BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047665
(530 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255552348|ref|XP_002517218.1| conserved hypothetical protein [Ricinus communis]
gi|223543589|gb|EEF45118.1| conserved hypothetical protein [Ricinus communis]
Length = 532
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/533 (63%), Positives = 414/533 (77%), Gaps = 8/533 (1%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
MPC SCG ++L R+DI+GSL+C SCG VQ FDNY+ G +GP G++V VGT+GTGS L
Sbjct: 1 MPCYSCGHRSLIRDDITGSLVCDSCGTVQKFDNYETHTGGVNGPQGVFVRVGTSGTGSTL 60
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVV 120
NYKEKKI+E+NKLID++ +KL+L GQ+ IK+MID ITDGE+G GDWFP+LIGAC+YVV
Sbjct: 61 NYKEKKIFEANKLIDDIAYKLNLLGQKVTDIKSMIDNITDGEYGQGDWFPVLIGACAYVV 120
Query: 121 MRLDDK-SLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+R ++K +L I+E+ ++ CDVYELGRM+TRVV+ LN+KLPE DIV+ FE+V+RN L
Sbjct: 121 VRNENKTTLSIAEIGDLIGCDVYELGRMVTRVVDHLNIKLPEFDIVTSFEKVVRN--LFN 178
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKIENVA 238
++ +RMR+QGV L+ C + WFLTTGRRP+P+V AVLV V ELNGV V+IE+VA
Sbjct: 179 LGRVESDKFERMREQGVFLIQCMINWFLTTGRRPLPIVAAVLVLVAELNGVEGVRIEDVA 238
Query: 239 KEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKE 298
+EVH V TC+ RYKELLEALVKVAQ LPWGKDVTVKNV+KN PFV+ YMEMKSMEK
Sbjct: 239 REVHAAVSTCKLRYKELLEALVKVAQVLPWGKDVTVKNVVKNGPFVLRYMEMKSMEKCDG 298
Query: 299 ERDGLNCGGIDLGDVVSECLKK-DVEYRIEGGGVE-SDPRYLEVEERSGLALTGVDCVHK 356
R GL+ GG DLG+VVS+CL+K DVEY +E VE D RY EVE S L+ G D + K
Sbjct: 299 HRKGLHYGGFDLGEVVSQCLRKDDVEYGVEEKSVECGDSRYFEVETGSELSKMGDDGMKK 358
Query: 357 TQLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVL 416
QLSHECL+M+Y +F NE GK EE + K + +EL A DWW GKSELSKK+
Sbjct: 359 LQLSHECLSMVYNKFLNEASCGKYKEEIGRAYRRKSKRAFELFA-TDWWNGKSELSKKIF 417
Query: 417 LKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLE 476
LK+ILEKDVGLD+MPPSFVNGC+V ERRRAKINAAK+RI++I++P A +GD ++ L+
Sbjct: 418 LKQILEKDVGLDLMPPSFVNGCVVVERRRAKINAAKLRIERIVHPWTADSGDCSDIDILQ 477
Query: 477 SVHTRKRKRK-PVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSG 528
+HT KRKRK P IDWED +IETLLLHQVKEEEIE GHYNTLLDLHVFNSG
Sbjct: 478 DLHTNKRKRKTPAKGIDWEDFVIETLLLHQVKEEEIEKGHYNTLLDLHVFNSG 530
>gi|225443816|ref|XP_002266602.1| PREDICTED: uncharacterized protein LOC100261683 [Vitis vinifera]
gi|297740496|emb|CBI30678.3| unnamed protein product [Vitis vinifera]
Length = 530
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/529 (55%), Positives = 384/529 (72%), Gaps = 6/529 (1%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C + L R+D++GSL+C SCG+VQ FDNYD QL G +GP G +V VGT GTGS+LNY
Sbjct: 7 CKGCKKEALIRDDVTGSLVCSSCGLVQPFDNYDPQLGGLNGPQGTFVRVGTTGTGSSLNY 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K+KKI+E+ KLID+L FKL + ++S +++ M+ IT+GEFG GDW P+L+GACSYVV R
Sbjct: 67 KDKKIFEAQKLIDDLLFKLGFSSEKSNEVRTMVATITEGEFGQGDWLPVLVGACSYVVRR 126
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTN 182
+++L I+EV SV+ DVYELG+MI RVVEFLNLKLP++DIV+ E +
Sbjct: 127 QSNRALSIAEVGSVIGSDVYELGQMIRRVVEFLNLKLPDIDIVNSLELAF--GQCGSLNR 184
Query: 183 LDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVH 242
+ + +++M KQG L+ CAVKWFLTTGRRP+P++ A+L+FV ELN V V+IEN+A E+H
Sbjct: 185 VSKDKVNKMLKQGTFLVQCAVKWFLTTGRRPLPMIAAILMFVAELNQVDVRIENIANEIH 244
Query: 243 CTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEERDG 302
V T R RYKEL EALVKVAQALPWGKDV+ KN++KNAPFV+ YMEMKS + R+
Sbjct: 245 AGVATTRLRYKELSEALVKVAQALPWGKDVSTKNIIKNAPFVIQYMEMKSRLLPGKRREN 304
Query: 303 LNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKTQLSHE 362
L GG DL VVS+CL K+ +Y +G +E+D +Y E + SGL + D K +LSHE
Sbjct: 305 LESGGFDLDGVVSDCLNKEFDYIPQGYDMENDSQYFEADSESGLDIDNSD---KLKLSHE 361
Query: 363 CLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVLLKKILE 422
CL++IY+RF NE + E+ H K R Y+ A +WW GKS +SKK+LL++ILE
Sbjct: 362 CLSVIYSRFLNEDSRVNPVGENGGDHSRKRRREYDPPAMNEWWNGKSNMSKKLLLEQILE 421
Query: 423 KDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLESVHTRK 482
KDVGLD +PPSFV+GC+ E+RR KINAAK+RI KIM PS+A+ GD + E +H +K
Sbjct: 422 KDVGLDALPPSFVSGCLAYEQRREKINAAKLRISKIMYPSKANMGDTEEFSSEEHLHAKK 481
Query: 483 RKRKPVAE-IDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM 530
++RK IDWED +IETLLLH VKE+EIE GHYNTLLDLHVFNSG +
Sbjct: 482 KRRKTKKNGIDWEDFVIETLLLHHVKEDEIEKGHYNTLLDLHVFNSGCL 530
>gi|225454256|ref|XP_002275055.1| PREDICTED: uncharacterized protein LOC100260157 [Vitis vinifera]
gi|297745306|emb|CBI40386.3| unnamed protein product [Vitis vinifera]
Length = 535
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/543 (53%), Positives = 383/543 (70%), Gaps = 33/543 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C +L R+D++GSL+C SCG++Q FDNYD QL G +GP G +V VGTAGTGS+LNY
Sbjct: 7 CKGCKKNSLIRDDVTGSLVCSSCGLIQPFDNYDPQLGGLNGPQGTFVRVGTAGTGSSLNY 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K+KKI+E+ KLID+L FKL + ++S +++ M+ IT+GEFG GDWFP+L+GACSYVV R
Sbjct: 67 KDKKIFEAQKLIDDLMFKLGFSSEKSNEVRTMVSTITEGEFGQGDWFPVLVGACSYVVRR 126
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTN 182
+++LPI+EV +V+ CDVYELGRMI RVVEFLNLKLPE+DIV+ E R +
Sbjct: 127 RSNRALPIAEVGAVIGCDVYELGRMIGRVVEFLNLKLPELDIVNSLELAFR--KCGSLNR 184
Query: 183 LDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVH 242
+ + +D+M KQG L+ AVKWFLTTGRRP+P++ AVL+FV ELN V V+IEN+A E+H
Sbjct: 185 VSKDKVDQMLKQGKFLVQWAVKWFLTTGRRPLPMIAAVLMFVAELNQVDVRIENIANEIH 244
Query: 243 CTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMK-----SMEKRK 297
V T R RYKEL EALVKVAQ+LPWG DV+ KN++KNAPFV+ YMEMK S + RK
Sbjct: 245 AGVATSRLRYKELSEALVKVAQSLPWGSDVSTKNIVKNAPFVIQYMEMKLRSQLSGKPRK 304
Query: 298 EERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKT 357
+++ L G DL VVSECLKK+ +Y EG +E+ ++R+GL L +D K
Sbjct: 305 GKKN-LERIGFDLDSVVSECLKKEFDYVSEGYSIENGA---AADDRNGLLLD-IDDSDKL 359
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGG----------YELHAYRDWWCG 407
+LS E L+++Y +F N E ++ + GG Y+ ++WW G
Sbjct: 360 KLSQESLSLMYFKFVN---------EGSRVNPMGDDGGDNRRRKRRREYDPPVIKNWWNG 410
Query: 408 KSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTG 467
KS+ SKK+LLK+ILEKDVGL+ +PPSFV+GC+ ERRR KINAAK+RI K+M PS S+
Sbjct: 411 KSDKSKKLLLKQILEKDVGLNALPPSFVSGCLAYERRREKINAAKLRIKKVMYPSNTSSD 470
Query: 468 DVDNVYFLES--VHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
D D+ E +H K++R+ A+IDWED IETLLLH VKE+EIE GHYNTLLDLHVF
Sbjct: 471 DTDDFSAKEQEHLHAEKKRRRAKADIDWEDFAIETLLLHHVKEDEIEKGHYNTLLDLHVF 530
Query: 526 NSG 528
NSG
Sbjct: 531 NSG 533
>gi|147777649|emb|CAN78204.1| hypothetical protein VITISV_019153 [Vitis vinifera]
Length = 535
