+ .++..+..++...|++++|.+.+.++++.... ++..
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------- 221 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ--------------- 221 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------------
T ss_pred CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH---------------
Confidence 999999998888764311 11444555555555555555555554433100 0000
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM----DL-VPDLIIYSILIDGLFKAGRLKEGNE 304 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~ 304 (619)
....++..+...|...|++++|.+.|++..+. +. +....++..+...+.+.|++++|..
T Consensus 222 ----------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 222 ----------------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 00123444445555555555555555544431 11 1123444555555555555555555
Q ss_pred HHHHHHHc----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047659 305 LLLTALDR----GLKLDVVVFSSVMDAYVGIGD---VGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFG 377 (619)
Q Consensus 305 ~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 377 (619)
.+++..+. +.+.....+..+...+...|+ +++|..++++... .+.....+..+...|...|++++|...++
T Consensus 286 ~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 286 YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55554432 111112223445555556665 4455555544411 11122345556666666666666666666
Q ss_pred HHHH
Q 047659 378 QVLI 381 (619)
Q Consensus 378 ~~~~ 381 (619)
....
T Consensus 364 ~al~ 367 (383)
T 3ulq_A 364 KVEQ 367 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=1.1e-12 Score=136.77 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=112.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.++.++..++.++.+.|++++|+..|+++++.+|+... +|..++.+|.+.|++++|+..|+++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~--------------a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA--------------AHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666777777777777777777777776666555 666777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.++. +..++..+..+|.+.|++++|++.|+++++.+| + .+..+..++...|++++|++.|+++++.. +.+...+.
T Consensus 72 l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~ 149 (723)
T 4gyw_A 72 ISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYC 149 (723)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHh
Confidence 5544 566677777777777777777777777766666 2 26667777777777777777777777664 44566677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHh
Q 047659 218 KILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.+...+...|++++|.+.++++.+
T Consensus 150 ~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 150 NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777666553
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=7.3e-13 Score=132.90 Aligned_cols=194 Identities=10% Similarity=-0.062 Sum_probs=92.1
Q ss_pred CHHhHHHHHHHHHhcCCh-hHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSV-GQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILK 221 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 221 (619)
+...+..+...+...|++ ++|++.|+++++.+| +. +..+..++...|++++|.+.++.+++.. |+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 344444444444444444 444444444444444 11 4444444444444444444444444432 33344444444
Q ss_pred HHHhc---------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CC
Q 047659 222 RLCIN---------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE--------AKLEKAFQLYNLMMEMDLV--PD 282 (619)
Q Consensus 222 ~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~ 282 (619)
.+... |++++|.+.|++..+..+. +...|..+..+|... |++++|++.|+...+.... -+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 44444 5555555555555443222 344455555555444 5555555555555543210 14
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 283 LIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 283 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
...|..+..++...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555555555544322 344455555555555555555544433
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=2.4e-12 Score=134.12 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.++|++++|++.|+.+.+ |.+..++..++.++.+.|++++|+..|+++++.+|+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~--------- 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD--------- 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------
Confidence 456788888999999999999999999998 888999999999999999999999999999999998877
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---chHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC---VYEFLM 185 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~ 185 (619)
+|..++.+|.+.|++++|++.|+++++.++. +..++..++.+|.+.|++++|++.|+++++.+|+ .+..++
T Consensus 79 -----a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 79 -----AYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 8999999999999999999999999998765 8899999999999999999999999999999993 399999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 047659 186 NGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.++...|++++|.+.++++++.
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999999999887764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=7.7e-12 Score=112.43 Aligned_cols=201 Identities=9% Similarity=-0.077 Sum_probs=160.0
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHhhc--C-CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 30 LQFNQANAILANLIKTNNPTPAIQFFKWTHN--C-VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
.+|+.+......+...|++++|+..|+.+.. | ++...+..++.++...|++++|...|++++..+|....
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 77 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------- 77 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH-------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH-------
Confidence 3678888899999999999999999999988 5 78888889999999999999999999999999888766
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP-------DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
++..++.+|...|++++|+..|++.++..+. ++ ..+..+...+...|++++|++.|+++++.+|+
T Consensus 78 -------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 78 -------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999987654 56 56888889999999999999999999999886
Q ss_pred --c---hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 047659 180 --V---YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTL 254 (619)
Q Consensus 180 --~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 254 (619)
. +..+..++...| ...++.+...+ ..+...+.... ....+.+++|...+++..+..+. +..+...+
T Consensus 150 ~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3 777777776544 34455555554 33444443333 33456789999999999886433 34444333
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=1.6e-11 Score=120.18 Aligned_cols=301 Identities=7% Similarity=-0.065 Sum_probs=187.8
Q ss_pred HHHccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHH--HHHcCChhhHH-----------HHHH
Q 047659 73 VLLQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIEN--YVRIGKIDESV-----------EIFA 136 (619)
Q Consensus 73 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~ 136 (619)
.+.+.+++++|..+++++.+..+. +.+.+ .|..++.. ..-.++++.+. +.++
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~------------~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLH------------LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHH------------HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHH------------HHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 346899999999999999775432 22211 23333221 22233444444 6666
Q ss_pred HHHhCCCCCCHHhH------HHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 137 YMSDMGIYLSPDLV------QRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFV 210 (619)
Q Consensus 137 ~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (619)
.+... +. +...+ ...+..+...|++++|+..|+++.+... ..+-.
T Consensus 89 ~i~~~-~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~---------------------------~~~~~ 139 (383)
T 3ulq_A 89 EIDKK-QA-RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI---------------------------FVKDR 139 (383)
T ss_dssp HHHHH-TH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG---------------------------GCCCH
T ss_pred HHHhc-CC-CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh---------------------------hCCCH
Confidence 65432 11 11111 2244555666666666666666554310 00000
Q ss_pred C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC
Q 047659 211 P-NIVTCNKILKRLCINGQIGNASSLFDVLLLVGP------KPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLV-PD 282 (619)
Q Consensus 211 ~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~ 282 (619)
+ ...++..+...|...|++++|...+++...... .....+++.+...|...|++++|.+.|+...+.... ++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 0 123444445555555555555555555443100 011346777778888888888888888777643100 11
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC
Q 047659 283 ----LIIYSILIDGLFKAGRLKEGNELLLTALDR----GL-KLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNG----GF 349 (619)
Q Consensus 283 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 349 (619)
..++..+..++...|++++|.+.+++..+. +. +....++..+...+...|++++|.+.+++..+. +.
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 299 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 247888999999999999999999998872 22 335678899999999999999999999987653 11
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047659 350 LPNVISYSILIKGLCQQGR---LVEACGLFGQVLIRRLEP-SLLTYSSLIDGFCKSGKLRDGFSLYDNMIKR 417 (619)
Q Consensus 350 ~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 417 (619)
+.....+..+...+...|+ +++|..+++.. +..| ....+..+...|.+.|++++|...++...+.
T Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2223345667778888888 77777777765 2222 3446777889999999999999999998763
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=5.5e-13 Score=126.39 Aligned_cols=244 Identities=11% Similarity=0.009 Sum_probs=148.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|....++..++..+...|++++|...+++++........ ...+....++..++..|...|++++|...+++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444566778889999999999999999999874110000 00000111788999999999999999999999976
Q ss_pred C------CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------c---cchHHHHHHHHhcCCHHHHHHHHH
Q 047659 141 M------GI-YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG--------F---CVYEFLMNGLLRKGVIENAFHMHR 202 (619)
Q Consensus 141 ~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~---~~~~~l~~~~~~~~~~~~A~~~~~ 202 (619)
. +. .....++..++..+...|++++|+..++++.+.. + ..+..+..++...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 11 2245678889999999999999999999887642 2 127777888888888888888888
Q ss_pred HHHHC------C-CCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCC-------CCCChhh-H------HHHHHHHHhc
Q 047659 203 QVIQR------G-FVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVG-------PKPNVVT-F------STLINAFCKE 261 (619)
Q Consensus 203 ~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~-~------~~l~~~~~~~ 261 (619)
.+.+. + .+....++..+...+...|++++|.+.++++.... ..+.... + ..+...+...
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 87765 1 12234466677777788888888888887776421 1111111 1 1111122223
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 262 AKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
+.+.++...++...... +.+..++..+..++.+.|++++|.+.+++..+
T Consensus 258 ~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333444444433321 11334455555555666666666666555543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.4e-11 Score=106.50 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=115.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 77 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------------ 77 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------
Confidence 445566666778888888888887776 666677777888888888888888888888877666554
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGL 188 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~ 188 (619)
.+..++..+...|++++|.+.++++.+..+. ++..+..++.++...|++++|.+.++++.+..| +. +..++.++
T Consensus 78 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 78 --VATVLGLTYVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 6777777888888888888888887776443 667777777777777787777777777776665 22 66666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 047659 189 LRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~ 207 (619)
...|++++|.+.++.+.+.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 6667777776666666554
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.8e-12 Score=122.80 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=169.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhc-----C
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----G 95 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 95 (619)
.++.+..+...+...|++++|+.+|+.+.. +....++..++.++...|++++|...+++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344677788888999999999999998875 2223556789999999999999999999998863 1
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC------C-CCCHHhHHHHHHHHHhcCChhHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG------I-YLSPDLVQRLMSCLVDSNSVGQYYK 168 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~A~~ 168 (619)
..+. ...++..++..|...|++++|...|+++.+.. . .....++..++.++...|++++|++
T Consensus 106 ~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 174 (311)
T 3nf1_A 106 DHPA-----------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174 (311)
T ss_dssp TCHH-----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CChH-----------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1111 11278899999999999999999999998641 1 2245578889999999999999999
Q ss_pred HHHHHhhC--------Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------hhhHHHHHHHH
Q 047659 169 LCRAMRGK--------GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQRG-------FVPN-------IVTCNKILKRL 223 (619)
Q Consensus 169 ~~~~~~~~--------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~ll~~~ 223 (619)
.++++.+. .+ ..+..+..++...|++++|.+.++++.+.. ..+. ...+..+...+
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 99998775 33 228889999999999999999999998641 1111 11222333444
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
...+.+.++...+....... +.+..++..+..+|.+.|++++|.+.|++..+
T Consensus 255 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 255 KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677777877887776532 23567788999999999999999999998875
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=1.6e-11 Score=110.25 Aligned_cols=204 Identities=10% Similarity=-0.025 Sum_probs=160.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC-CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG-KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS 139 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 139 (619)
+.++..+...+..+...|++++|...|++++..+| .+.. .+..++.++...|++++|+..|++.+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV--------------TAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH--------------HHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 34668889999999999999999999999999887 5444 66779999999999999999999999
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc---------hHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 140 DMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV---------YEFLMNGLLRKGVIENAFHMHRQVIQRGF 209 (619)
Q Consensus 140 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 209 (619)
+..+. ++.++..++.+|...|++++|+..++++.+..| +. +..+...+...|++++|.+.++.+++..
T Consensus 70 ~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~- 147 (228)
T 4i17_A 70 KKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT- 147 (228)
T ss_dssp HTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-
T ss_pred HhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-
Confidence 97655 778899999999999999999999999999887 33 7778888889999999999999999874
Q ss_pred CC--ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 210 VP--NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287 (619)
Q Consensus 210 ~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 287 (619)
+. +...+..+..+|...| ...++++...+.. +...|.... ....+.+++|+..|+...+.... +..+..
T Consensus 148 p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~ 218 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQ 218 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 33 4567777777776543 4455666554322 344444333 33456789999999999886432 444444
Q ss_pred HH
Q 047659 288 IL 289 (619)
Q Consensus 288 ~l 289 (619)
.+
T Consensus 219 ~l 220 (228)
T 4i17_A 219 MQ 220 (228)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=8.1e-11 Score=114.66 Aligned_cols=266 Identities=14% Similarity=-0.009 Sum_probs=158.1
Q ss_pred HHHHHHHccCCchhHHHHHHHhhc--CCCCc-----cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHN--CVSSP-----NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.....+...|++++|+..++.+.. +.... ++..++.++...|++++|...+++++...+...+.. .
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~---- 91 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---Y---- 91 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---H----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH---H----
Confidence 334445679999999999998776 33322 355677888899999999999999987544322110 0
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC----CC--C-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc---
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG----IY--L-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC--- 179 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 179 (619)
...++..++..+...|++++|...+++.+... .. | ....+..+..++...|++++|...+++.....+.
T Consensus 92 -~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 92 -ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 00146778888999999999999999886532 11 2 2345566778888889999999888887654331
Q ss_pred -----chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCcchHHHHHHHHHhCCCCCC-
Q 047659 180 -----VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNI-VTCN-----KILKRLCINGQIGNASSLFDVLLLVGPKPN- 247 (619)
Q Consensus 180 -----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~- 247 (619)
.+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++......+.+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 1555666666777777777777766543111111 1111 122335566666666666666554322111
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 248 --VVTFSTLINAFCKEAKLEKAFQLYNLMMEM----DLVPDL-IIYSILIDGLFKAGRLKEGNELLLTAL 310 (619)
Q Consensus 248 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 310 (619)
...+..+...+...|++++|...++..... |..++. .++..+..++...|+.++|...+++..
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 113344555566666666666666555332 111111 133344444555555555555555544
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1e-10 Score=114.09 Aligned_cols=237 Identities=9% Similarity=-0.039 Sum_probs=129.0
Q ss_pred cCChhhHHHHHHHH---HccCCchhHHHHHHHhhc-----CCCCccH--HHH--HHHHHccCChhHHH---------HHH
Q 047659 29 DLQFNQANAILANL---IKTNNPTPAIQFFKWTHN-----CVSSPNI--AQL--IHVLLQSDMRDVAS---------HVF 87 (619)
Q Consensus 29 ~~~~~~~~~~~~~~---~~~~~~~~A~~~~~~~~~-----~~~~~~~--~~l--~~~~~~~g~~~~A~---------~~~ 87 (619)
.++.+.+...+..+ ..++++++|..+++.+.. ..+.... ..+ ++.....+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 34667788888777 689999999999998765 2222222 111 12222223333333 555
Q ss_pred HHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHhcCC
Q 047659 88 DKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS----PDLVQRLMSCLVDSNS 162 (619)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 162 (619)
+.+-.. +.+.+. +..- ..+...+..+...|++++|+..|+.+.+.... ++ ..++..++.+|...|+
T Consensus 86 ~~i~~~-~~~~~~---~l~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~ 156 (378)
T 3q15_A 86 ETIETP-QKKLTG---LLKY-----YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHGG-GHHHHH---HHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcc-CCCCcc---HHHH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC
Confidence 554221 111110 0000 04556777888999999999999999764211 22 3467788888899999
Q ss_pred hhHHHHHHHHHhhCCc----------cchHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CChhhHHHHHHHHHhcC
Q 047659 163 VGQYYKLCRAMRGKGF----------CVYEFLMNGLLRKGVIENAFHMHRQVIQRG----FV-PNIVTCNKILKRLCING 227 (619)
Q Consensus 163 ~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~~ 227 (619)
++.|+..+.++.+..+ .++..+..++...|++++|.+.+.++++.. .. ....++..+..+|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 9999988888654211 114555556666666666666665554421 00 01123444444445555
Q ss_pred CcchHHHHHHHHHh-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 228 QIGNASSLFDVLLL-----VGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 228 ~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
++++|.+.|++... ..+. ...++..+...+.+.|++++|...+++..
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555544443 2111 13334444444444444444444444443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.4e-11 Score=106.64 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+...|++++|+..++++.+..+. +...+..++..+...|++++|...++++.+..| +. +..++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555443322 444555555555555555555555555554444 11 4445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQL 270 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 270 (619)
.|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++++....+ .+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555543 34445555555555566666666666665555422 2445555556666666666666666
Q ss_pred HHHHHh
Q 047659 271 YNLMME 276 (619)
Q Consensus 271 ~~~m~~ 276 (619)
++.+.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=5.4e-12 Score=132.47 Aligned_cols=182 Identities=7% Similarity=-0.067 Sum_probs=122.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHH--------HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMV--------IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
|.++.++...+ ...|++++|...+++++ ..+|.+.+ ++..++.+|.+.|++++|+
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~ 453 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE--------------LPLMEVRALLDLGDVAKAT 453 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH--------------HHHHHHHHHHHHTCHHHHH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh--------------HHHHHHHHHHhcCCHHHHH
Confidence 44444444333 66777777777777777 65565555 6677777777777777777
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGF 209 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 209 (619)
..|+++++.++. +...|..+..+|...|++++|++.|+++++.+| +. +..+..++...|++++ .+.++++++.+
T Consensus 454 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~- 530 (681)
T 2pzi_A 454 RKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN- 530 (681)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-
T ss_pred HHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-
Confidence 777777776544 667777777777777777777777777777777 22 7777777777777777 77777777765
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
+.+...|..+..++...|++++|.+.|++..+.++. +...+..+..++...++
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 556667777777777777777777777777654322 34556666666555443
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=4.4e-10 Score=109.43 Aligned_cols=231 Identities=11% Similarity=-0.015 Sum_probs=131.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc------
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV------ 180 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~------ 180 (619)
++...+..+...|++++|...+++.+...+..++. ++..+...+...|++++|...+++.....+ +.
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45566777888999999999999998865444433 456677888889999999999988765432 11
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC----Chh
Q 047659 181 YEFLMNGLLRKGVIENAFHMHRQVIQR----GFV--P-NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKP----NVV 249 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~ 249 (619)
+..+...+...|++++|.+.+++.++. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 445666667777777777777766553 111 1 12344455566666677777777776665432211 123
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD--LIIYS----ILIDGLFKAGRLKEGNELLLTALDRGLKL---DVVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 320 (619)
++..+...+...|++++|...++........++ ..... ..+..+...|++++|...++........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555566666666666666666543211111 11111 12223445566666666655554322110 1122
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRM 344 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~ 344 (619)
+..+...+...|++++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444455555555555555444
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.33 E-value=1.5e-11 Score=108.41 Aligned_cols=169 Identities=11% Similarity=0.008 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHH----------------HHHHHHccCChhHHHHHHHHHHHh
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQ----------------LIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
++.+......+...|++++|+..|+.+.. |.++.++.. ++.++.+.|++++|...|+++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44555666677788888888888888776 666677777 777777888888888888888877
Q ss_pred cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHH
Q 047659 94 FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS--VGQYYKLCR 171 (619)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 171 (619)
+|.+.+ ++..++.+|...|++++|+..|+++++.+|. ++.++..+..+|...|+ .+.+...+.
T Consensus 84 ~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 84 APNNVD--------------CLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp CTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777666 6777777788888888888888887776554 67777777777654443 334455555
Q ss_pred HHhhCCcc--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047659 172 AMRGKGFC--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 172 ~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (619)
.+....+. .+.....++...|++++|...|+++++. .|+.....
T Consensus 149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 55433331 1334445555566666666666666654 34444333
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=2.7e-11 Score=111.35 Aligned_cols=139 Identities=9% Similarity=-0.038 Sum_probs=107.7
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
.+-+++.+......+.+.|++++|+..|+.+.. |.+ +.++..++.++.+.|++++|...|++++..+|.++..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV-- 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--
Confidence 445677888899999999999999999999987 556 6788999999999999999999999999998865331
Q ss_pred HHHhhcCCCcccHHHHHHHHHH--------cCChhhHHHHHHHHHhCCCCCCHHhH-----------------HHHHHHH
Q 047659 103 LFRDSLGDFGCDYSFLIENYVR--------IGKIDESVEIFAYMSDMGIYLSPDLV-----------------QRLMSCL 157 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~ 157 (619)
..++..++.++.. .|++++|+..|+++++..|. ++... ..++.+|
T Consensus 89 ---------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 89 ---------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp ---------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1278888999999 99999999999999987554 33333 3345555
Q ss_pred HhcCChhHHHHHHHHHhhCCc
Q 047659 158 VDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 158 ~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+.|++++|+..|+++++..|
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHccCHHHHHHHHHHHHHHCC
Confidence 555555555555555555444
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2.7e-11 Score=112.83 Aligned_cols=155 Identities=12% Similarity=0.039 Sum_probs=119.2
Q ss_pred HHccCCchhHHHHHHHhhc----------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhc-----CCchhHHHHHHh
Q 047659 42 LIKTNNPTPAIQFFKWTHN----------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----GKTYNFFRLFRD 106 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~ 106 (619)
....|++++|+.+|+.+.. +....++..++.++...|++++|...+++++... +.++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------- 83 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------- 83 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH-------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH-------
Confidence 3457888888888887776 2234567889999999999999999999999863 22111
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC-----C--CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG-----I--YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGK--- 176 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 176 (619)
...++..++..|...|++++|++.|++++... + +....++..++.++...|++++|+..++++.+.
T Consensus 84 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 84 ----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp ----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11278999999999999999999999997641 1 224567888999999999999999999998765
Q ss_pred -----Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 177 -----GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 177 -----~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.+ ..+..+..++...|++++|.+.++++++.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 12777778888888888888888877764
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=9.1e-12 Score=103.18 Aligned_cols=136 Identities=13% Similarity=0.026 Sum_probs=99.6
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+..+|+++.|+..++.+.. |.++..+..++.++.+.|++++|+..|+++++.+|.++. +|..++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~--------------a~~~lg 72 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK--------------AHRFLG 72 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHH
Confidence 4456777888888887776 566677778888888888888888888888888777766 778888
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH-HHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKL-CRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
.+|.+.|++++|+..|+++++.+|. ++.++..++.+|.+.|++++|.+. ++++.+.+| ++ |......+...|
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888876554 677788888888888887766554 467777666 22 444455554444
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=8.5e-10 Score=107.51 Aligned_cols=231 Identities=9% Similarity=-0.035 Sum_probs=128.5
Q ss_pred HHHHHHH--HccCChhHHHHHHHHHHHhcCC---chhHHHHHHhhcCCCcccHHHHHHH--HHHcCChhhHH--------
Q 047659 68 AQLIHVL--LQSDMRDVASHVFDKMVIQFGK---TYNFFRLFRDSLGDFGCDYSFLIEN--YVRIGKIDESV-------- 132 (619)
Q Consensus 68 ~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-------- 132 (619)
..+-.++ ...+++++|..+++++...... +.+.+ .|..++.. ..-.+.+..+.
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~------------~yy~l~~~r~~~~~~~~~~~~~~~~~~~~ 81 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLL------------IYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHH------------HHHHHHHHHHHHHHHTCCC--------CH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHHhhcCcccccccccch
Confidence 3444455 7899999999999998765332 12211 33333322 11223333333
Q ss_pred -HHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHH
Q 047659 133 -EIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 133 -~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~ 198 (619)
+.++.+.....+.+. ..+...+..+...|++++|+..|+++.+... ..+..+..++...|+++.|.
T Consensus 82 ~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 666666432111111 1233455566778888888888888765422 12666777777777777777
Q ss_pred HHHHHHHHCCC-----C-CChhhHHHHHHHHHhcCCcchHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHH
Q 047659 199 HMHRQVIQRGF-----V-PNIVTCNKILKRLCINGQIGNASSLFDVLLLV----GPK-PNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 199 ~~~~~~~~~~~-----~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a 267 (619)
..+.++.+... . ....+++.+...|...|++++|.+.|++.... +.. ....+++.+...|...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 77777665310 1 11334556666666677777777766665532 100 1123455566666666666666
Q ss_pred HHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 268 FQLYNLMME-----MDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 268 ~~~~~~m~~-----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.|++..+ .... ...++..+...+.+.|++++|...+++..+
T Consensus 242 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666554 2211 244555555666666666666666665554
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=1.9e-09 Score=99.45 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=181.1
Q ss_pred hHHHHHHHHHccCCc-hhHHHHHHHhhc--CCCCccHHHHHHHHHccC--ChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 34 QANAILANLIKTNNP-TPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD--MRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
.+...+.+..+.|.+ ++|++.++.++. |.+..+|.....++...| .+++++..++.++..+|++..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--------- 104 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--------- 104 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------
Confidence 344444444555554 699999999998 888899999999999999 999999999999999999877
Q ss_pred CCCcccHHHHHHHH----HHc---CChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHhhCCc-
Q 047659 109 GDFGCDYSFLIENY----VRI---GKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--QYYKLCRAMRGKGF- 178 (619)
Q Consensus 109 ~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~- 178 (619)
+|+.-...+ ... +++++++.+++.+++.+++ +..+|+....++.+.|.++ ++++.++++++.++
T Consensus 105 -----aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 105 -----IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp -----HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 455444444 444 7899999999999998776 9999999999999999988 99999999999988
Q ss_pred cc--hHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch-HHHHHHHHHhCC--CCCC
Q 047659 179 CV--YEFLMNGLLRKGV------IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN-ASSLFDVLLLVG--PKPN 247 (619)
Q Consensus 179 ~~--~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~~~--~~~~ 247 (619)
+. |......+...+. ++++++.+..++... +.|...|+.+-..+.+.|+... +....+++...+ ...+
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 33 6666666666666 888999999988886 7888889988888888887544 445666655432 1235
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047659 248 VVTFSTLINAFCKEAKLEKAFQLYNLMME 276 (619)
Q Consensus 248 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 276 (619)
...+..+..+|.+.|+.++|.++++.+.+
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 67777888888888888888888888875
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=6.6e-11 Score=104.31 Aligned_cols=161 Identities=9% Similarity=-0.000 Sum_probs=109.4
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHH----------------HHHHHHHcCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSF----------------LIENYVRIGK 127 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~ 127 (619)
...+...+..+...|++++|...|++++..+|.+.+ +|.. ++.+|.+.|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE--------------MYYWTNVDKNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH--------------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH--------------HHHHhhhcchhhhhHHHHHHHHHHHHHCCC
Confidence 445667788899999999999999999999888766 4444 7888888888
Q ss_pred hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC--HHHHHHHHH
Q 047659 128 IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV--IENAFHMHR 202 (619)
Q Consensus 128 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~--~~~A~~~~~ 202 (619)
+++|+..|++.++..|. ++..+..++.++...|++++|+..|+++++.+| +. +..+..++...|+ ...+...+.
