Query 047660
Match_columns 171
No_of_seqs 148 out of 823
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 99.9 2.7E-27 5.9E-32 192.7 7.5 152 3-171 8-168 (237)
2 PF00335 Tetraspannin: Tetrasp 99.6 3.2E-17 6.9E-22 128.0 -5.1 132 3-134 1-150 (221)
3 cd03154 TM4SF3_like_LEL Tetras 95.7 0.00052 1.1E-08 48.2 -3.8 44 89-132 1-56 (100)
4 cd03160 CD37_CD82_like_LEL Tet 95.1 0.0016 3.5E-08 47.1 -3.0 40 93-132 2-55 (117)
5 cd03163 TM4SF8_like_LEL Tetras 95.0 0.0018 3.8E-08 45.9 -3.0 41 93-133 2-53 (105)
6 cd03161 TM4SF2_6_like_LEL Tetr 94.9 0.0025 5.5E-08 44.8 -2.3 40 94-133 2-52 (104)
7 cd03165 NET-5_like_LEL Tetrasp 94.4 0.0029 6.2E-08 44.1 -3.1 15 119-133 35-54 (98)
8 cd03164 CD53_like_LEL Tetraspa 94.1 0.0027 5.9E-08 43.4 -3.6 14 119-132 33-51 (86)
9 cd03159 TM4SF9_like_LEL Tetras 93.8 0.0047 1E-07 45.1 -3.1 40 94-133 2-52 (121)
10 cd03162 peripherin_like_LEL Te 93.7 0.01 2.2E-07 45.4 -1.4 29 106-134 16-58 (143)
11 cd03156 uroplakin_I_like_LEL T 91.4 0.064 1.4E-06 38.0 0.3 42 92-133 2-55 (114)
12 cd03127 tetraspanin_LEL Tetras 91.0 0.08 1.7E-06 35.5 0.5 26 141-171 38-63 (90)
13 cd03155 CD151_like_LEL Tetrasp 89.8 0.14 3E-06 36.3 0.8 15 119-133 36-55 (110)
14 cd03167 oculospanin_like_LEL T 89.5 0.14 3E-06 37.3 0.7 8 164-171 67-74 (120)
15 PF04156 IncA: IncA protein; 87.8 1.8 3.9E-05 33.8 6.0 21 10-30 6-26 (191)
16 cd03166 CD63_LEL Tetraspanin, 86.8 0.26 5.6E-06 34.2 0.6 15 119-133 33-52 (99)
17 PF05915 DUF872: Eukaryotic pr 85.3 2.3 4.9E-05 31.3 5.0 47 10-57 45-91 (115)
18 cd03158 penumbra_like_LEL Tetr 85.0 0.32 7E-06 35.1 0.4 40 94-133 2-52 (119)
19 PRK12585 putative monovalent c 83.1 19 0.00042 28.9 9.7 54 8-61 5-59 (197)
20 cd07912 Tweety_N N-terminal do 77.5 5.7 0.00012 35.5 5.6 28 50-77 217-244 (418)
21 KOG4433 Tweety transmembrane/c 77.4 5.1 0.00011 36.5 5.2 42 42-83 209-251 (526)
22 cd03157 TM4SF12_like_LEL Tetra 75.0 1.4 3.1E-05 31.5 1.0 27 107-133 18-55 (103)
23 PF11297 DUF3098: Protein of u 73.2 8.7 0.00019 25.8 4.3 22 11-32 6-27 (69)
24 PF04103 CD20: CD20-like famil 71.8 1.3 2.7E-05 32.8 0.0 68 14-83 5-72 (150)
25 PF10724 DUF2516: Protein of u 70.6 37 0.00079 24.4 8.3 27 6-32 3-29 (100)
26 PF09323 DUF1980: Domain of un 68.8 18 0.0004 28.2 6.1 39 45-83 35-86 (182)
27 PF06770 Arif-1: Actin-rearran 67.3 29 0.00062 28.0 6.8 54 13-66 3-65 (196)
28 COG4993 Gcd Glucose dehydrogen 66.5 15 0.00032 34.8 5.7 64 9-83 4-67 (773)
29 PF11127 DUF2892: Protein of u 66.3 25 0.00055 22.6 5.4 43 15-64 13-55 (66)
30 PF02932 Neur_chan_memb: Neuro 63.3 57 0.0012 23.9 8.3 36 63-98 50-85 (237)
31 PRK07946 putative monovalent c 60.0 32 0.0007 26.9 5.8 48 11-59 3-50 (163)
32 PF06341 DUF1056: Protein of u 59.6 48 0.001 21.9 6.1 47 3-58 6-52 (63)
33 PRK08389 putative monovalent c 59.4 64 0.0014 23.4 7.1 49 14-62 4-52 (114)
34 COG3247 HdeD Uncharacterized c 59.2 71 0.0015 25.5 7.7 51 14-68 21-71 (185)
35 PRK05715 NADH:ubiquinone oxido 56.7 65 0.0014 22.5 6.8 74 16-94 8-81 (100)
36 KOG4753 Predicted membrane pro 54.6 6 0.00013 29.4 0.9 44 14-57 56-99 (124)
37 PF03729 DUF308: Short repeat 54.6 52 0.0011 20.7 8.0 47 18-68 2-48 (72)
38 CHL00015 ndhE NADH dehydrogena 54.2 74 0.0016 22.4 6.5 75 17-94 8-82 (101)
39 PF09971 DUF2206: Predicted me 54.1 68 0.0015 28.2 7.5 39 57-97 198-242 (367)
40 PF11384 DUF3188: Protein of u 53.4 28 0.00062 21.7 3.7 21 39-59 22-42 (49)
41 PF04906 Tweety: Tweety; Inte 49.8 5.5 0.00012 35.4 0.0 28 50-77 194-221 (406)
42 cd03152 CD9_LEL Tetraspanin, e 49.0 5 0.00011 27.0 -0.3 39 94-132 2-53 (84)
43 PF07086 DUF1352: Protein of u 48.7 1.4E+02 0.003 23.8 10.4 82 8-92 40-121 (186)
44 PF15048 OSTbeta: Organic solu 48.0 26 0.00056 26.2 3.3 26 5-30 36-61 (125)
45 PF04156 IncA: IncA protein; 47.3 1.1E+02 0.0025 23.5 7.2 15 45-59 11-25 (191)
46 PRK12660 putative monovalent c 46.6 70 0.0015 23.3 5.5 50 12-62 2-51 (114)
47 TIGR00941 2a6301s03 Multicompo 44.9 84 0.0018 22.7 5.6 47 12-59 2-48 (104)
48 KOG4812 Golgi-associated prote 44.6 48 0.001 27.7 4.7 30 39-68 223-252 (262)
49 PF06724 DUF1206: Domain of Un 42.9 29 0.00062 22.9 2.7 20 13-32 48-67 (73)
50 PRK12659 putative monovalent c 39.6 1.5E+02 0.0032 21.7 8.6 48 12-60 2-49 (117)
51 PF13706 PepSY_TM_3: PepSY-ass 39.5 38 0.00083 19.5 2.6 24 43-66 10-33 (37)
52 PRK10209 acid-resistance membr 39.0 1.9E+02 0.0041 22.6 7.7 48 14-65 23-70 (190)
53 PRK08600 putative monovalent c 37.7 1.1E+02 0.0025 22.3 5.4 47 13-60 3-49 (113)
54 PF11381 DUF3185: Protein of u 36.8 50 0.0011 21.4 3.0 15 45-59 44-58 (59)
55 PF12666 PrgI: PrgI family pro 36.6 1.1E+02 0.0023 20.9 5.0 11 88-98 59-69 (93)
56 COG4298 Uncharacterized protei 35.6 1.2E+02 0.0027 21.3 5.0 22 9-30 17-38 (95)
57 PF06772 LtrA: Bacterial low t 35.5 2.8E+02 0.0061 23.6 11.0 59 9-67 252-310 (354)
58 PF03779 SPW: SPW repeat; Int 34.4 1.1E+02 0.0024 19.0 4.2 35 23-57 6-43 (51)
59 PF04854 DUF624: Protein of un 34.4 45 0.00097 21.9 2.6 19 9-27 2-23 (77)
60 PRK12658 putative monovalent c 34.1 1.2E+02 0.0025 22.7 5.0 48 12-60 2-49 (125)
61 PRK02935 hypothetical protein; 32.7 2E+02 0.0043 21.0 6.2 32 43-79 17-48 (110)
62 PF15125 TMEM238: TMEM238 prot 31.7 1.6E+02 0.0034 19.5 5.8 45 9-61 7-51 (65)
63 KOG3950 Gamma/delta sarcoglyca 31.2 79 0.0017 26.6 4.0 28 69-96 35-62 (292)
64 PF13903 Claudin_2: PMP-22/EMP 30.5 2.2E+02 0.0047 20.8 6.6 29 45-73 74-103 (172)
65 PRK08388 putative monovalent c 29.6 1.9E+02 0.0041 21.2 5.5 47 14-60 4-50 (119)
66 PF15345 TMEM51: Transmembrane 29.2 66 0.0014 26.6 3.2 26 43-68 62-87 (233)
67 PRK09094 putative monovalent c 29.2 1.9E+02 0.0041 21.2 5.4 47 13-60 3-49 (114)
68 PF09788 Tmemb_55A: Transmembr 27.1 1.8E+02 0.0039 24.4 5.5 50 6-57 199-248 (256)
69 PF13572 DUF4134: Domain of un 26.4 2.4E+02 0.0052 20.0 6.4 20 5-24 38-57 (98)
70 PF11023 DUF2614: Protein of u 25.7 2.8E+02 0.006 20.5 6.2 31 43-78 16-46 (114)
71 PRK12586 putative monovalent c 25.5 3.1E+02 0.0067 21.0 9.9 29 4-32 4-32 (145)
72 PF11947 DUF3464: Protein of u 25.3 2.6E+02 0.0056 21.6 5.7 44 13-59 70-113 (153)
73 PRK12661 putative monovalent c 25.1 2.2E+02 0.0047 21.6 5.2 49 13-62 4-52 (140)
74 PF00420 Oxidored_q2: NADH-ubi 24.3 2.3E+02 0.0051 19.1 8.8 74 17-96 4-78 (95)