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/543 (53%), Positives = 382/543 (70%), Gaps = 33/543 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C +L R+D++GSL+C SCG++Q FDNYD QL G +GP G +V VGTAGTGS+LNY
Sbjct: 7 CKGCKKNSLIRDDVTGSLVCSSCGLIQPFDNYDPQLGGLNGPQGTFVRVGTAGTGSSLNY 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K+KKI+E+ KLID+L FKL + ++S +++ M+ IT+GEFG GDWFP+L+GACSYVV R
Sbjct: 67 KDKKIFEAQKLIDDLMFKLGFSSEKSNEVRXMVSTITEGEFGQGDWFPVLVGACSYVVRR 126
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTN 182
+++LPI+EV +V+ CDVYELGRMI RVVEFLNLKLPE+DIV+ E R +
Sbjct: 127 RSNRALPIAEVGAVIGCDVYELGRMIGRVVEFLNLKLPELDIVNSLELAFR--KCGSLNR 184
Query: 183 LDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVH 242
+ + +D+M KQG L+ AVKWFLTTGRRP+P++ AVL+FV ELN V V+IEN+A E+H
Sbjct: 185 VSKDKVDQMLKQGKFLVQWAVKWFLTTGRRPLPMIAAVLMFVAELNQVDVRIENIANEIH 244
Query: 243 CTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMK-----SMEKRK 297
V T R RYKEL EALVKVAQ+LPWG DV+ KN++KNAPFV+ YMEMK S + RK
Sbjct: 245 AGVATSRLRYKELSEALVKVAQSLPWGSDVSTKNIVKNAPFVIQYMEMKLRSQLSGKPRK 304
Query: 298 EERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKT 357
+++ L G DL VVSECLKK+ +Y EG +E+ ++R+GL L +D K
Sbjct: 305 GKKN-LERIGFDLDSVVSECLKKEFDYVSEGYSIENGA---AADDRNGLLLD-IDDSDKL 359
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGG----------YELHAYRDWWCG 407
+LS E L+++Y +F N E ++ + GG Y+ ++WW G
Sbjct: 360 KLSQESLSLMYXKFVN---------EGSRVNPMGDDGGDNRRRKRRREYDPPVIKNWWNG 410
Query: 408 KSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTG 467
KS+ SKK+LLK+ILEKDVGL+ +PPSFV+GC+ ERRR KINAAK+RI K+M PS S+
Sbjct: 411 KSDKSKKLLLKQILEKDVGLNALPPSFVSGCLAYERRREKINAAKLRIKKVMYPSNTSSD 470
Query: 468 DVDNVYFLES--VHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
D D+ E +H K++R+ +IDWED IETLLLH VKE+EIE GHYNTLLDLHVF
Sbjct: 471 DTDDFSAKEQEHLHAEKKRRRAKXDIDWEDFAIETLLLHHVKEDEIEKGHYNTLLDLHVF 530
Query: 526 NSG 528
NSG
Sbjct: 531 NSG 533
>gi|356497852|ref|XP_003517770.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Glycine
max]
Length = 536
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 300/545 (55%), Positives = 394/545 (72%), Gaps = 30/545 (5%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALN 61
PCT CG + R+DISG LIC SCG VQ FD +DAQ+ G DGP G ++HVGTAG+GS +
Sbjct: 6 PCTYCGRASFIRDDISGELICSSCGGVQQFDQFDAQIGGIDGPQGTFIHVGTAGSGSLYS 65
Query: 62 YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVM 121
Y+E+K++ + LIDE+T +L L+ +S +++MI IT+GEFG G+WF +LIGAC+YVVM
Sbjct: 66 YRERKLFAAQNLIDEVTNQLGLS-SKSGDVRSMISTITEGEFGQGEWFHVLIGACAYVVM 124
Query: 122 RLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK--LPEVDIVSMFERVIRNSRLQG 179
R +D+ LP++EVAS + CDVYE+GRMI RVV+FLNL+ PE DIV + ER IRN G
Sbjct: 125 RKEDRPLPMAEVASAIGCDVYEIGRMILRVVDFLNLRPDFPEFDIVHLLERTIRNC--NG 182
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
F +++ +++RMRKQGV L+ CAVKW+L+TGRRP+P+VVAVLVFV ELNGV V +E +AK
Sbjct: 183 FASVERDLIERMRKQGVFLIQCAVKWYLSTGRRPVPLVVAVLVFVAELNGVGVGMEELAK 242
Query: 240 EVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEE 299
EVH V TCR RYKELLE LVKVAQ LPWGKDVTVKN++KNAP V+ YME K+M K ++
Sbjct: 243 EVHAKVSTCRARYKELLETLVKVAQVLPWGKDVTVKNIVKNAPIVIQYMERKAMLKPGKK 302
Query: 300 RDGLNCGGIDLGDVVSECLKKD--VEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKT 357
R+GL+ +DL DVV+ECL+ D EY ++G D +Y +E +G G
Sbjct: 303 REGLDRAAVDLEDVVAECLRNDGEFEYGVDGMTKRKDSQYFSLESNAGRVGGGDS--DGL 360
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGG--------YELHAYRDWWCGKS 409
Q+S ECL+++Y +F L+E+ I ++G G ++L R+WW GKS
Sbjct: 361 QISPECLSLLYKKF---------LDENCCIESLRGSGNAQKRRVLRFDLLECREWWDGKS 411
Query: 410 ELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDV 469
ELSKK+LL ++LEKDVG+D MPPSFVNG + E RR +INAAK+RI +IM+PS A GD
Sbjct: 412 ELSKKLLLNRLLEKDVGVDTMPPSFVNGQLKCEMRRERINAAKVRIKRIMHPSDADLGDA 471
Query: 470 DNVYFLESVHTRKRKRKP----VAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
+ L+S + +R++K V ++DWEDLIIETL+LH+VKEEEIE GHYNTLLDLHVF
Sbjct: 472 EIPCPLDSSYPERRRKKRKGMVVDDVDWEDLIIETLVLHRVKEEEIEKGHYNTLLDLHVF 531
Query: 526 NSGIM 530
NSGI+
Sbjct: 532 NSGIV 536
>gi|147778777|emb|CAN71581.1| hypothetical protein VITISV_003231 [Vitis vinifera]
Length = 503
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/529 (52%), Positives = 364/529 (68%), Gaps = 33/529 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C + L R+D++GSL+C SCG+VQ FDNYD QL G +GP G +V VGT GTGS+LNY
Sbjct: 7 CKGCXKEALIRDDVTGSLVCSSCGLVQPFDNYDPQLGGLNGPQGTFVRVGTTGTGSSLNY 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K+KKI+E+ KLID+L FKL + ++S +++ M+ IT+GEFG GDW P+L GACSYVV R
Sbjct: 67 KDKKIFEAQKLIDDLLFKLGFSSEKSNEVRTMVATITEGEFGQGDWLPVLXGACSYVVRR 126
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTN 182
+++L I+EV SV+ DVYELG+MI RVVEFLNLKLP++DIV+ E +
Sbjct: 127 QSNRALSIAEVGSVIGSDVYELGQMIRRVVEFLNLKLPDIDIVNSLELAF--GQCGSLNR 184
Query: 183 LDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVH 242
+ + +++M KQG L+ CAVKWFLTTGRRP+P++ A+L+
Sbjct: 185 VSKDKVNKMLKQGTFLVQCAVKWFLTTGRRPLPMIAAILML------------------- 225
Query: 243 CTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEERDG 302
RYKEL EALVKVAQALPWGKDV+ KN++KNAPFV+ YMEMKS + R+
Sbjct: 226 --------RYKELSEALVKVAQALPWGKDVSTKNIIKNAPFVIQYMEMKSRLLPGKRREN 277
Query: 303 LNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKTQLSHE 362
L GG DL VVS+CL K+ +Y +G +E+D +Y E + SGL + D K +LSHE
Sbjct: 278 LESGGFDLDGVVSDCLNKEFDYIPQGYDMENDSQYFEADSESGLDIDNSD---KLKLSHE 334
Query: 363 CLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVLLKKILE 422
CL++IY+RF NE + E+ H K R Y+ A +WW GKS +SKK+LL++ILE
Sbjct: 335 CLSVIYSRFLNEDSRVNPVGENGGDHSRKRRREYDPPAMNEWWNGKSNMSKKLLLEQILE 394
Query: 423 KDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLESVHTRK 482
KDVGLD +PPSFV+GC+ E+RR KINAAK+RI KIM PS+A+ GD + E +H +K
Sbjct: 395 KDVGLDALPPSFVSGCLAYEQRREKINAAKLRISKIMYPSKANMGDTEEFSSEEHLHAKK 454
Query: 483 RKRKPVAE-IDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM 530
++RK IDWED +IETLLLH VKE+EIE GHYNTLLDLHVFNSG +
Sbjct: 455 KRRKTKKNGIDWEDFVIETLLLHHVKEDEIEKGHYNTLLDLHVFNSGCL 503
>gi|224077348|ref|XP_002305222.1| predicted protein [Populus trichocarpa]
gi|222848186|gb|EEE85733.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 306/536 (57%), Positives = 384/536 (71%), Gaps = 13/536 (2%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M C +CG +TL R+D + ++IC SCG VQ F NY + + +GPTG+++ +G++G GS L
Sbjct: 1 MSCKACGLRTLIRDDATENMICDSCGTVQDFANYQERTFNINGPTGVFISIGSSGCGSVL 60
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKITDGEFGLGD--WFPILIGACS 117
NY+EKKIYE+N LID++ FK+ LTG + +I++MI K+TDGEFG + WF I +GAC
Sbjct: 61 NYREKKIYEANNLIDDIVFKVGLTGGSKVSEIRDMISKVTDGEFGSSESRWFSIFVGACV 120