T Consensus 70 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88888888888877655 777888888888888888888888888887777 22 6666666554433 233344444
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 203 QVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 203 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.+.. ..|....+.....++...|++++|...|++.++
T Consensus 149 ~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 149 KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp ---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4331 122222333334444555666666666666655
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=1.3e-10 Score=106.74 Aligned_cols=107 Identities=7% Similarity=-0.045 Sum_probs=91.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+...+..+.+.|++++|...|++++..+|.+... ..++..++.+|.+.|++++|+..|+++++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA-----------ADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch-----------HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 5677888899999999999999999999999988876210 11788999999999999999999999998
Q ss_pred CCCC-C-CHHhHHHHHHHHHh--------cCChhHHHHHHHHHhhCCc
Q 047659 141 MGIY-L-SPDLVQRLMSCLVD--------SNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~-~-~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~ 178 (619)
..|. | .+.++..++.++.. .|++++|+..|+++++..|
T Consensus 81 ~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 81 IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 7553 2 25678888899988 9999999999999999888
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=8.3e-11 Score=109.49 Aligned_cols=161 Identities=14% Similarity=0.029 Sum_probs=112.2
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC------CC-CCCH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM------GI-YLSP 147 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~ 147 (619)
...|++++|...|++++....... ....|....++..++..|...|++++|+..++++++. +. +...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTS------GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA 85 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHH------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 467899999999999988521100 0000111227889999999999999999999999764 11 2245
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhC--------Cc---cchHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGK--------GF---CVYEFLMNGLLRKGVIENAFHMHRQVIQR------G-F 209 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~ 209 (619)
.++..++.+|...|++++|++.++++.+. .+ ..+..+..++...|++++|...++++++. + .
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67888999999999999999999987765 23 12667777777777777777777777664 1 1
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
+....++..+...+...|++++|...+++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22344566666667777777777777766654
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=1e-10 Score=100.10 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=83.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+...+..+.+.|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++....+
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD--------------VKLAKADCLLETKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH--------------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence 34455555666666666666666666665555544 555666666666666666666666554433
Q ss_pred CCHHhHHHHHHH-HHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047659 145 LSPDLVQRLMSC-LVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVP-NIVTCNKI 219 (619)
Q Consensus 145 ~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l 219 (619)
++..+...... +...+....|+..+++.++.+| ++ +..+..++...|++++|...++.+++....+ +...+..+
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 33332222211 1122222335555555555555 22 5555555555555555555555555543211 23355555
Q ss_pred HHHHHhcCCcchHHHHHHHHH
Q 047659 220 LKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 220 l~~~~~~~~~~~A~~~~~~~~ 240 (619)
..++...|+.++|...|++.+
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 566666666666666655543
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=3.2e-10 Score=101.35 Aligned_cols=187 Identities=9% Similarity=-0.075 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
+++.+......+.+.|++++|+..|+.+.. |.++ .++..++.++.+.|++++|+..|+++++.+|.+....
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~---- 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID---- 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH----
Confidence 667778888889999999999999999987 4443 5788999999999999999999999999998875421
Q ss_pred hhcCCCcccHHHHHHHHHH------------------cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 047659 106 DSLGDFGCDYSFLIENYVR------------------IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
.++..++.++.+ .|++++|+..|+++++..|. ++.++........
T Consensus 79 -------~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~--------- 141 (225)
T 2yhc_A 79 -------YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF--------- 141 (225)
T ss_dssp -------HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH---------
T ss_pred -------HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH---------
Confidence 034445555544 46677777777777765443 2222211111000
Q ss_pred HHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 168 KLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN---IVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
+..... .....+...+...|+++.|+..++.+++.. +.+ ...+..+..++.+.|++++|.+.++.+...++
T Consensus 142 -~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 142 -LKDRLA----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHH----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 000000 001345566777888888888888887763 222 24567777888888888888888887776543
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=2.9e-11 Score=100.16 Aligned_cols=142 Identities=7% Similarity=-0.115 Sum_probs=99.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHh
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDL 149 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 149 (619)
|+.++...|++++|+..+++++...|..+. .+..++..|.+.|++++|++.|+++++..|. ++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~--------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI--------------KGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT--------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 556667778888888888888776555444 6778888888888888888888888887655 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHh
Q 047659 150 VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHM-HRQVIQRGFVPNIVTCNKILKRLCI 225 (619)
Q Consensus 150 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~ll~~~~~ 225 (619)
|..++.+|.+.|++++|+..|+++++.+| ++ +..+..++...|++++|.+. ++++++.. +.+..+|......+..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 88888888888888888888888877776 22 66667777777776655443 46666653 4455556555555555
Q ss_pred cC
Q 047659 226 NG 227 (619)
Q Consensus 226 ~~ 227 (619)
.|
T Consensus 147 ~G 148 (150)
T 4ga2_A 147 EG 148 (150)
T ss_dssp CC
T ss_pred hC
Confidence 44
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=8.8e-11 Score=123.26 Aligned_cols=148 Identities=10% Similarity=-0.004 Sum_probs=126.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR 222 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 222 (619)
+...+..++.++.+.|++++|+..|+++++.+| +. +..+..++...|++++|.+.|+++++.. +.+...+..+..+
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAAT 510 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 678899999999999999999999999999888 33 8899999999999999999999999986 5677889999999
Q ss_pred HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 047659 223 LCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPD-LIIYSILIDGLFKAGR 298 (619)
Q Consensus 223 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 298 (619)
+...|++++ .+.|++..+.++. +...|..+..++.+.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999 9999999986544 6778999999999999999999999998875 344 5667677777655443
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.23 E-value=1e-10 Score=100.05 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+......+.+.|++++|+..|+.+.. |.++.++..++.++.+.|++++|...|++++...| ++.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~----------- 74 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS----------- 74 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH-----------
Confidence 4566777888999999999999999887 89999999999999999999999999999998877 544
Q ss_pred CcccHHHHHHH-HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---c--chHHH
Q 047659 111 FGCDYSFLIEN-YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---C--VYEFL 184 (619)
Q Consensus 111 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--~~~~l 184 (619)
.+..+... +...++..+|+..+++.++..|. ++..+..+..++...|++++|+..|+++++.+| + .+..+
T Consensus 75 ---~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 75 ---YKSLIAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred ---HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 22222222 22334455689999999987655 789999999999999999999999999999987 2 38889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
..++...|+.++|...+++.+.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999988764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=2.4e-10 Score=106.34 Aligned_cols=164 Identities=11% Similarity=-0.023 Sum_probs=124.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.+ ++..++..+.+.|++++|+..++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE--------------IGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH--------------HHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh--------------HHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 666677788888888888888888888888888888776 778888888888888888888888876
Q ss_pred CCCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhh
Q 047659 141 MGIYLSPDL-VQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFV-PNIVT 215 (619)
Q Consensus 141 ~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 215 (619)
..+ +... .......+.+.++.+.|+..+++.....| +. +..+...+...|++++|.+.+..+++.... .+...
T Consensus 180 ~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 QDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp GGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred hhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 544 3333 33333446677778888888888888877 33 777888888888888888888888877421 12567
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 216 CNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 216 ~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
+..++..+...|+.++|...+.+..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 7788888888888888887777654
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=8.8e-10 Score=102.91 Aligned_cols=175 Identities=10% Similarity=-0.076 Sum_probs=109.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG 126 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 126 (619)
++++|.+.|+.+ +.++...|++++|...|++++...+..-+. +....+|..++.+|.+.|
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE--------DEAGNTYVEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHCC
Confidence 477788877766 356778899999999998888753211000 000117788888888899
Q ss_pred ChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCc---------cchHHHHHHHHhc
Q 047659 127 KIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDS-NSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRK 191 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~ 191 (619)
++++|+..|++.++..+.. + ..++..+..+|... |++++|+..|++.++..+ ..+..+...+...
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 9999998888887542211 1 34566777777775 777777777777665433 1145556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 192 GVIENAFHMHRQVIQRGFVPNIV------TCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
|++++|+..++++.+........ .+..+..++...|++++|...|++...
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666553221111 344455555556666666666666554
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=1.9e-10 Score=107.03 Aligned_cols=161 Identities=11% Similarity=-0.027 Sum_probs=140.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+...|++++|+..|+.+.. |.++.++..++.++.+.|++++|...+++++..+|....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~--------- 186 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY--------- 186 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---------
Confidence 344566677778899999999999999988 888999999999999999999999999999998885432
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--c--hHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--V--YEF 183 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~--~~~ 183 (619)
........+.+.++.++|+..+++.+...|. ++..+..+...|...|++++|+..|.++++.+| + . +..
T Consensus 187 -----~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 187 -----QGLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp -----HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred -----HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4455555677889999999999999998665 899999999999999999999999999999888 2 3 899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047659 184 LMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 184 l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
++..+...|+.++|...+++.+.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999887764
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=9.4e-10 Score=98.29 Aligned_cols=189 Identities=7% Similarity=-0.067 Sum_probs=137.2
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..+..++..+.+.|++++|+..|++++...|.++.. ..++..++.+|.+.|++++|+..|+++++..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS-----------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 44567788899999999999999999999988765321 1178889999999999999999999999876
Q ss_pred CCCC--HHhHHHHHHHHHh------------------cCChhHHHHHHHHHhhCCccc-hHHHHHHHHhcCCHHHHHHHH
Q 047659 143 IYLS--PDLVQRLMSCLVD------------------SNSVGQYYKLCRAMRGKGFCV-YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 143 ~~~~--~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~ 201 (619)
|... +.++..+..++.+ .|++++|+..|+++++..|+. +...+... ...+.
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~--------l~~~~ 143 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR--------LVFLK 143 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------HHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH--------HHHHH
Confidence 6522 1356666666654 567788888888888887733 21111000 00000
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047659 202 RQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEMD 278 (619)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 278 (619)
..+ ......+...|.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 144 ~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 144 DRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 110 11123566788899999999999999998644321 2568889999999999999999999998864
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=1e-08 Score=94.57 Aligned_cols=219 Identities=8% Similarity=0.036 Sum_probs=154.9
Q ss_pred ccCC-hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC--ChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 76 QSDM-RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--KIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 76 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
+.|. .++|+..+++++..+|.... +|+.-...+...| ++++++++++.++..+|+ +..+|+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~~~t--------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~ 108 (306)
T 3dra_A 44 KAEEYSERALHITELGINELASHYT--------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNY 108 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCcHHHH--------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHH
Confidence 4444 46899999999999998877 7777777888888 999999999999988776 7778877
Q ss_pred HHHHH----Hhc---CChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 153 LMSCL----VDS---NSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE--NAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 153 l~~~~----~~~---~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
...++ ... +++++++++++++.+.+| +. |..-.-++...|.++ ++++.++.+++.+ +.|...|+.-.
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 76666 555 678888888888888887 32 666666666677777 8888888888776 66777777766
Q ss_pred HHHHhcCC------cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 047659 221 KRLCINGQ------IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLE-KAFQLYNLMMEMD--LVPDLIIYSILID 291 (619)
Q Consensus 221 ~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~--~~~~~~~~~~ll~ 291 (619)
.++...+. ++++++.++.++...+. |...|+.+...+.+.|+.. .+..+...+.+.+ -..+...+..+..
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 66666655 66677777777665443 6667777766666666533 3444555544332 1235566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047659 292 GLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 77777777777777777665
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=9.5e-10 Score=102.68 Aligned_cols=196 Identities=8% Similarity=-0.070 Sum_probs=144.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc----CCC----CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN----CVS----SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+......+...|++++|++.|+.+.. ..+ ..++..++.++...|++++|...|++++...+..-+.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~----- 113 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF----- 113 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence 456666677789999999999998876 112 4577889999999999999999999999865432110
Q ss_pred hhcCCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 106 DSLGDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
.....++..++.+|... |++++|+..|++.++..+.. + ..++..++.++.+.|++++|+..|+++.+..++
T Consensus 114 ---~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 114 ---RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred ---HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 00011788999999996 99999999999998753321 1 356888999999999999999999999987762
Q ss_pred ----------chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHH--hcCCcchHHHHHHHH
Q 047659 180 ----------VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIV------TCNKILKRLC--INGQIGNASSLFDVL 239 (619)
Q Consensus 180 ----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~--~~~~~~~A~~~~~~~ 239 (619)
.+..+..++...|+++.|...+++.++.. |+.. .+..++..+. ..+++++|+..|+.+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 14567788889999999999999988753 2211 2333444443 234556666666555
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=7.8e-09 Score=94.18 Aligned_cols=251 Identities=10% Similarity=0.006 Sum_probs=154.1
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhh
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDS 107 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 107 (619)
..-+|+++. -+....-.|++..++.-...+..........-+.+++...|+++... ..++.
T Consensus 10 ~~~~~~~lf-~ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~----------~~~~~-------- 70 (310)
T 3mv2_B 10 HSQDPMDYF-NIKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD----------PTSKL-------- 70 (310)
T ss_dssp -----CCTH-HHHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC----------SSSTT--------
T ss_pred cCCCcHHHH-HHHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC----------CCCHH--------
Confidence 344666665 35566678999988885544432222233344557778888777421 11111
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYE 182 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~ 182 (619)
..+. .+...|... .|+..|++....+ .++..++..++.++...|++++|++++.+.+..++ +.+.
T Consensus 71 ----~~a~-~~la~~~~~----~a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~ 140 (310)
T 3mv2_B 71 ----GKVL-DLYVQFLDT----KNIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLL 140 (310)
T ss_dssp ----HHHH-HHHHHHHTT----TCCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHH
T ss_pred ----HHHH-HHHHHHhcc----cHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHH
Confidence 0022 222233332 2778888887654 44666677888888888999999999988877764 2277
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHH--HHhcC--CcchHHHHHHHHHhCCCCCChhhHHH
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVP-----NIVTCNKILKR--LCING--QIGNASSLFDVLLLVGPKPNVVTFST 253 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (619)
.++.++.+.|+++.|.+.++.+.+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l 216 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence 7888888888888888888888776 44 24455555544 22233 788888888887654 334223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047659 254 LINAFCKEAKLEKAFQLYNLMMEMD---------LVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRG 313 (619)
Q Consensus 254 l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 313 (619)
++.++.+.|++++|.+.++.+.+.. -+-+..++..+|......|+ +|.+++.++.+..
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4447778888888888887665421 02255566455555555665 6777787777764
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=4.1e-10 Score=116.29 Aligned_cols=157 Identities=11% Similarity=-0.043 Sum_probs=119.0
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENY 122 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (619)
.|++++|++.|+.+.. |.+..++..++.++.+.|++++|...|+++++.+|.... ++..++.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE--------------AVARLGRVR 67 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH--------------HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHH
Confidence 4788899999998887 777888999999999999999999999999998887766 788899999
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhc---CCHHH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRK---GVIEN 196 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~---~~~~~ 196 (619)
...|++++|.+.|++.++..+. +...+..+..+|.+.|++++|++.|+++.+.+| +. +..+..++... |+.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~ 146 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV 146 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999887654 788899999999999999999999999988887 33 88888888888 99999
Q ss_pred HHHHHHHHHHCCCCCChhhHH
Q 047659 197 AFHMHRQVIQRGFVPNIVTCN 217 (619)
Q Consensus 197 A~~~~~~~~~~~~~~~~~~~~ 217 (619)
|.+.++++++.+ +.+...+.
T Consensus 147 A~~~~~~al~~~-p~~~~~~~ 166 (568)
T 2vsy_A 147 LSAQVRAAVAQG-VGAVEPFA 166 (568)
T ss_dssp HHHHHHHHHHHT-CCCSCHHH
T ss_pred HHHHHHHHHhcC-CcccChHH
Confidence 999999998875 33334443
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=9.1e-10 Score=89.22 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=82.6
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
++..++..+...|++++|...+++++...|.+.. .+..++..+...|++++|...++++...++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-
Confidence 4555666666667777777777777666555443 5566666666677777777777776665433
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
++..+..++..+...|++++|...++++.+..| +. +..++.++...|++++|...++.+.+.
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 556666666667777777777777776666555 22 566666667777777777777766654
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.13 E-value=3.6e-10 Score=92.87 Aligned_cols=104 Identities=10% Similarity=-0.049 Sum_probs=84.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+..++..++..+.+.|++++|...|++++..+|.++. .|..++.+|...|++++|+..|+++++
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~--------------~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD--------------YIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 666677888888888888888888888888888887766 778888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCcc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (619)
..|. ++..|..+..+|.+.|++++|+..|+++++..|+
T Consensus 99 l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 99 LGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred hCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7655 6778888888888888888888888888777663
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=2e-09 Score=87.13 Aligned_cols=126 Identities=12% Similarity=0.126 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
++..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|...++++...++ +. +..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3455555666666666666666666554332 455555566666666666666666666655555 21 5555556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLL 241 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 241 (619)
.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665553 33455555566666666666666666666554
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=1.2e-09 Score=86.99 Aligned_cols=103 Identities=8% Similarity=-0.039 Sum_probs=55.3
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcc
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGC 113 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (619)
......+.+.|++++|++.|+.+.. |.++.+|..++.++.+.|++++|+..|+++++.+|....
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------- 82 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK-------------- 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--------------
Confidence 3444445555555555555555554 555555555555555555555555555555555555444
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+|..++.+|...|++++|++.|+++++..|. ++.++..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 4555555555555555555555555554433 44444433
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=7.1e-07 Score=89.23 Aligned_cols=409 Identities=11% Similarity=0.041 Sum_probs=214.6
Q ss_pred HcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCC-HHHHHH
Q 047659 124 RIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGV-IENAFH 199 (619)
Q Consensus 124 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~-~~~A~~ 199 (619)
+.| ++..|+.+|++++.. -|. |+++.+..+|++.+..-|++ |...+....+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 377777777777653 222 67777777777777766633 5555555554442 344556
Q ss_pred HHHHHHHC-CC-CCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 200 MHRQVIQR-GF-VPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 200 ~~~~~~~~-~~-~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+|+.++.. |. ..+...|...+..+.. .++.+.+.++|+..+.. |..+ +..+-..| ..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y-------------~~ 132 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDF-------------EN 132 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHH-------------HH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHH-------------HH
Confidence 66666554 32 2345566666554432 34556666677766652 1111 11111111 11
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--C-----HHHHHHHHHHHHh
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIG--D-----VGRAVQTYDRMLN 346 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~ 346 (619)
+... .+..+...++... .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++..
T Consensus 133 fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~ 207 (493)
T 2uy1_A 133 FELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD 207 (493)
T ss_dssp HHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence 1110 0111111111111 1123333444443332100113345555544433221 1 2345667777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 047659 347 GGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAVVC 426 (619)
Q Consensus 347 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 426 (619)
. .+.+...|...+..+.+.|+.+.|..+++..... |....... .|....+.++. ++.+.+.-....
T Consensus 208 ~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~---- 273 (493)
T 2uy1_A 208 S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGE---- 273 (493)
T ss_dssp H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-------
T ss_pred c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhc----
Confidence 4 2445667777777777777778888888777766 33222111 22222111111 222221100000
Q ss_pred HHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCHH
Q 047659 427 SLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIAS-QGSLS 505 (619)
Q Consensus 427 ~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 505 (619)
.+.+ .. . ........|...+....+.++.+.|..+|+.. ... ..+...|......-.. .++.+
T Consensus 274 -------~~~~-----~~-~-~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 274 -------AESA-----EK-V-FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred -------cchh-----hh-h-cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChH
Confidence 0000 00 0 00002245666677666788899999999988 321 2233444332222222 34799
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLT 585 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (619)
.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998852 2235556777887888999999999999973 267889999998888999999999998887
Q ss_pred h--CC---CCCC------------HHHHHHHHHHHhhc
Q 047659 586 D--RG---LEPD------------IITYNTIICGYCSL 606 (619)
Q Consensus 586 ~--~g---~~p~------------~~~~~~ll~~~~~~ 606 (619)
+ .+ -.|- .-++..+++.|.-.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 412 DAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp HHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred HHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 4 11 1111 25678888888543
No 112
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=5e-09 Score=95.46 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcC
Q 047659 83 ASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 83 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 161 (619)
|+..|++.+...+.... .+..++.++...|++++|++++.+.+..++. -+...+..++.++.+.|
T Consensus 85 a~~~l~~l~~~~~~~~~--------------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPY--------------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp CCHHHHHTTTTSCCCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCcH--------------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC
Confidence 66777777665433222 4457777777788888888888887776652 25667777778888888
Q ss_pred ChhHHHHHHHHHhhCCc------cc-hHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc
Q 047659 162 SVGQYYKLCRAMRGKGF------CV-YEFLMNG--LLRKG--VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG 230 (619)
Q Consensus 162 ~~~~A~~~~~~~~~~~~------~~-~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 230 (619)
+.+.|.+.++++.+..+ +. ...++.+ ....| ++..|..+|+++.+. .|+..+...++.++...|+++
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~ 228 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIA 228 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHH
Confidence 88888888888777666 22 4444444 22233 788888888887655 344333344444777788888
Q ss_pred hHHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 231 NASSLFDVLLLVG---------PKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 231 ~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
+|.+.++.+.+.. -+.++.+...++......|+ +|.+++.++.+.
T Consensus 229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 8888887655421 02256666555555555665 777888888775
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=4.3e-09 Score=92.82 Aligned_cols=172 Identities=12% Similarity=-0.061 Sum_probs=106.4
Q ss_pred hHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC---
Q 047659 50 PAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG--- 126 (619)
Q Consensus 50 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 126 (619)
+|++.|+.+.+..++.++..++.++...+++++|...|+++.+.+ ++. ++..|...|.. +
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~--------------a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGD--------------ALALLAQLKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHTTS-STTS
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHH--------------HHHHHHHHHHc-CCCC
Confidence 456666666656667777777777777777777777777776542 222 56666666666 5
Q ss_pred -ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCc-----cchHHHHHHHHh----cC
Q 047659 127 -KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKGF-----CVYEFLMNGLLR----KG 192 (619)
Q Consensus 127 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~----~~ 192 (619)
++++|+..|++..+.+ ++.++..+...|.. .+++++|+++|++..+.++ +.+..+..+|.. .+
T Consensus 67 ~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 6777777777776543 56666667777665 6667777777777766665 125666666665 55
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-C-----CcchHHHHHHHHHhCC
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-G-----QIGNASSLFDVLLLVG 243 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~A~~~~~~~~~~~ 243 (619)
++++|..++++..+. ..+...+..+...|... | ++++|...|+...+.|
T Consensus 144 d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666666666666655 22334455555555432 2 5566666666655543
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.06 E-value=2.3e-09 Score=110.64 Aligned_cols=153 Identities=11% Similarity=-0.026 Sum_probs=120.5
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.|++++|...|+++++.+|.+.. .+..++..|.+.|++++|++.|++.++..+. +...+..++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV--------------AWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRV 66 (568)
T ss_dssp -------------------CCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 58899999999999998887766 8899999999999999999999999997655 78899999999
Q ss_pred HHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---CCcc
Q 047659 157 LVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN---GQIG 230 (619)
Q Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~ 230 (619)
|...|++++|++.++++.+.+| +. +..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~ 145 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALD 145 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHH
Confidence 9999999999999999999888 33 8899999999999999999999999885 56678888999999999 9999
Q ss_pred hHHHHHHHHHhCCCC
Q 047659 231 NASSLFDVLLLVGPK 245 (619)
Q Consensus 231 ~A~~~~~~~~~~~~~ 245 (619)
+|.+.+++..+.++.
T Consensus 146 ~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 146 VLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999886543
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.06 E-value=4.9e-08 Score=90.85 Aligned_cols=178 Identities=9% Similarity=-0.034 Sum_probs=137.8
Q ss_pred HHHHHHHHc-cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccC-ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 36 NAILANLIK-TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSD-MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 36 ~~~~~~~~~-~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
...+....+ .+..++|+++++.++. |.+..+|.....++...| .+++++..++.++..+|++..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~------------ 124 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ------------ 124 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH------------
Confidence 333444444 4455789999999888 888888988888888888 599999999999999998877
Q ss_pred cccHHHHHHHHHHc-C-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHhhCCc-cc
Q 047659 112 GCDYSFLIENYVRI-G-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG--------QYYKLCRAMRGKGF-CV 180 (619)
Q Consensus 112 ~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~-~~ 180 (619)
+|+.-...+.+. + ++++++++++.+++.+++ |..+|+....++.+.+.++ ++++.++++++.++ +.