75 COG2149 Predicted membrane pro 24.3 3E+02 0.0066 20.4 5.8 13 16-28 64-76 (120)
76 KOG3646 Acetylcholine receptor 24.1 1.4E+02 0.003 27.3 4.6 53 45-99 274-326 (486)
77 COG3374 Predicted membrane pro 24.0 1.8E+02 0.0039 23.4 4.7 17 43-59 45-61 (197)
78 PF08507 COPI_assoc: COPI asso 23.9 3E+02 0.0065 20.2 6.1 20 13-32 8-27 (136)
79 PF12805 FUSC-like: FUSC-like 23.1 4.3E+02 0.0093 21.8 7.7 13 50-62 32-44 (284)
80 PRK10209 acid-resistance membr 22.7 3.7E+02 0.0081 20.9 7.8 23 46-68 109-131 (190)
81 PF05640 NKAIN: Na,K-Atpase In 22.3 4E+02 0.0086 21.6 6.4 41 46-86 37-77 (200)
82 PF04790 Sarcoglycan_1: Sarcog 22.3 1.2E+02 0.0026 25.5 3.6 35 62-96 5-39 (264)
83 PF06749 DUF1218: Protein of u 22.1 1.6E+02 0.0034 20.6 3.7 27 6-32 38-64 (97)
84 PF05478 Prominin: Prominin; 22.0 73 0.0016 30.8 2.6 30 68-97 136-165 (806)
85 KOG4556 Predicted membrane pro 21.8 4.1E+02 0.009 21.3 6.3 42 44-85 32-73 (205)
86 PF12304 BCLP: Beta-casein lik 21.7 4E+02 0.0086 21.4 6.2 19 11-29 43-61 (188)
87 PF06166 DUF979: Protein of un 21.4 1.8E+02 0.0039 25.1 4.6 53 12-64 2-69 (308)
88 MTH00192 ND4L NADH dehydrogena 21.3 3E+02 0.0065 19.3 7.2 76 16-96 6-82 (99)
89 MTH00180 ND4L NADH dehydrogena 21.1 3E+02 0.0065 19.2 7.2 79 15-98 5-84 (99)
90 PF09125 COX2-transmemb: Cytoc 20.5 2E+02 0.0043 16.9 3.4 17 73-89 18-34 (38)
91 PRK09400 secE preprotein trans 20.4 98 0.0021 20.1 2.2 18 44-61 35-52 (61)
92 PRK10263 DNA translocase FtsK; 20.1 1E+03 0.022 25.0 10.9 27 4-31 72-98 (1355)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=99.94 E-value=2.7e-27 Score=192.74 Aligned_cols=152 Identities=18% Similarity=0.310 Sum_probs=112.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhh------hhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 047660 3 LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVK------LLQWPVIILGILILVVALARFIGGFWRIHWLLILYLV 76 (171)
Q Consensus 3 ~~~~~l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~------~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~ 76 (171)
+.||+++++|+++|++|++++++|+|+..++...... ...+.+|++|.+++++||+||+||+|||+|+|.+|++
T Consensus 8 ~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~~ 87 (237)
T KOG3882|consen 8 CLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYFI 87 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHHH
Confidence 7899999999999999999999999999875422111 1233479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeeccccccC---CcccccccccccccchhhhhcccccccccccccccCCCCCCCCccCCcC
Q 047660 77 AMLILIILLACLVVFIYMVMIKGSGYLA---PSRAYLEYRLDDFSGWLCRRVRSPYKWDRIKSYLSSTQMCPELNQSYRM 153 (171)
Q Consensus 77 ~l~vl~~~el~~~i~~~~~~~~~~~~~~---~~~~i~~y~~~~~~d~~Q~~~~~~~dW~~~~sC~~~~~~C~~~~~~~~~ 153 (171)
++++++++|+++++++++++++.+++.. ..+.++.|+.++. ..+.||.+| +.-.|++.+ +
T Consensus 88 ~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~---------~~~~~d~~Q----~~~~CCG~~----~ 150 (237)
T KOG3882|consen 88 LLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDPD---------LGEAWDKLQ----RELKCCGVN----G 150 (237)
T ss_pred HHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCcc---------HHHHHHHHH----HhccCCcCC----C
Confidence 9999999999999999999887765432 1122223322221 003477776 346666666 3
Q ss_pred hhhHHhcCCCCCCCCCCC
Q 047660 154 AQDFFNAHITPLQVIIIN 171 (171)
Q Consensus 154 ~~d~~~~~lspiqsgCc~ 171 (171)
+.||...+..++|.+||+
T Consensus 151 ~~~~~~~~~~~vP~SCC~ 168 (237)
T KOG3882|consen 151 YSDYFNCSSNNVPPSCCK 168 (237)
T ss_pred chHHhcCCCCCCCcccCC
Confidence 456655554338888885
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.57 E-value=3.2e-17 Score=127.96 Aligned_cols=132 Identities=23% Similarity=0.420 Sum_probs=18.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHh-hccccc-----hhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHH
Q 047660 3 LSNNVIRPINLVAILLSIPVIGAGIWLA-TEADNS-----CVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLV 76 (171)
Q Consensus 3 ~~~~~l~~~N~l~~l~Gi~ll~~Giw~~-~~~~~~-----~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~ 76 (171)
+.|++++++|++++++|++++++|+|+. .+...+ ........++.+|+++++++++|++|+.|||++++.+|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 5799999999999999999999999993 221111 1112233467799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhheeeeccccccCCc---cccccccccc----ccchhhhh-----cccccccccc
Q 047660 77 AMLILIILLACLVVFIYMVMIKGSGYLAPS---RAYLEYRLDD----FSGWLCRR-----VRSPYKWDRI 134 (171)
Q Consensus 77 ~l~vl~~~el~~~i~~~~~~~~~~~~~~~~---~~i~~y~~~~----~~d~~Q~~-----~~~~~dW~~~ 134 (171)
++++++++|++++++++.++++........ ...+.+..++ ..|.+|++ +++++||...
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iq~~~~CCG~~~~~d~~~~ 150 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNSNESFSEAWDNIQEKFECCGVNSPDDWFTS 150 (221)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHSSTT-CHHHHHHHHHHHHHT--SSTTCHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhccccccccccccccchhhhccccccchhhheecccccccccCCCCCcccccc
Confidence 999999999999999999887665432100 0111122111 12667777 4688888765
No 3
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=95.68 E-value=0.00052 Score=48.25 Aligned_cols=44 Identities=5% Similarity=-0.219 Sum_probs=27.4
Q ss_pred HHhhheeeecccccc--CCcccccccccc--cc---cchhhhhc-----ccccccc
Q 047660 89 VVFIYMVMIKGSGYL--APSRAYLEYRLD--DF---SGWLCRRV-----RSPYKWD 132 (171)
Q Consensus 89 ~i~~~~~~~~~~~~~--~~~~~i~~y~~~--~~---~d~~Q~~~-----~~~~dW~ 132 (171)
||++|++++++.... .+.+.+++|..+ +. .|.+|+++ +++.||.
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~~~~~~~~d~lQ~~l~CCG~~~~~d~~ 56 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVNGADDW 56 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCCCCchhhc
Confidence 478889998876543 234556666433 22 27788874 5666664
No 4
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=95.11 E-value=0.0016 Score=47.10 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=20.6
Q ss_pred heeeecccccc--CCcccccccccc----cc---cchhhhhc-----ccccccc
Q 047660 93 YMVMIKGSGYL--APSRAYLEYRLD----DF---SGWLCRRV-----RSPYKWD 132 (171)
Q Consensus 93 ~~~~~~~~~~~--~~~~~i~~y~~~----~~---~d~~Q~~~-----~~~~dW~ 132 (171)
|+++++++... .+.+.+++|..+ +. .|.+|+++ +++.||.