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
YVVMR DKSL I EV+SV+ CD++ELGRM+ RVVE L +KLP DIV FERV+R+ +
Sbjct: 121 YVVMRNGDKSLSIEEVSSVVGCDIHELGRMVVRVVEHLGMKLPGFDIVGSFERVVRSLSI 180
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKIEN 236
++ +L+RMRKQG+ L+ CAVKWFLTTGRRP+PVVVAVL V ELNGV VKIE
Sbjct: 181 S--DRVEGDVLERMRKQGIFLVQCAVKWFLTTGRRPLPVVVAVLALVAELNGVEGVKIEE 238
Query: 237 VAKEVHCTVVTCRKRYKELLEALVKVAQA-LPWGKDVTVKNVLKNAPFVMNYMEMKSMEK 295
VA+EVH V TCR RYKELLE + KVAQ LPWGKDV VKN +KNAPFV+ Y+EMK M K
Sbjct: 239 VAREVHVAVSTCRLRYKELLEVIAKVAQEILPWGKDVNVKNAVKNAPFVIRYLEMKCMSK 298
Query: 296 RKEERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVH 355
E+ GL DLG+VV E K+V +E D RY E+E+ G TG+D
Sbjct: 299 SGGEKKGLESTEFDLGEVVGEYFSKNV---VEDSLECEDLRYFELEDAIGFDKTGIDEAD 355
Query: 356 KTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKV 415
K QLSHECL+M+Y +F + G+ +EES + G K E+ A +WW GKSELSKK+
Sbjct: 356 KLQLSHECLSMVYDKFLMDGGCGRYMEESGKVLGRKRERELEIQA-TEWWNGKSELSKKL 414
Query: 416 LLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFL 475
LLK++LEKD+G VMPPSFVNGC ++RRAKINAAK+RID+IMNP +G V +
Sbjct: 415 LLKQLLEKDIGFSVMPPSFVNGCTTIKKRRAKINAAKLRIDRIMNPWNTDSGS-GKVCTV 473
Query: 476 ESVHTRKRKRKP-VAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM 530
E H RKRKRK V +IDWED +IETLLLHQVKEEEIE G+YNTL+DLHVFNSG M
Sbjct: 474 EGAHDRKRKRKSLVKDIDWEDFVIETLLLHQVKEEEIEKGYYNTLMDLHVFNSGTM 529
>gi|449462673|ref|XP_004149065.1| PREDICTED: uncharacterized protein LOC101208099 [Cucumis sativus]
gi|449509052|ref|XP_004163479.1| PREDICTED: uncharacterized protein LOC101223951 [Cucumis sativus]
Length = 525
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/531 (51%), Positives = 371/531 (69%), Gaps = 13/531 (2%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C +C S+++ R+D+SG+ IC SCG+VQ FDNYDAQL G +GP G +V VGT+G+GS LNY
Sbjct: 5 CKNCHSRSIFRDDVSGNQICSSCGIVQEFDNYDAQLGGINGPQGTFVRVGTSGSGSVLNY 64
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K+KKIYE+ K+I+++TF+L + +S ++ ++ IT+GE+GLGDWFPIL+GAC+YV MR
Sbjct: 65 KDKKIYEAQKVIEDITFRLGFSASKSNDVRILVSTITEGEYGLGDWFPILVGACAYVSMR 124
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK---LPEVDIVSMFERVIRNSRLQG 179
D + L +SEVAS + CD++ELGRM+ RVVEFL+L+ P DIV ER RNS
Sbjct: 125 KDSRPLSMSEVASAVECDLHELGRMVMRVVEFLDLRGSEFPVFDIVGSLERAARNS--PS 182
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
F+ L+ +L+R+ KQG+ LL CA+KWFLTTGR+P+P+V AVLV V +LN V V IENV
Sbjct: 183 FSRLEADILERIVKQGIFLLQCAMKWFLTTGRQPLPMVAAVLVLVSKLNEVDVSIENVGM 242
Query: 240 EVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEE 299
EVH V TC+KRY+ELLEALV+V + LPWGKD+T KN++KNAPFV+ YME+KSM K +
Sbjct: 243 EVHANVSTCKKRYRELLEALVEVGKKLPWGKDITTKNIVKNAPFVIQYMELKSMSKASGK 302
Query: 300 RDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKTQL 359
L IDL VSECL+K++EY E +E D +Y E++ + D ++ +
Sbjct: 303 GKDLENVEIDLQSAVSECLRKELEYESEVYNLEDDSQYFELQRSRWQDESNRDNGNRLNI 362
Query: 360 SHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVLLKK 419
SHECL++IY +F +E+ + + ++G K ++ +WW GKSELSKK+LL++
Sbjct: 363 SHECLSLIYNKFLDEMAELRSSGGINEVYGTKQGRKTGFYSSTEWWEGKSELSKKLLLQQ 422
Query: 420 ILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLESVH 479
+LE D+G +PPSFV+ C ERR+ K+NAAK RI +IM+PS A DV+
Sbjct: 423 LLETDIGSQGIPPSFVSSCNAYERRKEKVNAAKKRIQRIMHPSTAPADDVN--------I 474
Query: 480 TRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM 530
+KRKRK I+WED+IIETLLLH V+EEEIE GHY LLDL+VF S
Sbjct: 475 KKKRKRKGADVIEWEDIIIETLLLHGVQEEEIEKGHYKVLLDLYVFTSSTF 525
>gi|357448657|ref|XP_003594604.1| hypothetical protein MTR_2g031410 [Medicago truncatula]
gi|355483652|gb|AES64855.1| hypothetical protein MTR_2g031410 [Medicago truncatula]
Length = 532
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/536 (49%), Positives = 376/536 (70%), Gaps = 18/536 (3%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C +C + TR+D +G C SCG Q FD ++ G +GP G ++H+GT+G+G+ +Y
Sbjct: 7 CINCSKTSFTRDDETGGSFCSSCGAEQHFDQFETYTIGINGPQGTFIHIGTSGSGTIYSY 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
K++K++ + I++ T KL L+ ++ I+I MI ITDGEFG GDWF +LIGAC YVVMR
Sbjct: 67 KDRKLFSARNSIEQFTIKLGLSSKK-IEINTMISDITDGEFGQGDWFQVLIGACCYVVMR 125
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK---LPEVDIVSMFERVIRNSRLQG 179
D+++L ++EVA+ + CDV+ELG+M+ RVV++L+L+ P+ DIV + +R + + R
Sbjct: 126 RDERALSMNEVANAVGCDVFELGKMVIRVVDYLDLRGSDFPDFDIVHLLKRSVDSCRC-- 183
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
F +D S++DRM+KQGV LL CAVK FL+TGRRP+P+VVAVLV V E+NGV +++E++AK
Sbjct: 184 FREVDRSLVDRMKKQGVFLLQCAVKLFLSTGRRPLPLVVAVLVLVAEINGVDIRLEDLAK 243
Query: 240 EVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEE 299
EVH V TCR RY+ELLE LV VAQ LPWGKD+T KN++KNAPFV+ YME KSM K E+
Sbjct: 244 EVHAIVSTCRTRYRELLETLVNVAQVLPWGKDITKKNIIKNAPFVIQYMEKKSMSKPVEK 303
Query: 300 RDGLNCGGIDLGDVVSECLKKD--VEYRIEGGGVESDPRYLEVEERSGLALTGVDCVHKT 357
R ++ G+DL DVV ECL ++ EY ++G D +Y ++ S G+ +
Sbjct: 304 RKDVDQTGLDLADVVDECLTQEGQYEYGVDGLIHRKDSQYFSLQ--SNCDREGIVDDERL 361
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKSELSKKVLL 417
Q+S ECL+++Y +F NE D S V+ R EL +++WW +SELS+K++L
Sbjct: 362 QISPECLSLMYDKFLNENRDAM----SSRSANVQKRKRLELD-FQEWWNEESELSRKLIL 416
Query: 418 KKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNVYFLES 477
K++LEKD+G++ MPPSFVNG + + RR KINAAK RI +I +P + GD N+ L+S
Sbjct: 417 KELLEKDIGVETMPPSFVNGQLKCKMRREKINAAKKRIKRITHPLHSDLGDTANLGILDS 476
Query: 478 VHT-RKRKRKPVA--EIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSGIM 530
T RK+KR+ +A IDWEDLIIETL+LHQVK+EEIE GHYNTLL L+VFNSG++
Sbjct: 477 TCTERKKKRRGMAVDGIDWEDLIIETLVLHQVKDEEIEKGHYNTLLGLYVFNSGVV 532
>gi|297802394|ref|XP_002869081.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297314917|gb|EFH45340.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 530
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/539 (45%), Positives = 346/539 (64%), Gaps = 22/539 (4%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M C C R++++G+ C CG + +DNY+A L GP G ++ VGT G GS L
Sbjct: 1 MRCKGCNRSNFVRDEVTGNTHCGGCGTSREYDNYEAHLGPIGGPQGTFIRVGTIGIGSVL 60
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVV 120
YKEKKIYE+N LI+ +T +LDL G ++ IK+MI ITDGEFG G+WFPILIGAC Y V
Sbjct: 61 AYKEKKIYEANNLIEAITERLDL-GYKTEAIKSMIYYITDGEFGQGEWFPILIGACCYAV 119
Query: 121 MRLDDKS-LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+R + K L + E+A + CD+++LG ++ RVV+ L+L+ E+D+V +F + S
Sbjct: 120 VRKEGKGVLSMEEIACQVGCDLHQLGPVVKRVVDHLDLEFREIDLVGLFTKTATKS--PR 177
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
T++ +R+ KQG L+NCA+KWFL+TGRRPMP+VVAVL FV ++NGV VKI+++AK