T Consensus 125 --aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~ 201 (349)
T 3q7a_A 125 --VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN 201 (349)
T ss_dssp --HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence 666666666666 6 888999999999988766 8888888777777766666 88888888888888 33
Q ss_pred --hHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 181 --YEFLMNGLLRKGV-------IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 181 --~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
|+.....+...+. ++++++.+.+++... +.|...|+.+-..+.+.|+.
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 7777666666665 678888888888775 67788888777777666654
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.2e-09 Score=87.10 Aligned_cols=103 Identities=8% Similarity=-0.068 Sum_probs=85.1
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.....+...+..+.+.|++++|+..|+++++.+|.+.. +|..++.+|.+.|++++|+..|+++++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI--------------LYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 344456677888888888888888888888888887766 788888888888888888888888888
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++.+|..++.++...|++++|++.|+++++.+|
T Consensus 76 ~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 76 LDSK-FIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 7655 778888888888888888888888888888777
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=4.3e-10 Score=101.03 Aligned_cols=199 Identities=8% Similarity=-0.131 Sum_probs=150.9
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHH-------HHHHHccCChhHHHHHHHHHHHhcCCchhHHHH-------HHhh
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQL-------IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL-------FRDS 107 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~ 107 (619)
..++++.|++.|..+.. |..+.+|..+ ..++.+.++..++...+.+.+...|......-. +.-.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 58999999999999998 9999999999 789999999999999999988866654331000 0000
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-----cchH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-----CVYE 182 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~ 182 (619)
....+.++..++..+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...+... +++.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 0011225677888999999999999999999875543 33 777778889999999999999987766532 2377
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 183 FLMNGLLRKGVIENAFHMHRQVIQRGFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888888899999999999998875432143 34566677778888889999999888887533
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=3.9e-07 Score=91.15 Aligned_cols=77 Identities=9% Similarity=0.032 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 047659 468 RATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFK 547 (619)
Q Consensus 468 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 547 (619)
+.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4666666666554431 1223334444555555666666666666652 134555555555555566666666555
Q ss_pred HHH
Q 047659 548 LME 550 (619)
Q Consensus 548 ~~~ 550 (619)
++.
T Consensus 409 ~~~ 411 (493)
T 2uy1_A 409 QKM 411 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=1.3e-07 Score=88.07 Aligned_cols=172 Identities=6% Similarity=-0.014 Sum_probs=133.3
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
...+..++|+..+++++..+|+... +|+.-...+...| .+++++.+++.++..+|+ +..+|+..
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~yt--------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR 129 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYT--------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHR 129 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3455667999999999999999887 7777777778888 599999999999998877 89999998
Q ss_pred HHHHHhc-C-ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 154 MSCLVDS-N-SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIE--------NAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 154 ~~~~~~~-~-~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
..++... + ++++++++++++++.+| +. |....-++...|.++ ++++.++++++.. +.|..+|+...
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 8888776 7 88999999999999998 33 555555555555555 8888888888876 67888888887
Q ss_pred HHHHhcCC-------cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 221 KRLCINGQ-------IGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 221 ~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.++.+.++ ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 77777765 46777777777765443 66777766666655554
No 120
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.99 E-value=3.3e-09 Score=90.75 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=105.2
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+...|++++|+..++.+.. |.+..++..++.++...|++++|...|++++..+|.+.. .+..++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~la 85 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE--------------LYAALA 85 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH--------------HHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--------------HHHHHH
Confidence 4568999999999998887 778899999999999999999999999999999887766 778888
Q ss_pred HH-HHHcCCh--hhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 120 EN-YVRIGKI--DESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 120 ~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+ +...|++ ++|+..|+.+++..+. ++..+..++.++...|++++|+..|+++.+..|
T Consensus 86 ~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 86 TVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 88 8899998 9999999999987654 788899999999999999999999999999888
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=3.6e-08 Score=86.82 Aligned_cols=175 Identities=11% Similarity=-0.008 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cchHHHHHHHHhcC----CHHHHHHHHHHH
Q 047659 130 ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKG----VIENAFHMHRQV 204 (619)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~----~~~~A~~~~~~~ 204 (619)
+|.+.|++..+.+ ++.++..+...|...+++++|+.+|++..+.+. +.+..+...|.. + ++++|.++++..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4666677776643 667777777777777777777777777766654 336666666665 5 677777777777
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCcchHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 047659 205 IQRGFVPNIVTCNKILKRLCI----NGQIGNASSLFDVLLLVGPK-PNVVTFSTLINAFCK----EAKLEKAFQLYNLMM 275 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 275 (619)
.+.| +...+..+...|.. .+++++|...|++..+.|+. .++..+..+...|.. .+++++|...|+...
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6654 55566666666655 56777777777777664331 125556666666666 666777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 047659 276 EMDLVPDLIIYSILIDGLFKA-G-----RLKEGNELLLTALDRG 313 (619)
Q Consensus 276 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 313 (619)
+. ..+...+..+...|... | +.++|...|+...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 65 12333455555555432 2 6677777777766665
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=2.7e-09 Score=98.79 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=123.5
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
.+...+..++..+...|++++|...|++++..+|.+.. ++..++.+|.+.|++++|+..++++++.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV--------------YYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567788888999999999999999999998887766 7888999999999999999999999887
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
.+. +...+..++.+|...|++++|+..|+++.+.+| + .+...+....+. ..+.... .......+.+......
T Consensus 68 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 68 DGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWN-SIEERRIHQESELHSY 142 (281)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHH-HHHHTCCCCCCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHH-HHHHHHHhhhHHHHHH
Confidence 654 788888899999999999999999988877666 2 122222222211 1111111 1222223444444433
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 047659 219 ILKRLCINGQIGNASSLFDVLLLVGPKPN-VVTFSTLINAFCKE-AKLEKAFQLYNLMME 276 (619)
Q Consensus 219 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~ 276 (619)
+... ..|+.++|.+.++...+. .|+ ......+...+.+. +.++++.++|..+.+
T Consensus 143 l~~l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 143 LTRL--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHH--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHH--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3222 246666776666666553 333 22222333333333 456667777766554
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=1.5e-08 Score=89.68 Aligned_cols=129 Identities=7% Similarity=-0.160 Sum_probs=103.4
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCccc
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCD 114 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (619)
+......+...|++++|+..|+.+. ++++.++..++.++...|++++|...|++++..+|.... +
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~ 73 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV--------------A 73 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH--------------H
Confidence 3455666778899999999999887 557788888999999999999999999999988777665 7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCC---------------CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYL---------------SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+..++.+|...|++++|+..|+++.+..+.. ....+..++.++.+.|++++|.+.|+++.+..|
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888899999999999999999988764431 126677777777788888888888877777766
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=1.5e-09 Score=89.33 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=65.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.++. .|..++.+|...|++++|+..|++++.
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR--------------FFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666665555 566666666666666666666666666
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+|. ++..+..+..+|...|++++|+..|+++.+..|
T Consensus 84 l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 84 MDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5443 556666666666666666666666666655444
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=2.4e-08 Score=93.90 Aligned_cols=127 Identities=8% Similarity=-0.049 Sum_probs=71.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC---C--
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY---L-- 145 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-- 145 (619)
+.++...|++++|...|.+++...+..-+. .....+|..++..|.+.|++++|+..|++.++.... +
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSL--------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456677788888888888777653321110 000116677777788888888888888777543111 1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
-..++..+..+|.. |++++|+..|++.++..+ ..+..+..++...|++++|+..++++++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12355666666666 777777777766554321 1144444444445555555554444443
No 126
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.92 E-value=3.3e-07 Score=84.97 Aligned_cols=175 Identities=6% Similarity=-0.044 Sum_probs=135.2
Q ss_pred HHHHHHHHccCCch-hHHHHHHHhhc--CCCCccHHHHHHHHHccCC----------hhHHHHHHHHHHHhcCCchhHHH
Q 047659 36 NAILANLIKTNNPT-PAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM----------RDVASHVFDKMVIQFGKTYNFFR 102 (619)
Q Consensus 36 ~~~~~~~~~~~~~~-~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 102 (619)
...+....+.|.+. +|+.+++.++. |.+..+|.....++...|. ++++...++.++..+|+++.
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~--- 109 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--- 109 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---
Confidence 34444445566665 89999999997 7788888877777766554 68999999999999999887
Q ss_pred HHHhhcCCCcccHHHHHHHHHHcCC--hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCc-
Q 047659 103 LFRDSLGDFGCDYSFLIENYVRIGK--IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS-VGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~- 178 (619)
+|..-..++.+.|+ +++++.+++.+++.++. |..+|+....++...|. ++++++.+.++++.+|
T Consensus 110 -----------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 110 -----------TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp -----------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred -----------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 77777777777774 78999999999998776 99999998888888888 5899999999999988
Q ss_pred cc--hHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047659 179 CV--YEFLMNGLLRK--------------GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN 226 (619)
Q Consensus 179 ~~--~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 226 (619)
+. |+.....+... +.++++++.+...+... +-|..+|+.+-..+.+.
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 33 66655555544 34677888888888775 67777787665555544
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=5.1e-09 Score=85.96 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+..+...+.+.|++++|+..|+.+.. |.++..|..++.++...|++++|...|++++..+|.++.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----------- 105 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----------- 105 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH-----------
Confidence 3566677788999999999999999998 889999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|.+.|++++|+..|+++++..+
T Consensus 106 ---~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 106 ---PVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998654
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1.7e-08 Score=85.01 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=64.7
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 82 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------ 82 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH------------
Confidence 344444445555556666665555554 445555555555555555555555555555555554443
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH--HHHHHHhcCChhHHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR--LMSCLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~ 172 (619)
++..++.++...|++++|...|+++.+..+. +...+.. .+..+.+.|++++|++.+..
T Consensus 83 --~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 83 --GYYRRAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4555555555555555555555555554332 3333322 22224445555555555444
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=2.3e-09 Score=102.03 Aligned_cols=161 Identities=8% Similarity=-0.090 Sum_probs=123.3
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHH-HHHhhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFR-LFRDSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 121 (619)
.+++++|++.++.... +.....+..++..+.+.|++++|...|++++...|.....-. .-....+....+|..++.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777665 667788999999999999999999999999999887631000 0000000001188899999
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHH-
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENA- 197 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A- 197 (619)
|.+.|++++|+..|+++++..+. ++.++..+..+|...|++++|+..|+++++..| +. +..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655 888999999999999999999999999988888 32 77788888888888877
Q ss_pred HHHHHHHHH
Q 047659 198 FHMHRQVIQ 206 (619)
Q Consensus 198 ~~~~~~~~~ 206 (619)
...+..|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555543
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=2.4e-08 Score=80.42 Aligned_cols=119 Identities=4% Similarity=-0.015 Sum_probs=85.2
Q ss_pred ccCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+.++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++..+|....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 85 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK------ 85 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH------
Confidence 334555667777777778888888888887776 566677777788888888888888888888777666554
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN 161 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 161 (619)
++..++.++.+.|++++|+..|++..+..+. +...+..+..++...|
T Consensus 86 --------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 --------GYTRKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6777777788888888888888877765443 4556666666665544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.86 E-value=4e-08 Score=82.73 Aligned_cols=126 Identities=6% Similarity=-0.089 Sum_probs=91.7
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.+.. ++..++..+...|++++|+..+++..+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI--------------YYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 45566777888888888888888888887776655 6778888888888888888888888776543
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--h--HHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--Y--EFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~--~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
++..+..++.++...|++++|+..|+++.+..| +. + ...+..+...|++++|.+.+....
T Consensus 80 -~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 677788888888888888888888888777766 22 3 223333556677777776666543
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=1e-09 Score=101.65 Aligned_cols=191 Identities=7% Similarity=-0.063 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+......+.+.|++++|+..|+.+.. |.+...+..++.++.+.|++++|...+++++..+|.+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------- 73 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK--------- 73 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------
Confidence 455677788888999999999999999987 788899999999999999999999999999999888776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMN 186 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~ 186 (619)
++..++.+|...|++++|+..|+++.+.++. +...+...+....+. ..+...........+ +. ....+.
T Consensus 74 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 74 -----AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8899999999999999999999999875432 111111111111111 111222222222333 33 222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCcchHHHHHHHHHh
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-GQIGNASSLFDVLLL 241 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~ 241 (619)
.+ ..|+.++|++.++...+.. +.+......+...+.+. +.+++|.++|..+.+
T Consensus 145 ~l-~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RL-IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HH-HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH-HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22 3689999999998888763 33344444444445554 668889999988765
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.1e-08 Score=83.56 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=67.5
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++..+.+.|++++|...|++++..+|.+.. .|..++.+|.+.|++++|+..|++++.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR--------------YFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344455566666666777777777777777766666555 566666667777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+|. ++..+..+..+|...|++++|+..|+++.+..|
T Consensus 81 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 81 MDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5544 556666666667777777777777666665554
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.83 E-value=3.1e-08 Score=84.59 Aligned_cols=120 Identities=8% Similarity=0.096 Sum_probs=98.2
Q ss_pred HHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 74 LLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 74 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
+...|++++|...+++++..+|.+.. ++..++..|...|++++|+..|+++.+..+. ++..+..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSE--------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 35678999999999999998887766 8889999999999999999999999887554 78888888
Q ss_pred HHH-HHhcCCh--hHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 154 MSC-LVDSNSV--GQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 154 ~~~-~~~~~~~--~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+.+ +...|++ ++|+..++++.+.+| +. +..+..++...|++++|...++.+++..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888 7788988 999999999988887 33 7778888888999999999998888874
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=2.4e-08 Score=78.78 Aligned_cols=97 Identities=8% Similarity=-0.106 Sum_probs=49.6
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 67 IAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
+..++..+.+.|++++|...|++++..+|.+.. +|..++.++.+.|++++|+..|+++++..|. +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~ 84 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE--------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK-D 84 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 444455555555555555555555555554444 4455555555555555555555555554333 4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 147 PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+..+..+..++...|++++|+..++++++.+|
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44555555555555555555555555544433
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.83 E-value=2.1e-08 Score=90.05 Aligned_cols=187 Identities=5% Similarity=-0.141 Sum_probs=117.4
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH-------HHHHHHcCChhhHHHHHHHHHhCCCCC---
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL-------IENYVRIGKIDESVEIFAYMSDMGIYL--- 145 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 145 (619)
+.++++.|.+.|.+++..+|...+ .|..+ ...+.+.++..+++..+++.+...+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~D--------------aw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACD--------------AWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhH--------------HHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 689999999999999999999988 77777 577777777888888887776632210
Q ss_pred --C---------------HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 146 --S---------------PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 146 --~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
+ .......+..+...|++++|.++|+.+...+| ++ ...+...+.+.+++++|+..|+....
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 0 22344466667777777777777777766666 32 44444456666666666666664433
Q ss_pred CCCCCC--hhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047659 207 RGFVPN--IVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMMEM 277 (619)
Q Consensus 207 ~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 277 (619)
.. .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 21 111 22455555666666666666666666653211132 223444555556666666666666666654
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=3.7e-08 Score=79.00 Aligned_cols=114 Identities=9% Similarity=-0.003 Sum_probs=63.4
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 81 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------------ 81 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH------------
Confidence 444444555556666666666665554 445555555666666666666666666666655554433
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS 162 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (619)
.+..++..+...|++++|...|+++.+..+. ++..+..+..++.+.|+
T Consensus 82 --~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 82 --AYGRMGLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 4555555666666666666666665554332 44555555555554444
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=1.1e-08 Score=84.06 Aligned_cols=109 Identities=11% Similarity=-0.021 Sum_probs=90.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh
Q 047659 85 HVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVG 164 (619)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (619)
..|++++..+|...+ .+..++..+.+.|++++|+..|+.++..++. ++..|..+..++...|+++
T Consensus 8 ~~~~~al~~~p~~~~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNEISSDTLE--------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTTCCHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHcCCHhhHH--------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHH
Confidence 345555555555444 7788899999999999999999999887655 8889999999999999999
Q ss_pred HHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 165 QYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 165 ~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
+|+..|++++..+| ++ +..+..++...|++++|.+.++.+++..
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999998888 33 8888889999999999999999888763
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=1.9e-07 Score=82.39 Aligned_cols=126 Identities=6% Similarity=-0.132 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
.+..++..+...|++++|+..|+++. .|++.++..++.++...|++++|+..|+++.+.+| +. +..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 46678888999999999999999883 55889999999999999999999999999998888 33 8889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCCcchHHHHHHHHHhCCC
Q 047659 191 KGVIENAFHMHRQVIQRGFVPNI----------------VTCNKILKRLCINGQIGNASSLFDVLLLVGP 244 (619)
Q Consensus 191 ~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 244 (619)
.|++++|.+.++.+.+.. +.+. ..+..+..++...|++++|.+.|+......+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 999999999999999864 2222 6778888888899999999999999887543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=3.5e-08 Score=79.48 Aligned_cols=115 Identities=8% Similarity=-0.055 Sum_probs=75.4
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+..++..++..+...|++++|...|++++..+|.+.. ++..++..+...|++++|+..++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK--------------LYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455666777777777777777777777776665544 666777777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHh
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLR 190 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~ 190 (619)
..+. +...+..++.++.+.|++++|+..|+++.+..| +. +..+..++..
T Consensus 79 ~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 79 LEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred hCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5443 566677777777777777777777777666655 22 4444444443
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.2e-08 Score=78.93 Aligned_cols=94 Identities=7% Similarity=-0.054 Sum_probs=51.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+......+.+.|++++|+..|+.+.. |.++..+..++.++.+.|++++|...+++++..+|....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 73 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR------------ 73 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH------------
Confidence 344444455555555555555555554 445555555555555555555555555555555554443
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++..++.++...|++++|+..|+++++.
T Consensus 74 --~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 74 --AYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=2.3e-06 Score=79.37 Aligned_cols=187 Identities=9% Similarity=-0.000 Sum_probs=135.1
Q ss_pred HHccCChh-HHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC----------hhhHHHHHHHHHhCC
Q 047659 74 LLQSDMRD-VASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK----------IDESVEIFAYMSDMG 142 (619)
Q Consensus 74 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~ 142 (619)
..+.|.++ +|...++.++..+|.... +|+.-...+...|. +++++.+++.++..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~yt--------------aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFAT--------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHH--------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 34566666 899999999999998877 44443333333332 678999999999987
Q ss_pred CCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhH
Q 047659 143 IYLSPDLVQRLMSCLVDSNS--VGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGV-IENAFHMHRQVIQRGFVPNIVTC 216 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~ 216 (619)
|+ +..+|+.-..++...++ +++++++++++.+.+| +. |+.-.-++...|. ++++++.+..+++.. +.|..+|
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW 182 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 182 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 76 99999998888888874 8899999999999998 33 7777677777787 589999999999986 7788888
Q ss_pred HHHHHHHHhc--------------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHH
Q 047659 217 NKILKRLCIN--------------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE-----------AKLEKAFQLY 271 (619)
Q Consensus 217 ~~ll~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 271 (619)
+.....+... +.++++++.++......|. |...|+-+-..+.+. +.++++++.+
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 8877766654 3356677777777765443 666666544444433 2345555555
Q ss_pred HHHHhC
Q 047659 272 NLMMEM 277 (619)
Q Consensus 272 ~~m~~~ 277 (619)
+++.+.
T Consensus 262 ~elle~ 267 (331)
T 3dss_A 262 KELQEL 267 (331)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555553
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.1e-08 Score=78.31 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=83.1
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+...+..+.+.|++++|...|++++..+|.+.. +|..++.+|.+.|++++|+..|+++++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--------------GYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 456777888888899999999999999888887766 788888889999999999999998888765
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 177 (619)
. ++..+..++.++...|++++|+..|+++.+.+
T Consensus 70 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 70 N-FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 5 67888888888888889888888888887765
No 144
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1e-07 Score=89.57 Aligned_cols=193 Identities=9% Similarity=-0.026 Sum_probs=117.0
Q ss_pred ccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHc-cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHH
Q 047659 44 KTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQ-SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIE 120 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (619)
..|++++|.++++.+.. +.. +.+ .+++++|...|+++. .
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a~----------------------------~ 44 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKAA----------------------------V 44 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHHH----------------------------H
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHHH----------------------------H
Confidence 45667777777777665 221 111 466777766666553 3
Q ss_pred HHHHcCChhhHHHHHHHHHhCCCCC-C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHH
Q 047659 121 NYVRIGKIDESVEIFAYMSDMGIYL-S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMN 186 (619)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~ 186 (619)
.|...|++++|...|+++.+..... + ..++..+..+|.+.|++++|+..|++.++... ..+..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667899999999998886542111 1 34677788888888999999888888654321 12556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC----CCC-hhhHHHHHH
Q 047659 187 GLLRKGVIENAFHMHRQVIQRGFVP-----NIVTCNKILKRLCINGQIGNASSLFDVLLLVGP----KPN-VVTFSTLIN 256 (619)
Q Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~ 256 (619)
+|.. |++++|++.+++.++..... ...++..+...|...|++++|...|++.....+ .+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777777777666541100 134455566666666666666666666554211 111 123444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047659 257 AFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~ 275 (619)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 5555566666666666665
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=3.2e-08 Score=86.66 Aligned_cols=158 Identities=9% Similarity=-0.126 Sum_probs=109.5
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
+...|++++|.+.++.+.. .....++..++.++...|++++|...+++++.......+ .+....++..++
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--------HTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC--------cHHHHHHHHHHH
Confidence 3568999999996655554 345677889999999999999999999999884221100 000111788999
Q ss_pred HHHHHcCChhhHHHHHHHHHhC---CC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cc------hHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDM---GI-YL--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CV------YEFL 184 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~------~~~l 184 (619)
..|...|++++|...+++..+. .. .+ ....+..+..++...|++++|...+++..+... +. +..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999999988764 11 11 234577888889999999999999888764321 11 4556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047659 185 MNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..++...|++++|.+.+++..+.
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH
Confidence 66666777777777666665543
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=4.1e-08 Score=78.73 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=70.0
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+...+..++..+...|++++|...|++++...|.... ++..++..+...|++++|+..++...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV--------------YFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH--------------HHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 3445556666666677777777777777666555444 56666666667777777777777666654
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG 192 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~ 192 (619)
+. ++..+..++.++...|++++|...++++.+..| +. +..+..++...|
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 77 PA-YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred cc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 33 456666666666666666666666666655554 21 444444444433
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=1.1e-08 Score=97.38 Aligned_cols=150 Identities=11% Similarity=-0.041 Sum_probs=111.5
Q ss_pred ccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC---------
Q 047659 76 QSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS--------- 146 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 146 (619)
..+++++|...++..+...|.... .+..++..|.+.|++++|+..|++++...+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~--------------~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 190 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQST--------------IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHH--------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 456677788777777766655544 788999999999999999999999998765532
Q ss_pred -----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047659 147 -----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNK 218 (619)
Q Consensus 147 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (619)
..++..+..+|.+.|++++|+..|+++++.+| ++ +..+..++...|++++|...|+++++.. +.+...+..
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~ 269 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQ 269 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 57778888888888888888888888877777 22 7777777777777777777777777764 455666667
Q ss_pred HHHHHHhcCCcchH-HHHHHHHH
Q 047659 219 ILKRLCINGQIGNA-SSLFDVLL 240 (619)
Q Consensus 219 ll~~~~~~~~~~~A-~~~~~~~~ 240 (619)
+..++...|+.++| ...+..|.
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776666 33444443
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=8.8e-08 Score=75.97 Aligned_cols=99 Identities=11% Similarity=0.061 Sum_probs=57.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...+++++...|.... ++..++..+.+.|++++|...|+++.+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 75 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence 34455555566666666666666666655554433 4555566666666666666666666554332
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..+..++.++...|++++|...++++.+..|
T Consensus 76 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 76 -NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 455555666666666666666666666555555
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.2e-07 Score=75.20 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=54.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
.+..+...+...|++++|++.|+.+.. |.+...+..++.++...|++++|...+++++...|....
