BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047662
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 146/241 (60%), Gaps = 18/241 (7%)
Query: 54 LCHSTYELESEAF----TVVPELLPIGPLLA-------GNRLGNSAGHFWREDSSCLEWL 102
L ++ ELES+ + +P + PIGPL + ++L + + W+ED+ CL+WL
Sbjct: 230 LLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWL 289
Query: 103 DQQQPSSVLYAAFGSFTILDQVQFQELAFGLELCNRPFLWVVRPDITTDANDRYPDGFQE 162
+ ++P SV+Y FGS T++ Q E A+GL C + FLW++RPD+ + + F
Sbjct: 290 ESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTN 349
Query: 163 RVSARGRMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLNEKY 222
++ RG + W PQ KVLNHPSI FL+HCGWNST E + G+P LCWP+FA+Q + ++
Sbjct: 350 EIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRF 409
Query: 223 ICDIWKVGLRFDKNESGIITREEIKNKVDQVLG---HQDFKARALELKEKAMSSIREGGS 279
IC+ W++G+ D N + REE+ +++V+ + K +A+ELK+KA + R GG
Sbjct: 410 ICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGC 465
Query: 280 S 280
S
Sbjct: 466 S 466
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 136/269 (50%), Gaps = 29/269 (10%)
Query: 40 LDRNMRAMRAVNFQLCHSTYELESEAFTVV-------PELLPIGPLLAGNRLGNSAGHFW 92
L N + + L ++ +ELE A + P + P+GPL+ +G
Sbjct: 197 LLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLV---NIGKQEAK-Q 252
Query: 93 REDSSCLEWLDQQQPSSVLYAAFGSFTILDQVQFQELAFGLELCNRPFLWVVRPDITTDA 152
E+S CL+WLD Q SVLY +FGS L Q ELA GL + FLWV+R + A
Sbjct: 253 TEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIR-SPSGIA 311
Query: 153 NDRY-------------PDGFQERVSARGRMIG-WAPQQKVLNHPSIACFLSHCGWNSTM 198
N Y P GF ER RG +I WAPQ +VL HPS FL+HCGWNST+
Sbjct: 312 NSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTL 371
Query: 199 EGVSNGIPFLCWPYFAEQFLNEKYICDIWKVGLRFDKNESGIITREEIKNKVDQVLGHQD 258
E V +GIP + WP +AEQ +N + + + LR + G++ REE+ V ++ ++
Sbjct: 372 ESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEE 431
Query: 259 FKA---RALELKEKAMSSIREGGSSRKTF 284
K + ELKE A +++ G+S K
Sbjct: 432 GKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 27/290 (9%)
Query: 10 IAPNMPEMNSGDCFWTNIGDLNT------QKIIFDLLDRNMRAMRAVNFQLCHSTYELES 63
+ P PE+ + D I D++ K+ +L N A+ + F H +E+
Sbjct: 178 VLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINS--FATIHPL--IEN 233
Query: 64 EAFTVVPELLPIGPL-LAGNRLGNSAGHFWREDSSCLEWLDQQQPSSVLYAAFGSFTILD 122
E + LL +GP L + S H CLEWLDQ + SSV+Y +FGS
Sbjct: 234 ELNSKFKLLLNVGPFNLTTPQRKVSDEH------GCLEWLDQHENSSVVYISFGSVVTPP 287
Query: 123 QVQFQELAFGLELCNRPFLWVVRPDITTDANDRYPDGFQERVSARGRMIGWAPQQKVLNH 182
+ LA LE C PF+W R D ++ P GF ER +G+++ WAPQ ++L H
Sbjct: 288 PHELTALAESLEECGFPFIWSFR----GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKH 343
Query: 183 PSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLNEKYICDIWKVGLRFDKNESGIIT 242
S+ FL+H GWNS +E + G+P + P+F +Q LN + ++G+ D +G++T
Sbjct: 344 SSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD---NGVLT 400
Query: 243 REEIKNKVDQVLGHQD---FKARALELKEKAMSSIREGGSSRKTFQNFLE 289
+E IK ++ + + + + ++LKE A ++ + G+S F ++
Sbjct: 401 KESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Query: 96 SSCLEWLDQQQPSSVLYAAFGSFTILDQVQFQELAFGLELCNRPFLWVVRPDITTDANDR 155
+ CL+WL +++P+SV+Y +FG+ T + L+ LE PF+W +R A
Sbjct: 259 TGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR----DKARVH 314
Query: 156 YPDGFQERVSARGRMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAE 215
P+GF E+ G ++ WAPQ +VL H ++ F++HCGWNS E V+ G+P +C P+F +