T Consensus 2 ~v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~ 55 (117)
T cd03160 2 YFQRDKLKQEMGDIVEKVIQNYGGNPENKTAEEAWDYVQFQLQCCGWTGPQDWT 55 (117)
T ss_pred ceeHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHhhCcccCCCCchhHH
Confidence 56676665432 223455565432 11 26666663 5666664
No 5
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=95.00 E-value=0.0018 Score=45.93 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=22.8
Q ss_pred heeeecccccc--CCcccccccccccc----cchhhhhc-----cccccccc
Q 047660 93 YMVMIKGSGYL--APSRAYLEYRLDDF----SGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 93 ~~~~~~~~~~~--~~~~~i~~y~~~~~----~d~~Q~~~-----~~~~dW~~ 133 (171)
|+++++++... .+.+.+++|+.++. .|.+|+++ ++++||..
T Consensus 2 ~v~~~~v~~~~~~~~~~~~~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~ 53 (105)
T cd03163 2 YVYRAKVEDELNPSIDKVFNKYNGTNAESRAVDYLQRQLQCCGIHNYTDWEN 53 (105)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCcccCCCCHHHHhh
Confidence 55666655432 22344555653222 37788874 67888853
No 6
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=94.93 E-value=0.0025 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=20.7
Q ss_pred eeeecccccc--CCccccccccccc----ccchhhhhc-----cccccccc
Q 047660 94 MVMIKGSGYL--APSRAYLEYRLDD----FSGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 94 ~~~~~~~~~~--~~~~~i~~y~~~~----~~d~~Q~~~-----~~~~dW~~ 133 (171)
++++++.... .+.+.+++|..++ ..|.+|+++ ++++||..
T Consensus 2 v~r~~i~~~l~~~l~~~i~~y~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~ 52 (104)
T cd03161 2 VFRHEIKGTFLRTYNEAVSNYNGDDERSDAVDTVQRTLHCCGVENYTDWLN 52 (104)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhcCcCcCCCChhhhhc
Confidence 4555544322 2234555564322 127777773 67788853
No 7
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=94.39 E-value=0.0029 Score=44.12 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=9.0
Q ss_pred chhhhhc-----cccccccc
Q 047660 119 GWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 119 d~~Q~~~-----~~~~dW~~ 133 (171)
|.+|+++ +++.||..
T Consensus 35 d~~Q~~l~CCG~~~~~Dw~~ 54 (98)
T cd03165 35 DITQTEFRCCGVTNYTDWYE 54 (98)
T ss_pred HHHHHhCcCcCCCChhHHHH
Confidence 5666663 56666643
No 8
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=94.13 E-value=0.0027 Score=43.41 Aligned_cols=14 Identities=7% Similarity=0.361 Sum_probs=7.6
Q ss_pred chhhhhc-----ccccccc
Q 047660 119 GWLCRRV-----RSPYKWD 132 (171)
Q Consensus 119 d~~Q~~~-----~~~~dW~ 132 (171)
|.+|+++ ++++||.
T Consensus 33 d~iQ~~l~CCG~~~~~Dw~ 51 (86)
T cd03164 33 DMIQSNLQCCGINGTTDWG 51 (86)
T ss_pred HHHHHHhcCCCCCChhhhC
Confidence 5566553 5556663
No 9
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=93.79 E-value=0.0047 Score=45.06 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=19.4
Q ss_pred eeeecccccc--CCccccccccccc----ccchhhhhc-----cccccccc
Q 047660 94 MVMIKGSGYL--APSRAYLEYRLDD----FSGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 94 ~~~~~~~~~~--~~~~~i~~y~~~~----~~d~~Q~~~-----~~~~dW~~ 133 (171)
+++++++... .+.+.+++|..++ ..|.+|+++ ++++||..
T Consensus 2 v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~D~iQ~~l~CCG~~~~~DW~~ 52 (121)
T cd03159 2 VFKDWIKDQLTEFLNNNIRAYRDDIDLQNLIDFLQEYWQCCGARGPDDWNL 52 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhccCCCCCChHHhcc
Confidence 4555544322 2234555554211 126666663 56666653
No 10
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=93.71 E-value=0.01 Score=45.40 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=20.1
Q ss_pred ccccccccccc------c---cchhhhhc-----ccccccccc
Q 047660 106 SRAYLEYRLDD------F---SGWLCRRV-----RSPYKWDRI 134 (171)
Q Consensus 106 ~~~i~~y~~~~------~---~d~~Q~~~-----~~~~dW~~~ 134 (171)
.+++++|+.++ . .|++|+++ ++++||..+
T Consensus 16 ~~~i~~Y~~~~~~~~~~~~~~~D~lQ~~fkCCG~~~y~DW~~~ 58 (143)
T cd03162 16 KNAMKFYKDTDTPGRCFLKKTIDMLQIEFQCCGNNGYRDWFEI 58 (143)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHhccCCCCCChhhhhhh
Confidence 45567775432 2 38899985 789999864
No 11
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=91.42 E-value=0.064 Score=37.95 Aligned_cols=42 Identities=7% Similarity=0.042 Sum_probs=19.6
Q ss_pred hheeeecccccc--CCcccccccccc--cc---cchhhhhc-----cccccccc
Q 047660 92 IYMVMIKGSGYL--APSRAYLEYRLD--DF---SGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~i~~y~~~--~~---~d~~Q~~~-----~~~~dW~~ 133 (171)
+++++++++... .+.+.+++|..+ +. .|.+|+++ +++.||..
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~iQ~~l~CCG~~~~~Dw~~ 55 (114)
T cd03156 2 ALFFKKDLEDSFKNLLKNNYGNYNSTGDAITSTWNRVMIELKCCGVNGPTDFVD 55 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcccCcCCCCcHHHHh
Confidence 455565554332 223445555421 11 25566653 56666643
No 12
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=91.05 E-value=0.08 Score=35.53 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=12.8
Q ss_pred CCCCCCCccCCcChhhHHhcCCCCCCCCCCC
Q 047660 141 TQMCPELNQSYRMAQDFFNAHITPLQVIIIN 171 (171)
Q Consensus 141 ~~~C~~~~~~~~~~~d~~~~~lspiqsgCc~ 171 (171)
.-.|+|.+ ++.||...+ .++|.+||+
T Consensus 38 ~l~CCG~~----~~~D~~~~~-~~vP~SCc~ 63 (90)
T cd03127 38 TFECCGVN----GPTDYLDLR-LLVPSSCCK 63 (90)
T ss_pred hCcCcCCC----ChHHHccCC-CCCCHhhcC
Confidence 34555554 444554322 356666663
No 13
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=89.79 E-value=0.14 Score=36.30 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=11.3
Q ss_pred chhhhhc-----cccccccc
Q 047660 119 GWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 119 d~~Q~~~-----~~~~dW~~ 133 (171)
|++|+++ +++.||..
T Consensus 36 d~iQ~~l~CCG~~~~~Dw~~ 55 (110)
T cd03155 36 DELQQEFKCCGSNNYTDWQD 55 (110)
T ss_pred HHHHHhCcCcCCCChhhhhh
Confidence 7788874 67888864
No 14
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=89.51 E-value=0.14 Score=37.34 Aligned_cols=8 Identities=13% Similarity=-0.101 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 047660 164 PLQVIIIN 171 (171)
Q Consensus 164 piqsgCc~ 171 (171)
+||.+||+
T Consensus 67 ~vP~SCC~ 74 (120)
T cd03167 67 SLPASCCI 74 (120)
T ss_pred CCCcCccC
Confidence 46777773
No 15
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.77 E-value=1.8 Score=33.78 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047660 10 PINLVAILLSIPVIGAGIWLA 30 (171)
Q Consensus 10 ~~N~l~~l~Gi~ll~~Giw~~ 30 (171)
+.+++..++|+++++.|+-.+
T Consensus 6 i~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777666666554
No 16
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=86.76 E-value=0.26 Score=34.22 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=10.4
Q ss_pred chhhhhc-----cccccccc
Q 047660 119 GWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 119 d~~Q~~~-----~~~~dW~~ 133 (171)
|.+|+++ ++++||..