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------ 78 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------ 78 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------
Confidence 334444444555555555555555544 444445555555555555555555555555554444333
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
++..++..+...|++++|...|+++.+..+. ++..+..+..++
T Consensus 79 --~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 121 (125)
T 1na0_A 79 --AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 121 (125)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4455555555555555555555555544332 344444444433
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=1.2e-08 Score=88.90 Aligned_cols=162 Identities=6% Similarity=-0.111 Sum_probs=105.4
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHH-HHhhcC-CCcccHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRL-FRDSLG-DFGCDYSF 117 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 117 (619)
....|+++.|.+.++.... +.....+..++..+...|++++|...|++++...|..++.... +..... -...++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 4446777777777775443 4566778889999999999999999999999977765410000 000000 00027788
Q ss_pred HHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCH
Q 047659 118 LIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVI 194 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~ 194 (619)
++.+|.+.|++++|+..++.+++..+. ++.++..++.+|...|++++|+..|+++.+..| +. +..+..++...++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999887544 778888888888889999999988888887777 22 66666666655555
Q ss_pred HHHH-HHHHHH
Q 047659 195 ENAF-HMHRQV 204 (619)
Q Consensus 195 ~~A~-~~~~~~ 204 (619)
.++. ..+..+
T Consensus 173 ~~~~~~~~~~~ 183 (198)
T 2fbn_A 173 RKKDKLTFGGM 183 (198)
T ss_dssp HC---------
T ss_pred HHHHHHHHHHH
Confidence 5554 333333
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=3.8e-08 Score=80.43 Aligned_cols=97 Identities=11% Similarity=-0.031 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+......+.+.|++++|+..|+.+.. |.++..|..++.++.+.|++++|...|++++..+|.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------- 87 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----------- 87 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-----------
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH-----------
Confidence 3556667778899999999999999987 888999999999999999999999999999999988777
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
.+..++.+|...|++++|+..|+.+++..+
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999987643
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.73 E-value=9.3e-08 Score=76.15 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=89.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDF 111 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (619)
....+...+.++|++++|++.|+.+.. |.++.++..++.++...|++++|+..+++++..+|........+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI------- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-------
Confidence 345677788999999999999999998 88899999999999999999999999999999876543311111
Q ss_pred cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHH
Q 047659 112 GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRL 153 (619)
Q Consensus 112 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 153 (619)
..+|..++.++...|++++|++.|++.+.. .|++.....+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 116788899999999999999999999874 4566654443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=2e-07 Score=72.97 Aligned_cols=98 Identities=12% Similarity=-0.050 Sum_probs=53.0
Q ss_pred cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 66 NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.+..++..+...|++++|...|++++..+|.+.. .+..++..+...|++++|...++++.+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 70 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV--------------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD- 70 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-
Confidence 3444555555555555555555555555554433 4555555555555555555555555554332
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 146 SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 146 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++..+..++.++...|++++|.+.+++..+.+|
T Consensus 71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 455555555555555555555555555555554
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=4e-08 Score=77.52 Aligned_cols=97 Identities=8% Similarity=-0.090 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
.........+.+.|++++|+..|+.+.. |.+..+|..++.++...|++++|+..|++++..+|....
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~----------- 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA----------- 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------
Confidence 3566777788899999999999999988 889999999999999999999999999999999998877
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
++..++.+|.+.|++++|+..|+++++..|
T Consensus 87 ---~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 87 ---VHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 889999999999999999999999987644
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=2e-07 Score=72.21 Aligned_cols=104 Identities=7% Similarity=-0.047 Sum_probs=82.7
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...+..++.++...|++++|...|++++..+|.... ++..++..+...|++++|+..|+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK--------------YWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677788888888888888888888888888776655 777888888888888888888888887
Q ss_pred CCCC-CCHHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCc
Q 047659 141 MGIY-LSPDLVQRLMSCLVDS-NSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~-~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~ 178 (619)
..+. .+...+..+..++... |++++|++.++++....|
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6432 1467788888888888 888888888888877665
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=2.3e-08 Score=87.23 Aligned_cols=150 Identities=10% Similarity=-0.042 Sum_probs=91.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC--
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS-- 146 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 146 (619)
..+......|.+++|.+.++......+.... .+..++..+.+.|++++|+..|++++...+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAF--------------DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 3444455566777777666655544333332 677888899999999999999999988654411
Q ss_pred -------------HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 147 -------------PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFV 210 (619)
Q Consensus 147 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 210 (619)
...+..+..+|.+.|++++|+..++++++..| +. +..+..++...|++++|.+.++.+++.. +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 153 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-P 153 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-C
Confidence 26677777777777777777777777777666 22 6666677777777777777777776663 3
Q ss_pred CChhhHHHHHHHHHhcCCcchHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNAS 233 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~ 233 (619)
.+...+..+..++...++.+++.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=1.4e-07 Score=79.20 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=75.7
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+.+.|++++|...|++++..+|.+.. +|..++.+|.+.|++++|+..|+++++..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 76 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI--------------YLSNRAAAYSASGQHEKAAEDAELATVVDP 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 445666777777888888888888888877776655 677777788888888888888888877654
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 144 YLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
. ++..|..+..+|...|++++|+..|+++++..|
T Consensus 77 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 77 K-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4 677777778888888888888888877777666
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=2e-07 Score=74.25 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.++..++..+.+.|++++|+..|+++++.+|.... +|..++.+|.+.|++++|++.|+..++..+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~--------------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT--------------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 45678899999999999999999999999988776 8899999999999999999999999875433
Q ss_pred C--C----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 L--S----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
. + ..++..+..++...|++++|++.|++.++..+
T Consensus 75 ~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1 1 13566667777777777777777777665444
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=6.9e-07 Score=83.27 Aligned_cols=168 Identities=5% Similarity=-0.089 Sum_probs=104.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+...+..+...|++++|...+++.+...+....... . ...+..++..+...|++++|+..++.+++...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ-F-------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH-H-------HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH-H-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344456677888899999999999988887654332100 0 00345577778888899999999988875432
Q ss_pred C---CC--HHhHHHHHHHHHhcCChhHHHHHHHHHhh---CCc-----c--chHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047659 144 Y---LS--PDLVQRLMSCLVDSNSVGQYYKLCRAMRG---KGF-----C--VYEFLMNGLLRKGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 144 ~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~-----~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 208 (619)
. +. ..+++.++..|...|++++|+..|+++.+ ..+ . ++..+..+|...|++++|...+++.++..
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2 11 34778888888888888888888888762 222 1 25556666666666666666666655431
Q ss_pred C----CC-ChhhHHHHHHHHHhcCCcchH-HHHHHHH
Q 047659 209 F----VP-NIVTCNKILKRLCINGQIGNA-SSLFDVL 239 (619)
Q Consensus 209 ~----~~-~~~~~~~ll~~~~~~~~~~~A-~~~~~~~ 239 (619)
. .. -..++..+...|...|++++| ...+++.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0 00 133455555555555666555 4444443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=3.5e-07 Score=71.54 Aligned_cols=108 Identities=12% Similarity=-0.027 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCC
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGD 110 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (619)
+.+..+...+...|++++|+..|+.+.. |.++..+..++.++...|++++|...+++++..+|....
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------- 73 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK----------- 73 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-----------
Confidence 3455556666667777777777776665 556666667777777777777777777777776665544
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMS 155 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 155 (619)
.+..++.++...|++++|...++...+.++. ++..+..+..
T Consensus 74 ---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 114 (118)
T 1elw_A 74 ---GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQN 114 (118)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 5666677777777777777777777665443 4444444443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.67 E-value=1.4e-07 Score=76.33 Aligned_cols=103 Identities=9% Similarity=0.009 Sum_probs=68.0
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.++..+..++..+...|++++|...|++++..+|.... ++..++.++...|++++|+..++.+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV--------------YYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344556666667777777777777777777776665544 666667777777777777777777766
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.++. ++..+..+..++...|++++|+..|+++.+..|
T Consensus 72 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 72 LDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 5443 566666677777777777777776666655433
No 162
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=6.7e-07 Score=83.35 Aligned_cols=164 Identities=7% Similarity=-0.096 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhc-CC-CCc------cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHN-CV-SSP------NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+...+..+...|++++|...++.+.. .+ .+. .+..++..+...|++++|...|++++...+...+..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~----- 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY----- 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT-----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH-----
Confidence 34456777889999999999999886 22 222 122477777888899999999999998544322210
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIYL-SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
....+++.++..|...|++++|+..|+.+++. +..+ ...++..++.+|.+.|++++|+..+++..+..+
T Consensus 153 ---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 153 ---QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 00015888999999999999999999998741 1111 234678888888889999999888887664321
Q ss_pred -------cchHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 047659 179 -------CVYEFLMNGLLRKGV-IENAFHMHRQVIQ 206 (619)
Q Consensus 179 -------~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 206 (619)
..+..+..++...|+ +++|.+.+++++.
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 125566666666663 4666666665543
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=5.7e-07 Score=71.81 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=66.1
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.+... ..++..++.++.+.|++++|+..|+.+.+..+.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-----------PNALYWLGESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 345566667777777777777777777766654410 015666677777777777777777777665443
Q ss_pred CC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 LS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 ~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+ +.++..++.++...|++++|+..|+++.+..|
T Consensus 72 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 72 -HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp -STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3 55566667777777777777777777666655
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=4.2e-07 Score=72.65 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhHHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNFFRLF 104 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ 104 (619)
+.+......+...|++++|+..|+.+.. |.++ .++..++.++...|++++|...|++++..+|.+ ..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----- 77 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG----- 77 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH-----
Confidence 3455667778899999999999999887 6566 588999999999999999999999999998876 33
Q ss_pred HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHH
Q 047659 105 RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQ 151 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 151 (619)
++..++.++.+.|++++|...|+.+.+..|. ++....
T Consensus 78 ---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 114 (129)
T 2xev_A 78 ---------GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG-SDAARV 114 (129)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHH
Confidence 7889999999999999999999999987544 444433
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=8.2e-07 Score=82.74 Aligned_cols=165 Identities=8% Similarity=-0.084 Sum_probs=124.2
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC------ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS------PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+...+..+...|++++|++.++.... +... ..+..++..+...|++++|...+++++...+...+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 152 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---- 152 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH----
Confidence 344567777899999999999998776 2222 1234577778899999999999999987544321100
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHH---hCCCC-C--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMS---DMGIY-L--SPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF- 178 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 178 (619)
....+++.++..|...|++++|+..|++++ +..+. + ...++..++.+|.+.|++++|+..+++..+...
T Consensus 153 ----~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 153 ----QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 001178899999999999999999999997 32221 1 125888999999999999999999998765422
Q ss_pred --------cchHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 047659 179 --------CVYEFLMNGLLRKGVIENA-FHMHRQVIQ 206 (619)
Q Consensus 179 --------~~~~~l~~~~~~~~~~~~A-~~~~~~~~~ 206 (619)
..+..+..++...|++++| ...++....
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1278889999999999999 777777654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=1.5e-07 Score=79.11 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=91.4
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+++.+..+...+.+.|++++|+..|+.+.. |.+...+..++.++.+.|++++|+..|++++..+|....
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------- 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK--------- 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------
Confidence 455677888888999999999999999998 888899999999999999999999999999999988776
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
+|..++.+|...|++++|+..|++.++..+.
T Consensus 81 -----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 81 -----AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred -----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999886554
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=5e-08 Score=97.07 Aligned_cols=160 Identities=8% Similarity=-0.063 Sum_probs=119.7
Q ss_pred cCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH-hhcCCCcccHHHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR-DSLGDFGCDYSFLIEN 121 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 121 (619)
.+++++|++.|+.... +.....+..++..+.+.|++++|...|++++...|.......... ...+....+|..++.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777766554 566778899999999999999999999999998887631000000 0000001178899999
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~ 198 (619)
|.+.|++++|+..|+++++..+. ++.++..+..+|...|++++|+..|+++++..| + .+..+..++...++.+++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987655 788999999999999999999999999999888 2 2888888888888877665
Q ss_pred H-HHHHHH
Q 047659 199 H-MHRQVI 205 (619)
Q Consensus 199 ~-~~~~~~ 205 (619)
+ .+..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 344443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=1.8e-07 Score=75.80 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=91.5
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
+.++..+..+...+...|++++|+..|+.+.. |.++..+..++.++...|++++|...+++++..+|....
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 78 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------- 78 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH-------
Confidence 34677888899999999999999999999887 888899999999999999999999999999999888766
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++..++.+|...|++++|+..|+.+++..
T Consensus 79 -------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 79 -------AHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 88999999999999999999999998754
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=1.2e-06 Score=81.67 Aligned_cols=162 Identities=6% Similarity=-0.085 Sum_probs=100.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC-CC--
Q 047659 70 LIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY-LS-- 146 (619)
Q Consensus 70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 146 (619)
.+..+...|++++|...++++....+..++.. .+. ..+..++..+...|++++|+..|+.+++.... ++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~-~~~-------~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ-QFL-------QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH-HHH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHH-HHH-------HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 46677889999999999999988655544310 000 03445777777888999999999999874322 22
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHhhC------Cc----cchHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC
Q 047659 147 --PDLVQRLMSCLVDSNSVGQYYKLCRAMRGK------GF----CVYEFLMNGLLRKGVIENAFHMHRQVIQRG----FV 210 (619)
Q Consensus 147 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~ 210 (619)
..+++.++.+|...|++++|+..|+++.+. .. .++..+..+|...|++++|...+++.++.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 236788888888888888888888887631 11 125555666666666666666655554431 01
Q ss_pred CC-hhhHHHHHHHHHhcCC-cchHHHHHHHH
Q 047659 211 PN-IVTCNKILKRLCINGQ-IGNASSLFDVL 239 (619)
Q Consensus 211 ~~-~~~~~~ll~~~~~~~~-~~~A~~~~~~~ 239 (619)
+. ..++..+..++.+.|+ +++|.+.+++.
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 3344445555555553 25555555444
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7e-07 Score=73.27 Aligned_cols=111 Identities=12% Similarity=0.036 Sum_probs=71.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
+...+......+...|++++|++.|+.+.. |.+ ...+..++.++...|++++|...+++++..+|....
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK------ 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH------
Confidence 444556666666777777777777777665 322 566666777777777777777777777776665544
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC 156 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (619)
.+..++.+|...|++++|...|++..+..+. +...+..+..+
T Consensus 101 --------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 101 --------ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 5666777777777777777777777665433 45555444443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=2.4e-07 Score=71.72 Aligned_cols=100 Identities=12% Similarity=-0.055 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC--chhHHHHHHh
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK--TYNFFRLFRD 106 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~ 106 (619)
++..+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|. ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 77 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD------- 77 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-------
Confidence 344556677778899999999999999887 778889999999999999999999999999998887 655
Q ss_pred hcCCCcccHHHHHHHHHHc-CChhhHHHHHHHHHhCCCC
Q 047659 107 SLGDFGCDYSFLIENYVRI-GKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 144 (619)
++..++.++.+. |++++|++.++.+....+.
T Consensus 78 -------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 78 -------VWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp -------HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred -------HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 889999999999 9999999999999987654
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=7.3e-07 Score=77.82 Aligned_cols=152 Identities=9% Similarity=-0.093 Sum_probs=84.6
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh------CCc---cchHHHHHHHHhcCC
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG------KGF---CVYEFLMNGLLRKGV 193 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~~~ 193 (619)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++... ..+ ..+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457889999986655544 2334567788888888899999999988888765 111 115566666666677
Q ss_pred HHHHHHHHHHHHHC----CCC--CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCC---CCC--hhhHHHHHHHHHhcC
Q 047659 194 IENAFHMHRQVIQR----GFV--PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGP---KPN--VVTFSTLINAFCKEA 262 (619)
Q Consensus 194 ~~~A~~~~~~~~~~----~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~ 262 (619)
+++|.+.+++..+. +.. .....+..+...+...|++++|...+++...... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 76666666665543 100 1123344555555556666666666555442100 000 122344444555555
Q ss_pred CHHHHHHHHHHHH
Q 047659 263 KLEKAFQLYNLMM 275 (619)
Q Consensus 263 ~~~~a~~~~~~m~ 275 (619)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7.2e-07 Score=73.19 Aligned_cols=106 Identities=7% Similarity=-0.131 Sum_probs=88.2
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+.+...+..++..+...|++++|...|++++...|.+... ..++..++..|...|++++|+..++...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ-----------AVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHH-----------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 4566777888999999999999999999999887765110 01788889999999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 141 MGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
..+. ++..+..+..++...|++++|...|+++.+..|
T Consensus 94 ~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 94 KDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred hCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7544 688888899999999999999999999888776
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=2.4e-07 Score=74.13 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=66.9
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..++..+...|++++|...|++++..+|.... ++..++..|...|++++|...++++....+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------------YITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--------------HHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 45566777777777777777777777777665544 6677777777777777777777777664332
Q ss_pred --CC----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 145 --LS----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 145 --~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++ ..++..++.++...|++++|.+.|+++.+..+
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 11 55566666666666776666666666655544
No 175
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=2.3e-06 Score=87.00 Aligned_cols=178 Identities=6% Similarity=-0.059 Sum_probs=148.1
Q ss_pred HHHHHHccC-CchhHHHHHHHhhc--CCCCccHHHHHHHHHccCC----------hhHHHHHHHHHHHhcCCchhHHHHH
Q 047659 38 ILANLIKTN-NPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDM----------RDVASHVFDKMVIQFGKTYNFFRLF 104 (619)
Q Consensus 38 ~~~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 104 (619)
.+....+.| ..++|++.++.+.. |.+..+|.....++...|+ +++|.+.+++++..+|+++.
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~----- 108 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----- 108 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-----
Confidence 333444445 45688999999998 8888999999999888888 99999999999999999888
Q ss_pred HhhcCCCcccHHHHHHHHHHcC--ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCc-cc
Q 047659 105 RDSLGDFGCDYSFLIENYVRIG--KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN-SVGQYYKLCRAMRGKGF-CV 180 (619)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~-~~ 180 (619)
+|..-..++.+.| +++++++.++++++.++. +..+|+....++.+.| .++++++.+.++++.+| +.
T Consensus 109 ---------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 109 ---------TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp ---------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred ---------HHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 7788888888889 669999999999998776 9999999999999989 89999999999999999 33
Q ss_pred --hHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 181 --YEFLMNGLLRK--------------GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 181 --~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
|......+... +.++++++.+..++... +-+..+|+.+-..+.+.++.++
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 66666666553 55788999999988876 6778889888888877776544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=4.9e-07 Score=72.29 Aligned_cols=117 Identities=9% Similarity=0.140 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|+..|+.+.. |.+...+..++.++...|++++|...+++++...|.......
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR------- 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH-------
Confidence 34566777788899999999999999887 778888999999999999999999999999998665411000
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
....++..++.++...|++++|...|+.+.+.. |++..+..+..+.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 001278899999999999999999999999864 4666666655554
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=2.3e-07 Score=92.62 Aligned_cols=117 Identities=6% Similarity=-0.094 Sum_probs=59.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhH
Q 047659 71 IHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLV 150 (619)
Q Consensus 71 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 150 (619)
+..+.+.|++++|...|+++++.+|.... ++..++.+|.+.|++++|+..++++++..+. ++.++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~ 77 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAI--------------YYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGY 77 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33444555555555555555555554443 5555555555555555555555555555433 45555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH--HHhcCCHHHHHHHHH
Q 047659 151 QRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG--LLRKGVIENAFHMHR 202 (619)
Q Consensus 151 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~--~~~~~~~~~A~~~~~ 202 (619)
..++.+|.+.|++++|++.|+++.+..| +. +..+..+ +...|++++|++.++
T Consensus 78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555555555555555555555544 11 3333333 444555555555554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=1.1e-07 Score=94.91 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=98.8
Q ss_pred HHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL 118 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (619)
.+.+.|++++|++.|+.+.. |.+..++..++.++.+.|++++|...++++++.+|.... ++..+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--------------~~~~l 80 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK--------------GYYRR 80 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--------------HHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--------------HHHHH
Confidence 35679999999999999988 888899999999999999999999999999999888766 88999
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSC--LVDSNSVGQYYKLCR 171 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 171 (619)
+.+|.+.|++++|++.|+++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 81 g~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999987654 45566666666 888999999999998
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=2.4e-07 Score=72.60 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=50.1
Q ss_pred cCCchhHHHHHHHhhc-----CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 45 TNNPTPAIQFFKWTHN-----CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 45 ~~~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.|++++|+..|+.+.. |.+..++..++.++...|++++|...|++++..+|.+.. ++..++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~l~ 68 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA--------------LRVFYA 68 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH--------------HHHHHH
Confidence 4566666666666654 223345566666666666666666666666666665554 556666
Q ss_pred HHHHHcCChhhHHHHHHHHHhCC
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
.++.+.|++++|+..|++.+...
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666543
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=9.6e-07 Score=73.86 Aligned_cols=109 Identities=9% Similarity=0.003 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhc--------CCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHH
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQF--------GKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 136 (619)
..+...+..+.+.|++++|...|++++... |...+. ...-|....+|..++.+|.+.|++++|+..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW----VELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH----HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456677888889999999999999988861 211110 00011112278888889999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 137 YMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+++.++. ++.++..++.+|...|++++|+..|+++++.+|
T Consensus 88 ~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 88 EVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 99887654 788888888889889999999888888887776
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=3.4e-07 Score=71.70 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=65.3
Q ss_pred ccCChhHHHHHHHHHHHh---cCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHH
Q 047659 76 QSDMRDVASHVFDKMVIQ---FGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQR 152 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 152 (619)
..|++++|+..|++++.. +|.... ++..++.+|.+.|++++|+..|+++++..|. ++.++..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~--------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAE--------------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 467888888888888876 344333 7788888888888888888888888887655 6778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++.++...|++++|+..+++.+...|
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888777655
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=1.4e-06 Score=70.44 Aligned_cols=111 Identities=11% Similarity=-0.147 Sum_probs=85.3
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC---
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--- 141 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 141 (619)
..+...+..+...|++++|...|++++..+|..++.- .+ ...|.....|..++.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-a~-~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-AF-DHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-CC-CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-hh-hhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3456677888889999999999999999888732200 00 000001118899999999999999999999999986
Q ss_pred ----CCCCCHHhH----HHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 142 ----GIYLSPDLV----QRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 142 ----~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
+|. +...| .....++...|++++|+..|++.++..|
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 554 66788 8999999999999999999999887766
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.38 E-value=1.7e-06 Score=85.99 Aligned_cols=125 Identities=9% Similarity=-0.013 Sum_probs=106.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCC---------------CccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVS---------------SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
.+......+.+.|++++|+..|+.+.. |.+ ..++..++.++.+.|++++|+..+++++..+|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 566677788899999999999999988 555 478899999999999999999999999999988
Q ss_pred chhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH-HHHHH
Q 047659 97 TYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYK-LCRAM 173 (619)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~ 173 (619)
+.. +|..++.+|...|++++|+..|+++++..+. +..++..+..++.+.++++++.. .+..|
T Consensus 350 ~~~--------------a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 350 NEK--------------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 8899999999999999999999999997654 67788889999988888887764 44444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=2.2e-06 Score=82.34 Aligned_cols=133 Identities=5% Similarity=-0.120 Sum_probs=94.0
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhH--HHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNF--FRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
..+..++..+.+.|++++|...|++++...+..... ........|....+|..++.+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346788899999999999999999999832221000 000000011112278888999999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHH
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAF 198 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~ 198 (619)
+. ++.++..+..+|...|++++|+..|+++.+..| +. +..+..++...++.+++.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 788888888999999999999999988888777 22 555566665555555544
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.36 E-value=2.7e-06 Score=68.77 Aligned_cols=96 Identities=15% Similarity=-0.026 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CC-------CCc-----cHHHHHHHHHccCChhHHHHHHHHHHHh-----
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CV-------SSP-----NIAQLIHVLLQSDMRDVASHVFDKMVIQ----- 93 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 93 (619)
+.+......+.+.|++++|+..|+.++. |. +.. .|..++.++...|++++|+..+++++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4567777888899999999999999998 54 222 8999999999999999999999999999
Q ss_pred --cCCchhHHHHHHhhcCCCcccH----HHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 94 --FGKTYNFFRLFRDSLGDFGCDY----SFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
+|+... +| ...+.++...|++++|+..|++.++..
T Consensus 92 e~~pd~~~--------------A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGK--------------LWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHH--------------HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 887666 77 999999999999999999999998753
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=7.6e-07 Score=84.59 Aligned_cols=137 Identities=8% Similarity=0.015 Sum_probs=77.2
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh---------HHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHH
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN---------FFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEI 134 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 134 (619)
...+..++..+.+.|++++|...|++++...|.... ....+.. .+|..++.+|.+.|++++|+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~------~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKN------PCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHT------HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHH------HHHHHHHHHHHHcCCHHHHHHH
Confidence 344566667777777777777777777776665431 0011111 1678888889999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 047659 135 FAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNG-LLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~-~~~~~~~~~A~~~~~~~~~~ 207 (619)
|+++++..+. +..++..+..+|...|++++|+..|+++++..| +. +..+..+ ....+..+.+...+..+...
T Consensus 253 ~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 253 CNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9998887554 788888899999999999999999999888877 22 5555544 33456677788888888765
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=6.7e-06 Score=81.48 Aligned_cols=166 Identities=7% Similarity=-0.069 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCc-----------------cHHHHHHHHHccCChhHHHHHHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSP-----------------NIAQLIHVLLQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 92 (619)
|.....-...+.+.|++++|++.|..+.. +.... ++..++.+|...|++++|.+.+.++..
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445566778889999999999998886 22221 266788899999999999999988877
Q ss_pred hcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHhcCChhHHH
Q 047659 93 QFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM----GIYL-SPDLVQRLMSCLVDSNSVGQYY 167 (619)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~ 167 (619)
..+...... .. ..+...+...+...|+++.|..+++..... +..+ -..++..++..|...|++++|.
T Consensus 84 ~~~~~~~~~---~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 84 YMMQFAKSK---TV-----KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHTSCHHH---HH-----HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHccchH---HH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 544322210 00 003444555555678888888888777532 1122 2345667777888888888888
Q ss_pred HHHHHHhhCC------c---cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 168 KLCRAMRGKG------F---CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 168 ~~~~~~~~~~------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
.++..+...- + +.+..+++.|...|++++|...++...