Sbjct: 315 LPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGD 374
Query: 216 QFLNEKYICDIWKVGLRFDKNESGIITREEIKNKVDQVLGHQ---DFKARALELKEKAMS 272
Q LN + + D+ ++G+R E G+ T+ + + DQ+L + + L+E A
Sbjct: 375 QRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADR 431
Query: 273 SIREGGSSRKTFQNFLEWL 291
++ GSS + F ++ +
Sbjct: 432 AVGPKGSSTENFITLVDLV 450
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 69 VPELLPIGPLLAGNRLGNSAGHFWREDSSCLEWLDQQQPSSVLYAAFGSFTI-LDQVQFQ 127
+P + +GPLL N + D L+WLD+Q SV++ FGS + Q +
Sbjct: 238 IPPIYAVGPLLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIR 296
Query: 128 ELAFGLELCNRPFLWVVRPDITTDANDRYPDGFQE--RVSARGRMIGWAPQQKVLNHPSI 185
E+A GL+ FLW + +P+GF E + +G + GWAPQ +VL H +I
Sbjct: 297 EIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAI 351
Query: 186 ACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLNEKYICDIWKV--GLRFD-KNESGIIT 242
F+SHCGWNS +E + G+P L WP +AEQ LN + W V GLR D + S ++
Sbjct: 352 GGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVA 411
Query: 243 REEIKNKVDQVLGHQDFKARAL-ELKEKAMSSIREGGSSRKTFQNFLE 289
EEI+ + ++ + + E+KE + +++ +GGSS + ++
Sbjct: 412 AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 69 VPELLPIGPLLAGNRLGNSAGHFWREDSSCLEWLDQQQPSSVLYAAFGSFTI-LDQVQFQ 127
+P + +GPLL N + D L+WLD+Q SV++ FGS + Q +
Sbjct: 238 IPPIYAVGPLLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIR 296
Query: 128 ELAFGLELCNRPFLWVVRPDITTDANDRYPDGFQE--RVSARGRMIGWAPQQKVLNHPSI 185
E+A GL+ FLW + +P+GF E + +G + GWAPQ +VL H +I
Sbjct: 297 EIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAI 351
Query: 186 ACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLNEKYICDIWKV--GLRFD-KNESGIIT 242
F+SHCGWNS +E + G+P L WP +AEQ LN + W V GLR D + S ++
Sbjct: 352 GGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVA 411
Query: 243 REEIKNKVDQVLGHQDFKARAL-ELKEKAMSSIREGGSSRKTFQNFLE 289
EEI+ + ++ + + E+KE + +++ +GGSS + ++
Sbjct: 412 AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 173 WAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLNEKYICDIWKVGLR 232
W PQ +L S F++H G STME +SN +P + P AEQ +N + I ++ +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLGRH 368
Query: 233 FDKNESGIITREEIKNKVDQVLGHQDFKARALELKEK 269
+++ +T E+++ V V R ++++
Sbjct: 369 IPRDQ---VTAEKLREAVLAVASDPGVAERLAAVRQE 402
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 169 RMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQ 216
R+ W PQ +L HP F++H G N E + +GIP + P FA+Q
Sbjct: 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 164 VSARGRMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQF 217
V A R+ W PQ +L H + + H G +T+ + G+P L +P+ + F
Sbjct: 290 VPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 173 WAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLN 219
W PQ +L + F++H G + EG++ P + P +QF N
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGN 334
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 169 RMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQFLN-EKYICDIW 227
R +GW P +L + + H G + M + GIP L P +QF + +
Sbjct: 286 RAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRR 343
Query: 228 KVGL--RFDKNESGIITREEIKNKVDQVLGHQDFKARALELKEKAMSSIREGGSSRKTFQ 285
+GL DK ++ ++ R ++G + + A E++E+ ++ + R+ +
Sbjct: 344 GIGLVSTSDKVDADLLRR---------LIGDESLRTAAREVREEMVALPTPAETVRRIVE 394
Query: 286 NF 287
Sbjct: 395 RI 396
>pdb|3CS1|A Chain A, Flagellar Calcium-binding Protein (fcabp) From T. Cruzi
Length = 219