Sbjct: 178 LTDVGREKKERITKQGTFLMNCALKWFLSTGRRPMPLVVAVLAFVAQVNGVKVKIDDLAK 237
Query: 240 EVHCTVVTCRKRYKELLEALVKVAQ--ALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRK 297
+ ++ TC+ RYKEL E LVKVA+ LPW KDVTVKNV+K++ + ME KS +KRK
Sbjct: 238 DARVSLTTCKTRYKELSEKLVKVAEEVGLPWAKDVTVKNVVKHSGTLFGLMETKSRKKRK 297
Query: 298 --EERDGLNCGGIDLGDVVSECLKKDVEY----RIEGGGVESDPRYLEVEERSGLALTGV 351
+ + G + D+V +CL K+ + + ++ RY +V L+L
Sbjct: 298 LGTGNELVRTDGFCVEDIVRDCLSKESMFCYDDGDDDDRQDTMSRYFDVGGERQLSL--- 354
Query: 352 DCVHKTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGV--KGRGGYELHAYRDWWCGKS 409
C + +S + L+ Y F + + G L + S+ + + R E+ + WW GKS
Sbjct: 355 -CNNDGNISEKQLSTKYNEFVDRVRGGTLAKRSQGNNKSMWQRRSVSEMFSSEYWWKGKS 413
Query: 410 ELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDV 469
ELS++VLLK +LEKDVGLD +PPS++ GC+ ERRR KI AAK+RI I +PS +
Sbjct: 414 ELSRRVLLKDLLEKDVGLDALPPSYIKGCVAVERRREKIKAAKLRIKTIQHPSGIVS--- 470
Query: 470 DNVYFLESVHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSG 528
+ LE H+ K+KRK +EIDWEDL+I+TL+LH V EEEIE GHY TL++LHVF+SG
Sbjct: 471 EGALSLELEHS-KKKRKKGSEIDWEDLVIQTLVLHNVNEEEIEKGHYKTLVELHVFDSG 528
>gi|15237034|ref|NP_195279.1| zinc ion binding protein [Arabidopsis thaliana]
gi|3367572|emb|CAA20024.1| putative protein [Arabidopsis thaliana]
gi|7270505|emb|CAB80270.1| putative protein [Arabidopsis thaliana]
gi|332661128|gb|AEE86528.1| zinc ion binding protein [Arabidopsis thaliana]
Length = 527
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 257/536 (47%), Positives = 357/536 (66%), Gaps = 19/536 (3%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M C C R++ +G+ C CG ++ +DNY+AQL G GP G Y+ VGT G GS L
Sbjct: 1 MRCKRCNGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVL 60
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVV 120
+YK+KKIYE+N LI+E T +L+L G ++ IK+MI K+TDGEFG G+WFPILIGAC Y V
Sbjct: 61 DYKDKKIYEANNLIEETTERLNL-GNKTEVIKSMISKLTDGEFGQGEWFPILIGACCYAV 119
Query: 121 MRLDDKS-LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+R + K L + EVA + CD+++LG MI RVV+ L+L+L E D+V +F + + NS
Sbjct: 120 VREEGKGVLSMEEVAYEVGCDLHQLGPMIKRVVDHLDLELREFDLVGLFTKTVTNS--PR 177
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
T++D +++ KQG L+NCA+KWFL+TGRRPMP+VVAVL FVV++NGV VKI+++AK
Sbjct: 178 LTDVDRDKKEKIIKQGTFLMNCALKWFLSTGRRPMPLVVAVLAFVVQVNGVKVKIDDLAK 237
Query: 240 EVHCTVVTCRKRYKELLEALVKVAQ--ALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRK 297
+ ++ TC+ RYKEL E LVKVA+ LPW KDVTVKNVLK++ + ME KSM+KRK
Sbjct: 238 DASVSLTTCKTRYKELSEKLVKVAEEVGLPWAKDVTVKNVLKHSGTLFALMEAKSMKKRK 297
Query: 298 E--ERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESD-PRYLEVEERSGLALTGVDCV 354
+ ++ + G + D+V +CL K+ Y + + RY +VE L+L C
Sbjct: 298 QGTGKELVRTDGFCVEDLVMDCLSKESMYCYDDDARQDTMSRYFDVEGERQLSL----CN 353
Query: 355 HKTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGV--KGRGGYELHAYRDWWCGKSELS 412
+ +S L+ Y F + + G L + S+ + R + + + +WW GKSELS
Sbjct: 354 YDDNISENQLSTKYNEFEDRVCGGTLAKRSQGSSQSMWQRRSVFGMVSTENWWKGKSELS 413
Query: 413 KKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDVDNV 472
K++LLK +LEKDVGL+ +PPS++ GC+ ERRR KI AAK+RI+ I +PS + +
Sbjct: 414 KRLLLKDLLEKDVGLEALPPSYIKGCVAVERRREKIKAAKLRINAIQHPSDNVS---EGA 470
Query: 473 YFLESVHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSG 528
LE H+ K+KRK +EIDWEDL+I+TL+LH V EEEIE GHY TLLDLHVFNSG
Sbjct: 471 LSLELEHS-KKKRKKGSEIDWEDLVIQTLVLHNVNEEEIEKGHYKTLLDLHVFNSG 525
>gi|42761383|dbj|BAD11651.1| unknown protein [Oryza sativa Japonica Group]
Length = 573
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 178/587 (30%), Positives = 273/587 (46%), Gaps = 91/587 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--GIYVHVGTAGT--GS 58
C SCG + + +G L+C SCG + D+ ++ + T G+Y ++ S
Sbjct: 5 CWSCGEGAVVADPDTGVLVCTSCGRIH--DSGSSEFVHQSICTDNGVYDLRASSFVYHQS 62
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL--GDWFPILIGAC 116
Y+++K+ I + +L L+ + + M T G + P L AC
Sbjct: 63 QSQYRDQKLSNGVVTIASIAARLGLSPTAADEALAMAKSATGGNLATQGSAFLPALASAC 122
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIVSMFERVIRNS 175
+++V R L ++E A C V L +++R+ L+L LP D + ER +R+S
Sbjct: 123 AFLVARSHRLPLSLAEAAETAFCSVASLADLVSRIASHLSLPPLPSFDYAAALERAVRSS 182
Query: 176 RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKI 234
+ + + + Q LL CA KW LTTGR P+P++ A++ F E NGV S+ +
Sbjct: 183 PSLSSAASERTEV--ILSQSRFLLRCASKWSLTTGRFPLPLIAALVAFAAEANGVTSITV 240
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVA-QALPWGKDVTVKNVLKNAPFVMNYMEMKSM 293
E++A+++ + T +RYKEL++ALV+VA + LPWG DV KN+L NAP ++ MEM+S
Sbjct: 241 EDIARDISARLHTSLRRYKELVDALVRVARELLPWGADVNAKNLLLNAPVLLRLMEMRSQ 300
Query: 294 EKRKEERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDC 353
E+ L D+ +V C D + + +YL+V + LA +D
Sbjct: 301 SDPSEQF--LESFAPDIAGIVQACSAVD----------DDESKYLQVAPQ--LASDDLDS 346
Query: 354 VHKTQ---------LSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----GGYELH- 399
+ Q +S ECL+ Y + +L +V G + GG EL
Sbjct: 347 NNSGQEGKELENFKISEECLSSAYQNVLKRL--AQLQRLGQVGKGANRKRQRIGGLELEP 404
Query: 400 ---AYRDWWCGKSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRID 456
+ D W +K ++L+ ++ DVG DV PPSF G + ++RRA+I AAK RID
Sbjct: 405 CIDSLDDGW------TKDMVLEDVVNIDVGFDVPPPSFAAGMKLQKKRRARIEAAKCRID 458
Query: 457 ------------------------------------KIMNPSRASTGDVDNVYFLESVHT 480
+I RA G++ + +
Sbjct: 459 AIRKGPVESENKLQAALRNEDACSPQKPARKKRGKKRIAGSDRAMNGELP-IEMPDGPGG 517
Query: 481 RKRKRK--PVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
K++RK P IDWED IIE LLLH EEEIE G Y LLDLHVF
Sbjct: 518 EKKRRKGAPSDGIDWEDCIIELLLLHGANEEEIEQGQYRRLLDLHVF 564
>gi|125562323|gb|EAZ07771.1| hypothetical protein OsI_30024 [Oryza sativa Indica Group]
Length = 573
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 177/586 (30%), Positives = 272/586 (46%), Gaps = 89/586 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--GIYVHVGTAGT--GS 58
C SCG + + +G L+C SCG + D+ ++ + T G+Y ++ S
Sbjct: 5 CWSCGEGAVVADPDTGVLVCTSCGRIH--DSGSSEFVHQSICTDNGVYDLRASSFVYHQS 62
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL--GDWFPILIGAC 116
Y+++K+ I + +L L+ + + M T G + P L AC
Sbjct: 63 QSQYRDQKLSNGVVTIASIAARLGLSPTAADEALAMAKSATGGNLATQGSAFLPALASAC 122
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIVSMFERVIRNS 175
+++V R L ++E A C V L +++R+ L+L LP D + ER +R+S
Sbjct: 123 AFLVARSHRLPLSLAEAAETAFCSVASLADLVSRIASHLSLPPLPSFDYAAALERAVRSS 182
Query: 176 RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKI 234
+ + + + Q LL CA KW LTTGR P+P++ A++ F E NGV S+ +
Sbjct: 183 PSLSSAASERTEV--ILSQSRFLLRCASKWSLTTGRFPLPLIAALVAFAAEANGVTSITV 240