T Consensus 33 d~iQ~~l~CCG~~~~~Dw~~ 52 (99)
T cd03166 33 DRMQKDLKCCGANNYTDWEN 52 (99)
T ss_pred HHHHHHhcccCCCChhhhhc
Confidence 6677763 67788854
No 17
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=85.27 E-value=2.3 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHH
Q 047660 10 PINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVAL 57 (171)
Q Consensus 10 ~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~ 57 (171)
++-++.+++|.+++.+|..+....-. ...--.++++++|+++++=|+
T Consensus 45 ~la~~Lli~G~~li~~g~l~~~~~i~-~~~~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 45 ALAVFLLIFGTVLIIIGLLLFFGHID-GDRDRGWALLILGILCFIPGF 91 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-CCCcccchHHHHHHHHHhccH
Confidence 44466778899999999887765311 111223578889998887554
No 18
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=84.95 E-value=0.32 Score=35.12 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=20.5
Q ss_pred eeeecccccc--CCccccccccc-ccc---cchhhhhc-----cccccccc
Q 047660 94 MVMIKGSGYL--APSRAYLEYRL-DDF---SGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 94 ~~~~~~~~~~--~~~~~i~~y~~-~~~---~d~~Q~~~-----~~~~dW~~ 133 (171)
+++++++... .+.+.+++|.. .++ .|.+|+++ +++.||..
T Consensus 2 v~r~~v~~~i~~~l~~~i~~y~~~~~~~~~~d~lQ~~l~CCG~~~~~Dw~~ 52 (119)
T cd03158 2 IFSNQTIDLLEENIRKAIVHYYDDLDLQNIIDFVQKEFKCCGGDDYRDWSK 52 (119)
T ss_pred CcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHccCCCCCChhhccc
Confidence 4455544332 22345555542 111 37777773 67788864
No 19
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=83.12 E-value=19 Score=28.91 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhh-hhHHHHHHHHHHHHHHHHhhh
Q 047660 8 IRPINLVAILLSIPVIGAGIWLATEADNSCVKL-LQWPVIILGILILVVALARFI 61 (171)
Q Consensus 8 l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~-~~~~~i~~G~~i~~is~lGc~ 61 (171)
+-++-.++.++|..+..+|..-+.+-+....+. .....-.+|+.++++|.++..
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 344556777888888877777666533222222 111233456555556655543
No 20
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=77.49 E-value=5.7 Score=35.51 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhhhhchhhHHHHHHHH
Q 047660 50 ILILVVALARFIGGFWRIHWLLILYLVA 77 (171)
Q Consensus 50 ~~i~~is~lGc~Ga~~e~~~lL~~y~~~ 77 (171)
++.+++.+++++|..|+|||.+.++.++
T Consensus 217 ~~~lviC~~~l~gl~r~Sr~~li~~s~~ 244 (418)
T cd07912 217 SLLLVICLVLLVGLARHSRCLLIVFSVC 244 (418)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3566889999999999999999999665
No 21
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=77.41 E-value=5.1 Score=36.45 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=32.8
Q ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 047660 42 QWP-VIILGILILVVALARFIGGFWRIHWLLILYLVAMLILII 83 (171)
Q Consensus 42 ~~~-~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~ 83 (171)
.|| .++.=.+.+++.+.++.|-.|+|||++..|.++=++.++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lv 251 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALV 251 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 345 355566788999999999999999999999887444443
No 22
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=75.04 E-value=1.4 Score=31.47 Aligned_cols=27 Identities=7% Similarity=-0.010 Sum_probs=18.2
Q ss_pred cccccccccc------ccchhhhhc-----cccccccc
Q 047660 107 RAYLEYRLDD------FSGWLCRRV-----RSPYKWDR 133 (171)
Q Consensus 107 ~~i~~y~~~~------~~d~~Q~~~-----~~~~dW~~ 133 (171)
+.+++|..++ ..|++|+++ ++++||..
T Consensus 18 ~~~~~Y~~~~~~~~~~~~D~iQ~~l~CCG~~~~~DW~~ 55 (103)
T cd03157 18 SRMSNFGLQRYQWLTHAWNSFQTEFKCCGVIYFTDWLE 55 (103)
T ss_pred HHHHHHCCCCchhHHHHHHHHHHhccCccCCChhHHhc
Confidence 4566665422 238899984 78999965
No 23
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=73.24 E-value=8.7 Score=25.83 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 047660 11 INLVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 11 ~N~l~~l~Gi~ll~~Giw~~~~ 32 (171)
-|.+++.+|++++.+|-++..-
T Consensus 6 ~Nyill~iG~~vIilGfilMsg 27 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSG 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeC
Confidence 5889999999999999887754
No 24
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=71.80 E-value=1.3 Score=32.78 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILII 83 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~ 83 (171)
+-.++|+..+.+|+.+....... ......|+ -.|++.++.|.+|.....|.++|++..++.+-.+-++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~-~~~~~~pi-W~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~ 72 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSV-LVYIGYPI-WGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSAL 72 (150)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH-HHHhcccH-HHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHH
Confidence 34577888888888776432220 01112233 3488888999999999999999999988877555444
No 25
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=70.62 E-value=37 Score=24.39 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047660 6 NVIRPINLVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 6 ~~l~~~N~l~~l~Gi~ll~~Giw~~~~ 32 (171)
.+..+.+.+++++.++++++++|.+++
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~ 29 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVD 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999876
No 26
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=68.81 E-value=18 Score=28.20 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhh-------------HHHHHHHHHHHHHH
Q 047660 45 VIILGILILVVALARFIGGFWRIHW-------------LLILYLVAMLILII 83 (171)
Q Consensus 45 ~i~~G~~i~~is~lGc~Ga~~e~~~-------------lL~~y~~~l~vl~~ 83 (171)
+++.++++++++++-.....|..+. -...|.++++-+++
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLI 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 5667777888888888888777665 45566666555444
No 27
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=67.25 E-value=29 Score=27.99 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc----chh---hh--hhHHHHHHHHHHHHHHHHhhhhhhhc
Q 047660 13 LVAILLSIPVIGAGIWLATEADN----SCV---KL--LQWPVIILGILILVVALARFIGGFWR 66 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~~~~----~~~---~~--~~~~~i~~G~~i~~is~lGc~Ga~~e 66 (171)
+.+.++|++..++|+.-.+++.- +.+ +. .+.++.+-|..+++.++.|......|
T Consensus 3 ~~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~ 65 (196)
T PF06770_consen 3 IILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITSK 65 (196)
T ss_pred chhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455888888888776655321 111 11 23346788998888888887666643
No 28
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=66.46 E-value=15 Score=34.78 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 047660 9 RPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILII 83 (171)
Q Consensus 9 ~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~ 83 (171)
.+.-+++.++|+.+++-|+|+..-+.+ +..++.|+.+++.+++ -+|+++-.|.+|..+++.-.+
T Consensus 4 ~~~~~~~~~~gl~l~~gg~~l~~lggs-------~yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t~~ 67 (773)
T COG4993 4 TLTALVIALCGLALLIGGIWLVALGGS-------WYYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGTLV 67 (773)
T ss_pred hHHHHHHHHHHHHHhccceeEEeeCCc-------hHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHhH
Confidence 344567788999999999887743321 2345667777777766 478899999999887665443
No 29
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=66.27 E-value=25 Score=22.58 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhh
Q 047660 15 AILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGF 64 (171)
Q Consensus 15 ~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~ 64 (171)
-.+.|++++..|+....... .+...++|+..+.-++.|.|...