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7777654321 0 115555555555555555555555443
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=8.5e-06 Score=80.75 Aligned_cols=177 Identities=8% Similarity=-0.031 Sum_probs=103.9
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHH---HhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLF---RDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.+...-++.+...|++++|.+.|.++++..+...+..... ....+....++..++..|...|++++|.+.+..+.+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455667888899999999999999999877654421000 000000111477889999999999999999988765
Q ss_pred CCCCCC-H----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 141 MGIYLS-P----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 141 ~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
.....+ . .+.+.+...+...|+++.|..++........ ..+..++..+...|++++|..++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 322211 1 1223344444566788888888777653211 1145556666666666666666665544
Q ss_pred CCC-----CCChhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 047659 207 RGF-----VPNIVTCNKILKRLCINGQIGNASSLFDVLL 240 (619)
Q Consensus 207 ~~~-----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 240 (619)
.-. +....++..++..|...|++++|...+++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 310 1112344455555555555555555555443
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.7e-06 Score=82.22 Aligned_cols=95 Identities=6% Similarity=-0.008 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-H
Q 047659 148 DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKR-L 223 (619)
Q Consensus 148 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~ 223 (619)
.++..+..+|.+.|++++|+..|+++++.+| +. +..+..++...|++++|...|+.+++.. +.+...+..+... .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3788899999999999999999999999888 33 8999999999999999999999998774 3455566666555 3
Q ss_pred HhcCCcchHHHHHHHHHhCC
Q 047659 224 CINGQIGNASSLFDVLLLVG 243 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~ 243 (619)
...+..+.+...|..+....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 34567788889999887653
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=2.1e-06 Score=71.69 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=89.8
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--------------------CCCCccHHHHHHHHHccCChhHHHHHHHHHH
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--------------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMV 91 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 91 (619)
.+.+......+.+.|++++|+..|+.+.. +.....+..++.++.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34667788888999999999999998775 1123577889999999999999999999999
Q ss_pred HhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH-HhHHHHH
Q 047659 92 IQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP-DLVQRLM 154 (619)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 154 (619)
..+|.+.. +|..++.+|...|++++|+..|+..+...|. ++ .....+.
T Consensus 91 ~~~p~~~~--------------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~ 139 (162)
T 3rkv_A 91 KREETNEK--------------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMK 139 (162)
T ss_dssp HHSTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred hcCCcchH--------------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 99988777 8899999999999999999999999987554 44 3333333
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.28 E-value=1.4e-05 Score=81.14 Aligned_cols=170 Identities=6% Similarity=-0.007 Sum_probs=136.4
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCC----------hhhHHHHHHHHHhCCCCCC
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGK----------IDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~ 146 (619)
....++|...+++++..+|+... +|+.-..++...|+ +++++++++.+++.+++ +
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~t--------------aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~ 106 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFAT--------------LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-S 106 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred CCCCHHHHHHHHHHHHHCchhHH--------------HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 34456889999999999999887 67777777777777 89999999999998877 9
Q ss_pred HHhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCc-cc--hHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047659 147 PDLVQRLMSCLVDSN--SVGQYYKLCRAMRGKGF-CV--YEFLMNGLLRKG-VIENAFHMHRQVIQRGFVPNIVTCNKIL 220 (619)
Q Consensus 147 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll 220 (619)
..+|+.-..++.+.+ +++++++.++++.+.++ +. |....-.+...| .++++++.+..+++.. +.|..+|+...
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~ 185 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 185 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHH
Confidence 999999999999999 66999999999999998 33 777777777888 8999999999999886 77888898887
Q ss_pred HHHHhc--------------CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047659 221 KRLCIN--------------GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAK 263 (619)
Q Consensus 221 ~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 263 (619)
.++.+. +.++++.+.+++.....+. |...|+.+-..+.+.+.
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 777663 3456777777777765443 56667766666666555
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=2.8e-06 Score=81.55 Aligned_cols=120 Identities=9% Similarity=-0.014 Sum_probs=102.9
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc------------------CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcC
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN------------------CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFG 95 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 95 (619)
.+..+...+.+.|++++|+..|+.+.. +.....+..++.++.+.|++++|+..+++++..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 356667778889999999999998874 34457788999999999999999999999999988
Q ss_pred CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 047659 96 KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYK 168 (619)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 168 (619)
.+.. ++..++.+|...|++++|+..|+++++..+. +...+..+..++...++.+++.+
T Consensus 305 ~~~~--------------a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTK--------------ALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 8899999999999999999999999987655 78888888888887777776654
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.26 E-value=6.7e-06 Score=68.40 Aligned_cols=133 Identities=11% Similarity=-0.026 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 65 PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 65 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
.++..++..+...|++++|...+++++...+...+.. ....++..++..+...|++++|...++...+....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888877543221100 00116777888888888888888888887653211
Q ss_pred -CC----HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---------cchHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 145 -LS----PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---------CVYEFLMNGLLRKGVIENAFHMHRQVI 205 (619)
Q Consensus 145 -~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 205 (619)
++ ...+..+..++...|++++|.+.+++..+... ..+..+...+...|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11 34566677777778888888877777653211 014444445555555555555555444
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.1e-07 Score=68.65 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++..+|.+.. ++..++.++.+.|++++|+..|+++++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV--------------GYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 456677888888888888888888888888777665 778888888888888888888888887654
Q ss_pred CCC------HHhHHHHHHHHHhcCChhHHHHHHHH
Q 047659 144 YLS------PDLVQRLMSCLVDSNSVGQYYKLCRA 172 (619)
Q Consensus 144 ~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 172 (619)
. + ...+..+..++...|+++.|+..+++
T Consensus 70 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 T-AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp S-TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred C-ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 4 3 55566666666666666665554433
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=7e-06 Score=68.28 Aligned_cols=134 Identities=7% Similarity=-0.082 Sum_probs=102.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCC------ccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHH
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSS------PNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFR 105 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 105 (619)
.+..+...+...|++++|+..++.+.. +... .++..++.++...|++++|...+++++...+...+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 85 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----- 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----
Confidence 456667777889999999999999887 2211 367789999999999999999999998754332110
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC----C-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI----Y-LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
+....++..++..+...|++++|...+++..+... . ....++..+..++...|++++|.+.+++..+
T Consensus 86 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 86 ---AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00011788899999999999999999999875311 1 1235677888999999999999999988764
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=3.9e-06 Score=65.31 Aligned_cols=79 Identities=6% Similarity=-0.131 Sum_probs=59.4
Q ss_pred hhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcC
Q 047659 49 TPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIG 126 (619)
Q Consensus 49 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 126 (619)
..|+..|+.+.. |.++..+..++.++...|++++|...|++++..+|.... +|..++.+|...|
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~la~~~~~~g 67 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV--------------AWKWLGKTLQGQG 67 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHcC
Confidence 356677777665 666777778888888888888888888888877776655 6777778888888
Q ss_pred ChhhHHHHHHHHHhC
Q 047659 127 KIDESVEIFAYMSDM 141 (619)
Q Consensus 127 ~~~~A~~~~~~~~~~ 141 (619)
++++|...|++..+.
T Consensus 68 ~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 68 DRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877654
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=2.1e-06 Score=69.28 Aligned_cols=88 Identities=15% Similarity=0.036 Sum_probs=76.0
Q ss_pred HHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCCh----------hHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 42 LIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMR----------DVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
..+.+.+++|++.++.+.. |.++++|..++.++...|++ ++|+..|+++++.+|+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------- 81 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------- 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH----------
Confidence 3445678899999999887 99999999999999988876 4999999999999999887
Q ss_pred CCcccHHHHHHHHHHcC-----------ChhhHHHHHHHHHhCCC
Q 047659 110 DFGCDYSFLIENYVRIG-----------KIDESVEIFAYMSDMGI 143 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 143 (619)
+|..++.+|...| ++++|++.|+++++.+|
T Consensus 82 ----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 82 ----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 8899999999875 78888888888888544
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.14 E-value=9.3e-06 Score=59.78 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=55.6
Q ss_pred CccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCC
Q 047659 64 SPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGI 143 (619)
Q Consensus 64 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 143 (619)
...+..++..+...|++++|...|++++...|.... ++..++.++.+.|++++|+..|++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------AWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 345666777777777777777777777777666554 666777777777777777777777776544
Q ss_pred CCCHHhHHHHHHHHHh
Q 047659 144 YLSPDLVQRLMSCLVD 159 (619)
Q Consensus 144 ~~~~~~~~~l~~~~~~ 159 (619)
. ++..+..+..++.+
T Consensus 75 ~-~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 N-NAEAKQNLGNAKQK 89 (91)
T ss_dssp T-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHh
Confidence 3 56666666666544
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=5.9e-06 Score=66.63 Aligned_cols=90 Identities=3% Similarity=-0.107 Sum_probs=77.0
Q ss_pred HccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCCh----------hhHHHHHHHHHhCCCC
Q 047659 75 LQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKI----------DESVEIFAYMSDMGIY 144 (619)
Q Consensus 75 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~ 144 (619)
.+.+.+++|.+.+++++..+|...+ .|..++.++...|++ ++|+..|++.++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~ae--------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDAD--------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHH--------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 4567899999999999999999888 788888899988775 4999999999998766
Q ss_pred CCHHhHHHHHHHHHhcC-----------ChhHHHHHHHHHhhCCcc
Q 047659 145 LSPDLVQRLMSCLVDSN-----------SVGQYYKLCRAMRGKGFC 179 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~ 179 (619)
+..+|..+..+|...| ++++|++.|+++++.+|+
T Consensus 79 -~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 79 -KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 7889999999998764 788888888888888873
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=1.1e-05 Score=62.60 Aligned_cols=83 Identities=10% Similarity=-0.048 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 047659 81 DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDS 160 (619)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 160 (619)
++|...|++++..+|.+.. .+..++..|...|++++|+..|+++++..+. +...|..+..+|...
T Consensus 2 ~~a~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML--------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHc
Confidence 4678888888888777665 7888999999999999999999999887654 678888899999999
Q ss_pred CChhHHHHHHHHHhhCCc
Q 047659 161 NSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 161 ~~~~~A~~~~~~~~~~~~ 178 (619)
|++++|+..|+++.+..|
T Consensus 67 g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999988876544
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=9.1e-06 Score=61.21 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
|.++.++..++.++...|++++|+..|+++++.+|.... +|..++.+|...|++++|+..|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG--------------TYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777888888888888888888888888888777665 778888888888888888888888765
Q ss_pred CCCC-CCHHhHHHHHHHHH
Q 047659 141 MGIY-LSPDLVQRLMSCLV 158 (619)
Q Consensus 141 ~~~~-~~~~~~~~l~~~~~ 158 (619)
..+. ++......+...+.
T Consensus 70 l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 70 VAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHSCHHHHHHHHHHHH
T ss_pred hhhcCCchhHHHHHHHHHH
Confidence 4221 24444444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.03 E-value=6.4e-05 Score=60.43 Aligned_cols=110 Identities=14% Similarity=0.015 Sum_probs=64.1
Q ss_pred CchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH--
Q 047659 47 NPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR-- 124 (619)
Q Consensus 47 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 124 (619)
++++|++.|+.+.+..++.+. ++.++...+..++|...|+++.+.+ ++. ++..|...|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~--------------a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN--SGN--------------GCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--CHH--------------HHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CHH--------------HHHHHHHHHHcCC
Confidence 455666666666554444444 6666666666666666666666541 112 55566666666
Q ss_pred --cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCC
Q 047659 125 --IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVD----SNSVGQYYKLCRAMRGKG 177 (619)
Q Consensus 125 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 177 (619)
.+++++|...|++..+.+ ++.++..+...|.. .+++++|+.+|++..+.+
T Consensus 72 g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 566666666666666543 45566666666655 556666666666655544
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.96 E-value=4e-06 Score=64.61 Aligned_cols=99 Identities=9% Similarity=-0.053 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
++.+..+...+...|++++|++.|+.+.. |.++..+..++.++...|++++|...+++++..+|.+.+... +
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~----- 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-R----- 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH-H-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH-H-----
Confidence 45667778888999999999999999988 888899999999999999999999999999998887611000 0
Q ss_pred CCcccHHHHHHHHHHcCChhhHHHHHHHH
Q 047659 110 DFGCDYSFLIENYVRIGKIDESVEIFAYM 138 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 138 (619)
..++..++.++...|+++.|+..++++
T Consensus 78 --~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 --SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp --HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred --HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 116778888888888888887776654
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.93 E-value=3.9e-05 Score=75.94 Aligned_cols=124 Identities=14% Similarity=0.005 Sum_probs=92.4
Q ss_pred HHHccCCchhHHHHHHHhhc-------CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHh-----cCCchhHHHHHH
Q 047659 41 NLIKTNNPTPAIQFFKWTHN-------CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQ-----FGKTYNFFRLFR 105 (619)
Q Consensus 41 ~~~~~~~~~~A~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~ 105 (619)
.+..+|++++|+.+++.++. +.+ ..++..++.+|..+|++++|..++++++.. +++.++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~------ 391 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ------ 391 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH------
Confidence 45679999999999998876 333 355678999999999999999999999875 222222
Q ss_pred hhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh-----CCCC-CCH-HhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 106 DSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD-----MGIY-LSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
...+++.|+..|..+|++++|+.+++++++ .|+. |+. .+...+..++...+.+++|..+|.++.+
T Consensus 392 -----~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 -----LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222899999999999999999999998864 2433 122 2345566667777778888887777654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.92 E-value=3.6e-05 Score=56.50 Aligned_cols=81 Identities=11% Similarity=0.002 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
+..+..+...+...|++++|+..|+.+.. |.+...+..++.++.+.|++++|...+++++..+|....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------- 78 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------- 78 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH----------
Confidence 44566777788899999999999999987 778889999999999999999999999999999887766
Q ss_pred CCcccHHHHHHHHHHcC
Q 047659 110 DFGCDYSFLIENYVRIG 126 (619)
Q Consensus 110 ~~~~~~~~l~~~~~~~g 126 (619)
++..+..++.+.|
T Consensus 79 ----~~~~l~~~~~~~g 91 (91)
T 1na3_A 79 ----AKQNLGNAKQKQG 91 (91)
T ss_dssp ----HHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhcC
Confidence 6667777666543
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=0.00014 Score=72.01 Aligned_cols=97 Identities=8% Similarity=-0.126 Sum_probs=71.2
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCC-C
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIY-L 145 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~ 145 (619)
..+..+|++++|+.++++++........ ..-|....+++.|+.+|..+|++++|..+++++++. |+. |
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFA------DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBC------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3456899999999999999886332110 000111128899999999999999999999988642 332 2
Q ss_pred C-HHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 146 S-PDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 146 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+ ..+++.++.+|..+|++++|..+++++.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2357889999999999999999888764
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.0002 Score=57.43 Aligned_cols=109 Identities=8% Similarity=-0.109 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 047659 79 MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLV 158 (619)
Q Consensus 79 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (619)
++++|...|+++.+.+.. . +. |...|...+.+++|.+.|++..+.+ ++.++..+...|.
T Consensus 10 d~~~A~~~~~~aa~~g~~--~--------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM--F--------------GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT--T--------------HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH--h--------------hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 566777777777664321 1 33 6666666667777777777777653 5667777777776
Q ss_pred h----cCChhHHHHHHHHHhhCCc-cchHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047659 159 D----SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLR----KGVIENAFHMHRQVIQRG 208 (619)
Q Consensus 159 ~----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 208 (619)
. .+++++|+++|++..+.+. +.+..+...|.. .+++++|.++++...+.|
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6 6677777777777666654 346666666666 666777777777666665
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00017 Score=52.87 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCCCccHHHHHHHHHccCC---hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSDM---RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAY 137 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 137 (619)
|.++..+..++.++...++ .++|...+++++..+|++.. +...++..+.+.|++++|+..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r--------------A~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA--------------ALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5667777788887765544 68888888888888888777 677888888888888888888888
Q ss_pred HHhCCCC
Q 047659 138 MSDMGIY 144 (619)
Q Consensus 138 ~~~~~~~ 144 (619)
+++..+.
T Consensus 69 ~l~~~p~ 75 (93)
T 3bee_A 69 LLDSNDP 75 (93)
T ss_dssp HHTCCCT
T ss_pred HHhhCCC
Confidence 8876544
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00013 Score=54.68 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCC
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHN--CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGK 96 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 96 (619)
++.....+...+.+.|++++|+..|+.+.. |.++.+|..++.++...|++++|...|++++...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 566777888889999999999999999988 888999999999999999999999999999986543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0016 Score=60.49 Aligned_cols=133 Identities=9% Similarity=-0.070 Sum_probs=72.3
Q ss_pred CCCCccHHHHH--HHHHccC---ChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHH---cC-Ch---
Q 047659 61 CVSSPNIAQLI--HVLLQSD---MRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVR---IG-KI--- 128 (619)
Q Consensus 61 ~~~~~~~~~l~--~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~--- 128 (619)
|.++.+|.... ..+...+ ...+|+.+|+++++.+|+... +|..+..+|.- .+ ..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~--------------A~A~la~a~~~~~~~~~~~~~~ 256 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY--------------ARAEKALVDIVRHSQHPLDEKQ 256 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH--------------HHHHHHHHHHHHHHHSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHhccCCCchhh
Confidence 56777776544 4444443 458999999999999998766 33433333331 11 10
Q ss_pred -hhHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 129 -DESVEIFAYMSDM-GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 129 -~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
......++..... ..+.++.++..+...+...|++++|+..+++++..+++. |..+...+.-.|++++|.+.++++
T Consensus 257 ~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0111111111111 112255555555555555566666666666666665533 445555555666666666666666
Q ss_pred HHC
Q 047659 205 IQR 207 (619)
Q Consensus 205 ~~~ 207 (619)
...
T Consensus 337 lrL 339 (372)
T 3ly7_A 337 FNL 339 (372)
T ss_dssp HHH
T ss_pred Hhc
Confidence 655
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.48 E-value=5.9e-05 Score=56.50 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=43.6
Q ss_pred HHHHHHccCCchhHHHHHHHhhc--CCCCc-cHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 38 ILANLIKTNNPTPAIQFFKWTHN--CVSSP-NIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 38 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
....+.+.|++++|+..|+.+.. |.+.. .+..++.++...|++++|...|++++..+|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 34445667777777777777766 55666 7777777777777777777777777777766554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00016 Score=54.08 Aligned_cols=63 Identities=10% Similarity=0.160 Sum_probs=36.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+..+.+.|++++|...|++++..+|.+... ++..++.+|...|++++|+..|+++++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDE-------------AYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHH-------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655544321 3455666666666666666666666655443
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.30 E-value=0.0057 Score=54.43 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc-----CCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 047659 194 IENAFHMHRQVIQRGFVPN---IVTCNKILKRLCIN-----GQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKE-AKL 264 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 264 (619)
...|...++++++.. |+ ...|..+...|... |+.++|.+.|++.++.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 455666666666653 33 44666777777663 77777777777777654433456666666666663 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 047659 265 EKAFQLYNLMMEMDLV 280 (619)
Q Consensus 265 ~~a~~~~~~m~~~~~~ 280 (619)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777766544
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.26 E-value=0.0023 Score=46.69 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHcCC---hhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 114 DYSFLIENYVRIGK---IDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 114 ~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
.+..++.++...++ .++|..++++.++.+|. ++.++..+...+.+.|++++|+..|+++.+.+|
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66777777765554 68888888888887665 788888888888888888888888888888777
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.15 E-value=0.0012 Score=64.24 Aligned_cols=96 Identities=6% Similarity=-0.007 Sum_probs=75.8
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc-------CCC---CccHHHHHHHHHccCChhHHHHHHHHHHHhc-----CCch
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN-------CVS---SPNIAQLIHVLLQSDMRDVASHVFDKMVIQF-----GKTY 98 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 98 (619)
.+...+..+.++|++++|+++++.+.. +.+ ..++..++.+|..+|++++|+.++++++... +..+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 444556777889999999999998875 333 3455778899999999999999999998752 2222
Q ss_pred hHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 99 NFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
+ ....++.|+..|..+|++++|+.+++++++
T Consensus 369 ~-----------~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 V-----------RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp H-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 222789999999999999999999998864
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.0013 Score=63.99 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=69.1
Q ss_pred ccCCchhHHHHHHHhhc-------CCCC---ccHHHHHHHHHccCChhHHHHHHHHHHHh-----cCCchhHHHHHHhhc
Q 047659 44 KTNNPTPAIQFFKWTHN-------CVSS---PNIAQLIHVLLQSDMRDVASHVFDKMVIQ-----FGKTYNFFRLFRDSL 108 (619)
Q Consensus 44 ~~~~~~~A~~~~~~~~~-------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~ 108 (619)
..|++++|+.+++.+.. +.++ .++..++.+|..+|++++|+.++++++.. +++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~--------- 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN--------- 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH---------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH---------
Confidence 46789999999998776 3333 55678999999999999999999999874 222222
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
....++.|+..|..+|++++|+.+++++++
T Consensus 381 --~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 381 --VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 122799999999999999999999999864
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.016 Score=54.02 Aligned_cols=74 Identities=7% Similarity=0.012 Sum_probs=47.2
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047659 210 VPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS 287 (619)
Q Consensus 210 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 287 (619)
+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4555566666555556677777777777777653 55556666666667777777777777766664 45555543
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.026 Score=50.21 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhhCCcc-----chHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCcchH
Q 047659 164 GQYYKLCRAMRGKGFC-----VYEFLMNGLLRK-----GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCIN-GQIGNA 232 (619)
Q Consensus 164 ~~A~~~~~~~~~~~~~-----~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A 232 (619)
..|...++++++.+|+ .|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 5788889999999884 388899999884 99999999999999986323477888888888884 999999
Q ss_pred HHHHHHHHhCCCC--CChhhHHH
Q 047659 233 SSLFDVLLLVGPK--PNVVTFST 253 (619)
Q Consensus 233 ~~~~~~~~~~~~~--~~~~~~~~ 253 (619)
.+.+++.+...+. |+....+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 260 DEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999987665 55443333
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0072 Score=58.72 Aligned_cols=89 Identities=4% Similarity=-0.067 Sum_probs=69.1
Q ss_pred ccCChhHHHHHHHHHHHhcC-----CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC-----CCC-
Q 047659 76 QSDMRDVASHVFDKMVIQFG-----KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM-----GIY- 144 (619)
Q Consensus 76 ~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~- 144 (619)
..|++++|..++++++.... .+++. ..+++.|+.+|..+|++++|+.+++++++. |+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-----------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYM-----------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHH-----------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 56899999999999988532 22221 127899999999999999999999998642 332
Q ss_pred CCH-HhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 047659 145 LSP-DLVQRLMSCLVDSNSVGQYYKLCRAMRG 175 (619)
Q Consensus 145 ~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 175 (619)
|+. .+++.++.+|..+|++++|..+++++.+
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222 3578899999999999999999888653
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.73 E-value=0.0082 Score=44.99 Aligned_cols=82 Identities=10% Similarity=0.001 Sum_probs=58.1
Q ss_pred CCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCC
Q 047659 63 SSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMG 142 (619)
Q Consensus 63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 142 (619)
++.....++..+.+.|+++.|...|+.++...+.... .-.....++..|+.+|.+.|+++.|+..++++++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3455677888888999999999999998876321100 000111278899999999999999999999999865
Q ss_pred CCCCHHhHHH
Q 047659 143 IYLSPDLVQR 152 (619)
Q Consensus 143 ~~~~~~~~~~ 152 (619)
|. ++.+...
T Consensus 77 P~-~~~~~~n 85 (104)
T 2v5f_A 77 PE-HQRANGN 85 (104)
T ss_dssp TT-CHHHHHH
T ss_pred CC-CHHHHhh
Confidence 55 4544333
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.0038 Score=49.68 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHhhCC-c----cchHHHHHHHHhcCCHHHHHHHH
Q 047659 130 ESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSN---SVGQYYKLCRAMRGKG-F----CVYEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 130 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~A~~~~ 201 (619)
.+.+-|++..+.++ ++..+...+..++++.+ +.++++.+++.+.+.+ | |.+..+..++.+.|++++|++.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444444433 35555555555555554 3335555555555444 3 12444445555555555555555
Q ss_pred HHHHHC
Q 047659 202 RQVIQR 207 (619)
Q Consensus 202 ~~~~~~ 207 (619)
+.+++.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.72 E-value=0.039 Score=59.29 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHHccCCchhHHH-HHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHH
Q 047659 41 NLIKTNNPTPAIQ-FFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLI 119 (619)
Q Consensus 41 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 119 (619)
.....+++++|.+ ++..+. +......++..+...|.+++|.+..+.... -.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~---~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------------------~f 659 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE---GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------------------KF 659 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC---CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------------------HH
T ss_pred HHHHhCCHHHHHHHHHhcCC---chHHHHHHHHHHHhCCChHHheecCCCcch-------------------------he
Confidence 3455888888877 653322 022236666777788888888766532211 12
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (619)
......|++++|.++.+.+ .++..|..++..+.+.++++.|.+.|.++.. +..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHH
Confidence 3456789999998876433 2678899999999999999999888887643 4444455555555555444
Q ss_pred HHHHHHHC
Q 047659 200 MHRQVIQR 207 (619)
Q Consensus 200 ~~~~~~~~ 207 (619)
+.+.....