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVA-QALPWGKDVTVKNVLKNAPFVMNYMEMKSM 293
E++A+++ + T +RYKEL++ALV+VA + LPWG DV KN+L NAP ++ MEM+S
Sbjct: 241 EDIARDISARLHTSLRRYKELVDALVRVARELLPWGADVNAKNLLLNAPVLLRLMEMRSQ 300
Query: 294 EKRKEERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDC 353
E+ L D+ +V C D + + +YL+V + LA +D
Sbjct: 301 SDPSEQF--LESFAPDIAGIVQACSAVD----------DDESKYLQVAPQ--LASDDLDS 346
Query: 354 VHKTQ---------LSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----GGYELH- 399
+ Q +S ECL+ Y + +L +V G + GG EL
Sbjct: 347 NNSGQEGKELENLKISEECLSSAYQNVLKRL--AQLQRLGQVGKGANRKRQRIGGLELEP 404
Query: 400 ---AYRDWWCGKSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRID 456
+ D W +K ++L+ I+ DVG DV PPSF G + ++RRA+I AAK RID
Sbjct: 405 CIDSLDDGW------TKDMVLEDIVNIDVGFDVPPPSFAAGMKLQKKRRARIEAAKCRID 458
Query: 457 KIM-------NPSRASTGDVDNVYFLESVHTRKRKRK----------------------- 486
I N +A+ + D + ++ K++
Sbjct: 459 AIRKGPVESENKLQAALRNEDACSPQKPARKKRGKKRIAGSDRAMNGELPIEMPDGPGGE 518
Query: 487 -------PVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
P IDWED IIE LLLH EEEIE G Y LLDLHVF
Sbjct: 519 KKRWKGAPSDGIDWEDCIIELLLLHGANEEEIEQGQYRRLLDLHVF 564
>gi|242082079|ref|XP_002445808.1| hypothetical protein SORBIDRAFT_07g026135 [Sorghum bicolor]
gi|241942158|gb|EES15303.1| hypothetical protein SORBIDRAFT_07g026135 [Sorghum bicolor]
Length = 583
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 182/595 (30%), Positives = 272/595 (45%), Gaps = 104/595 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALN- 61
C SCG + + SG+L+C SCGV+Q D +VH T L+
Sbjct: 5 CLSCGEGAVVADPDSGALVCTSCGVIQ------------DAGGAEFVHQSTFNDSGGLDL 52
Query: 62 -------------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL--G 106
Y+++K+ ++ I + +L L+ R+ + M TDG+
Sbjct: 53 RVSSLVRNASDSAYRDQKLAVASAGITSMATRLGLSPSRAEEALRMAKSATDGQLATPGS 112
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIV 165
+ P L AC+ +V R L ++E A C V LG +++RV L+L LP D
Sbjct: 113 AFLPALAAACTLLVARSHRLPLSLAEAAEAAFCSVPALGDLVSRVAAQLSLPPLPCFDYS 172
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+ +R + S + D + Q L CA KW LTTGR P+P+V A+L F
Sbjct: 173 AALDRAVHLS--PSLSAAGAYKTDAILAQARFLFRCASKWSLTTGRFPLPLVAALLAFSA 230
Query: 226 ELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQAL-PWGKDVTVKNVLKNAPF 283
E+NGV S+ +E++A+++ + T +RYKEL++ALV VA+ L PWG DV KN+L NAP
Sbjct: 231 EVNGVTSLSLEDIARDISAGLRTSIRRYKELVDALVHVARHLLPWGADVNAKNLLLNAPV 290
Query: 284 VMNYMEMKSMEKRKEERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEER 343
++ MEM+S EE L ++ +V K D + + +YL++
Sbjct: 291 LLRLMEMRSQSDPSEEF--LESFAPNIAAIVQAYSKVD----------DDESKYLQITPV 338
Query: 344 SGL-----ALTGVDCVHKTQ-LSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR---- 393
S L D + Q +S + L+ Y N + +L + +V G R
Sbjct: 339 SADDFDFDNLEPEDKEFENQNISEKGLSDAYQNVLNRL--AQLQKLGKVGKGADRRKRLK 396
Query: 394 GGYELHAYRDW----WCGKSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKIN 449
GG EL D W K +LL+ +++ D+G D PPSF G + + RRA+I
Sbjct: 397 GGLELEPCMDAVNVGW------KKNMLLEDVVDIDIGYDAPPPSFTAGMELQKERRARIE 450
Query: 450 AAKIRIDKI--------------------------MNPSRASTG-----DVDNVYFLES- 477
AAK RID I +R S G D D++ ++
Sbjct: 451 AAKQRIDAIRKAPAAPAAKANNSEDVVSNEYAPPPQKLTRKSRGGKKLDDTDHILLSDNM 510
Query: 478 -----VHTRKRKRKPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNS 527
V ++R+R IDWED IIE LLLH E+EIE G Y LL+LHVF++
Sbjct: 511 ADSSGVRKKRRRRGSCDGIDWEDCIIELLLLHGANEDEIEQGQYRRLLELHVFSA 565
>gi|255585421|ref|XP_002533405.1| hypothetical protein RCOM_0069140 [Ricinus communis]
gi|223526750|gb|EEF28978.1| hypothetical protein RCOM_0069140 [Ricinus communis]
Length = 193
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/180 (62%), Positives = 138/180 (76%), Gaps = 2/180 (1%)
Query: 350 GVDCVHKTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGRGGYELHAYRDWWCGKS 409
G + ++K QLSHECL+MIY +F NE GK EE E + K + +EL A DWW GKS
Sbjct: 2 GDNGMNKLQLSHECLSMIYNKFLNEASCGKYREEIERAYRRKSKRAFELFA-TDWWNGKS 60
Query: 410 ELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRIDKIMNPSRASTGDV 469
ELSKK+ LK+ILEKDVGLD+M SFVNG +V ERRRAKINAAK+RI++IM+P A +GD
Sbjct: 61 ELSKKIFLKQILEKDVGLDLMLSSFVNGRVVVERRRAKINAAKLRIERIMHPWSADSGDC 120
Query: 470 DNVYFLESVHTRKRKRKPVAE-IDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNSG 528
++ L+ +HT KRKRK A+ + W+D +IETLLLHQVKEEEIE GHYNTLLDLHVFNSG
Sbjct: 121 SDIDILQDLHTNKRKRKISAKGVVWKDFVIETLLLHQVKEEEIEKGHYNTLLDLHVFNSG 180
>gi|413921653|gb|AFW61585.1| hypothetical protein ZEAMMB73_495570 [Zea mays]
Length = 562
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 261/582 (44%), Gaps = 86/582 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALN- 61
C SCG + + SG L+C SCG++Q D +VH T L+
Sbjct: 5 CLSCGEGAVVADADSGVLVCTSCGIIQ------------DAGGAEFVHQSTFNESGGLDR 52
Query: 62 -------------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
Y+++K+ + I + +L L+ R+ + M TDG+
Sbjct: 53 RVSSLVRNDSDSAYRDQKLAIATAGITSIATRLGLSHTRAEEALRMAKSATDGQLATPGS 112
Query: 109 FPILIGACSYVVMRLDDKSLPIS--EVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIV 165
+ A + ++ LP+S E A C L +++RV L+L LP D
Sbjct: 113 AFLPALAAACALLVARSHRLPLSLAEAAEAAFCSAPALADLVSRVTAQLSLPPLPCFDYT 172
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+ +R + S D++ D + Q L CA KW LTTGR P+P+V A+L F
Sbjct: 173 AALDRAVHLSTSLNAAAPDKT--DAILAQARFLFRCASKWSLTTGRFPLPLVAALLAFSA 230
Query: 226 ELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA-QALPWGKDVTVKNVLKNAPF 283
E+NGV SV +E++A+++ + T RYKEL++ALV VA LPWG DV KN+L NAP
Sbjct: 231 EVNGVTSVSLEDIARDISAGLRTSLLRYKELVDALVHVAGHLLPWGADVNAKNLLLNAPV 290
Query: 284 VMNYMEMKSMEKRKEERDGLNCGGIDLGDVVSECLKKDVE-----YRIEGGGVESDPRYL 338
++ MEM+S EE L ++ +V K D E + G + D L
Sbjct: 291 LLRLMEMRSQSDPSEEF--LMSCAPNIAAIVQANSKVDDEVSKYLHITPVGSDDFDFDNL 348
Query: 339 EVEERSGLALTGVDCVHKTQLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----G 394
E EE+ +S + L+ Y N + +L + +V G R G
Sbjct: 349 EPEEKE---------FENQNISEKGLSDAYQNVLNRL--AQLQKLGKVGKGTDRRKRLKG 397
Query: 395 GYELHAYRDWWCGKSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIR 454
G EL D + K +LL+ +++ DVG D PPSF G + ++RRA+I AAK R
Sbjct: 398 GLELEPCMDTV--NNGWRKDMLLEDVVDIDVGYDAPPPSFTAGLELQKQRRARIEAAKQR 455
Query: 455 IDK------------------------IMNPSRASTGDVDNVYFLESV-----HTRKRKR 485
ID + N D+D++ +++ +KR+R
Sbjct: 456 IDATRKAPAAPAAKANNSEDVVRKKLTMKNRGGKKKDDIDHILPSDNMTGCSGARKKRRR 515
Query: 486 KPVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVFNS 527
IDWED IIE LLLH E EIE G Y LL+LHVF++
Sbjct: 516 GSCDSIDWEDCIIELLLLHGANEAEIEQGQYRRLLELHVFSA 557
>gi|222640926|gb|EEE69058.1| hypothetical protein OsJ_28063 [Oryza sativa Japonica Group]
Length = 549