T Consensus 13 R~~~G~~l~~~~~~~~~~~~-------~~~~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 13 RIIIGIVLLALGLLGLFGSW-------GWLLGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHCcCHhH
Confidence 34566666666644332210 34466788888888888888764
No 30
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=63.27 E-value=57 Score=23.92 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=26.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHhhheeeec
Q 047660 63 GFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIK 98 (171)
Q Consensus 63 a~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~~~~~ 98 (171)
..-+...++..|+.++.+++.+.+..+++.+..+.+
T Consensus 50 ~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~~~ 85 (237)
T PF02932_consen 50 PTSYAKPLDGWYFICTMFVFSASLEFAVVVYNIHHR 85 (237)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhccccchhhhHHHHhhhhhhhhccc
Confidence 345667889999888888888777777777766443
No 31
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=60.00 E-value=32 Score=26.89 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHh
Q 047660 11 INLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALAR 59 (171)
Q Consensus 11 ~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lG 59 (171)
.|++..+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~rn-Lir~iiGl~il~~~vnLlii~~G~ 50 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLERS-LTRMLLGLLLIGNGVNLLILTAGG 50 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777778888999999887542 111223333566677777766655
No 32
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=59.59 E-value=48 Score=21.86 Aligned_cols=47 Identities=15% Similarity=0.344 Sum_probs=33.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHH
Q 047660 3 LSNNVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALA 58 (171)
Q Consensus 3 ~~~~~l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~l 58 (171)
.-|.+.-.+-++.+++|.+.+.++.+.... ....+++|+.++++|++
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i~it~F~~n~---------~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFINITAFLINQ---------IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 346677778888899999999998877622 23456677776666654
No 33
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=59.43 E-value=64 Score=23.43 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIG 62 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~G 62 (171)
.+.+++.+++++|+|....+.+-.......-++.-|+.++++++-..-|
T Consensus 4 ~~~~~~~~Lf~iGlygil~rrnli~~liglei~~~av~L~lv~~g~~~~ 52 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKKNLLKIIIGLDIMETGVNLLLISIGYVSG 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567778889999997653212211223333667788888888765554
No 34
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=59.19 E-value=71 Score=25.45 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIH 68 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~ 68 (171)
.+.+.|++++..|++....+..+ .......+|.++++.|.+=..+|..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~s----~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAIS----TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34678899999999888654211 1123456777777777777777776666
No 35
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=56.70 E-value=65 Score=22.48 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 047660 16 ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYM 94 (171)
Q Consensus 16 ~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~ 94 (171)
.+++..++.+|+|....+..-.......-++..|+.+++++.....+. ..=..+.....++-.+|.+.+....+
T Consensus 8 ~~~~~~lf~iGl~~~~~~~~li~~Ll~lE~m~~~v~l~~~~~~~~~~~-----~~~~~l~l~~ivi~~~E~algLsllv 81 (100)
T PRK05715 8 LILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGD-----LDGQVFAFFVITVAAAEAAIGLAILL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888876432111111122235666766666665544321 11122333344445568777654443
No 36
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=54.60 E-value=6 Score=29.37 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHH
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVAL 57 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~ 57 (171)
+++.+|+++++.|..++...-.+-...-..+++++|+++|+=||
T Consensus 56 vL~~fg~Lli~lg~fl~~~~~~ag~~~~gv~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 56 VLLVFGLLLIGLGFFLAGGRVEAGDRSQGVFFFVLGILLFIPGF 99 (124)
T ss_pred HHHHHHHHHHHHHHHheecceeeCCCcceEEEehhhhHhcccch
Confidence 44455566666665554321110111122346677777765443
No 37
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=54.59 E-value=52 Score=20.67 Aligned_cols=47 Identities=32% Similarity=0.419 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 047660 18 LSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIH 68 (171)
Q Consensus 18 ~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~ 68 (171)
.|+..+..|+++...+.. ........+|..+++.|......+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~~----~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA----SLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578888899888866421 22233567888888888888888888544
No 38
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=54.22 E-value=74 Score=22.39 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 047660 17 LLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYM 94 (171)
Q Consensus 17 l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~ 94 (171)
+++..+..+|++....+.+-.......-++..|+.++++++....+..-... ..+.....++-.+|.+.+....+
T Consensus 8 ~~~~~lf~iGl~g~l~~rnll~~LlslE~m~~~v~l~~~~~~~~~~~~~~~~---~~l~l~~ivia~~E~algLsllv 82 (101)
T CHL00015 8 ILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKG---DIFSIFVIAIAAAEAAIGLAIVS 82 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788887653211111122233567777777777766544321011 22333333445568777654443
No 39
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=54.11 E-value=68 Score=28.18 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHhhhhhhhchhh------HHHHHHHHHHHHHHHHHHHHHhhheeee
Q 047660 57 LARFIGGFWRIHW------LLILYLVAMLILIILLACLVVFIYMVMI 97 (171)
Q Consensus 57 ~lGc~Ga~~e~~~------lL~~y~~~l~vl~~~el~~~i~~~~~~~ 97 (171)
++++++-.++++. -++...+++.+.++.. .|..-.+.+|
T Consensus 198 ~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfn--sG~i~~i~~d 242 (367)
T PF09971_consen 198 LFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFN--SGFIYEIFGD 242 (367)
T ss_pred HHHHHHHhhhcccccccchHHHHHHHHHHHHHHHh--hhHHHHHhcC
Confidence 3444455555444 4455556666555555 3444444444
No 40
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=53.36 E-value=28 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 047660 39 KLLQWPVIILGILILVVALAR 59 (171)
Q Consensus 39 ~~~~~~~i~~G~~i~~is~lG 59 (171)
.....|.+.+|+.+.+.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 445568999999888777654
No 41
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=49.84 E-value=5.5 Score=35.37 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhhhhchhhHHHHHHHH
Q 047660 50 ILILVVALARFIGGFWRIHWLLILYLVA 77 (171)
Q Consensus 50 ~~i~~is~lGc~Ga~~e~~~lL~~y~~~ 77 (171)
++.+++.++++.|..|+|||++..+.++
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~ 221 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVL 221 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeec
Confidence 4566888999999999999999877665
No 42
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=48.95 E-value=5 Score=26.97 Aligned_cols=39 Identities=10% Similarity=-0.086 Sum_probs=20.8
Q ss_pred eeeecccccc--CCcccccccccc-c-----ccchhhhhc-----ccccccc
Q 047660 94 MVMIKGSGYL--APSRAYLEYRLD-D-----FSGWLCRRV-----RSPYKWD 132 (171)
Q Consensus 94 ~~~~~~~~~~--~~~~~i~~y~~~-~-----~~d~~Q~~~-----~~~~dW~ 132 (171)
++++++.... ...+.+++|+.+ + ..|.+|+.+ +++.||.
T Consensus 2 v~r~~v~~~i~~~~~~~~~~y~~~~~~~~~~~~d~iQ~~l~CCG~~~~~D~~ 53 (84)
T cd03152 2 SNKDKVVKEVQTFYRQTYAKYKQSRDPPLKETLKAIHFALDCCGPTGGLEQF 53 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCCCCCcccc
Confidence 4555554322 223445555442 2 137788874 6788883
No 43
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=48.67 E-value=1.4e+02 Score=23.84 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 047660 8 IRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLAC 87 (171)
Q Consensus 8 l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~ 87 (171)
++.++++++++.++=++.++...++....... ..+-.+-+. -++.+++|-.|--|.|.-++..|.+..++.=++=+.
T Consensus 40 l~~~h~ll~l~~~a~v~~~~L~~i~~~~~p~p-~~Wey~~~l--S~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~ 116 (186)
T PF07086_consen 40 LILFHALLWLLMAAKVSVDILLEISELQIPSP-YQWEYIWCL--SLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLI 116 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCh-hHHHHHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888777777776655543211111 112222111 334566777777888888888887766665444444
Q ss_pred HHHhh
Q 047660 88 LVVFI 92 (171)
Q Consensus 88 ~~i~~ 92 (171)
.+...
T Consensus 117 ~g~~~ 121 (186)
T PF07086_consen 117 YGAMY 121 (186)
T ss_pred HHHHH
Confidence 44433
No 44
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=48.05 E-value=26 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047660 5 NNVIRPINLVAILLSIPVIGAGIWLA 30 (171)
Q Consensus 5 ~~~l~~~N~l~~l~Gi~ll~~Giw~~ 30 (171)
||.+.++.++..++|+++|+-+|-+.
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~AN 61 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQAN 61 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 78888888999999999999887654
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.32 E-value=1.1e+02 Score=23.47 Aligned_cols=15 Identities=47% Similarity=0.848 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 047660 45 VIILGILILVVALAR 59 (171)
Q Consensus 45 ~i~~G~~i~~is~lG 59 (171)
.+++|+++++.|..+
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555554444444
No 46
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=46.62 E-value=70 Score=23.29 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 047660 12 NLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIG 62 (171)
Q Consensus 12 N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~G 62 (171)
|++..+.+.+++++|+|...+++ -.......-++.-|+.++++++-+.-|
T Consensus 2 ~~~~~~~~~~Lf~iGiy~il~rn-li~~ligl~im~~avnL~~v~~g~~~~ 51 (114)
T PRK12660 2 NLILLLVIGFLVFIGTYMILSIN-LIRIVIGISIYTHAGNLIIMSMGGYGS 51 (114)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677788889999999875431 111122223566677777777766654
No 47
>TIGR00941 2a6301s03 Multicomponent Na+:H+ antiporter, MnhC subunit.
Probab=44.95 E-value=84 Score=22.67 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHh
Q 047660 12 NLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALAR 59 (171)
Q Consensus 12 N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lG 59 (171)
|+++.+...+++++|+|+..+++ -........++.-|+.+++++.-+
T Consensus 2 ~~~~~~~~~~L~~~G~Y~il~~n-lir~iigl~i~~~~vnL~~v~~g~ 48 (104)
T TIGR00941 2 ESIFALIIGILTASGVYLLLSRS-VVRVVLGLALLGYAVNLFILTMGG 48 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777888999999887542 111223333566677776666654
No 48
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=44.57 E-value=48 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 047660 39 KLLQWPVIILGILILVVALARFIGGFWRIH 68 (171)
Q Consensus 39 ~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~ 68 (171)
..+.+.++++|.++++.++++.+-.-|-.+
T Consensus 223 ~wLwwi~~vlG~ll~lr~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 223 YWLWWIFLVLGLLLFLRGFINYIKVRRMEE 252 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhhHHH
Confidence 446667899999999999999876655444
No 49
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=42.90 E-value=29 Score=22.86 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047660 13 LVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~ 32 (171)
.+.+++|+.++++|+|...+
T Consensus 48 ~ll~~vg~gli~~gi~~~~~ 67 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVK 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999998865
No 50
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=39.57 E-value=1.5e+02 Score=21.66 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhh
Q 047660 12 NLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60 (171)
Q Consensus 12 N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc 60 (171)
|++..+...+++++|+|...+++ -........++.-|+.++++++-+.
