Query 047660
Match_columns 171
No_of_seqs 148 out of 823
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 82.6 0.093 3.2E-06 34.8 -2.2 14 119-132 36-54 (90)
2 3rko_K NADH-quinone oxidoreduc 52.3 50 0.0017 22.1 8.5 76 16-96 8-83 (100)
3 4aq5_E Acetylcholine receptor 27.4 2.1E+02 0.007 24.6 7.7 85 7-93 219-304 (488)
4 4aq5_C Acetylcholine receptor 26.0 2.3E+02 0.0078 24.6 7.8 85 6-93 246-331 (522)
5 1oed_C Acetylcholine receptor 20.0 3.2E+02 0.011 21.5 8.8 84 7-93 2-86 (260)
6 1rh5_B Preprotein translocase 17.6 78 0.0027 20.5 2.2 18 44-61 37-54 (74)
7 2klu_A T-cell surface glycopro 16.8 1E+02 0.0035 19.7 2.6 14 46-59 12-25 (70)
8 4aq5_A Acetylcholine receptor 16.5 4.3E+02 0.015 22.4 7.4 77 5-84 234-311 (461)
9 1oed_B Acetylcholine receptor 14.9 4.3E+02 0.015 20.6 7.0 78 7-87 2-80 (250)
10 2ww9_B Protein transport prote 14.3 1E+02 0.0036 20.2 2.2 18 44-61 50-67 (80)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=82.59 E-value=0.093 Score=34.79 Aligned_cols=14 Identities=0% Similarity=-0.137 Sum_probs=9.7
Q ss_pred chhhhhc-----ccccccc
Q 047660 119 GWLCRRV-----RSPYKWD 132 (171)
Q Consensus 119 d~~Q~~~-----~~~~dW~ 132 (171)
|.+|+.+ ++++||.
T Consensus 36 d~iQ~~l~CCG~~~~~Dw~ 54 (90)
T 1g8q_A 36 KTFHETLDCCGSSTLTALT 54 (90)
T ss_dssp HHHHHHHTCCSCTTCGGGH
T ss_pred HHHHHhhcCCCCCChhhhc
Confidence 6677763 6777775
No 2
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=52.30 E-value=50 Score=22.14 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhee
Q 047660 16 ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLACLVVFIYMV 95 (171)
Q Consensus 16 ~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el~~~i~~~~~ 95 (171)
.+.+..+..+|+|....+..-.......-++..++.+.++.+.-..+..- =..+.....++-.+|.+.|....+.
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE~m~l~v~l~l~~~~~~~~~~~-----~~~~~l~~l~~aa~E~alGLallv~ 82 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWGQTD-----GQVMYILAISLAAAEASIGLALLLQ 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHHHHHHHHHHHHHHHHHHTTCSH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888885543322111222233566676666665544433211 1123344444555688776555543
Q ss_pred e
Q 047660 96 M 96 (171)
Q Consensus 96 ~ 96 (171)
.
T Consensus 83 ~ 83 (100)
T 3rko_K 83 L 83 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 3
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=27.40 E-value=2.1e+02 Score=24.62 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 7 VIRPINLVAILLSI-PVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 7 ~l~~~N~l~~l~Gi-~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
..+++|+++=.+-+ ++-.++.|+-.+.. .++......+.++..++...+-.-.=..-.+..++..|+.+.++++.+-
T Consensus 219 ~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~--~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~S 296 (488)
T 4aq5_E 219 LFYIINIIAPCVLISSLVVLVYFLPAQAG--GQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVI 296 (488)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHSC--STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hheehhHhHHHHHHHHHHHHHhcCCcccc--CceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHH
Confidence 44566665422222 33335666654421 1222111112222223332222222223334566777776655555444
Q ss_pred HHHHHhhh
Q 047660 86 ACLVVFIY 93 (171)
Q Consensus 86 l~~~i~~~ 93 (171)
+...++..