T Consensus 729 ~~~~a~~~ 736 (814)
T 3mkq_A 729 LAKDAETT 736 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44444433
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.71 E-value=0.0064 Score=48.38 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=52.6
Q ss_pred CCCCccHHHHHHHHHccC---ChhHHHHHHHHHHHhc-C-CchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHH
Q 047659 61 CVSSPNIAQLIHVLLQSD---MRDVASHVFDKMVIQF-G-KTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIF 135 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 135 (619)
+.+..+...++..+.+.+ +.++++.+|+..++.+ | .+.+ .+..|+-+|.+.|++++|++.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd--------------~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD--------------YVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH--------------HHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH--------------HHHHHHHHHHHccCHHHHHHHH
Confidence 567777788888888877 5568888888888876 4 2333 5567777778888888888888
Q ss_pred HHHHhCCCC
Q 047659 136 AYMSDMGIY 144 (619)
Q Consensus 136 ~~~~~~~~~ 144 (619)
+.+++..|.
T Consensus 95 ~~lL~ieP~ 103 (152)
T 1pc2_A 95 RGLLQTEPQ 103 (152)
T ss_dssp HHHHHHCTT
T ss_pred HHHHhcCCC
Confidence 888886543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.62 E-value=0.037 Score=43.29 Aligned_cols=110 Identities=8% Similarity=0.003 Sum_probs=75.2
Q ss_pred cCCCCccHHHHHHHHHccCCh------hHHHHHHHHHHHhcCCchhH-HHHHHhhcCCCcccHHHHHHHHHHcCChhhHH
Q 047659 60 NCVSSPNIAQLIHVLLQSDMR------DVASHVFDKMVIQFGKTYNF-FRLFRDSLGDFGCDYSFLIENYVRIGKIDESV 132 (619)
Q Consensus 60 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 132 (619)
.|.++++|-..+..+-+.|++ ++-+..|++++..-|..... .+.+.. .|...+ .+...+++++|.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~-------LWIrYA-~~~ei~D~d~aR 80 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFAR-------IQVRFA-ELKAIQEPDDAR 80 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHH-------HHHHHH-HHHHHHCGGGCH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHH-------HHHHHH-HHHHhcCHHHHH
Confidence 378889999999999888999 88889999999876643110 001110 111112 123448999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 133 EIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
++|+.+++.+-.- ...|...+..-.++|+...|.+++.+.+..+|
T Consensus 81 ~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 81 DYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 9999997653333 66777777777788888888887777776665
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.40 E-value=0.013 Score=43.96 Aligned_cols=71 Identities=8% Similarity=-0.113 Sum_probs=62.0
Q ss_pred cCChhhHHHHHHHHHccCCchhHHHHHHHhhc---C------CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchh
Q 047659 29 DLQFNQANAILANLIKTNNPTPAIQFFKWTHN---C------VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYN 99 (619)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 99 (619)
.+++++...+...+.+.|++..|..-|+.+.. + .....+..++.++.+.|+++.|...+++++...|.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 47889999999999999999999999999887 1 12345678999999999999999999999999888765
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.23 Score=40.63 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=75.3
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHH
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (619)
......|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999988776 2678899999999999999999998888654 5566667777777777776
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHH
Q 047659 200 MHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVL 239 (619)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 239 (619)
+-+.....| -++.....+...|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666665554 2344445555677777777777554
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.11 E-value=0.031 Score=54.34 Aligned_cols=92 Identities=8% Similarity=-0.006 Sum_probs=71.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHH-----CC-CCcCH-HH
Q 047659 495 IRGIASQGSLSSAILLFFQMLKRG---LTPD----VITYSAIIHGLFKGKNISVGLHMFKLMER-----NG-VAPDI-AI 560 (619)
Q Consensus 495 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~-~~ 560 (619)
+..+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|..+++++.. .| -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999999988631 2222 35788899999999999999999988764 22 23333 37
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 561 YNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999988764
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.81 E-value=4.9e-06 Score=78.45 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=97.0
Q ss_pred CCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 62 VSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
+.+.+|..++.+.+..|+..+|+..|-++ .+|. .|..++.+..+.|.+++-+..++-..+.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps-----------------~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS-----------------SYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC-----------------SSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35555555666665555555555444332 1111 3445555555555555555555444432
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhH----------------------------HHHHHHHHhhCCccchHHHHHHHHhcCC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVGQ----------------------------YYKLCRAMRGKGFCVYEFLMNGLLRKGV 193 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~----------------------------A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (619)
. .++..=+.++-+|++.++..+ |.-+|..+ +-|..+..++.+.|+
T Consensus 113 ~--ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i-----sN~akLAstLV~L~~ 185 (624)
T 3lvg_A 113 A--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE 185 (624)
T ss_dssp C--CSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-----CCCTTTSSSSSSCSG
T ss_pred h--cccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC-----ccHHHHHHHHHHHHH
Confidence 1 123333445555555555433 33222221 114444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047659 194 IENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNL 273 (619)
Q Consensus 194 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 273 (619)
+..|.+..++ ..++.+|..+-.+|...+.+..|.-.--.++- .++ ....++..|-..|.+++-+.+++.
T Consensus 186 yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5554432211 23566677777777777766666554444431 222 123445556666777776666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc
Q 047659 274 MMEMDLVPDLIIYSILIDGLFKA 296 (619)
Q Consensus 274 m~~~~~~~~~~~~~~ll~~~~~~ 296 (619)
-... -.....+|+-|.-.|++-
T Consensus 255 glgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 255 ALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HhCC-CchhHHHHHHHHHHHHhc
Confidence 5532 122445566665555554
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.45 Score=38.89 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred HHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHH
Q 047659 42 LIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKM 90 (619)
Q Consensus 42 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 90 (619)
.++.|+++.|.++.+.+ .+...|..++...+..|+++-|+..|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34445555555544433 23444455555555555555444444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.76 E-value=0.17 Score=39.72 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=83.2
Q ss_pred ccCChhhHHHHHHHHHccCCc------hhHHHHHHHhhc--CCC-CccHHHHHHHH------HccCChhHHHHHHHHHHH
Q 047659 28 SDLQFNQANAILANLIKTNNP------TPAIQFFKWTHN--CVS-SPNIAQLIHVL------LQSDMRDVASHVFDKMVI 92 (619)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~--~~~-~~~~~~l~~~~------~~~g~~~~A~~~~~~~~~ 92 (619)
.+.+|+.-..-+..+-+.|++ +..+++|+.+.. |+. ...|...+.++ ...++.++|++.|+.+++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455777777777777778999 888899998877 333 23333333222 345899999999999988
Q ss_pred hcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 93 QFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
. .+.. ..+|...++.=.++|++..|.+++.+.+..++.| ...+...++-+
T Consensus 89 ~-hKkF-------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 89 N-CKKF-------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp H-CTTB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred H-hHHH-------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 6 4443 2388888899999999999999999999988774 44444444433
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.67 E-value=0.096 Score=56.24 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=71.7
Q ss_pred CC-hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 30 LQ-FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 30 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
+. +..+..++..+.+.|.++.|+++.+.. ..-+......|++++|.++.+.+ ++..
T Consensus 626 i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~-----~~~~--------- 682 (814)
T 3mkq_A 626 VEGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDE-----SAEM--------- 682 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTC-----CCHH---------
T ss_pred CCchHHHHHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhh-----CcHh---------
Confidence 35 667778888888889999988776422 23356678899999999885443 1122
Q ss_pred CCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 047659 109 GDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKL 169 (619)
Q Consensus 109 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 169 (619)
.|..++..+.+.|+++.|.++|.++.. +..+...+...|+.+...++
T Consensus 683 -----~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 683 -----KWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 889999999999999999999998732 22344444445555544433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.58 E-value=0.092 Score=40.09 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=67.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISV---GLHMFKLMERNGVAP--DIAIYNVLLNMLIK 570 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 570 (619)
........+..+.+-|......|. |+..+--.+.+++++..+... ++.+++...+.+ .| .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333344455667777777666553 677777778888888887666 888888887753 23 34455667778999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH
Q 047659 571 ECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 571 ~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
.|++++|.+.++.+++ +.|+.
T Consensus 87 lg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTC
T ss_pred hhhHHHHHHHHHHHHH--hCCCC
Confidence 9999999999999998 57753
No 233
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.56 E-value=0.21 Score=55.54 Aligned_cols=161 Identities=11% Similarity=0.138 Sum_probs=111.0
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhHHHHHH---hh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNFFRLFR---DS 107 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~---~~ 107 (619)
....++..+...+.++.|.++..++. .++.....++++++..|++++|...|+++....... ......+. ..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLN--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhcc--CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 45567777888999999999888876 455566889999999999999999999874322111 11111111 11
Q ss_pred cC---CCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--
Q 047659 108 LG---DFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSP----DLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-- 178 (619)
Q Consensus 108 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 178 (619)
.+ .....|..++..+-+.|.++.++++-..+++.....+. ..|..+.+.+...|++++|...+..+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 11 11125788888999999999999988888765333232 2578888999999999999888877765444
Q ss_pred cchHHHHHHHHhcCCHHH
Q 047659 179 CVYEFLMNGLLRKGVIEN 196 (619)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~ 196 (619)
+....++..++..|..+.
T Consensus 972 ~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCChhh
Confidence 346666666666665443
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.56 E-value=0.57 Score=35.87 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=57.8
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047659 522 DVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLE 590 (619)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 590 (619)
+...++..++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455677888889999999999999887553 5788999999999999999999999999999999874
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.51 E-value=3.1e-05 Score=73.16 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=137.8
Q ss_pred CcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc--hHHHHHHH
Q 047659 111 FGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV--YEFLMNGL 188 (619)
Q Consensus 111 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~ 188 (619)
.+.+|..|+.+.++.|++.+|++.|=+. .|+..|..++.+..+.|.+++-+..+.-+.+..-++ =+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3348899999999999999988877322 256677888888888899988888887766554433 67788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047659 189 LRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAF 268 (619)
Q Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 268 (619)
++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 88888765444331 46666667778888888888888777665421 223333444555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047659 269 QLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGG 348 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 348 (619)
+.-++. -+..||..+-.+|...+.+..|.-.--.+.-.. .-...++..|-..|-+++.+.+++.-...
T Consensus 191 daArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl- 258 (624)
T 3lvg_A 191 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL- 258 (624)
T ss_dssp TTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-
T ss_pred HHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-
Confidence 332211 245566666667777666665544433333211 11223455566667777666666665532
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 047659 349 FLPNVISYSILIKGLCQQ 366 (619)
Q Consensus 349 ~~~~~~~~~~ll~~~~~~ 366 (619)
-......|+.|.-.|++-
T Consensus 259 ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 134566666666666553
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.37 E-value=0.089 Score=42.19 Aligned_cols=60 Identities=5% Similarity=-0.060 Sum_probs=50.5
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhc--CCCCc---------cHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHN--CVSSP---------NIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.+...+..+...|.++.|+-+.+.+.. ..++. +...++.++...|++..|...|++++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 678888899999999999999998776 22333 5578889999999999999999998764
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.35 E-value=0.19 Score=38.41 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhH---HHHHHHHHhhCC-c----cchHHHHHHHHhcCCH
Q 047659 123 VRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQ---YYKLCRAMRGKG-F----CVYEFLMNGLLRKGVI 194 (619)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~ 194 (619)
........+.+-|++....+. ++..+...++.+++++++... ++.+++.+.+.+ | +....+.-++.+.|++
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334456667777777766554 688888899999999887766 888999988877 5 2377788888899999
Q ss_pred HHHHHHHHHHHHCC
Q 047659 195 ENAFHMHRQVIQRG 208 (619)
Q Consensus 195 ~~A~~~~~~~~~~~ 208 (619)
+.|++.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.09 E-value=0.83 Score=35.00 Aligned_cols=137 Identities=11% Similarity=0.118 Sum_probs=73.4
Q ss_pred cCChhHHHHHHHHHhhCCc-cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHH
Q 047659 160 SNSVGQYYKLCRAMRGKGF-CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDV 238 (619)
Q Consensus 160 ~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 238 (619)
.|..++..++..+..+..+ +.++..+--....-+-+-..++++.+-+. -|.. .+|++......+-.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 4555555555555555444 33555554444444444444444444322 1211 23444444444433
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047659 239 LLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDRGLK 315 (619)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 315 (619)
+ ..+.......+..+...|.-++-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+..+.|++
T Consensus 87 ~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 87 N-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp T-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred h-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3 12344455556666667777777777766433 23556666667777777777777777777777766653
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.65 E-value=0.46 Score=45.44 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047659 116 SFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 173 (619)
..++..+...|++++|+..++.+....|- +...+..++.+|.+.|+..+|++.|+++
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555433 5555555555555555555555555554
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.19 E-value=1.2 Score=31.97 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047659 538 NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICG 602 (619)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 602 (619)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++..+.+ ..+...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34456666666666777788888888888888888888888888877743 22334556666654
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.91 E-value=1 Score=36.09 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=72.8
Q ss_pred CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHh
Q 047659 61 CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSD 140 (619)
Q Consensus 61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 140 (619)
..+.+++..-+..+...|.++.|+.+...++.....+++.+..-. --.+...++.++...|++..|...|+.+++
T Consensus 17 ~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~-----~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 17 RGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQ-----KYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455677778888899999999999999887765332222100000 001677889999999999999999999754
Q ss_pred CC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc--cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 141 MG--IYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF--CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 141 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
.. ...++.+...+. . ....... ..... ++-..+..|+.+.+++++|+.+++.+...
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~s-------~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQS-------QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC-------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCcccccc-c---cCCCccc-------ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 21 111111111110 0 0000000 00111 22445777888888888888887776544
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.30 E-value=2.9 Score=43.42 Aligned_cols=139 Identities=8% Similarity=0.011 Sum_probs=78.7
Q ss_pred ChhhHHHHHHHHHccCC-chhHHHHHHHhhc-CCCCccHHHHH--HHHHccC-ChhHHHHHHHHHHHhcC--------Cc
Q 047659 31 QFNQANAILANLIKTNN-PTPAIQFFKWTHN-CVSSPNIAQLI--HVLLQSD-MRDVASHVFDKMVIQFG--------KT 97 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~-~~~~~~~~~l~--~~~~~~g-~~~~A~~~~~~~~~~~~--------~~ 97 (619)
+......++..+...+. .+.|+.+|+.+.. .+....+...+ .++.+.+ +=-+|..++.+.++... ..
T Consensus 247 ~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 247 NNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp SSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 34445555555555666 4789999998886 33333333222 2222232 22345666666554210 00
Q ss_pred hhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 98 YNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
.+.... .+........=+..+...|+++-|+.+-++.....|. +..+|..|+.+|...|+++.|+-.+..+.
T Consensus 327 ~~~~~~----~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARL----MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccc----cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000000 0000002222244566788888888888888876444 67888888888888888888888777764
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.19 E-value=2.4 Score=32.39 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047659 539 ISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTIICGY 603 (619)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 603 (619)
.-+..+-++.+...++.|++.+..+.+++|.+.+|+..|.++++-.+.+ ..+...+|..++...
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3345566666666777888888888888888888888888888888753 334455666666543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.14 E-value=14 Score=37.44 Aligned_cols=116 Identities=13% Similarity=-0.019 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047659 192 GVIENAFHMHRQVIQRGFVPNIVTCNKILKRLC----INGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKA 267 (619)
Q Consensus 192 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 267 (619)
.+.+.|...+....+.. ..+......+-...+ ..+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36777877777776543 233333332222222 2333556666666654432 2222233333344567888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 268 FQLYNLMMEMDLVPDLIIYSILIDGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.+.|+.|...... .....-=+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888877653211 233333345566777888888888887764
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.97 Score=46.83 Aligned_cols=86 Identities=7% Similarity=-0.067 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccC---------ChHHHHHHHHHHHHC---
Q 047659 485 KPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGK---------NISVGLHMFKLMERN--- 552 (619)
Q Consensus 485 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~~~~--- 552 (619)
+-+..-|..|.....+.+++++|.+.|+..+.. +-+...+..|++.|.+.+ +.+..+...=++...
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 445666888888888888888888888888865 567788888888888766 555555544444321
Q ss_pred -CCCcCHHHHHHHHHHHHHcC
Q 047659 553 -GVAPDIAIYNVLLNMLIKEC 572 (619)
Q Consensus 553 -~~~~~~~~~~~l~~~~~~~g 572 (619)
-...+......+.+.+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11234555566666666655
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.10 E-value=2.8 Score=32.18 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047659 520 TPDVITYSAIIHGLFKGKNI---SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
.|+..+--.+.+++++..+. ..++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 45666655666677766643 46777777777654222355666777788888888888888888887 56763
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.07 E-value=5.3 Score=44.41 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV----VTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILI 290 (619)
Q Consensus 215 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 290 (619)
-|..++..+-+.+.++.+.+.-....+.....+. ..|..+..++...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3566666777777777777666655543221111 2466677777777777777777776665432 345566666
Q ss_pred HHHHhcCCHHH
Q 047659 291 DGLFKAGRLKE 301 (619)
Q Consensus 291 ~~~~~~~~~~~ 301 (619)
...+..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666555443
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.98 E-value=1.7 Score=41.44 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCc-c--chHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhhHHHH
Q 047659 149 LVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-C--VYEFLMNGLLRKGVIENAFHMHRQVIQR-----GFVPNIVTCNKI 219 (619)
Q Consensus 149 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 219 (619)
+...++..+...|++.+|+..+..+....| + .+..++.++.+.|+..+|++.|+...+. |+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 456678888999999999999999999998 3 3999999999999999999999987653 888887765433
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.28 E-value=3.8 Score=31.40 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 142 GIYLSPDLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
+..|++.+....+.+++++.+.+ +++.+++.+.+.++ +.+..+..++.+.|+++.|++..+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46678888888888888877653 67888888877776 22777778888888888888888888876
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.36 E-value=16 Score=35.35 Aligned_cols=151 Identities=9% Similarity=0.069 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 047659 456 FNTLMDGCCRLKRATDTVKLFMLMGM--YNIKPD---VITHTVLIRGIASQGSLSSAILLFFQMLK----RGLTPD--VI 524 (619)
Q Consensus 456 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~ 524 (619)
...|...+...|++.+|..++..+.. .+.... ...+...++.|...+++.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35677888889999999999988753 221111 23566677888889999999988888643 222222 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHC-CCCcCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047659 525 TYSAIIHGLFKGKNISVGLHMFKLMERN-GVAPDIAIY----NVLLNMLIKECNLDAALKLFGQLTDRGLEPDIITYNTI 599 (619)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 599 (619)
.+...+..+...+++.+|.+.|.++... ....|...+ ..++.+..-.+....-..++........-++.+.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 5567777778888888888887776542 111233322 23333334445555555555555554444567778888
Q ss_pred HHHHhhc
Q 047659 600 ICGYCSL 606 (619)
Q Consensus 600 l~~~~~~ 606 (619)
+.+|...
T Consensus 300 ~k~f~~~ 306 (445)
T 4b4t_P 300 VKLFTTN 306 (445)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8888654
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.04 E-value=1.4 Score=38.69 Aligned_cols=59 Identities=14% Similarity=-0.044 Sum_probs=44.3
Q ss_pred HHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCC
Q 047659 72 HVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIY 144 (619)
Q Consensus 72 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 144 (619)
..+.+.|.+++|+......++..|.+.+ ....+.+.++-.|+++.|.+-++...+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~--------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDAS--------------LRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHH--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888888888888888777766 6777788888888888888888777765443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.67 E-value=2 Score=37.74 Aligned_cols=58 Identities=9% Similarity=0.003 Sum_probs=47.0
Q ss_pred HHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc
Q 047659 120 ENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF 178 (619)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 178 (619)
....+.|++++|++....-++..|. |......++..+|-.|++++|..-++.+.+.+|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3456778888888888888887665 888888888888888888888888888887777
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.52 E-value=33 Score=36.59 Aligned_cols=525 Identities=12% Similarity=0.031 Sum_probs=234.6
Q ss_pred hHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHc---cCChhHHHHHHHHHHHhcCCchh----HHHHHHh
Q 047659 34 QANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQ---SDMRDVASHVFDKMVIQFGKTYN----FFRLFRD 106 (619)
Q Consensus 34 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~ 106 (619)
.+..++...++.|...+|..+.-.+.. .+.....+.-... .+++.+...+.-.+....+.+.+ .++.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~er---LD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~ 223 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYR---LDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFD 223 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh---HHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Confidence 456666666788888888887766653 1111111110000 12333333333333333333322 2222222
Q ss_pred hcCCC-cccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-------
Q 047659 107 SLGDF-GCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF------- 178 (619)
Q Consensus 107 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------- 178 (619)
.+... ..-|..+++++.+.++.+.+.++|+.+.+ ..+...-..+.-.+.+.++..--.++.+.+.....
T Consensus 224 Iy~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~---~~d~l~ayQiAFdL~~~~~Q~fL~~v~~~l~~~e~~~kL~~I 300 (963)
T 4ady_A 224 FLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKE---ENDEGLSAQIAFDLVSSASQQLLEILVTELTAQGYDPALLNI 300 (963)
T ss_dssp HHHHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHh---cccHHHHHHHHHHHhcccchHHHHHHHHhccccchhHHHHHH
Confidence 22111 11577788888899999999999999874 22555555555555554432221222222211100
Q ss_pred --c-chHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCC-Ch--hhHHHHHHHHHhcCCcchH-HHHH-HHHHhCCCCCChh
Q 047659 179 --C-VYEFLMNGLL-RKGVIENAFHMHRQVIQRGFVP-NI--VTCNKILKRLCINGQIGNA-SSLF-DVLLLVGPKPNVV 249 (619)
Q Consensus 179 --~-~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~-~~--~~~~~ll~~~~~~~~~~~A-~~~~-~~~~~~~~~~~~~ 249 (619)
. ....+-..+. +.+..+ ..+.+.+... +.. +. .+-..+.+++...|--.+. .... +.+-+. .+...
T Consensus 301 Lsg~~~~~Lyl~FL~~~n~~d--~~~l~~~K~~-ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k 375 (963)
T 4ady_A 301 LSGLPTCDYYNTFLLNNKNID--IGLLNKSKSS-LDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAK 375 (963)
T ss_dssp TTSHHHHHHHHHHHHHHCCCC--HHHHHHHHHH-SCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHH
T ss_pred hCCCChHHHHHHHHHhccccc--hhhHHHHHhh-hcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHH
Confidence 0 0111111111 111111 1112222111 111 11 1222445556666644332 2211 122111 11111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS--ILIDGLFKAGRLKEGNELLLTALDRGL-------KLDVVV 320 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~ 320 (619)
.-.+..-+....|+.++++.+++.....+-..+..+-. .+.-+....|..+++..++.......- .+....
T Consensus 376 ~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 376 FTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 11112234456677777777766554321112322222 223334455555566666666554321 011111
Q ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047659 321 FSSVMDA--YVGIGDVGRAVQTYDRMLNGGFLPNVIS--YS--ILIKGLCQQGRLVEACGLFGQVLIRRLEPSLLTYSSL 394 (619)
Q Consensus 321 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 394 (619)
-..+.-+ |...++ +++.+.+..+.... +... .. .+...+.-.|+.+....++..+.+. . +..+...+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~a 528 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--Q-HGNITRGL 528 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--S-CHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--C-cHHHHHHH
Confidence 2222223 333343 34455555544421 2211 11 2222334556666666666666543 1 22333333
Q ss_pred HH--HHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047659 395 ID--GFCKSGKLRDGFSLYDNMIKRGLKPDAVVCSLLINGLMGDALRFFFQSVRMTLIPNLFIFNTLMDGCCRLKRATDT 472 (619)
Q Consensus 395 l~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 472 (619)
.- ++...|+.+.+..+.+.+... .+... ....-.++.-+|+..|+....
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~---~dp~v--------------------------Rygaa~alglAyaGTGn~~aI 579 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLAS---DESLL--------------------------RYGGAFTIALAYAGTGNNSAV 579 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHC---SCHHH--------------------------HHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhC---CCHHH--------------------------HHHHHHHHHHHhcCCCCHHHH
Confidence 33 334567777777777766653 11110 001112344566777887777
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 047659 473 VKLFMLMGMYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI-SVGLHMFKLMER 551 (619)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 551 (619)
.++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++..+..
T Consensus 580 q~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 580 KRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77887776531 1222222223333444566666667766665543 45554444444444445543 567778888765
Q ss_pred CCCCcCHHHHHHHHHHHHHc--C-------CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCccc
Q 047659 552 NGVAPDIAIYNVLLNMLIKE--C-------NLDAALKLFGQLTD-RGLEPDIITYNTIICGYCSLNSCL 610 (619)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~--g-------~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~~~~~~~~~ 610 (619)
. +|..+-..-+.++..- | ++...++.+..... +.-.|+...-..+..|....|...