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 171/587 (29%), Positives = 264/587 (44%), Gaps = 115/587 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--GIYVHVGTAGT--GS 58
C SCG + + +G L+C SCG + D+ ++ + T G+Y ++ S
Sbjct: 5 CWSCGEGAVVADPDTGVLVCTSCGRIH--DSGSSEFVHQSICTDNGVYDLRASSFVYHQS 62
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL--GDWFPILIGAC 116
Y+++K+ I + +L L+ + + M T G + P L AC
Sbjct: 63 QSQYRDQKLSNGVVTIASIAARLGLSPTAADEALAMAKSATGGNLATQGSAFLPALASAC 122
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIVSMFERVIRNS 175
+++V R L ++E A C V L +++R+ L+L LP D + E
Sbjct: 123 AFLVARSHRLPLSLAEAAETAFCSVASLADLVSRIASHLSLPPLPSFDYAAALEP----- 177
Query: 176 RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKI 234
++ +L A+ W LTTGR P+P++ A++ F E NGV S+ +
Sbjct: 178 -----------------RRALL----ALAWSLTTGRFPLPLIAALVAFAAEANGVTSITV 216
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVA-QALPWGKDVTVKNVLKNAPFVMNYMEMKSM 293
E++A+++ + T +RYKEL++ALV+VA + LPWG DV KN+L NAP ++ MEM+S
Sbjct: 217 EDIARDISARLHTSLRRYKELVDALVRVARELLPWGADVNAKNLLLNAPVLLRLMEMRSQ 276
Query: 294 EKRKEERDGLNCGGIDLGDVVSECLKKDVEYRIEGGGVESDPRYLEVEERSGLALTGVDC 353
E+ L D+ +V C D + + +YL+V + LA +D
Sbjct: 277 SDPSEQF--LESFAPDIAGIVQACSAVD----------DDESKYLQVAPQ--LASDDLDS 322
Query: 354 VHKTQ---------LSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----GGYELH- 399
+ Q +S ECL+ Y + +L +V G + GG EL
Sbjct: 323 NNSGQEGKELENFKISEECLSSAYQNVLKRL--AQLQRLGQVGKGANRKRQRIGGLELEP 380
Query: 400 ---AYRDWWCGKSELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRID 456
+ D W +K ++L+ ++ DVG DV PPSF G + ++RRA+I AAK RID
Sbjct: 381 CIDSLDDGW------TKDMVLEDVVNIDVGFDVPPPSFAAGMKLQKKRRARIEAAKCRID 434
Query: 457 ------------------------------------KIMNPSRASTGDVDNVYFLESVHT 480
+I RA G++ + +
Sbjct: 435 AIRKGPVESENKLQAALRNEDACSPQKPARKKRGKKRIAGSDRAMNGELP-IEMPDGPGG 493
Query: 481 RKRKRK--PVAEIDWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
K++RK P IDWED IIE LLLH EEEIE G Y LLDLHVF
Sbjct: 494 EKKRRKGAPSDGIDWEDCIIELLLLHGANEEEIEQGQYRRLLDLHVF 540
>gi|302791415|ref|XP_002977474.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
gi|300154844|gb|EFJ21478.1| hypothetical protein SELMODRAFT_417248 [Selaginella moellendorffii]
Length = 805
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 165/313 (52%), Gaps = 18/313 (5%)
Query: 3 CTSCG-SKTLTREDISGSLICVSCGVVQAFD----NYDAQLYGRDGPT-----GIYVHVG 52
C++CG + T+T + +SG C CGVV D ++ L G G T GI G
Sbjct: 330 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALAG 389
Query: 53 TA---GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G + Y KK ++ + I ++ L L + +++ M+D+ T+G++G G WF
Sbjct: 390 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDRATNGDWGSGRWF 449
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFE 169
L+GAC+YVV+R L + EVA +C V ELGR++ ++V + LP+ D + E
Sbjct: 450 DALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMALPQEDPIVFLE 509
Query: 170 RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
R++ GF+ L ++ Q +LL WF++TGR +P A LV V + N
Sbjct: 510 RLVLTH--AGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALVIVADANR 567
Query: 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKD-VTVKNVLKNAPFVMNYM 288
+ + +E V+ E+H V T KR++E+ EALV + PW K VT KN+ + F++ Y+
Sbjct: 568 IEIGLEEVSSELHSPVATSMKRFREIQEALVSTMKTFPWCKTVVTTKNISCHLCFMLRYL 627
Query: 289 E--MKSMEKRKEE 299
E +K +KR+ E
Sbjct: 628 ETSLKLGKKRRRE 640
>gi|302780755|ref|XP_002972152.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
gi|300160451|gb|EFJ27069.1| hypothetical protein SELMODRAFT_412683 [Selaginella moellendorffii]
Length = 799
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 165/319 (51%), Gaps = 19/319 (5%)
Query: 3 CTSCG-SKTLTREDISGSLICVSCGVVQAFD----NYDAQLYGRDGPT-----GIYVHVG 52
C++CG + T+T + +SG C CGVV D ++ L G G T GI G
Sbjct: 332 CSACGRAGTVTTDPLSGLFCCCECGVVVDDDALGSDHQVGLVGERGGTLVAGEGIGALPG 391
Query: 53 TA---GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G + Y KK ++ + I ++ L L + +++ M+D+ T+G++G G WF
Sbjct: 392 KRFLYRNGGSDQYFAKKKQDALRRIRDVAAALRLQPNDADEVEAMVDRATNGDWGSGRWF 451
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFE 169
L+GAC+YVV+R L + EVA +C V ELGR++ ++V + LP+ D + E
Sbjct: 452 DALVGACAYVVVRNHRLPLTLVEVAYASDCGVRELGRVLGKLVREFAMALPQEDPIVFLE 511
Query: 170 RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
R++ GF+ L ++ Q +LL WF++TGR +P A LV V + N
Sbjct: 512 RLVLTH--AGFSKLSRDAARKIIGQCRVLLEWMATWFVSTGRHALPAAAAALVIVADANR 569
Query: 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKD-VTVKNVLKNAPFVMNYM 288
+ + +E V+ E+H V T KR++E+ EALV + PW K VT KN+ + F++ Y+
Sbjct: 570 IEIGLEEVSSELHSPVATSMKRFREIQEALVSTMKTFPWCKTVVTTKNISCHLCFMLRYL 629
Query: 289 EMK---SMEKRKEERDGLN 304
E +R+E+ ++
Sbjct: 630 ETSLKLGKTRRREDSSAID 648
>gi|308805164|ref|XP_003079894.1| transcription factor IIIB (ISS) [Ostreococcus tauri]
gi|116058351|emb|CAL53540.1| transcription factor IIIB (ISS) [Ostreococcus tauri]
Length = 601
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 40/337 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPT-GIYVHVGTAGTGSAL 60
C +CG + E GS IC SCG V L + DG G ++ G A G+ L
Sbjct: 17 CPNCGRDAIKLEPALGSEICQSCGAVYRASVLQTTLNWTEDGAADGTFLQDG-AHVGAHL 75
Query: 61 ----------------------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI 98
+ + +Y K ++ L L ++K+++ +
Sbjct: 76 AAARAQMVSMPGASHVTRHMFRDRESTNLYHIAKSVEHTGALLKLNKDIIAEVKDLVTRA 135
Query: 99 TDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158
+DG++G G W L GAC Y V R ++ + + EVA + +V+ LGR+ ++ E LK
Sbjct: 136 SDGKWGQGLWTSQLTGACVYSVCRQNNLPVSMREVAEACSVNVFTLGRVFHKLQELHGLK 195
Query: 159 LPEVDIVSMFERVI-----------RNSRLQ---GFTNLDESMLDRMRKQGVLLLNCAVK 204
+P +D + R + +NS +Q G M +R VLL A
Sbjct: 196 MPPLDPENYVARAVAALPELTQISNKNSNVQPQRGSMTRSVMMAPTVRDAKVLL-QFAFS 254
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264
L GR P+ +V AV++ V L+GV + +E A V+ RKR KELL ++ A+
Sbjct: 255 RGLLIGRDPIVIVAAVVIVVARLHGVRISVEKAAAASRVQSVSVRKRLKELLGEIISFAK 314
Query: 265 ALPWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEERD 301
PWG+D+++K + P +++ K K D
Sbjct: 315 KFPWGEDMSIKRLDDYLPIAFKFIQTAEANKEKTTLD 351
>gi|42761384|dbj|BAD11652.1| unknown protein [Oryza sativa Japonica Group]
Length = 414
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 95/214 (44%), Gaps = 55/214 (25%)
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----GGYELH----AYRDWWCGKS 409
++S ECL+ Y + +L +V G + GG EL + D W
Sbjct: 201 KISEECLSSAYQNVLKRL--AQLQRLGQVGKGANRKRQRIGGLELEPCIDSLDDGW---- 254
Query: 410 ELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRID------------- 456
+K ++L+ ++ DVG DV PPSF G + ++RRA+I AAK RID