T Consensus 2 ~~~~~~~~~~Lf~iG~y~il~rn-li~~ligl~im~~avnL~~v~~g~~ 49 (117)
T PRK12659 2 EFLLAIVVGGLYAAGIYMMLRRS-IVKLVIGLILLGNAANLLIFTVGRL 49 (117)
T ss_pred chHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45666777888999999886442 1112222335566776767666643
No 51
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=39.55 E-value=38 Score=19.52 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhc
Q 047660 43 WPVIILGILILVVALARFIGGFWR 66 (171)
Q Consensus 43 ~~~i~~G~~i~~is~lGc~Ga~~e 66 (171)
+.-+++|.+++++++.|..-..++
T Consensus 10 W~Gl~~g~~l~~~~~tG~~~~f~~ 33 (37)
T PF13706_consen 10 WLGLILGLLLFVIFLTGAVMVFRD 33 (37)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345778999999999998776654
No 52
>PRK10209 acid-resistance membrane protein; Provisional
Probab=38.97 E-value=1.9e+02 Score=22.65 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFW 65 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~ 65 (171)
.+.+.|++.+..|+.+...+..+ .....+.+|..+++-|.....++.+
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~----~~~~~~~~g~~ll~~Gi~~l~~~~~ 70 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVS----GDALSTVVGILLICSGIALIVGLFA 70 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988765211 1112355777777777777776554
No 53
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=37.71 E-value=1.1e+02 Score=22.30 Aligned_cols=47 Identities=9% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhh
Q 047660 13 LVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc 60 (171)
.+..+...+++++|+|+..+++ -........++.-|+.+++++.-+-
T Consensus 3 ~~~~~~~~~L~~~G~ylll~rn-lik~iigl~i~~~~v~L~~v~~g~~ 49 (113)
T PRK08600 3 ILMIIVIGILTAIAVYLILSKS-LLRIIIGTTLLSHGANLLLLTMGGL 49 (113)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666677889999887542 1112223335666776666665543
No 54
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=36.78 E-value=50 Score=21.43 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHh
Q 047660 45 VIILGILILVVALAR 59 (171)
Q Consensus 45 ~i~~G~~i~~is~lG 59 (171)
.++.|++..++|+.+
T Consensus 44 ~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 44 YLIGGAVAVIVGLFL 58 (59)
T ss_pred HHHhHHHHHHHHHhh
Confidence 577788888888764
No 55
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=36.56 E-value=1.1e+02 Score=20.87 Aligned_cols=11 Identities=0% Similarity=-0.046 Sum_probs=5.8
Q ss_pred HHHhhheeeec
Q 047660 88 LVVFIYMVMIK 98 (171)
Q Consensus 88 ~~i~~~~~~~~ 98 (171)
...+++.-+|.
T Consensus 59 ~~~~g~~k~~g 69 (93)
T PF12666_consen 59 FAFLGFFKKDG 69 (93)
T ss_pred HHHhHhhhhcC
Confidence 44556655543
No 56
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.64 E-value=1.2e+02 Score=21.26 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047660 9 RPINLVAILLSIPVIGAGIWLA 30 (171)
Q Consensus 9 ~~~N~l~~l~Gi~ll~~Giw~~ 30 (171)
..||-..+-++..++++|+|.+
T Consensus 17 i~f~waafg~s~~m~~~gi~~l 38 (95)
T COG4298 17 IMFNWAAFGASYFMLGLGIWLL 38 (95)
T ss_pred HhHHHHHHHHHHHHHHHHhhee
Confidence 4567777888888999999976
No 57
>PF06772 LtrA: Bacterial low temperature requirement A protein (LtrA); InterPro: IPR010640 This entry consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes []. It also contains a number of uncharacterised fungal proteins.
Probab=35.49 E-value=2.8e+02 Score=23.61 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhch
Q 047660 9 RPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRI 67 (171)
Q Consensus 9 ~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~ 67 (171)
+..--++...|+.++++|+=..++.+.+.........+..|..++++|....--..++.
T Consensus 252 ~~y~Hl~l~~givl~~~gl~~~v~~~~~~~~~~~~~~~~~g~alfll~~~~~~~~~~~~ 310 (354)
T PF06772_consen 252 WIYLHLPLVAGIVLIAVGLELVVEHPVAHSSPRWALALLGGVALFLLGLWLFRRRNKRR 310 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445778899999999987776654332222222344778888888877765555543
No 58
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=34.42 E-value=1.1e+02 Score=19.03 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=19.7
Q ss_pred HHHHHHHhhccc---cchhhhhhHHHHHHHHHHHHHHH
Q 047660 23 IGAGIWLATEAD---NSCVKLLQWPVIILGILILVVAL 57 (171)
Q Consensus 23 l~~Giw~~~~~~---~~~~~~~~~~~i~~G~~i~~is~ 57 (171)
+.+|+|+...+- ...+.-..+.-+++|+++.++|+
T Consensus 6 ~llGlwli~SPWvlgf~~~~~~~~~~vi~G~~v~~la~ 43 (51)
T PF03779_consen 6 LLLGLWLIVSPWVLGFSATAAAAWNNVIVGILVALLAL 43 (51)
T ss_pred HHHHHHHHHhHHHcccCCchhHHHHHHHHHHHHHHHHH
Confidence 556777766531 11112233345778998888873
No 59
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=34.40 E-value=45 Score=21.90 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.4
Q ss_pred HHHHHHHH---HHHHHHHHHHH
Q 047660 9 RPINLVAI---LLSIPVIGAGI 27 (171)
Q Consensus 9 ~~~N~l~~---l~Gi~ll~~Gi 27 (171)
...|++++ +.|++++++|-
T Consensus 2 ~~ln~lwl~~~l~~l~v~tigP 23 (77)
T PF04854_consen 2 VVLNLLWLLFTLAGLPVFTIGP 23 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888 89999888874
No 60
>PRK12658 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=34.07 E-value=1.2e+02 Score=22.70 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhh
Q 047660 12 NLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60 (171)
Q Consensus 12 N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc 60 (171)
+++..+...+++++|+|+..+++ -........++.-|+.+++++.-+-
T Consensus 2 ~~~~~~~~g~L~~~G~Ylil~rn-lir~iigl~il~~avnLlii~~g~~ 49 (125)
T PRK12658 2 EALFAILVGVFFAAAIYLMLSRH-IIRILFGLALLGNAVNLLIFTAGRL 49 (125)
T ss_pred chHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34566777788999999887542 1112222335566766666665543
No 61
>PRK02935 hypothetical protein; Provisional
Probab=32.74 E-value=2e+02 Score=21.02 Aligned_cols=32 Identities=6% Similarity=0.430 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHH
Q 047660 43 WPVIILGILILVVALARFIGGFWRIHWLLILYLVAML 79 (171)
Q Consensus 43 ~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~ 79 (171)
..++.+|.+++-+|++ .|+++.+..+|.++=+
T Consensus 17 L~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~~G~ 48 (110)
T PRK02935 17 LSLVFIGFIVMYLGIF-----FRESIIIMTIFMLLGF 48 (110)
T ss_pred HHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHH
Confidence 3467888888888865 4888887777766433
No 62
>PF15125 TMEM238: TMEM238 protein family
Probab=31.69 E-value=1.6e+02 Score=19.55 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhh
Q 047660 9 RPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFI 61 (171)
Q Consensus 9 ~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~ 61 (171)
+.+-++|=+.|++++-.|+.+-.. ...-++=.|.++.+.|+++.+
T Consensus 7 f~laV~fD~vGl~~Ll~GiFa~l~--------f~D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 7 FWLAVVFDVVGLVMLLTGIFAPLD--------FYDFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hHHHHHHHHhhHHHHHHHHhcchh--------HHHHHHHHhHHHHHHHHHHHH
Confidence 344556667777777777665431 122344567777777777653
No 63
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=31.21 E-value=79 Score=26.59 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhheee
Q 047660 69 WLLILYLVAMLILIILLACLVVFIYMVM 96 (171)
Q Consensus 69 ~lL~~y~~~l~vl~~~el~~~i~~~~~~ 96 (171)
-+|.+|..+|.+++++-++.+++.+-+-
T Consensus 35 rcLY~fvLlL~i~ivvNLalTiWIlkVm 62 (292)
T KOG3950|consen 35 RCLYTFVLLLMILIVVNLALTIWILKVM 62 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888899999999888554
No 64
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=30.51 E-value=2.2e+02 Score=20.80 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHH-HhhhhhhhchhhHHHH
Q 047660 45 VIILGILILVVAL-ARFIGGFWRIHWLLIL 73 (171)
Q Consensus 45 ~i~~G~~i~~is~-lGc~Ga~~e~~~lL~~ 73 (171)
+..+|.++.++++ ++.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 3455666555554 4778888888865554
No 65
>PRK08388 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.57 E-value=1.9e+02 Score=21.18 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhh
Q 047660 14 VAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60 (171)
Q Consensus 14 l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc 60 (171)
+..+.+.+++++|+|....+.+-.......-++.-|+.++++++-..