T Consensus 658 D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 658 D---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp C---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred C---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 3 3444443333344332 2 33444444333332 223445666666666666666543
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.51 E-value=8.6 Score=29.91 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 520 TPDVITYSAIIHGLFKGKNI---SVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 520 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
.|+..+--.+.+++++..+. .+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 45665555566666666543 45667777766643222344555666677788888888888888877 5665
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.43 E-value=4.5 Score=29.11 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047659 504 LSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLL 565 (619)
Q Consensus 504 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 565 (619)
.=+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-.+.. ..+...+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3345555566666667777777777777777777777777777766653 122233455544
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.34 E-value=22 Score=34.43 Aligned_cols=189 Identities=12% Similarity=0.039 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 78 DMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 78 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
|++++|.+.+-.+.+......+ .+....+...++..|...|+++...+.+..+.+.... -......+++.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d--------~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASD--------LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCS--------TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccc--------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 5666777666555443211111 1111225667888888899998888877766654322 222233333322
Q ss_pred ----HhcCChhHH--HHHHHHHhhC--C-c--cc-----hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhH
Q 047659 158 ----VDSNSVGQY--YKLCRAMRGK--G-F--CV-----YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPN-----IVTC 216 (619)
Q Consensus 158 ----~~~~~~~~A--~~~~~~~~~~--~-~--~~-----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~ 216 (619)
......+.. ..+.+..... + . ++ ...+...+...|++.+|..++..+...-...+ ...+
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222322211 1111111110 1 0 11 24566677777777777777777654311111 2344
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 217 NKILKRLCINGQIGNASSLFDVLLL----VGPKPN--VVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 217 ~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...++.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555666667777777766666531 111222 2234445555566666666666655554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.82 E-value=11 Score=29.37 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=50.8
Q ss_pred CCCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047659 143 IYLSPDLVQRLMSCLVDSNSVG---QYYKLCRAMRGKGF----CVYEFLMNGLLRKGVIENAFHMHRQVIQR 207 (619)
Q Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 207 (619)
..|++.+....+.+++++.+.. +++.+++.+.+.++ +....+..++.+.|+++.|++..+.+++.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3578888888888888877654 67778888877766 22777778888888888888888888887
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.85 E-value=49 Score=35.30 Aligned_cols=268 Identities=13% Similarity=0.065 Sum_probs=135.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 047659 326 DAYVGIGDVGRAVQTYDRMLNGGFLPNVI--SYSILIKGLCQQGRLVEACGLFGQVLIRRL-------EPSLLTYSSLID 396 (619)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~ 396 (619)
-+....|+.++++.++......+-..+.. .-..+.-+....|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556777777777777665421112322 223333445555655667776666554311 011111222222
Q ss_pred HHHhcCC-hHHHHHHHHHHHHcCCCCCHhh-HHHHH-----hc--cHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHh
Q 047659 397 GFCKSGK-LRDGFSLYDNMIKRGLKPDAVV-CSLLI-----NG--LMGDALRFFFQSVRMTLIPNLFIFN--TLMDGCCR 465 (619)
Q Consensus 397 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~-~~~ll-----~~--~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 465 (619)
+.+-.|. -+++...+..+....- .... ...+- -+ ..+....++..+.+.. +..... .+.-++..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 2222332 2344555555444211 1111 11111 11 3333344444444321 222333 33334447
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHH
Q 047659 466 LKRATDTVKLFMLMGMYNIKPDVITH--TVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGL 543 (619)
Q Consensus 466 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 543 (619)
.|+.+.+..+.+.+.... .|....- .++..+|+..|+......++..+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789999999988887531 2222222 234456778899888888999988742 233444444444555677777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 047659 544 HMFKLMERNGVAPDIAIYNVLLNMLIKECNL-DAALKLFGQLTDRGLEPDIITYNTIICGYC 604 (619)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~ 604 (619)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+-..-+-+++
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 8877666653 34444444444444555554 578888888874 345444433333433
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.13 E-value=9 Score=29.30 Aligned_cols=60 Identities=10% Similarity=0.216 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047659 506 SAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAIYNVLLN 566 (619)
Q Consensus 506 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 566 (619)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-.+.+ ..+...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45555666666677888888888888888888888888888877653 2333445665543
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.03 E-value=4.5 Score=39.54 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccH-------HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 32 FNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNI-------AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
...++.+++.|+..+.+++|..+.....-|...... .-++++...++++.+|.+.+..++..-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 347888999999999999999999988643322222 236788999999999999999998865543
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.73 E-value=9.1 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDM--GIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMR 174 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 174 (619)
+...++..|.+.|+++.|.+.|.++... +...-...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7788899999999999999999888753 233345677778888888888888888877764
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.24 E-value=43 Score=32.80 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC---CHH---hHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYL---SPD---LVQRLMSCLVDSNSVGQYYKLCRAMRGK 176 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 176 (619)
+++.+++.|...+.++.|..+..+..- |.. +.. -+..+++.+.-++++.+|.+.+..+.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 566667777777777777777766631 111 111 1123444455555555555555554443
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.93 E-value=9.4 Score=41.36 Aligned_cols=128 Identities=10% Similarity=0.154 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCc---hhH---HHHH
Q 047659 31 QFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKT---YNF---FRLF 104 (619)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~---~~~~ 104 (619)
.+.....++..+...|.++-|.++..|+.. ++..-..++++++..|++++|...|+++-...... ... ...+
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~~~--t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~l 886 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 886 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGCCS--SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHH
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhc
Confidence 344555678888889999999998888873 55556789999999999999999999886432211 000 0111
Q ss_pred HhhcCCCc---ccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhc
Q 047659 105 RDSLGDFG---CDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD----LVQRLMSCLVDS 160 (619)
Q Consensus 105 ~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 160 (619)
........ ..|..++..+-+.+-++.++++-+.+++.-...|+. .|..+.++.+..
T Consensus 887 l~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 887 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 11111111 156777777777777777777777777542222332 455555555443
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.00 E-value=25 Score=29.29 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 537 KNISVGLHMFKLMERNGVAP-DIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+....+..+|..|..+|+.- -...|......+...|++++|.++|+.-.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 33556666666666655432 334566666666666666666666666666555553
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.01 E-value=44 Score=31.56 Aligned_cols=164 Identities=10% Similarity=-0.029 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHccCCchhHHHHHHHhhc--CCCCc-----cHHHHHHHHHcc-CChhHHHHHHHHHHHhcC-CchhHHHH
Q 047659 33 NQANAILANLIKTNNPTPAIQFFKWTHN--CVSSP-----NIAQLIHVLLQS-DMRDVASHVFDKMVIQFG-KTYNFFRL 103 (619)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~-----~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~ 103 (619)
..+..+...+.+.|+.++..+++..... +.-+. ....++..+... |..+.-.++....++-.- ....++
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl-- 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL-- 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3567778888889999999998888775 22222 223444444432 333333333333332100 000000
Q ss_pred HHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC--CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-
Q 047659 104 FRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--GIYLS---PDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG- 177 (619)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 177 (619)
+.. +=..++..|...|++.+|..++.++.+. ..... .+.+..-++.|...+++.++...+.......
T Consensus 98 -r~~------l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 98 -RQS------LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp -HHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHH------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 000 1226788888888888888888877642 11111 2334445566667777777777666553221
Q ss_pred ---ccc------hHHHHHHHH-hcCCHHHHHHHHHHHH
Q 047659 178 ---FCV------YEFLMNGLL-RKGVIENAFHMHRQVI 205 (619)
Q Consensus 178 ---~~~------~~~l~~~~~-~~~~~~~A~~~~~~~~ 205 (619)
+++ ...-+..+. ..+++..|...|-+..
T Consensus 171 ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 171 AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 111 222233444 5666666666555443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.71 E-value=40 Score=30.88 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=63.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCChhhHHHHHHHHHhcCCc
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMH----RQVIQRGFVPNIVTCNKILKRLCINGQI 229 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 229 (619)
..-|.+++++++|++++-.- ...+.+.|+...|-++. +...+.++++|......++..+.....-
T Consensus 42 ~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 34467788888888876553 33556667666655544 4455567778887777777777655432
Q ss_pred chH-HHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047659 230 GNA-SSLFDVLL----LVG--PKPNVVTFSTLINAFCKEAKLEKAFQLY 271 (619)
Q Consensus 230 ~~A-~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 271 (619)
+-. .++.+.++ +.| ..-|+.....+...|.+.+++.+|..-|
T Consensus 111 ~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 111 EPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 211 12222222 222 3335556666677777777777777665
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.31 E-value=18 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047659 540 SVGLHMFKLMERNGVAP-DIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDII 594 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 594 (619)
+++..+|..|..+|+.- -...|......+...|++++|.++|+.-.+.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34788899998887654 45578888888889999999999999988887777543
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.26 E-value=20 Score=34.62 Aligned_cols=97 Identities=8% Similarity=-0.070 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH--HH
Q 047659 250 TFSTLINAFCKEAKLEKAFQLYNLMMEM--DLVPDLIIYSILIDGLFKAGRLKEGNELLLTALDR---GLKLDVVV--FS 322 (619)
Q Consensus 250 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 322 (619)
+...+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455666666666666666666666543 22222345555666666666666666666655432 11122111 01
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 047659 323 SVMDAYVGIGDVGRAVQTYDRMLN 346 (619)
Q Consensus 323 ~ll~~~~~~~~~~~a~~~~~~~~~ 346 (619)
.-...+...+++..|-..|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223355667766666655543
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.81 E-value=49 Score=29.98 Aligned_cols=109 Identities=7% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047659 153 LMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHM----HRQVIQRGFVPNIVTCNKILKRLCINGQ 228 (619)
Q Consensus 153 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 228 (619)
+..-|.+++++++|++++..- ...+.+.|+...|-++ .+...+.+.+++......++..+.....
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 344566778888888876553 3345666776665554 4445556778888877778777765432
Q ss_pred cc-hHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 229 IG-NASSLFDVLL----LVG--PKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 229 ~~-~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
.+ .=.++++.++ +.| ..-++.....+...|.+.|++.+|...|-
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 22 2223333333 222 22356667777788888888888777653
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.85 E-value=24 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047659 542 GLHMFKLMERNGVAPD-IAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 542 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
+..+|..|..+|+.-. ...|......+...|++++|.++|+.-.+.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5566666666655433 345666666666677777777777776666666643
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.64 E-value=28 Score=29.00 Aligned_cols=58 Identities=10% Similarity=-0.113 Sum_probs=45.8
Q ss_pred cCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCC
Q 047659 77 SDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLS 146 (619)
Q Consensus 77 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 146 (619)
.+...++..+|.-+..+.-+..-++ .|...+..+-..|++.+|.++|+..++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Al------------fYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSL------------FYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4556788899999888755443322 788889999999999999999999998877763
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.68 E-value=64 Score=29.52 Aligned_cols=123 Identities=13% Similarity=0.073 Sum_probs=68.7
Q ss_pred HHHHHccCCc---hhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 39 LANLIKTNNP---TPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 39 ~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
+......|++ =+|-+.++.+. .=+.+++++++|.+++..-..
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi~------------~Ry~~~k~y~eAidLL~~GA~----------------------- 63 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLVA------------ARYSKQGNWAAAVDILASVSQ----------------------- 63 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHhCCCCccccHHHHHHHHHH------------HHHHhhcCHHHHHHHHHHHHH-----------------------
Confidence 3444668888 77877777655 456778888888887655543
Q ss_pred HHHHHHHHHcCChhhHHHHH----HHHHhCCCCCCHHhHHHHHHHHHhcCChhHH-HHHHH----HHhhCC--c--cc--
Q 047659 116 SFLIENYVRIGKIDESVEIF----AYMSDMGIYLSPDLVQRLMSCLVDSNSVGQY-YKLCR----AMRGKG--F--CV-- 180 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~----~~~~~~--~--~~-- 180 (619)
.+.+.|....|.++. +-..+.+.+++......++..+.....-+-. ..+.+ +..+.+ + ++
T Consensus 64 -----~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~L 138 (336)
T 3lpz_A 64 -----TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPEL 138 (336)
T ss_dssp -----HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHH
T ss_pred -----HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHH
Confidence 244455555544443 3334455666776666677666544432111 11111 111111 1 33
Q ss_pred hHHHHHHHHhcCCHHHHHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~ 201 (619)
...+...|.+.+++.+|...|
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHH
Confidence 555666666666666666555
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=69.42 E-value=66 Score=29.15 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccH
Q 047659 36 NAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDY 115 (619)
Q Consensus 36 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (619)
..-+......|++=+|.+.++.+. .=+.+++++++|.+++..-..
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~------------~Ry~~~~~~~eAidlL~~ga~----------------------- 61 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA------------NRYVRSKSYEHAIELISQGAL----------------------- 61 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHhhccChHHHHHHHHHHH------------HHHHHhcCHHHHHHHHHHHHH-----------------------
Confidence 344455566788888888877655 556677888888877655543
Q ss_pred HHHHHHHHHcCChhhHHHH----HHHHHhCCCCCCHHhHHHHHHHHHhcCChh-----HHHHHHHHHhhCCc----cc--
Q 047659 116 SFLIENYVRIGKIDESVEI----FAYMSDMGIYLSPDLVQRLMSCLVDSNSVG-----QYYKLCRAMRGKGF----CV-- 180 (619)
Q Consensus 116 ~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~A~~~~~~~~~~~~----~~-- 180 (619)
.+.+.|....|-++ .+-..+.+.+++......++..+..-...+ -..+...+..+.+. ++
T Consensus 62 -----~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~L 136 (312)
T 2wpv_A 62 -----SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYL 136 (312)
T ss_dssp -----HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHH
T ss_pred -----HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHH
Confidence 24455666555543 344445566677777777777665433211 11112222222211 33
Q ss_pred hHHHHHHHHhcCCHHHHHHHH
Q 047659 181 YEFLMNGLLRKGVIENAFHMH 201 (619)
Q Consensus 181 ~~~l~~~~~~~~~~~~A~~~~ 201 (619)
+..+...|.+.|++.+|...|
T Consensus 137 H~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 137 HNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHH
Confidence 566666666666666666544
No 274
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.25 E-value=1.3e+02 Score=30.56 Aligned_cols=138 Identities=6% Similarity=-0.095 Sum_probs=71.9
Q ss_pred HHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHH
Q 047659 37 AILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYS 116 (619)
Q Consensus 37 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (619)
.-+...++.|+++.+..+...+.. .....|..........+.. ...-+...+..+|+.+-. +....
T Consensus 11 ~~a~~a~~~~~~~~~~~l~~~l~~-~pL~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~-----------~~Lr~ 76 (618)
T 1qsa_A 11 AQIKQAWDNRQMDVVEQMMPGLKD-YPLYPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPA-----------RTLQS 76 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT-STTHHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHH-----------HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcC-CCcHHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhH-----------HHHHH
Confidence 334456678888888877776653 1223333322222222211 122445555555554321 11344
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc---cchHHHHHHHHhcCC
Q 047659 117 FLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF---CVYEFLMNGLLRKGV 193 (619)
Q Consensus 117 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 193 (619)
.-+..+.+.+++...+.++.. ++.+...--....+....|+..+|......+-..+. +.+..++..+.+.|.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC
Confidence 455566667777666654432 222555555566667777777777776666554443 336666666555443
No 275
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.02 E-value=80 Score=27.82 Aligned_cols=67 Identities=10% Similarity=-0.108 Sum_probs=26.7
Q ss_pred HhhccccccccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccC
Q 047659 11 VWRSINKCYCSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSD 78 (619)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 78 (619)
+|+...+.....+...+.+-++..-...+..+.+.|. +.+...+..+...+++......+..+.+.|
T Consensus 16 l~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3343333333333334443344333333444444442 233333333333333444444444554444
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.92 E-value=25 Score=32.63 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047659 491 HTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN--ISVGLHMFKLMERNGVAPDIAIYNVL 564 (619)
Q Consensus 491 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l 564 (619)
.+.++.-|...|+.++|...++++....+. .......+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 467788888889999999999888632211 12233444445444333 34577777777777665444444333
No 277
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=60.77 E-value=60 Score=27.17 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM 141 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 141 (619)
++.|..+++.+-...+-+.......+.. +-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~l------lk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKL------VKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH------HHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHH------HHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4578888888877765444433333322 3445667788999999999999998764
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.78 E-value=50 Score=26.07 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYL 145 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 145 (619)
.|...+..+-..|++.+|.++|+..++.+-.|
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 66667777777777777777777777766665
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.42 E-value=31 Score=29.26 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047659 540 SVGLHMFKLMERNGVAP-DIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPDI 593 (619)
Q Consensus 540 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 593 (619)
+.+..+|..|..+|+.- -...|......+...|++++|.++|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 56778888888887754 3557888888888899999999999998887777743
No 280
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.81 E-value=29 Score=27.83 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhC--CCCCCHHhHHHHHHHH
Q 047659 80 RDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDM--GIYLSPDLVQRLMSCL 157 (619)
Q Consensus 80 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~ 157 (619)
.+.+.+.+++.++..+-.... -...++..+...+++-.|.++++.+.+. ++..+..|.+..+..+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-------------qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L 79 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-------------QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLL 79 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-------------HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCH-------------HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 455555666666554433221 3456666666777788888888888776 6667788888888888
Q ss_pred HhcCCh
Q 047659 158 VDSNSV 163 (619)
Q Consensus 158 ~~~~~~ 163 (619)
.+.|-.
T Consensus 80 ~e~Glv 85 (162)
T 4ets_A 80 EEAEMV 85 (162)
T ss_dssp HHTTSE
T ss_pred HHCCCE
Confidence 777754
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.95 E-value=25 Score=26.90 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCcCHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN--ISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
..+.++.-|...|+.++|...++++....+. .......+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3567888899999999999999998522111 12333444445555432 3567777877777665544443
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.41 E-value=57 Score=23.42 Aligned_cols=80 Identities=8% Similarity=-0.042 Sum_probs=41.0
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
....++|..+-+.+...+. ....-..-+..+..+|+|++|..+.+... .||.-..+.-+-.+.|-.+++...+..+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCEWHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3456777777766655432 12222233345667777777766544433 2333333333334556666666555555
Q ss_pred HHCC
Q 047659 205 IQRG 208 (619)
Q Consensus 205 ~~~~ 208 (619)
...|
T Consensus 95 a~sg 98 (115)
T 2uwj_G 95 GGSS 98 (115)
T ss_dssp HTCS
T ss_pred HhCC
Confidence 5554
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.70 E-value=77 Score=25.39 Aligned_cols=56 Identities=11% Similarity=-0.106 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHH
Q 047659 81 DVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPD 148 (619)
Q Consensus 81 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 148 (619)
+.+..+|..+..+.-...-++ .|...+..+-..|++.+|.++|+..++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~Al------------fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQ------------FYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 446777777777644433222 78888888888999999999999998887776443
No 284
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.21 E-value=61 Score=23.34 Aligned_cols=80 Identities=10% Similarity=-0.029 Sum_probs=40.1
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHHHHHHH
Q 047659 125 IGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFHMHRQV 204 (619)
Q Consensus 125 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 204 (619)
....++|..+-+.+...+. ....-..-+..+..+|+|++|..+.+... .||.-..+.-+-.+.|-.+++...+..+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEYRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3456677776666655432 12222223345567777777766655443 2333222333334555555555555555
Q ss_pred HHCC
Q 047659 205 IQRG 208 (619)
Q Consensus 205 ~~~~ 208 (619)
...|
T Consensus 96 a~sg 99 (116)
T 2p58_C 96 ARSQ 99 (116)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 4444
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.91 E-value=86 Score=30.75 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL 157 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 157 (619)
.|+.|+-.....|+.-+|.-.|-+.+.. ..|-+.+...+...+
T Consensus 188 ~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 188 PYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHH
Confidence 4444444444444444444444444333 233444444444333
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.59 E-value=1e+02 Score=25.54 Aligned_cols=92 Identities=11% Similarity=-0.080 Sum_probs=38.7
Q ss_pred CChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047659 211 PNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILI 290 (619)
Q Consensus 211 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 290 (619)
++..+....+.++.+.+..+ +...+..+.. .++...-...+.++...|+.+ +...+..+.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444444444444432 2222333321 334444444455555554432 3333333332 23444445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047659 291 DGLFKAGRLKEGNELLLTALD 311 (619)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~ 311 (619)
.++.+.+. ..+...+..+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 55555554 333444444443
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.37 E-value=1.6e+02 Score=27.31 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 047659 456 FNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVITHTVLIRGIASQGS--LSSAILLFFQMLKRGLTP 521 (619)
Q Consensus 456 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p 521 (619)
...++.-|...++.++|.+.++++....+. .......+..++-+.++ .+....++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 467888888999999999999988632211 12233444445544333 345667777777666443
No 288
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.24 E-value=72 Score=24.88 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
-...++..+...+.+-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34566666666677778888888888777777888888888888777654
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.36 E-value=1.2e+02 Score=26.18 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC--CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 047659 459 LMDGCCRLKRATDTVKLFMLMGMY--NIKP----DVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHG 532 (619)
Q Consensus 459 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 532 (619)
-++.+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467777788888888887765431 1121 0111112222222222222233333333 22 3344445555666
Q ss_pred HHccCChHHHHHHHHHHHH
Q 047659 533 LFKGKNISVGLHMFKLMER 551 (619)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~ 551 (619)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6677777777776655543
No 290
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.83 E-value=39 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhc
Q 047659 68 AQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSL 108 (619)
Q Consensus 68 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (619)
..++..+...|++++|..-|-+++.-.|.+.+.+..+...+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~tl 61 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTL 61 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 35778888889988888888888877666655554444443
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.24 E-value=94 Score=24.39 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
-...++..+...+.+-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 28 qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 28 QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34456666667777888888888888777777888888888888777754
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.76 E-value=24 Score=28.00 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCcCHHH
Q 047659 490 THTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN--ISVGLHMFKLMERNGVAPDIAI 560 (619)
Q Consensus 490 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~ 560 (619)
..+.++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567888899999999999999998531111 12334444445554332 4557777777777665544443
No 293
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.72 E-value=85 Score=22.58 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.1
Q ss_pred hcCCcchHHHHH
Q 047659 225 INGQIGNASSLF 236 (619)
Q Consensus 225 ~~~~~~~A~~~~ 236 (619)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T 2uwj_G 51 NQGRYQEALAFA 62 (115)
T ss_dssp HTTCHHHHHGGG
T ss_pred cchhHHHHHHhc
Confidence 344444444433
No 294
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=44.36 E-value=57 Score=24.90 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+.+-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3456666777788899999999999888888899999999998887754
No 295
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=43.68 E-value=89 Score=22.52 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=18.9
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
...|++++|..+.+.. +.||...|.++... +.|-.+++..-+..+.
T Consensus 51 mNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 51 MNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3444444444444433 34444444333322 3344444444443333
No 296
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.24 E-value=71 Score=24.92 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+ +-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 445556666666 778889999888887777888888888888777754
No 297
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.83 E-value=83 Score=25.09 Aligned_cols=52 Identities=13% Similarity=0.030 Sum_probs=33.2
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HHhcCChhHHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYL--SPDLVQRLMS-C-----LVDSNSVGQYYKLCRAM 173 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~ 173 (619)
+...|++-+|-++++........+ ....|..||. + ..+.|+...|..++.+.
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444599999999999998775555 4455666666 2 13445555555555554
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.77 E-value=1.5e+02 Score=32.18 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcC
Q 047659 215 TCNKILKRLCINGQIGNASSLFDVLLLVGPKPNV----VTFSTLINAFCKEA 262 (619)
Q Consensus 215 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 262 (619)
-|..++..+-+.+.++.+.+.-...++.-...|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677788888888888888777777654222222 35666666665543
No 299
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.90 E-value=71 Score=21.70 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHCCCCcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 047659 549 MERNGVAPDIAIYNVLLNMLIKEC-NLDAALKLFGQLTDRGLEPDIITYNTIICGYCSLNS 608 (619)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 608 (619)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3445555444332 2233333332 334455566665554444455555555555555554
No 300
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.86 E-value=51 Score=25.55 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+++-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456666666777888999999998888888888888888888877754
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.46 E-value=1.8e+02 Score=25.01 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 047659 256 NAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~ 275 (619)
+.+....++++|.+++++..
T Consensus 26 Dv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 34444455555555544443
No 302
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.79 E-value=1.4e+02 Score=23.24 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=31.8
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 204 VIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44455444443 33455555555566667777777766655555555444445554444
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.35 E-value=1.1e+02 Score=23.72 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+.|+.++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445444433 333444444444 5566666666665555555444444444444444
No 304
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.06 E-value=69 Score=22.78 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcC
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLG 109 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (619)
.++..+...|+++.|..-|-+++.-.|.+.+.+..+...+|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~TlP 65 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLP 65 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhCC
Confidence 57778888888888888777777766655554444444443
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.56 E-value=1.5e+02 Score=22.70 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=30.5
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 204 VIQRGFVPNIVTCNKILKRLCING-QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34455444443 334455555554 56667777777766655555555444444444444
No 306
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.34 E-value=70 Score=24.59 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+ .+-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566666555 6778888888888877777888888888877776654
No 307
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.72 E-value=1.2e+02 Score=21.56 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHH
Q 047659 541 VGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQL-----TDRGLEPDIITYNTIICG 602 (619)
Q Consensus 541 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~~~~~~ll~~ 602 (619)
.|.++.++....|+.|+..+...++..|...+- + +.++.++. ...|..|+..+++.+=+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEhE 91 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEHE 91 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 345566666666677777777777776666553 1 22222221 134667777666655433
No 308
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.42 E-value=3.8e+02 Score=27.36 Aligned_cols=213 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHhhcCCCcccHHHH
Q 047659 39 LANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRDSLGDFGCDYSFL 118 (619)
Q Consensus 39 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 118 (619)
+..+.-.|+++.|++++-.. +...-.+++-++...|-+.. =+.++...+..+.. -+..|
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~~l-------------N~arL 359 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKRDI-------------RFANI 359 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC----------------------------------CHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC----CCcccccCCCcccc-------------cHHHH
Q ss_pred HHHHHHc---CChhhHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCChhHHH-----------HHHHHHhh-------C
Q 047659 119 IENYVRI---GKIDESVEIFAYMSDMG-IYLSPDLVQRLMSCLVDSNSVGQYY-----------KLCRAMRG-------K 176 (619)
Q Consensus 119 ~~~~~~~---g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~-------~ 176 (619)
+..|.+. .++.+|++.|--+...+ ..--...+..+-......+.++.-+ .++++... .
