Your job contains 1 sequence.
>047665
MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL
NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVV
MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGF
TNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKE
VHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEER
DGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKTQLS
HECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVLLKKI
LEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLESVHT
RKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047665
(530 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2127953 - symbol:AT4G35540 species:3702 "Arabi... 993 4.4e-100 1
ZFIN|ZDB-GENE-040801-43 - symbol:brf2 "BRF2, subunit of R... 129 6.9e-06 2
WB|WBGene00000271 - symbol:brf-1 species:6239 "Caenorhabd... 143 9.2e-06 2
POMBASE|SPBC13E7.10c - symbol:brf1 "transcription factor ... 125 0.00012 1
>TAIR|locus:2127953 [details] [associations]
symbol:AT4G35540 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010440 "stomatal lineage progression"
evidence=RCA] InterPro:IPR000812 InterPro:IPR013137 Pfam:PF08271
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0008270
GO:GO:0006352 EMBL:AL161587 Gene3D:1.10.472.10 InterPro:IPR013763
SUPFAM:SSF47954 PANTHER:PTHR11618 EMBL:AL031135 UniGene:At.2408
UniGene:At.50397 IPI:IPI00521742 PIR:T04659 RefSeq:NP_195279.1
ProteinModelPortal:O81787 SMR:O81787 PaxDb:O81787 PRIDE:O81787
EnsemblPlants:AT4G35540.1 GeneID:829706 KEGG:ath:AT4G35540
TAIR:At4g35540 eggNOG:NOG249882 HOGENOM:HOG000242932
InParanoid:O81787 OMA:LLHGANE PhylomeDB:O81787
ProtClustDB:CLSN2686077 ArrayExpress:O81787 Genevestigator:O81787
Uniprot:O81787
Length = 527
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 219/538 (40%), Positives = 307/538 (57%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M C C R++ +G+ C CG ++ +DNY+AQL G GP G Y+ VGT G GS L
Sbjct: 1 MRCKRCNGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVL 60
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVV 120
+YK+KKIYE+N LI+E T +L+L G ++ IK+MI K+TDGEFG G+WFPILIGAC Y V
Sbjct: 61 DYKDKKIYEANNLIEETTERLNL-GNKTEVIKSMISKLTDGEFGQGEWFPILIGACCYAV 119
Query: 121 MRLDDKS-LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNS-RLQ 178
+R + K L + EVA + CD+++LG MI RVV+ L+L+L E D+V +F + + NS RL
Sbjct: 120 VREEGKGVLSMEEVAYEVGCDLHQLGPMIKRVVDHLDLELREFDLVGLFTKTVTNSPRL- 178
Query: 179 GFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPXXXXXXXXXXXXXXXXXKIENVA 238
T++D +++ KQG L+NCA+KWFL+TGRRPMP KI+++A
Sbjct: 179 --TDVDRDKKEKIIKQGTFLMNCALKWFLSTGRRPMPLVVAVLAFVVQVNGVKVKIDDLA 236
Query: 239 KEVHCTVVTCRKRYKELLEALVKVAQ--ALPWGKDVTVKNVLKNAP--FVMNYXXXXXXX 294
K+ ++ TC+ RYKEL E LVKVA+ LPW KDVTVKNVLK++ F +
Sbjct: 237 KDASVSLTTCKTRYKELSEKLVKVAEEVGLPWAKDVTVKNVLKHSGTLFALMEAKSMKKR 296
Query: 295 XXXXXXDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESD-PRYLEVEERSGLALTGVDC 353
+ + G + D+V +CL K+ Y + + RY +VE L+L C
Sbjct: 297 KQGTGKELVRTDGFCVEDLVMDCLSKESMYCYDDDARQDTMSRYFDVEGERQLSL----C 352
Query: 354 VHKTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGV--KGRGGYELHAYRDWWCGXXXX 411
