Query 047660
Match_columns 171
No_of_seqs 148 out of 823
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 23:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047660.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047660hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 65.6 12 0.00084 27.0 7.6 87 7-96 2-89 (260)
2 d1oeda_ f.36.1.1 (A:) Acetylch 46.2 43 0.0032 23.4 7.9 83 8-93 3-86 (227)
3 d1oedb_ f.36.1.1 (B:) Acetylch 37.9 48 0.0035 23.3 7.0 82 7-91 2-84 (250)
4 d1oede_ f.36.1.1 (E:) Acetylch 31.1 50 0.0036 23.4 6.0 75 8-84 3-78 (260)
5 d1h6va3 d.87.1.1 (A:367-499) M 24.1 14 0.001 24.4 1.5 13 159-171 121-133 (133)
6 d1rh5b_ f.23.28.1 (B:) Preprot 18.1 44 0.0032 19.1 2.6 18 44-61 26-43 (56)
7 d1q90l_ f.23.24.1 (L:) PetL su 12.0 93 0.0067 15.2 3.4 21 10-30 4-24 (32)
8 d1omca_ g.3.6.1 (A:) Conotoxin 10.3 72 0.0052 15.0 1.6 16 135-150 6-21 (27)
9 d1uoya_ g.3.19.1 (A:) Bubble p 7.8 37 0.0027 19.6 -0.2 19 128-148 40-58 (64)
10 d1v54m_ f.23.7.1 (M:) Mitochon 7.7 1.4E+02 0.01 15.9 2.4 17 46-62 15-31 (43)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=65.59 E-value=12 Score=27.03 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 7 VIRPINLVA-ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 7 ~l~~~N~l~-~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
+.+++|+++ .++=.++-.+|.|+=.+. .++......+.++..++......-.=...+...++..|+.+.++++.+-
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~lp~~~---~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s 78 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFYLPAES---GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 78 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHeeeCCCC---CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 357788776 433344455777775443 2233222334445555555555555555566778877777766666665
Q ss_pred HHHHHhhheee
Q 047660 86 ACLVVFIYMVM 96 (171)
Q Consensus 86 l~~~i~~~~~~ 96 (171)
++..++....+
T Consensus 79 ~~~t~~Vl~~~ 89 (260)
T d1oedc_ 79 IVNCGIVLNFH 89 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheeee
Confidence 55555554443
No 2
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=46.17 E-value=43 Score=23.41 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=39.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 047660 8 IRPINLVA-ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILLA 86 (171)
Q Consensus 8 l~~~N~l~-~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~el 86 (171)
.+++|+++ .++=+++-.+|.|+-.+. .++........++..++...+-.-.=..-++..++..|+...++++.+-+
T Consensus 3 yy~~~li~P~~li~~ls~~~F~lp~~s---~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl 79 (227)
T d1oeda_ 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS---GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred EEEehHHHHHHHHHHHHHHHheecCCC---CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence 46677665 333334445777775442 23432222333444444444433332233455666666666555555444
Q ss_pred HHHHhhh
Q 047660 87 CLVVFIY 93 (171)
Q Consensus 87 ~~~i~~~ 93 (171)
+..++..