T Consensus 4 ~~~~~~~~Lf~iGlygil~~rnlir~ligl~im~~av~L~lv~~g~~ 50 (119)
T PRK08388 4 FQFITAFLMIALGIYAFLYKRNLIKLILALDLIDSGIHLLLISLGYR 50 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566788899999976532122112223335666777777766433
No 66
>PF15345 TMEM51: Transmembrane protein 51
Probab=29.21 E-value=66 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchh
Q 047660 43 WPVIILGILILVVALARFIGGFWRIH 68 (171)
Q Consensus 43 ~~~i~~G~~i~~is~lGc~Ga~~e~~ 68 (171)
..++++|++++++|++=.+=--|+.+
T Consensus 62 yVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 62 YVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34788899888888765554444444
No 67
>PRK09094 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=29.19 E-value=1.9e+02 Score=21.20 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhh
Q 047660 13 LVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARF 60 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc 60 (171)
++..+...+++++|+|+..+++ -........++.-|+.+++++.-+.
T Consensus 3 ~~~~~~~~~L~~~G~Y~il~rn-lir~iigl~il~~avnL~lv~~g~~ 49 (114)
T PRK09094 3 LVLALAIGVLTASGVWLLLRPR-TFQVILGLSLLSYAVNLFIFAMGRL 49 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445556677899999887543 1222233335666777776666543
No 68
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.14 E-value=1.8e+02 Score=24.42 Aligned_cols=50 Identities=10% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHH
Q 047660 6 NVIRPINLVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVAL 57 (171)
Q Consensus 6 ~~l~~~N~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~ 57 (171)
.+++++-++|.++|++ +.+|.|-..+. ....-+....+++++++++.=|+
T Consensus 199 i~f~llgllfliiaig-ltvGT~~~A~~-~~giY~~wv~~~l~a~~~~~rs~ 248 (256)
T PF09788_consen 199 IIFFLLGLLFLIIAIG-LTVGTWTYAKT-YGGIYVSWVGLFLIALICLIRSI 248 (256)
T ss_pred HHHHHHHHHHHHHHHH-HhhhhHHHHhh-cCcEeHHHHHHHHHHHHHHHHhh
No 69
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=26.44 E-value=2.4e+02 Score=20.04 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 047660 5 NNVIRPINLVAILLSIPVIG 24 (171)
Q Consensus 5 ~~~l~~~N~l~~l~Gi~ll~ 24 (171)
+|.....+++..+.|++-+.
T Consensus 38 sy~~~~~~l~yaI~aVvglI 57 (98)
T PF13572_consen 38 SYFDPVTKLMYAIGAVVGLI 57 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455554444444333
No 70
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=25.71 E-value=2.8e+02 Score=20.45 Aligned_cols=31 Identities=10% Similarity=0.483 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHH
Q 047660 43 WPVIILGILILVVALARFIGGFWRIHWLLILYLVAM 78 (171)
Q Consensus 43 ~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l 78 (171)
..++.+|.+++.+|++ .|+++.+..+|.++=
T Consensus 16 l~lif~g~~vmy~gi~-----f~~~~~im~ifmllG 46 (114)
T PF11023_consen 16 LSLIFIGMIVMYIGIF-----FKASPIIMVIFMLLG 46 (114)
T ss_pred HHHHHHHHHHHhhhhh-----hcccHHHHHHHHHHH
Confidence 3467788888887754 466666666655443
No 71
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.54 E-value=3.1e+02 Score=20.98 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047660 4 SNNVIRPINLVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 4 ~~~~l~~~N~l~~l~Gi~ll~~Giw~~~~ 32 (171)
.+-++-++-.++.++|..+..+|..-+.+
T Consensus 4 ~~~~~~il~~ill~lG~~f~ligaIGllR 32 (145)
T PRK12586 4 TKEIFSLIAAIMILLGSIIALISAIGIVK 32 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566677788888777777666655
No 72
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.34 E-value=2.6e+02 Score=21.62 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHh
Q 047660 13 LVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALAR 59 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lG 59 (171)
-+-..+|++++.+.-|+...... .+..+..+++-.+.|.+|++|
T Consensus 70 GiP~~lG~~~f~~~y~l~~~~~~---dvP~~~~~~~S~~~Fg~gllG 113 (153)
T PF11947_consen 70 GIPTALGVAVFVVFYYLKSRQIV---DVPPWAVLLVSLVFFGLGLLG 113 (153)
T ss_pred chHHHHHHHHHHHHHHHHhcccc---ccCchHHHHHHHHHHHHHHHh
Confidence 34445555555555444433211 122222333444455555555
No 73
>PRK12661 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=25.13 E-value=2.2e+02 Score=21.64 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhh
Q 047660 13 LVAILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIG 62 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~G 62 (171)
++..+...+++++|+|+..+++ -.......-++.-|+-++++++-..-|
T Consensus 4 ~~~~~~~~iLf~iGiylllrrN-lik~liglelm~~avnL~lv~~g~~~g 52 (140)
T PRK12661 4 FFLSLTIALLFGIGTFLILRRD-MIKVIIGLSIISHAVNLLIVSSGVFEG 52 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4455566677889999765432 111122223555666677777665543
No 74
>PF00420 Oxidored_q2: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; InterPro: IPR001133 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents NADH:ubiquinone oxidoreductase, chain 4L, as well as NADH-quinone oxidoreductase (1.6.99.5 from EC). In eukaryotes, these enzymes are usually found in either mitochondria or chloroplasts as part of the respiratory-chain NADH dehydrogenase (also known as complex I or NADH-ubiquinone oxidoreductase), an oligomeric enzymatic complex []. However, they are also found in bacteria [] and archaea [] where they are annotated as NuoK subunit.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_G.
Probab=24.32 E-value=2.3e+02 Score=19.12 Aligned_cols=74 Identities=12% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhccccchhh-hhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhee
Q 047660 17 LLSIPVIGAGIWLATEADNSCVK-LLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMV 95 (171)
Q Consensus 17 l~Gi~ll~~Giw~~~~~~~~~~~-~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~~ 95 (171)
+.+..++..|++....+ .+.-. ....-++..|+.+..+...... +...-..+.....++-++|.+.+....+.
T Consensus 4 ~~~~~lf~~gl~~~~~~-~~ll~~Li~lE~m~~~v~l~~~~~~~~~-----~~~~~~~~~l~~l~~~v~e~algLsllv~ 77 (95)
T PF00420_consen 4 FVAFFLFFIGLYGILTR-RHLLRILISLELMMLGVFLLLVFMGYFS-----NDPIPQALILTFLVISVCESALGLSLLVS 77 (95)
T ss_dssp HHHHHHHHHHHHHHHH---BHHHHHHHHHHHHHHHHHHHHHHHHHT-----T-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677787766532 22111 2222356667766666555433 22222233333334445687776655543
Q ss_pred e
Q 047660 96 M 96 (171)
Q Consensus 96 ~ 96 (171)
.
T Consensus 78 ~ 78 (95)
T PF00420_consen 78 L 78 (95)
T ss_dssp T
T ss_pred H
Confidence 3
No 75
>COG2149 Predicted membrane protein [Function unknown]
Probab=24.27 E-value=3e+02 Score=20.42 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 047660 16 ILLSIPVIGAGIW 28 (171)
Q Consensus 16 ~l~Gi~ll~~Giw 28 (171)
.+.|+++++.|+|
T Consensus 64 i~~gil~~a~g~~ 76 (120)
T COG2149 64 ILVGILLAALGAL 76 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 76
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=1.4e+02 Score=27.31 Aligned_cols=53 Identities=8% Similarity=0.124 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhheeeecc
Q 047660 45 VIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMVMIKG 99 (171)
Q Consensus 45 ~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~~~~~~ 99 (171)
++.+-.++..+| =...+-.|+..+++.|+-...++..+-++++++++-++++.
T Consensus 274 lLsvc~FL~mvs--e~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~ 326 (486)
T KOG3646|consen 274 LLSVCFFLTMVS--EMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT 326 (486)
T ss_pred HHHHHHHHHHHH--hhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence 334444444443 45788999999999999998888888888888887777653
No 77
>COG3374 Predicted membrane protein [Function unknown]
Probab=24.03 E-value=1.8e+02 Score=23.45 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047660 43 WPVIILGILILVVALAR 59 (171)
Q Consensus 43 ~~~i~~G~~i~~is~lG 59 (171)
.|++++|.++++.|+-|
T Consensus 45 ~p~~~lG~~~~itGl~g 61 (197)
T COG3374 45 APAAGLGIFILITGLWG 61 (197)
T ss_pred chHHHHHHHHHHHHHHh
Confidence 34555555555554444
No 78
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.93 E-value=3e+02 Score=20.21 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047660 13 LVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 13 ~l~~l~Gi~ll~~Giw~~~~ 32 (171)
++-++.|++++..|++....