T Consensus 297 ll~tv~Vl 304 (488)
T 4aq5_E 297 VTNCVIVL 304 (488)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhEE
Confidence 44344333
No 4
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=26.03 E-value=2.3e+02 Score=24.60 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHH
Q 047660 6 NVIRPINLVAILLSIP-VIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIIL 84 (171)
Q Consensus 6 ~~l~~~N~l~~l~Gi~-ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~ 84 (171)
...+++|+++=.+-+. +-.++.|+-.+. .++......+.++..++...+-.-.=..-.+..++..|+.+.++++.+
T Consensus 246 ~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~---~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~l 322 (522)
T 4aq5_C 246 PLFYVINFITPCVLISFLAALAFYLPAES---GEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTG 322 (522)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHTTHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHH
T ss_pred cceeeeehhhHHHHHHHHHHheeecCCCc---CceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHH
Confidence 3456677655322232 233555554331 112211111222333333333333333334456777777665555544
Q ss_pred HHHHHHhhh
Q 047660 85 LACLVVFIY 93 (171)
Q Consensus 85 el~~~i~~~ 93 (171)
-+...++..
T Consensus 323 Sll~tviVl 331 (522)
T 4aq5_C 323 VVVNCGIVL 331 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHheEE
Confidence 444344333
No 5
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=20.02 E-value=3.2e+02 Score=21.46 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 7 VIRPINLVAILLSIPVIG-AGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 7 ~l~~~N~l~~l~Gi~ll~-~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
+.+++|++.=-+.+.++. +|.|+=.+. .++......+.++..+++.-+---.=.--++..++..|+.+-+++..+-
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~~---gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s 78 (260)
T 1oed_C 2 LFYVINFITPCVLISFLASLAFYLPAES---GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 78 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCCC---CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHH
Confidence 456788776444444444 566765542 2233222233344444444444444444556777888877665555554
Q ss_pred HHHHHhhh
Q 047660 86 ACLVVFIY 93 (171)
Q Consensus 86 l~~~i~~~ 93 (171)
+...++..
T Consensus 79 ~~~tv~vl 86 (260)
T 1oed_C 79 IVNCGIVL 86 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhee
Confidence 44444443
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=17.59 E-value=78 Score=20.49 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 047660 44 PVIILGILILVVALARFI 61 (171)
Q Consensus 44 ~~i~~G~~i~~is~lGc~ 61 (171)
..-++|+.++++|++|+.
T Consensus 37 iak~~~iG~~imG~IGfi 54 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGYI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777778888763
No 7
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=16.76 E-value=1e+02 Score=19.68 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 047660 46 IILGILILVVALAR 59 (171)
Q Consensus 46 i~~G~~i~~is~lG 59 (171)
|++|...-++.|.|
T Consensus 12 ivlGg~~~lll~~g 25 (70)
T 2klu_A 12 IVLGGVAGLLLFIG 25 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 56666554444444
No 8
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=16.52 E-value=4.3e+02 Score=22.41 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 047660 5 NNVIRPINLVAILLSI-PVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILII 83 (171)
Q Consensus 5 ~~~l~~~N~l~~l~Gi-~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~ 83 (171)
+...+++|++.=.+-+ ++-.++.|+-.+.. ++......+.++..++....---.=...+...++..|+.+-++++.
T Consensus 234 ~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~---eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~ 310 (461)
T 4aq5_A 234 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG---EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVI 310 (461)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG---GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred cccceeeehhhhHHHHHHHHHheEecccccc---ceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHH
Confidence 3456777766532223 33335666654432 2332212222333333333333333333344566666655444444
Q ss_pred H
Q 047660 84 L 84 (171)
Q Consensus 84 ~ 84 (171)
+
T Consensus 311 ~ 311 (461)
T 4aq5_A 311 S 311 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=14.94 E-value=4.3e+02 Score=20.61 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 7 VIRPINLVAILLSIPVIG-AGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 7 ~l~~~N~l~~l~Gi~ll~-~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
+.+++|++.=-+.+.++. ++.|+-.+. .++......+.++..+++..+---.=..-+...++..|+..-+++..+-
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~ds---gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~s 78 (250)
T 1oed_B 2 LFYIVYTIIPCILISILAILVFYLPPDA---GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFS 78 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHheeCCCC---CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHH
Confidence 356777765333333333 566665543 2243222233344444444443334444445666666666544444433
Q ss_pred HH
Q 047660 86 AC 87 (171)
Q Consensus 86 l~ 87 (171)
+.
T Consensus 79 l~ 80 (250)
T 1oed_B 79 VI 80 (250)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=14.26 E-value=1e+02 Score=20.21 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 047660 44 PVIILGILILVVALARFI 61 (171)
Q Consensus 44 ~~i~~G~~i~~is~lGc~ 61 (171)
..-++|+-++++|++|+.
T Consensus 50 iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 50 IVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355677777888888864
Done!