Sbjct: 255 --TKDMVLEDVVNIDVGFDVPPPSFAAGMKLQKKRRARIEAAKCRIDAIRKGPVESENKL 312
Query: 457 -----------------------KIMNPSRASTGDVDNVYFLESVHTRKRKRK--PVAEI 491
+I RA G++ + + K++RK P I
Sbjct: 313 QAALRNEDACSPQKPARKKRGKKRIAGSDRAMNGELP-IEMPDGPGGEKKRRKGAPSDGI 371
Query: 492 DWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
DWED IIE LLLH EEEIE G Y LLDLHVF
Sbjct: 372 DWEDCIIELLLLHGANEEEIEQGQYRRLLDLHVF 405
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 10/167 (5%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--GIYVHVGTAGT--GS 58
C SCG + + +G L+C SCG + D+ ++ + T G+Y ++ S
Sbjct: 5 CWSCGEGAVVADPDTGVLVCTSCGRIH--DSGSSEFVHQSICTDNGVYDLRASSFVYHQS 62
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL-GDWF-PILIGAC 116
Y+++K+ I + +L L+ + + M T G G F P L AC
Sbjct: 63 QSQYRDQKLSNGVVTIASIAARLGLSPTAADEALAMAKSATGGNLATQGSAFLPALASAC 122
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD 163
+++V R L ++E A C V L +++R+ L+ LP VD
Sbjct: 123 AFLVARSHRLPLSLAEAAETAFCSVASLADLVSRIASHLS--LPPVD 167
>gi|115477489|ref|NP_001062340.1| Os08g0532500 [Oryza sativa Japonica Group]
gi|113624309|dbj|BAF24254.1| Os08g0532500, partial [Oryza sativa Japonica Group]
Length = 446
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 95/214 (44%), Gaps = 55/214 (25%)
Query: 358 QLSHECLAMIYTRFANEIDDGKLLEESEVIHGVKGR----GGYELH----AYRDWWCGKS 409
++S ECL+ Y + +L +V G + GG EL + D W
Sbjct: 233 KISEECLSSAYQNVLKRL--AQLQRLGQVGKGANRKRQRIGGLELEPCIDSLDDGW---- 286
Query: 410 ELSKKVLLKKILEKDVGLDVMPPSFVNGCMVNERRRAKINAAKIRID------------- 456
+K ++L+ ++ DVG DV PPSF G + ++RRA+I AAK RID
Sbjct: 287 --TKDMVLEDVVNIDVGFDVPPPSFAAGMKLQKKRRARIEAAKCRIDAIRKGPVESENKL 344
Query: 457 -----------------------KIMNPSRASTGDVDNVYFLESVHTRKRKRK--PVAEI 491
+I RA G++ + + K++RK P I
Sbjct: 345 QAALRNEDACSPQKPARKKRGKKRIAGSDRAMNGELP-IEMPDGPGGEKKRRKGAPSDGI 403
Query: 492 DWEDLIIETLLLHQVKEEEIEAGHYNTLLDLHVF 525
DWED IIE LLLH EEEIE G Y LLDLHVF
Sbjct: 404 DWEDCIIELLLLHGANEEEIEQGQYRRLLDLHVF 437
>gi|388583139|gb|EIM23442.1| BRF1-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 806
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 15/261 (5%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT----AGT 56
PC CGS + + SGS C +CG+V N A + + +G GT T
Sbjct: 4 QPCRDCGSLNIDHDSSSGSSYCANCGIVFEESNIVADVGFTESSSGQAHVTGTLVAHDAT 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGAC 116
G++ ++K I E + + +L L ++ + + + F G ++ AC
Sbjct: 64 GTSRESRDKTIQEGKRRVRQLAAALRISEAVAESGERIYTLAVQNNFIRGRKAVYIVSAC 123
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSR 176
Y RL S + + + L +V+ LG R+VE L+LKLPE+D S++
Sbjct: 124 LYAACRLQKDSHMLIDFSDFLQINVFALGTTYLRLVERLDLKLPEMD-PSIY-------- 174
Query: 177 LQGFTNLDE--SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
+Q F +L E R+ L + F++ GRRP + A L+ +N +
Sbjct: 175 IQRFASLLEFGQETQRVASDATRLCRRFDEDFISHGRRPAGICGAALLLAARMNNFRRSV 234
Query: 235 ENVAKEVHCTVVTCRKRYKEL 255
E + + V VT +KR E
Sbjct: 235 EEIVQVVKIADVTVQKRLDEF 255
>gi|290974267|ref|XP_002669867.1| predicted protein [Naegleria gruberi]
gi|284083420|gb|EFC37123.1| predicted protein [Naegleria gruberi]
Length = 738
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 103/192 (53%), Gaps = 15/192 (7%)
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
W +I YVV R + + + +++ V ++ELGR + + N+++ +D+ ++
Sbjct: 316 WMDGVIAGALYVVCRREKLPITLLDLSEVTGYSIFELGRKYKEICKTFNIQVDPLDLETL 375
Query: 168 FERVI---------RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
+R+ N ++ T D ++ RMR+ ++ A+K L +GRRP+ +V
Sbjct: 376 CDRMTNEFSDCFTDENGQVNIKTKTDINL--RMRR----IIRVAMKECLDSGRRPIALVA 429
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVL 278
A L+ ++ + +K+ VA+ H T R+R+ EL + L+ +++ LPW ++T+K +
Sbjct: 430 AALLLALQSCSIDMKLSEVARSTHVGEATIRERFNELKQLLMNLSKQLPWAHEITLKTLP 489
Query: 279 KNAPFVMNYMEM 290
++ PF+++ +E
Sbjct: 490 RHLPFILDVVEQ 501
>gi|320169881|gb|EFW46780.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 508
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 19/203 (9%)
Query: 88 SIQIKNMIDKI----TDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYE 143
S+Q+K +++ G FG + AC YVV R ++A +V+
Sbjct: 126 SVQVKEVLEYFRRVRAAGPFG--GTLDCIAAACVYVVCRAHSIPATFLQLAEAAQVNVFT 183
Query: 144 LGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAV 203
L R R+V+ L L LP V+ V++ E V++ L + + + + LL
Sbjct: 184 LQRTFGRLVQHLKLSLPAVNEVALVESVVK-----AVPELSHEAVPILSQYAICLLELGK 238
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKE------VHCTVVTCRKRYKELLE 257
+ ++++GRRP+P+ +A ++ + + ++ + VH + T R R +EL
Sbjct: 239 QSWVSSGRRPLPIALAATDLANQIYAQNENLPSILPQLCEKFGVH--INTARARARELRL 296
Query: 258 ALVKVAQALPWGKDVTVKNVLKN 280
L++ AQALPW ++T +NV+ +
Sbjct: 297 NLLQHAQALPWRANITERNVVAH 319
>gi|401396470|ref|XP_003879829.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
gi|325114237|emb|CBZ49794.1| hypothetical protein NCLIV_002820 [Neospora caninum Liverpool]
Length = 656
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 23/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGT-------- 53
C SCGS L + G +IC CG V++ D+ + G+ + VG
Sbjct: 29 CRSCGSAELEANESRGEIICCRCGTVLEDLTLVDSLQFAESSSGGVSM-VGQFVSSCSGA 87
Query: 54 -----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI-TDGEFGLGD 107
AG G + +E+ + I + +L L+ Q+ I + + + T F LG
Sbjct: 88 ARGLRAGVGGGTDSREQTLQRGFNNIQSIAERLRLSSQQHISSAHRLYLMATQRNFTLGR 147
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ AC Y + R + + + VL +V LG++ +++ L+L++P VD
Sbjct: 148 RSVLVASACLYAICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQVPHVDPSLF 207
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
ER +L T+ + + GV L+ + +++TGRRPM + A L+
Sbjct: 208 LERFACQMQLGDKTHT-------VAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARY 260
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + E++A V + T +R +E
Sbjct: 261 HNFQMNAEDIAHIVRVSGPTVNRRLQEF 288
>gi|320166408|gb|EFW43307.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 560
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPIS--EVASVLNCDVYELGRMITRVVEFLNLKLPEV 162
G + AC YVV R S+P + ++A +V+ L R R+V L L LP V
Sbjct: 197 FGGTLDCIAAACVYVVCR--SHSIPATFLQLAEAAQVNVFTLQRTFGRLVHHLKLSLPAV 254
Query: 163 DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ V++ E V+ Q L + + + + LL + ++++GRRP+P+ +A
Sbjct: 255 NEVALVESVV-----QAVPELSHEAVPILSQYAICLLELGKQSWVSSGRRPLPIALAATD 309
Query: 223 FVVELNGVSVKIENVAKE------VHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKN 276
++ + + ++ + VH + T R R +EL L++ AQALPW ++T +N
Sbjct: 310 LANQIYAQNENLPSILPQLCEKFGVH--INTARARARELRLNLLQHAQALPWRANITERN 367
Query: 277 VLKN 280
V+ +
Sbjct: 368 VVAH 371