T Consensus 360 I~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~ 439 (661)
T 2qx5_A 360 LANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEK 439 (661)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHH
Q ss_pred Cc--cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcc----------------hHHHHHHH
Q 047659 177 GF--CVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIG----------------NASSLFDV 238 (619)
Q Consensus 177 ~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----------------~A~~~~~~ 238 (619)
.. ......+.-+...|++++|..++..+-+. ..-....|.++.-....-... .|..+.+.
T Consensus 440 ~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~ 517 (661)
T 2qx5_A 440 EFLHTITEQAARRADEDGRIYDSILLYQLAEEY--DIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASI 517 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Q ss_pred HHh------CCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 047659 239 LLL------VGPKPNVVTFSTLINA-----FCKEAKLEKAFQLYNLM 274 (619)
Q Consensus 239 ~~~------~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m 274 (619)
... .-...+..|+..|+.. +...|+++.|++.++.+
T Consensus 518 y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 518 YFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 309
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=34.37 E-value=74 Score=27.85 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHcCChhhHHHHHH
Q 047659 118 LIENYVRIGKIDESVEIFA 136 (619)
Q Consensus 118 l~~~~~~~g~~~~A~~~~~ 136 (619)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444566677655544443
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.21 E-value=1.6e+02 Score=23.08 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcC-CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 204 VIQRGFVPNIVTCNKILKRLCING-QIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.++..+..|..--+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34455444443 334444454444 55666677776666655555555444445554444
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.06 E-value=1.6e+02 Score=24.84 Aligned_cols=187 Identities=13% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHhccHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCC
Q 047659 394 LIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV---VCSLLINGLMGDALRFFFQSVRMTLIPNLFIFN--TLMDGCCRLKR 468 (619)
Q Consensus 394 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 468 (619)
.+...++.|+.+.+..+++.+.+.+..++.. ..+.+..+....-.++++.+.+.|..++..... +.+...+..|+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Q ss_pred hhHHHHHHHHHh----hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh---HHHHHHHHHccCChHH
Q 047659 469 ATDTVKLFMLMG----MYNIKPDVITHTVLIRGIASQGSLSSAILLFFQMLKRGLTPDVIT---YSAIIHGLFKGKNISV 541 (619)
Q Consensus 469 ~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~ 541 (619)
.+-...+++... ... ..+....+.+..+..... .++++.+.+.|..++... -.+.+...+..|+.+-
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTEC-----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCC-----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047659 542 GLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+..+++. ...+......-...+...+..|+.+ +++.+.+.|..|+
T Consensus 166 v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 166 VQLLLQH--GANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHT--TCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.64 E-value=1.3e+02 Score=21.44 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHhhCCccchHHHHHHHHhcCCHHHHHH
Q 047659 161 NSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVIENAFH 199 (619)
Q Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 199 (619)
.+.+.|.+++..+..+|+..|...+.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 466788888888888887777777777766666555543
No 313
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.34 E-value=1.8e+02 Score=23.61 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=14.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 395 IDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 395 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3334445555544555666666665554
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.06 E-value=2.1e+02 Score=23.61 Aligned_cols=139 Identities=16% Similarity=0.043 Sum_probs=64.0
Q ss_pred ChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047659 212 NIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILID 291 (619)
Q Consensus 212 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 291 (619)
+...-...+.++...+..+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 3333444444444444332 2233333322 345555555566666666533 3333333332 245555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047659 292 GLFKAGRLKEGNELLLTALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQ 366 (619)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 366 (619)
++...++.+ +...+..+.. .++..+-...+.++.+.++ ..+...+..+.+. ++...-...+.++.+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 666666543 3333333332 2355555555555555555 3344444444442 3455544445554443
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.14 E-value=1.6e+02 Score=27.12 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 047659 321 FSSVMDAYVGIGDVGRAVQTYDRML 345 (619)
Q Consensus 321 ~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (619)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556677777777777777777664
No 316
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.98 E-value=1.9e+02 Score=22.99 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 047659 356 YSILIKGLCQQGRLVEACGLFGQVLIRRLEP--SLLTYSSLID-G-----FCKSGKLRDGFSLYDNMIK 416 (619)
Q Consensus 356 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 416 (619)
|...+..+ ..|++-+|.++++..-.....+ ....|..+|+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33334333 4599999999999998775555 4556777777 2 3457999999999988765
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.90 E-value=1.8e+02 Score=22.91 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 252 STLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 252 ~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666666653
No 318
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.59 E-value=73 Score=26.68 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=32.7
Q ss_pred hHHHHHHHhhc-CCCCccH---------HHHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 50 PAIQFFKWTHN-CVSSPNI---------AQLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 50 ~A~~~~~~~~~-~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
.|+.+++.+.. .+-+... .+.+.+|.+.|.+++|.+++++....++.+
T Consensus 90 SAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 90 SAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 56666666665 2111222 245567889999999999999999875544
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.13 E-value=1.5e+02 Score=23.59 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC
Q 047659 205 IQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLV--GPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 205 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 262 (619)
.+.|...+.. ...++..+...+..-.|.++++.+.+. ++..+..|-..-+..+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3446555443 455566666666677777777777665 55555555444455555555
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.89 E-value=1e+02 Score=26.65 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=31.4
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHH-------hHHHHHHHHH--hcCChhHHHHHHHHH
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPD-------LVQRLMSCLV--DSNSVGQYYKLCRAM 173 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~A~~~~~~~ 173 (619)
+...++.|+.+....+++.+.+.+..++.. -.+.+..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 445567789888888888776655544422 2233333322 456666665555543
No 321
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=29.65 E-value=50 Score=29.05 Aligned_cols=213 Identities=11% Similarity=0.095 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh---hHHHHHh
Q 047659 358 ILIKGLCQQGRLVEACGLFGQVLIRRLEPSLL---TYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPDAV---VCSLLIN 431 (619)
Q Consensus 358 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~ 431 (619)
..+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++.. ..+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 4455667788876555444 455443322 11234455566777654 44444555444321 1122222
Q ss_pred ccHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh-------------hHHHHH
Q 047659 432 GLMGDALRFFFQSVRMTLIPNL---FIFNTLMDGCCRLKRATDTVKLFMLMGMYNIKPDVI-------------THTVLI 495 (619)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~ 495 (619)
+....-.++++.+.+.|..++. ..++.+ ...+..|+.+- ++.+.+.|..++.. ..+ .+
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L 152 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGAT-AL 152 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCCc-HH
Confidence 2111223344455555554432 222333 33445566543 33444444444322 112 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHH
Q 047659 496 RGIASQGSLSSAILLFFQMLKR-GLTPD---VITYSAIIHGLFKGKNISVGLHMFKLMERNGVAPDIAI--YNVLLNMLI 569 (619)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 569 (619)
...+..|+.+-+.. +.+. |..++ ....+.+..+ +..++.....++++.+.+.|..++... -...+...+
T Consensus 153 ~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 153 MDAAEKGHVEVLKI----LLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHTCHHHHHH----HHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHH----HHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 34445666654433 3333 44443 2223334433 345555555677777777776655431 223445556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC
Q 047659 570 KECNLDAALKLFGQLTDRGLEPD 592 (619)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~g~~p~ 592 (619)
+.|+.+-+..+++. .|..++
T Consensus 228 ~~~~~~~v~~Ll~~---~g~~~~ 247 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQ---EHIEIN 247 (285)
T ss_dssp HTTCHHHHHHHHHS---SSCCTT
T ss_pred HcCCHHHHHHHHhc---cCCCcc
Confidence 66776544433331 455554
No 322
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.61 E-value=2.3e+02 Score=23.07 Aligned_cols=45 Identities=11% Similarity=-0.093 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 047659 114 DYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNS 162 (619)
Q Consensus 114 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (619)
.....+..+.+.|..+. ...+-.+.. .+++......+.++.+.+.
T Consensus 30 vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCC
Confidence 34444445555554332 222223322 2344444444455544444
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.52 E-value=79 Score=24.83 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcC-ChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 047659 115 YSFLIENYVRIG-KIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSV 163 (619)
Q Consensus 115 ~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (619)
...++..+...+ .+-.|.++++.+.+.++..+..|.+..+..+.+.|-.
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345555555555 6778888888888877777888888888888777754
No 324
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=29.15 E-value=2.1e+02 Score=22.50 Aligned_cols=40 Identities=0% Similarity=-0.037 Sum_probs=20.3
Q ss_pred HHHHHHHHHccCCchhHHHHHHHhhcCCCCccHHHHHHHH
Q 047659 35 ANAILANLIKTNNPTPAIQFFKWTHNCVSSPNIAQLIHVL 74 (619)
Q Consensus 35 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 74 (619)
+...+..+...|-.++.+.-++.+..+.++.....++..+
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~F 49 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLF 49 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 3444555566676665544444444344444445554444
No 325
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.12 E-value=2.3e+02 Score=23.01 Aligned_cols=141 Identities=10% Similarity=-0.122 Sum_probs=59.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047659 145 LSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKG-FCVYEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRL 223 (619)
Q Consensus 145 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 223 (619)
+++......+..+.+.+... +...+..+.... +.+....+.++...+..+. ...+..+.. .++.......+.++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 45555555555555555432 233333333211 1223344444444444322 222323332 24555555555555
Q ss_pred HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047659 224 CINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYSILIDGLFKAGR 298 (619)
Q Consensus 224 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 298 (619)
...+..+. ...+..+.. .++...-...+.++.+.++. .+...+..+.. .++..+-...+.++...|.
T Consensus 101 ~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 101 GQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 55555432 223333322 33444444455555555442 23333333332 1344444445555555444
No 326
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.90 E-value=1.5e+02 Score=28.51 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=28.4
Q ss_pred CCchhHHHHHHHhhcCCCCccHHHHHHHHHccCChhHHHHHHHHHHHh
Q 047659 46 NNPTPAIQFFKWTHNCVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQ 93 (619)
Q Consensus 46 ~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 93 (619)
.+++.|+.+....--|.....|..-+..+...|++++|.++--..+..
T Consensus 343 ~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g 390 (494)
T 1bpo_A 343 QNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG 390 (494)
T ss_dssp CCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG
T ss_pred CCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc
Confidence 344444444443333444444555567788889999888876665543
No 327
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.00 E-value=2.1e+02 Score=21.71 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 047659 252 STLINAFCKEAKLEKAFQLYNLMM 275 (619)
Q Consensus 252 ~~l~~~~~~~~~~~~a~~~~~~m~ 275 (619)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555566666666655553
No 328
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.79 E-value=1.5e+02 Score=19.99 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHccC-ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 047659 513 QMLKRGLTPDVITYSAIIHGLFKGK-NISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECN 573 (619)
Q Consensus 513 ~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 573 (619)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455676666543 34455555543 455677777777776555666666666667666664
No 329
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.70 E-value=4e+02 Score=24.98 Aligned_cols=166 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHccCCchhH--HHHHHHhhc-CCCCccHHHHHHHHHccCChhHHHHHHHHHHHhcCCchhHHHHHHh
Q 047659 30 LQFNQANAILANLIKTNNPTPA--IQFFKWTHN-CVSSPNIAQLIHVLLQSDMRDVASHVFDKMVIQFGKTYNFFRLFRD 106 (619)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~A--~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 106 (619)
++..+++.++.......+++.+ ..-++.+.. ..=-..-..+...+......+.-.++|+..+.......+.++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~l~~~~~~le~~~~~kLWhqlt~~L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~---- 77 (393)
T 4b4t_O 2 FNNHEIDTILSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLS---- 77 (393)
T ss_dssp CHHHHHHHHHHHHHCSSCSSCCSSHHHHHHHHCCSSCCSCCCTTHHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHH----
T ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhChhcchHHHHHHHHHHHHHHHhcCHHH----
Q ss_pred hcCCCcccHHHHHHHHHHcCChhhHHHHHHHH----------------HhCCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 047659 107 SLGDFGCDYSFLIENYVRIGKIDESVEIFAYM----------------SDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLC 170 (619)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 170 (619)
.-..++.......++++|.++++.+ .+.....-......+++.|...|+.+.|...+
T Consensus 78 -------lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l 150 (393)
T 4b4t_O 78 -------VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLL 150 (393)
T ss_dssp -------HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HHHhh-------CCccc----hHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047659 171 RAMRG-------KGFCV----YEFLMNGLLRKGVIENAFHMHRQVIQ 206 (619)
Q Consensus 171 ~~~~~-------~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (619)
+++.. ..+.+ |......+...+++..+....-....
T Consensus 151 ~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 151 DDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
No 330
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.49 E-value=18 Score=23.11 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=29.9
Q ss_pred ccCcccccccCChhhHHHHHHHHHccCCchhHHHHHHHhhc
Q 047659 20 CSESKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTHN 60 (619)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 60 (619)
...++.-+|+++.+.+..++... +|+.+.|+..+-.+..
T Consensus 13 l~~L~emFP~ld~~~I~~vL~a~--~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 13 LKAIQDMFPNMDQEVIRSVLEAQ--RGNKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHCSSSCHHHHHHHHTTT--TTCHHHHHHHHHHSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc--CCCHHHHHHHHHcCcC
Confidence 34456668888888888888775 8888988888877664
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.39 E-value=2.1e+02 Score=25.24 Aligned_cols=15 Identities=0% Similarity=0.027 Sum_probs=7.2
Q ss_pred HHHcCChhhHHHHHH
Q 047659 122 YVRIGKIDESVEIFA 136 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~ 136 (619)
.+..|+.+-+..+++
T Consensus 38 A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 38 AIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344566554444443
No 332
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.30 E-value=28 Score=30.36 Aligned_cols=25 Identities=4% Similarity=0.026 Sum_probs=12.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC
Q 047659 188 LLRKGVIENAFHMHRQVIQRGFVPN 212 (619)
Q Consensus 188 ~~~~~~~~~A~~~~~~~~~~~~~~~ 212 (619)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3345555555555555555443333
No 333
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=24.99 E-value=4.4e+02 Score=24.89 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=29.2
Q ss_pred cccCChhhHHHHHHHHHccC--CchhHHHHHHHhhcCCCCccHHHHHHHH
Q 047659 27 ISDLQFNQANAILANLIKTN--NPTPAIQFFKWTHNCVSSPNIAQLIHVL 74 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 74 (619)
++..+...+-.-+-.+++.| .+..++.+.+.+..+.+...|......+
T Consensus 103 i~~~dRa~LidD~~~La~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~~~l 152 (419)
T 3rjo_A 103 VSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGLNEL 152 (419)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGGGCCSHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 33334444444444566666 5568888888777666767776555443
No 334
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.81 E-value=3.8e+02 Score=24.05 Aligned_cols=104 Identities=13% Similarity=0.028 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047659 303 NELLLTALDRGLKLDV---VVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLP---NVISYSILIKGLCQQGRLVEACGLF 376 (619)
Q Consensus 303 ~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 376 (619)
..+.+.+.+.|..++. .-.+. +...+..|..+.+..+++. .|..+ |..-.+.| ...++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL-~~A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHH-HHHHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHH-HHHHHcCCHH----HH
Confidence 3444555666654432 22222 3344566666655544432 12222 11112222 3334556654 33
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047659 377 GQVLIRRLEPSLLTYSSLIDGFCKSGKLRDGFSLYDNMIKRGLKPD 422 (619)
Q Consensus 377 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 422 (619)
+.+++.|..++..+ .+...++.|+.+ +.+.+.+.|-.||
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 44456666665443 233334555543 4445566665554
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.78 E-value=80 Score=20.09 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=14.3
Q ss_pred chHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047659 230 GNASSLFDVLLLVGPKPNVVTFSTLINAF 258 (619)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 258 (619)
++|.+.|.+|++..-.++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 44555555555433333445555555554
No 336
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=24.40 E-value=83 Score=19.09 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=24.1
Q ss_pred cccCChhhHHHHHHHHHccCCchhHHHHHHHh
Q 047659 27 ISDLQFNQANAILANLIKTNNPTPAIQFFKWT 58 (619)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 58 (619)
||..+++.+..++... +|+.+.|...+-..
T Consensus 15 FP~~~~~~ik~~L~~~--~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 15 FPAISKSKLQVHLLEN--NNDLDLTIGLLLKE 44 (49)
T ss_dssp CSSSCHHHHHHHHHHT--TTCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHc--CCCHHHHHHHHHhc
Confidence 6778888888888776 89999998887554
No 337
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=23.69 E-value=1.3e+02 Score=21.28 Aligned_cols=50 Identities=14% Similarity=-0.029 Sum_probs=31.4
Q ss_pred HHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHH-----HhcCChhHHHHHHHHH
Q 047659 122 YVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCL-----VDSNSVGQYYKLCRAM 173 (619)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~ 173 (619)
+...|++-+|-++++......+.|....|..++.+- .+.|+. |..++.+.
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 445599999999999998766444445566666542 244554 55555544
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.59 E-value=1.8e+02 Score=25.56 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=7.0
Q ss_pred HHHhcCCHHHHHHHHH
Q 047659 362 GLCQQGRLVEACGLFG 377 (619)
Q Consensus 362 ~~~~~~~~~~a~~~~~ 377 (619)
..+..|+.+-+.-+++
T Consensus 167 ~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 167 ITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHH
Confidence 3344455444444433
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.84 E-value=2.7e+02 Score=21.66 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 204 VIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 204 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.++..+..|..-.+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455433333 44555555555566677777777766655555555444455555544
No 340
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.73 E-value=3.3e+02 Score=22.59 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCCh-----HHHHHHHHHHHHCCCC
Q 047659 500 SQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKNI-----SVGLHMFKLMERNGVA 555 (619)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~ 555 (619)
+..|.+.|+-++.+|++.| .|....-..++-+.-..|.- ..|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4567778888888888877 65555555555555555532 2344445555555554
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.69 E-value=2.6e+02 Score=26.99 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred cCCCcccHHHHHHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCc-cc--hHHH
Q 047659 108 LGDFGCDYSFLIENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGF-CV--YEFL 184 (619)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l 184 (619)
+|+.+..|..-...+...|++++|..+--..... .-.++.+.+.+-.+=...|+..-.+.+|..+.+.+. +. -..+
T Consensus 357 LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl 435 (494)
T 1bpo_A 357 LAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLEL 435 (494)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHH
Confidence 4444445555566778888888888877655432 334666655444433344555555555555555443 22 2333
Q ss_pred HHHHHhcCCHHHHH
Q 047659 185 MNGLLRKGVIENAF 198 (619)
Q Consensus 185 ~~~~~~~~~~~~A~ 198 (619)
++.....|+.+-..
T Consensus 436 ~r~vL~q~r~~lle 449 (494)
T 1bpo_A 436 CRPVLQQGRKQLLE 449 (494)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred hHHHHhccHHHHHH
Confidence 44444444443333
No 342
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.49 E-value=81 Score=20.69 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=21.8
Q ss_pred cccccccCChhhHHHHHHHHHccCCchhHHHHHHHhh
Q 047659 23 SKTHISDLQFNQANAILANLIKTNNPTPAIQFFKWTH 59 (619)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 59 (619)
++.-||+++++.+..++..- +|+.+.|++.+-.+.
T Consensus 25 L~~MFP~lD~~vI~~vL~a~--~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 25 FKTMFPNMDYDIIECVLRAN--SGAVDATIDQLLQMN 59 (67)
T ss_dssp HHHHCSSSCHHHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHc--CCCHHHHHHHHHhcC
Confidence 34456666776666666654 667776666665554
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.44 E-value=3.3e+02 Score=22.52 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHccCC-----hHHHHHHHHHHHHCCC
Q 047659 500 SQGSLSSAILLFFQMLKRGLTPDVITYSAIIHGLFKGKN-----ISVGLHMFKLMERNGV 554 (619)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 554 (619)
+..|.+.|+-++.+|++.|..|....-..++-+.-..|. ...|...++.....|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 456777777777777777766555544445544444442 2234444444455443
No 344
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.05 E-value=1.9e+02 Score=23.47 Aligned_cols=183 Identities=13% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHcCChhhHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccc------hHHHHHHHHhcC
Q 047659 119 IENYVRIGKIDESVEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCV------YEFLMNGLLRKG 192 (619)
Q Consensus 119 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~l~~~~~~~~ 192 (619)
+...+..|+.+....++..-...--..+..-++.+..+..... .++++.+.+.+.++ -...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047659 193 VIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEAKLEKAFQLYN 272 (619)
Q Consensus 193 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 272 (619)
+.+-...+++. ....+......-...+...+..|+.+-+..+++.-...--..+..-.+.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHH
Q 047659 273 LMMEMDLVPDLIIYS--ILIDGLFKAGRLKEGNELLL 307 (619)
Q Consensus 273 ~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~ 307 (619)
.+.+.|..++..... +.+......|+.+-+.-+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.02 E-value=1.2e+02 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHhcCCc
Q 047659 69 QLIHVLLQSDMRDVASHVFDKMVIQFGKT 97 (619)
Q Consensus 69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 97 (619)
+.+.++.+.|.+++|.++|++....++.+
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 45568889999999999999998876554
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.62 E-value=2.3e+02 Score=20.27 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHccC
Q 047659 508 ILLFFQMLKRGLTPDVITYSAIIHGLFKGK 537 (619)
Q Consensus 508 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 537 (619)
..+.++...-|+.|+..+..-+++.|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 344444444455555555555555555444
No 347
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.23 E-value=1.4e+02 Score=25.14 Aligned_cols=221 Identities=9% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCc-cc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCcch
Q 047659 154 MSCLVDSNSVGQYYKLCRAMRGKGF-CV-YEFLMNGLLRKGVIENAFHMHRQVIQRGFVPNIVTCNKILKRLCINGQIGN 231 (619)
Q Consensus 154 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 231 (619)
+...++.|+.+....+++.-...+. +. -...+...+..|+.+-..-+++.-.......+..-.+.+..+.....
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~---- 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH---- 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC----
Q ss_pred HHHHHHHHHhCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHH
Q 047659 232 ASSLFDVLLLVGPKPNVVTFS--TLINAFCKEAKLEKAFQLYNLMMEMDLVPDLIIYS--ILIDGLFKAGRLKEGNELLL 307 (619)
Q Consensus 232 A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~ 307 (619)
.++++.+.+.|..++..... +.+...+..|+.+ +++.+.+.|..++..... +.+...+..+......+++.
T Consensus 89 -~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~ 163 (240)
T 3eu9_A 89 -LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163 (240)
T ss_dssp -HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred -HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047659 308 TALDRGLKLDVVVFSSVMDAYVGIGDVGRAVQTYDRMLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLE 385 (619)
Q Consensus 308 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (619)
+....--..+...-.+.+...+..|+.+-+..+++. ...+......-..-+....+.|+.+-+.-+++.....+..
T Consensus 164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC------
T ss_pred hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCcC
No 348
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.10 E-value=1.2e+02 Score=25.07 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047659 539 ISVGLHMFKLMERNGVAPDIAIYNVLLNMLIKECNLDAALKLFGQLTD 586 (619)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 586 (619)
.....++.+.++.. .-+..-.-.+|.++...|++++|.+++.++..
T Consensus 15 l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 15 TALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455544432 01222233668888899999999988887764
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.09 E-value=2.2e+02 Score=21.53 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047659 218 KILKRLCINGQIGNASSLFDVLLLVGPKPNVVTFSTLINAFCKEA 262 (619)
Q Consensus 218 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 262 (619)
.++..+...+..-.|.++++.+.+.++..+..|..-.+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444445555666666666666555545444444444444444
No 350
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.47 E-value=2.9e+02 Score=24.92 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=49.0
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 047659 269 QLYNLMMEMDLVPDLII--YSILIDGLFKAGRLKEGNELLLTALDRGLKL---DVVVFSSVMDAYVGIGDVGRAVQTYDR 343 (619)
Q Consensus 269 ~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~ 343 (619)
.+.+.+.+.|..++... -.+.+...+..|..+.+..++.. .|..+ |..-.+.|. ..+..|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHH
Confidence 34444566665554321 11234445566776655444321 12221 222223333 334556654 3444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047659 344 MLNGGFLPNVISYSILIKGLCQQGRLVEACGLFGQVLIRRLEPSL 388 (619)
Q Consensus 344 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 388 (619)
+.+.|..++..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 556676665443 333445566654 44556667766553
No 351
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.45 E-value=2.3e+02 Score=19.82 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCccchHHHHHHHHhcCCH
Q 047659 132 VEIFAYMSDMGIYLSPDLVQRLMSCLVDSNSVGQYYKLCRAMRGKGFCVYEFLMNGLLRKGVI 194 (619)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (619)
..+++.+.+.++- +..-...+-. .....++|..+++.+..+|+..|.....++...+..
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 3455555554433 3333332222 345566777777777776665566666666555543
Done!