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 232 RFDKNESGIITREEIKNKVDQVLGHQDFKARALELKEKAMSSIREGGSS--RKTFQNFLE 289
+FDKNE+G + +E+ + +VL +F +R ++ ++A R GS K ++F+E
Sbjct: 56 KFDKNETGKLXYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVE 115
Query: 290 WLIF 293
+L F
Sbjct: 116 FLEF 119
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 157 PDGFQE--RVSARGRMIGWAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWP 211
PD E R +GW P V P+ + H G ST+ G+S G+P L P
Sbjct: 252 PDTVAEALRAEVPQARVGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIP 306
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 173 WAPQQKVLNHPSIACFLSHCGWNSTMEGVSNGIPFLCWPYFAEQ 216
W P VL H + AC L+H + +E + G+P + P+FA +
Sbjct: 288 WIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 50 VNFQLCHSTYELESEAFTVVP--ELLPIGPLLAG-NRLGNSAGHFWREDSSCLEWLDQQQ 106
V+F L+ +FTV+P L +GP AG + + F+ S C+ +D Q
Sbjct: 59 VHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR-IDGQD 117
Query: 107 PSSVLYAAFGSF-------------TILDQVQFQELAFGLELCNRPFLWVVRPDITTDAN 153
S V A+ S TI D +++ + G N + DA
Sbjct: 118 ISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG----NDEVEAAAQAAGIHDAI 173
Query: 154 DRYPDGFQERVSARGRMIGWAPQQKV 179
+P+G++ +V RG + +Q+V
Sbjct: 174 MAFPEGYRTQVGERGLKLSGGEKQRV 199
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 20 GDCFWTNIGDLNTQKIIFDLLDRNMRAMRAVNFQLCHSTYELESEAFTVVPELLPIG 76
G+C+ ++G + +I D+ R+M N +L + S FT P+L IG
Sbjct: 39 GECYAASVGPEAMRAVIEDVFARHMEGENPENIELMFR--RVYSSGFTQRPDLTAIG 93
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 20 GDCFWTNIGDLNTQKIIFDLLDRNMRAMRAVNFQLCHSTYELESEAFTVVPELLPIG 76
G+C+ ++G + +I D+ R+M+ N +L + S FT P+L +G
Sbjct: 60 GECYAASVGPQAMRAVIEDVFARHMQGENPENIELMYR--RAYSSGFTQRPDLTVMG 114
>pdb|1B8R|A Chain A, Parvalbumin
Length = 108
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 211 PYFAEQFLNEKYICDIWKVGLRFDKNESGIITREEIKNKVDQVLGHQDFKARALELKEKA 270
+FA+ L K D+ K D+++SG I +E+K L Q+FKA A L +
Sbjct: 28 AFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK------LFLQNFKADARALTDGE 81
Query: 271 MSSIREGGSS 280
+ + G S
Sbjct: 82 TKTFLKAGDS 91
>pdb|1CDP|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
pdb|4CPV|A Chain A, Refined Crystal Structure Of Calcium-Liganded Carp
Parvalbumin 4.25 At 1.5-Angstroms Resolution
pdb|5CPV|A Chain A, Restrained Least Squares Refinement Of Native (Calcium)
And Cadmium-Substituted Carp Parvalbumin Using X-Ray
Crystallographic Data At 1.6-Angstroms Resolution
Length = 109
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 211 PYFAEQFLNEKYICDIWKVGLRFDKNESGIITREEIKNKVDQVLGHQDFKARALELKEKA 270
+FA+ L K D+ K D+++SG I +E+K L Q+FKA A L +
Sbjct: 29 AFFAKVGLTSKSADDVKKAFAIIDQDKSGFIEEDELK------LFLQNFKADARALTDGE 82
Query: 271 MSSIREGGSS 280
+ + G S
Sbjct: 83 TKTFLKAGDS 92
>pdb|2AP1|A Chain A, Crystal Structure Of The Putative Regulatory Protein
Length = 327
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 12 PNMPEMNSGDCFWTNIGDLNTQKIIFDLLDRNMRAMRAVNFQLCHSTYELESEAFTVVPE 71
P MPE G + N+ + + + DL R R +R N C + E + FT P
Sbjct: 89 PGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPL 148
Query: 72 LL 73
++
Sbjct: 149 VM 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,303,785
Number of Sequences: 62578
Number of extensions: 381273
Number of successful extensions: 958
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 22
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)