+ +S L+ Y F + + G L + S+ + R + + + +WW G
Sbjct: 353 NYDDNISENQLSTKYNEFEDRVCGGTLAKRSQGSSQSMWQRRSVFGMVSTENWWKGKSEL 412
Query: 412 XXXXXXXXXXXXDVGLDVMPPSFVNGCMVNEXXXXXXXXXXXXXXXXMNPS-RASTGDVD 470
DVGL+ +PPS++ GC+ E +PS S G +
Sbjct: 413 SKRLLLKDLLEKDVGLEALPPSYIKGCVAVERRREKIKAAKLRINAIQHPSDNVSEGALS 472
Query: 471 NVYFLESVHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSG 528
LE H++K KRK +EIDWEDL+I+TL+LH V EEEIE GHY TLLDLHVFNSG
Sbjct: 473 ----LELEHSKK-KRKKGSEIDWEDLVIQTLVLHNVNEEEIEKGHYKTLLDLHVFNSG 525
>ZFIN|ZDB-GENE-040801-43 [details] [associations]
symbol:brf2 "BRF2, subunit of RNA polymerase III
transcription initiation factor, BRF1-like" species:7955 "Danio
rerio" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000812 InterPro:IPR013137
Pfam:PF08271 PROSITE:PS51134 ZFIN:ZDB-GENE-040801-43 GO:GO:0006355
GO:GO:0008270 GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763
SMART:SM00385 SUPFAM:SSF47954 GeneTree:ENSGT00390000002288
OMA:CMLKPPK PANTHER:PTHR11618 EMBL:BX005297 EMBL:CU694484
EMBL:CU929124 IPI:IPI00630870 Ensembl:ENSDART00000020297
Bgee:F1QIW1 Uniprot:F1QIW1
Length = 423
Score = 129 (50.5 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 45/179 (25%), Positives = 80/179 (44%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
IL G C + + R + + + + +L+ D Y++G + + + LNL+ +V I M E
Sbjct: 114 ILAGCCMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES 173
Query: 171 VIRNSRLQGFTNLDE--SMLD-RMRKQGVLLLNCAVKWFLTTGRRPMPXXXXXXXXXXXX 227
+ +L ++E S+ R+ Q LL A ++ TGRRP P
Sbjct: 174 FCYDFKLAP-DEVEEVFSVAQQRLVDQTSALLELAADTWILTGRRPFPLFLAAVYVAWQS 232
Query: 228 XXXXXKIE-------NVAK---EVHC-TVVTCRKRYKELLEALVKVAQALPWGKDVTVK 275
+++ +AK ++ C + T KR ELLE L K+ + LPW + ++
Sbjct: 233 LNPLARMKYSLMKFCKIAKAPEQLWCKSKDTINKRLNELLEVLCKLGRELPWVRPTDIQ 291
Score = 49 (22.3 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 3 CTSCGSKTLTREDISGSL--ICVSCGVV 28
C CGS + +D+ +C CG V
Sbjct: 5 CPECGSSRVVEDDLYSQKQWVCEDCGSV 32
>WB|WBGene00000271 [details] [associations]
symbol:brf-1 species:6239 "Caenorhabditis elegans"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 GO:GO:0005634 GO:GO:0006898 GO:GO:0040007
GO:GO:0045893 GO:GO:0002119 GO:GO:0008270 GO:GO:0000003
GO:GO:0006352 Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385
SUPFAM:SSF47954 eggNOG:COG1405 PANTHER:PTHR11618 EMBL:FO080734
KO:K15196 GeneTree:ENSGT00390000010349 PIR:T16368
RefSeq:NP_495526.1 ProteinModelPortal:Q20429 SMR:Q20429
STRING:Q20429 PaxDb:Q20429 EnsemblMetazoa:F45E12.2.1
EnsemblMetazoa:F45E12.2.2 GeneID:174199 KEGG:cel:CELE_F45E12.2
UCSC:F45E12.2 CTD:174199 WormBase:F45E12.2 InParanoid:Q20429
OMA:CRLENTA NextBio:882969 Uniprot:Q20429
Length = 759
Score = 143 (55.4 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 60/269 (22%), Positives = 103/269 (38%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQ-----AFDNYDAQLYGRDGPT--GIYVHVGTA- 54
C++CGS + + G C +CG V +N + G G T G +V A
Sbjct: 5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSGHTLVGQFVSSERAA 64
Query: 55 -----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G GS + +E + K+IDEL +L + N G