T Consensus 80 i~tiiV~ 86 (227)
T d1oeda_ 80 IITVVVI 86 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444433
No 3
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=37.90 E-value=48 Score=23.34 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=40.3
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 047660 7 VIRPINLVA-ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIILL 85 (171)
Q Consensus 7 ~l~~~N~l~-~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~e 85 (171)
+.+++|+++ .++=.++-.+|.|+=.+. .++.....-+.++..++...+-.-.=..-+...++..|+.+.++++.+=
T Consensus 2 l~y~~~~~~P~~~i~~l~~~~f~~p~~~---~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~ 78 (250)
T d1oedb_ 2 LFYIVYTIIPCILISILAILVFYLPPDA---GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFS 78 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHH
T ss_pred cEEEEeHHHHHHHHHHHHHHHheecCCC---CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHH
Confidence 356778766 222233445677765543 2233222233444444544444444444455566666666655554443
Q ss_pred HHHHHh
Q 047660 86 ACLVVF 91 (171)
Q Consensus 86 l~~~i~ 91 (171)
+...++
T Consensus 79 ~~~~~~ 84 (250)
T d1oedb_ 79 VILSVV 84 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 333333
No 4
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=31.10 E-value=50 Score=23.41 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHH
Q 047660 8 IRPINLVA-ILLSIPVIGAGIWLATEADNSCVKLLQWPVIILGILILVVALARFIGGFWRIHWLLILYLVAMLILIIL 84 (171)
Q Consensus 8 l~~~N~l~-~l~Gi~ll~~Giw~~~~~~~~~~~~~~~~~i~~G~~i~~is~lGc~Ga~~e~~~lL~~y~~~l~vl~~~ 84 (171)
.+++|+++ .++=.++-.+|.|+-.+.. .++.....-+.++..++....-.-.=..-+...++..|+...++++.+
T Consensus 3 yY~~~lilP~~li~~ls~~~F~lp~~~~--g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~ 78 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFLPAQAG--GQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSML 78 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheEecCCCC--CCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHH
Confidence 45667655 2222233446777765431 223322222333333333333333333334556666565544444443
No 5
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.14 E-value=14 Score=24.43 Aligned_cols=13 Identities=15% Similarity=-0.194 Sum_probs=10.3
Q ss_pred hcCCCCCCCCCCC
Q 047660 159 NAHITPLQVIIIN 171 (171)
Q Consensus 159 ~~~lspiqsgCc~ 171 (171)
+....|.|+|||-
T Consensus 121 ~s~~~~~~~~cc~ 133 (133)
T d1h6va3 121 RSGGDILQSGCCG 133 (133)
T ss_dssp GGCCCCCCCSCCC
T ss_pred hccCCccccCCCC
Confidence 4467899999993
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=18.10 E-value=44 Score=19.08 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 047660 44 PVIILGILILVVALARFI 61 (171)
Q Consensus 44 ~~i~~G~~i~~is~lGc~ 61 (171)
...+.|+-++++|+.|+.
T Consensus 26 ia~v~~iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 26 VAKVTALGISLLGIIGYI 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677777888888863
No 7
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.01 E-value=93 Score=15.17 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047660 10 PINLVAILLSIPVIGAGIWLA 30 (171)
Q Consensus 10 ~~N~l~~l~Gi~ll~~Giw~~ 30 (171)
+.+.+=.++|...+..|+|+-
T Consensus 4 i~syvglligal~~tlgiylg 24 (32)
T d1q90l_ 4 ITSYVGLLIGALVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777788888753
No 8
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=10.31 E-value=72 Score=14.97 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=10.9
Q ss_pred cccccCCCCCCCCccC
Q 047660 135 KSYLSSTQMCPELNQS 150 (171)
Q Consensus 135 ~sC~~~~~~C~~~~~~ 150 (171)
.||...+.+|++.-..
T Consensus 6 sscsptsynccrscnp 21 (27)
T d1omca_ 6 SSCSPTSYNCCRSCNP 21 (27)
T ss_dssp CBCCTTTTCBSSCEET
T ss_pred CcCCCcccchhcccCc
Confidence 4687778888766543
No 9
>d1uoya_ g.3.19.1 (A:) Bubble protein {Penicillium brevicompactum [TaxId: 5074]}
Probab=7.80 E-value=37 Score=19.58 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=13.9
Q ss_pred ccccccccccccCCCCCCCCc
Q 047660 128 PYKWDRIKSYLSSTQMCPELN 148 (171)
Q Consensus 128 ~~dW~~~~sC~~~~~~C~~~~ 148 (171)
...|.++|.| .+..|++.|
T Consensus 40 gGkWTEiqDC--~~stC~G~n 58 (64)
T d1uoya_ 40 GGKWTEVQDC--GSSSCKGTS 58 (64)
T ss_dssp TTEEEEEEEC--SSSCCEEET
T ss_pred CCceEEeeec--Ccccccccc
Confidence 3569999988 357787766
No 10
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.75 E-value=1.4e+02 Score=15.86 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 047660 46 IILGILILVVALARFIG 62 (171)
Q Consensus 46 i~~G~~i~~is~lGc~G 62 (171)
.++|..+++++|+|=-|
T Consensus 15 ~aigLt~~f~~~L~PaG 31 (43)
T d1v54m_ 15 QAIGLSVTFLSFLLPAG 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHH
Confidence 56788888888887655
Done!