T Consensus 8 ~~~~~~~~~~i~~gi~~l~~ 27 (136)
T PF08507_consen 8 ILNIIAGILLILAGILSLFN 27 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456777777788776654
No 79
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.08 E-value=4.3e+02 Score=21.76 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhhh
Q 047660 50 ILILVVALARFIG 62 (171)
Q Consensus 50 ~~i~~is~lGc~G 62 (171)
++.|+.+++|-.|
T Consensus 32 ~~~F~~~ml~~~G 44 (284)
T PF12805_consen 32 LLTFFFGMLGVYG 44 (284)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444333
No 80
>PRK10209 acid-resistance membrane protein; Provisional
Probab=22.72 E-value=3.7e+02 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhchh
Q 047660 46 IILGILILVVALARFIGGFWRIH 68 (171)
Q Consensus 46 i~~G~~i~~is~lGc~Ga~~e~~ 68 (171)
+.+|+..++-|+.....|.|.++
T Consensus 109 ~l~g~~~iv~Gi~~i~~a~~~~~ 131 (190)
T PRK10209 109 AFIAGLFCVGGIIRLMSGYKQRK 131 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 45677777888888887776543
No 81
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=22.28 E-value=4e+02 Score=21.58 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 047660 46 IILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLA 86 (171)
Q Consensus 46 i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el 86 (171)
|.+-.+-.++-.+|..||.+-++..+..|.+-..+=+..-+
T Consensus 37 Il~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNv 77 (200)
T PF05640_consen 37 ILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNV 77 (200)
T ss_pred HHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhH
Confidence 44455555566889999999999999999987776555444
No 82
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=22.25 E-value=1.2e+02 Score=25.45 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHhhheee
Q 047660 62 GGFWRIHWLLILYLVAMLILIILLACLVVFIYMVM 96 (171)
Q Consensus 62 Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~~~ 96 (171)
|-.-.++.++.++.++|+++.+.-++.+++.+-.-
T Consensus 5 Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl 39 (264)
T PF04790_consen 5 GIYGWRKRCLYLFVLLLFILAIINLALTIWILKVL 39 (264)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 33446778888899999999999999988877654
No 83
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=22.11 E-value=1.6e+02 Score=20.62 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047660 6 NVIRPINLVAILLSIPVIGAGIWLATE 32 (171)
Q Consensus 6 ~~l~~~N~l~~l~Gi~ll~~Giw~~~~ 32 (171)
..++++..+.++++..++..|......
T Consensus 38 ~~~~v~SWi~f~ia~~~ll~ga~~n~~ 64 (97)
T PF06749_consen 38 VVFFVLSWIVFIIAEALLLAGASMNAR 64 (97)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456777777788888888888877643
No 84
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.99 E-value=73 Score=30.78 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhheeee
Q 047660 68 HWLLILYLVAMLILIILLACLVVFIYMVMI 97 (171)
Q Consensus 68 ~~lL~~y~~~l~vl~~~el~~~i~~~~~~~ 97 (171)
.|.-.+|.++|+++.+..++..+.+|+-..
T Consensus 136 ~c~R~~l~~~L~~~~~~il~g~i~aF~~n~ 165 (806)
T PF05478_consen 136 ACRRGCLGILLLLLTLIILFGVICAFVANQ 165 (806)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666665543
No 85
>KOG4556 consensus Predicted membrane protein [Function unknown]
Probab=21.76 E-value=4.1e+02 Score=21.25 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 44 PVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 44 ~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
.-|..-.+=+++-.+|..|+...++..+.+|..-+.+-...-
T Consensus 32 apilanFvhIiivIlGLFGtiQyR~ryl~~y~~w~alwVtwN 73 (205)
T KOG4556|consen 32 APILANFVHIIIVILGLFGTIQYRRRYLYTYASWLALWVTWN 73 (205)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHh
Confidence 334445555566678899999999999999998877655444
No 86
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=21.71 E-value=4e+02 Score=21.37 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047660 11 INLVAILLSIPVIGAGIWL 29 (171)
Q Consensus 11 ~N~l~~l~Gi~ll~~Giw~ 29 (171)
.|++-...|++-+..||-+
T Consensus 43 sNiisv~Sgll~I~~GI~A 61 (188)
T PF12304_consen 43 SNIISVTSGLLSIICGIVA 61 (188)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3444445555555555443
No 87
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=21.36 E-value=1.8e+02 Score=25.06 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc--h-hhhh------------hHHHHHHHHHHHHHHHHhhhhhh
Q 047660 12 NLVAILLSIPVIGAGIWLATEADNS--C-VKLL------------QWPVIILGILILVVALARFIGGF 64 (171)
Q Consensus 12 N~l~~l~Gi~ll~~Giw~~~~~~~~--~-~~~~------------~~~~i~~G~~i~~is~lGc~Ga~ 64 (171)
+.+++++|+.++..++....|++.. . ...+ ..|-.+.|+++++++.+.-+|-.
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk~np~R~gt~lFW~llg~~F~~G~~lp~~~~G~lvl~m~~la~~~~v 69 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDKTNPKRIGTALFWGLLGLIFIFGDYLPPFVVGILVLVMALLAGFGQV 69 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHcCCC
Confidence 4678999999999999988775321 0 0111 11346778888888877665544
No 88
>MTH00192 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=21.34 E-value=3e+02 Score=19.26 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhccccchhh-hhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 047660 16 ILLSIPVIGAGIWLATEADNSCVK-LLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYM 94 (171)
Q Consensus 16 ~l~Gi~ll~~Giw~~~~~~~~~~~-~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~ 94 (171)
.+++..+...|++.........-. ....-++..|+.+.++.+....+... =..+.++.+.+-.+|.+.|.-..+
T Consensus 6 l~~~~~lf~~g~~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~~-----g~~~~l~~l~~a~cEaalGLsllv 80 (99)
T MTH00192 6 LLVSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLL-----GIIFSLMVLTVAAAESAIGLAILV 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777787766431111111 12223566776666666654442211 113444444556679887665554
Q ss_pred ee
Q 047660 95 VM 96 (171)
Q Consensus 95 ~~ 96 (171)
.-
T Consensus 81 ~~ 82 (99)
T MTH00192 81 AY 82 (99)
T ss_pred HH
Confidence 43
No 89
>MTH00180 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=21.09 E-value=3e+02 Score=19.23 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhccccchhh-hhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047660 15 AILLSIPVIGAGIWLATEADNSCVK-LLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIY 93 (171)
Q Consensus 15 ~~l~Gi~ll~~Giw~~~~~~~~~~~-~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~ 93 (171)
++++|..+...|++.........-. ....-++..++.+..+.+....+... =..+..+.+.+-.+|.+.|....
T Consensus 5 ~l~~~~~lf~~gl~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~~-----g~~~~l~~l~~aacEaalGLsll 79 (99)
T MTH00180 5 YLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLI-----GQIFTIMILTVAAAESAIGLAIL 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888866431111101 12222556665555544443332210 01334444445567988876655
Q ss_pred eeeec
Q 047660 94 MVMIK 98 (171)
Q Consensus 94 ~~~~~ 98 (171)
+...|
T Consensus 80 V~~~R 84 (99)
T MTH00180 80 VAYYR 84 (99)
T ss_pred HHHHH
Confidence 54433
No 90
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=20.53 E-value=2e+02 Score=16.93 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047660 73 LYLVAMLILIILLACLV 89 (171)
Q Consensus 73 ~y~~~l~vl~~~el~~~ 89 (171)
.|.+.|.++|++.++.+
T Consensus 18 ~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 18 AFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666555443
No 91
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=20.39 E-value=98 Score=20.11 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 047660 44 PVIILGILILVVALARFI 61 (171)
Q Consensus 44 ~~i~~G~~i~~is~lGc~ 61 (171)
..-++|+.++++|++|+.
T Consensus 35 ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 35 VAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777888888864
No 92
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.13 E-value=1e+03 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 047660 4 SNNVIRPINLVAILLSIPVIGAGIWLAT 31 (171)
Q Consensus 4 ~~~~l~~~N~l~~l~Gi~ll~~Giw~~~ 31 (171)
+..++++|-+..+++=+ ++.++.|...
T Consensus 72 AD~L~~LFGl~AYLLP~-LL~~~a~~l~ 98 (1355)
T PRK10263 72 ADTLFFIFGVMAYTIPV-IIVGGCWFAW 98 (1355)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence 44455555554444433 3344555543
Done!