Sbjct: 65 ANNFNGMGSQES-REMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVSRNLTRGRNR 123
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---IVS 166
++ C Y+ RL++ + + + + V +V++LGR + + L + LP D +
Sbjct: 124 SSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRINLPSTDPCLYIM 183
Query: 167 MFERVIR-NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPXXXXXXXXXX 225
F V+ + + NL ++ RM++ W ++TGRRP
Sbjct: 184 RFACVLDFGDKQKEVVNLATRLVQRMKRD----------W-MSTGRRPTGICGAALLIAA 232
Query: 226 XXXXXXXKIENVAKEVHCTVVTCRKRYKE 254
I ++ + VH + RKR E
Sbjct: 233 RSLNFNRSINDIVRVVHISEGVIRKRLDE 261
Score = 40 (19.1 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 460 NPSRASTGDVDNVYFLESVHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEA 513
+PS + +++ F+ +R K KP+ + E +H V E A
Sbjct: 614 SPSTSEVSSIEHKPFVPPARSRYAKVKPIIGAKKLAALNEVKNVHTVPEPSAPA 667
>POMBASE|SPBC13E7.10c [details] [associations]
symbol:brf1 "transcription factor TFIIIB complex
subunit Brf1" species:4896 "Schizosaccharomyces pombe" [GO:0000126
"transcription factor TFIIIB complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006384 "transcription initiation from
RNA polymerase III promoter" evidence=TAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000812
InterPro:IPR011665 InterPro:IPR013137 InterPro:IPR013150
Pfam:PF00382 Pfam:PF07741 Pfam:PF08271 PRINTS:PR00685
PROSITE:PS51134 PomBase:SPBC13E7.10c GO:GO:0045893 GO:GO:0046872
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:1.10.472.10 InterPro:IPR013763 SMART:SM00385 SUPFAM:SSF47954
eggNOG:COG1405 PANTHER:PTHR11618 PROSITE:PS00782 GO:GO:0006384
GO:GO:0000126 HOGENOM:HOG000198688 PIR:T40176 RefSeq:NP_596265.2
STRING:Q9P6R0 EnsemblFungi:SPBC13E7.10c.1 GeneID:2540071
OrthoDB:EOG40P7GP NextBio:20801208 Uniprot:Q9P6R0
Length = 492
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 60/270 (22%), Positives = 103/270 (38%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----------- 49
M C +CGS T + SG+ C CGVV D +++ + TG V
Sbjct: 1 MGCPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQT 60
Query: 50 HVGTAG----TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFG 104
H T G ++ +E I + I L L L +R I+ + F
Sbjct: 61 HARTFGGPYRNQGSVESRELTIANGRRRISALAIALKLN-ERHIEAAVRYFTLAINNNFI 119
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G ++ +C Y+V R+ S + + + +L +V++LG ++ L LP +D
Sbjct: 120 KGRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNLPLLD- 178
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPXXXXXXXXX 224
S++ + R + L F E+ R+ + L+ + ++ GRRP
Sbjct: 179 PSLY--ISRFASLLEFG--PET--HRVANDAIRLVARMNRDWMQIGRRPAGICGACLLIA 232
Query: 225 XXXXXXXXKIENVAKEVHCTVVTCRKRYKE 254
+ V V +T +KR E
Sbjct: 233 ARMNNFRRSVREVVHVVKVADITIQKRLDE 262
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 530 468 0.00098 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 620 (66 KB)
Total size of DFA: 286 KB (2149 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.52u 0.10s 33.62t Elapsed: 00:00:03
Total cpu time: 33.52u 0.10s 33.62t Elapsed: 00:00:03
Start: Tue May 21 04:09:59 2013 End: Tue May 21 04:10:02 2013