>gi|391339520|ref|XP_003744096.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Metaseiulus occidentalis]
Length = 689
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C CG+K + + G +C CGVV +++ + G +G TGS
Sbjct: 7 CQYCGTKKIDVDRSRGDAVCTGCGVVLEDTLIVSEVQFEETAGGGSRAIGQMVTGSGGAR 66
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDG-----------EFGLGDWFP 110
+ Y +K ELT T + I + + D I + F +G
Sbjct: 67 IQGFRYGGSKAARELTIARVRTTMKLIADQLQLNDDIVESAMRLYEMALIRNFTVGRRRS 126
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
++ AC Y+ RL + SL + +++ V+ +VYELGR T++ + L + +P +D R
Sbjct: 127 HVLAACIYITCRLKESSLMLLDISDVVQVNVYELGRTYTKLAQELFITIPVLDPCIYVTR 186
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ L+G T+ ++ + LL + ++ GRRP + A L+ +NG
Sbjct: 187 YAQKLELEGDTH-------KVSLTALRLLQRMKRDWMAIGRRPSGLCGAALLVAARMNGY 239
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257
+ ++++ V+ + T RKR E E
Sbjct: 240 NRSVQDLVGIVNMSTSTIRKRLTEFAE 266
>gi|410904186|ref|XP_003965573.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Takifugu
rubripes]
Length = 447
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 47/312 (15%)
Query: 3 CTSCGSKTLTREDISGS--LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
C SCGS + +D+ L+CV CG V + + + +G GS +
Sbjct: 8 CRSCGSTNIIEDDLYAQTQLVCVDCGSVVSEGVLEKEPFG----------------GSVV 51
Query: 61 NYKEKKIYE--SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF--------- 109
+Y + + ++ + E ++ R++++ N I++++ F
Sbjct: 52 SYSQSTAVDKKPSRSLKECLQRVKAIC-RTLRVNNEIEELSQNIFNQAYQHRNYIRVSLQ 110
Query: 110 --PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
ILIG C R+ + + + + S+L+ DV LG + +V+ LN+++P V +
Sbjct: 111 KKEILIGCCVIASCRIFNWPITMGTIGSLLDTDVLHLGSIYQDMVKILNIEVPSVSFLDE 170
Query: 168 FERVIRNSRLQGF---TNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
E + ++ L E++ D M K+ V L+ A ++ TGRRP+P+++A
Sbjct: 171 IEGYCQEYKISAPHVREELAENVKD-MTKRTVALVELAADSWIVTGRRPVPIMMAATYLA 229
Query: 225 VE--------LNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPW-GKDVTVK 275
+ L+ VK +AK ++ KR E+ E L K+A +PW + V
Sbjct: 230 WQSLKPNKYRLSLTLVKFCQIAKVK--SLKPALKRVAEMKEVLCKLANEIPWLQQKVKPD 287
Query: 276 NVLKNAPFVMNY 287
NVL+ ++ Y
Sbjct: 288 NVLQQVEDILKY 299
>gi|156083907|ref|XP_001609437.1| transcription factor TFIIB subunit [Babesia bovis T2Bo]
gi|154796688|gb|EDO05869.1| transcription factor TFIIB subunit, putative [Babesia bovis]
Length = 519
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 110/270 (40%), Gaps = 31/270 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN------YDAQLYGRDGPTGIYVHVGTAGT 56
C CGS + G L+C +CG V +N Y G G +V G G
Sbjct: 9 CKYCGSDQIESCKQQGELVCRNCGAVLQENNVLEAVQYAENPAGNSTLIGRFVPTGGGGM 68
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN----MIDKIT-------DGEFGL 105
GS Y S++ +D+L + + QR+ N ++ K T F +
Sbjct: 69 GSLK-------YSSSQTLDQLVKRGEQNIQRTACHLNISSELVTKATRIYSLAVQRNFTM 121
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G + C Y R + + A VL V +G++ ++V L+L++P VD
Sbjct: 122 GRNNKHVACCCLYTACRRFKAPYLLIDFADVLQVPVKIIGQVFMKLVRMLHLEVPNVDPS 181
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
FER +L+ +D++ GV L+ + +L TGRRP + A LV
Sbjct: 182 IFFERFANELQLK-------DKVDQIITTGVRLIQAMRRDWLCTGRRPTGLCGAALVVAA 234
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++GV + E VA V + T KR E
Sbjct: 235 RIHGVPLNAEAVASVVRISHPTIMKRLSEF 264
>gi|428671958|gb|EKX72873.1| transcription factor IIIb subunit, putative [Babesia equi]
Length = 515
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 19/264 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFD------NYDAQLYGRDGPTGIYVHV----- 51
CT CGS+ L G L+C CG V + Y G G ++ V
Sbjct: 6 CTYCGSQDLESVKHLGELVCQDCGAVLQENTVLEDLQYSENRLGSSTLVGQFIPVSGIRP 65
Query: 52 GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPI 111
GT +GS L ++ + I+ + +L+L+ + + + + F +G
Sbjct: 66 GTLSSGS-LPSRDHVLKRGCDNIERIALRLNLSPEHINKAQAIYKLAVQRNFTMGRNNLH 124
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+ C Y V R + + + + +L V +G++ ++V L++ +P VD FER
Sbjct: 125 VASCCLYTVCRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHISVPNVDPSIFFERF 184
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
S+L N+ + + GV ++ + +L TGRRP + A LV +G+S
Sbjct: 185 A--SKLYLKDNIQKVI-----STGVRIIQAMNRDWLCTGRRPTGLCGAALVVAARFHGIS 237
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
+ E+VA V + T KR E
Sbjct: 238 LPAEDVAAVVRISHPTIMKRLSEF 261
>gi|255084225|ref|XP_002508687.1| cyclin-like protein [Micromonas sp. RCC299]
gi|226523964|gb|ACO69945.1| cyclin-like protein [Micromonas sp. RCC299]
Length = 753
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 23/190 (12%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD--GPTGIYVH-------- 50
M C +CG + + E+ G IC +CG V +Q+ + G G YVH
Sbjct: 5 MKCPACGKREIKHEEDLGCDICAACGHVINERGLTSQVQWTEDAGAMGTYVHEDRGGQLA 64
Query: 51 -------VGTAGTGSALN---YKEKKIYESNKLIDELTF---KLDLTGQRSIQIKNMIDK 97
+G G G+ + +++++ + + F +L L S K ++ K
Sbjct: 65 AARGALAIGPGGVGAHIAKQFFRDEEATHMENITKSVNFACGQLRLGKDASADAKALVVK 124
Query: 98 ITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL 157
DG +G G+W +L GAC Y R + + + +VA DV+ LGR+ R+ L
Sbjct: 125 ACDGRWGEGEWTTMLTGACVYAASRQNALPITVRDVAEACQLDVFALGRVYNRLKFLHEL 184
Query: 158 KLPEVDIVSM 167
K+P +D +
Sbjct: 185 KVPPLDPATF 194
>gi|389742730|gb|EIM83916.1| cyclin-like protein [Stereum hirsutum FP-91666 SS1]
Length = 687
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 116/271 (42%), Gaps = 23/271 (8%)
Query: 1 MP-CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAG 55
MP CT CG + + +G+ CV CG V + ++ + TG + VG
Sbjct: 1 MPVCTDCGGTVIEYDAAAGNGFCVQCGTVIEENTIVNEVSFGETSTGAAMVQGAFVGQGA 60
Query: 56 TGSALN----------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
T + + +E+ I +N+ I ++ L L+ S+ + + +F
Sbjct: 61 THARMGGPFGNRGNSESREQTIANANRRISQIASNLHLSETVSMSASRLYSLAVEHKFTK 120
Query: 106 GDWFPILIGACSYVVMRLD-DKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G ++ C YV R +SL + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 121 GRKAMNVVAVCLYVACRQKGTRSLMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDP 180
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R + L F DE+ R+ V L+ + ++T GRRP + A L+
Sbjct: 181 SHYISRF---AALLEFG--DET--SRVATDAVRLVQRFDRDWMTKGRRPAGICGACLLLA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N IE + + V T +KR E
Sbjct: 234 ARMNNFRRSIEEIVQVVKIADTTLKKRLDEF 264
>gi|315230585|ref|YP_004071021.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183613|gb|ADT83798.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 121/307 (39%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L + G ++C +CG V +AFD GR G P + +
Sbjct: 10 CPVCGSVRLIYDPERGEIVCTACGYVVAQNIIDSGPEWRAFDADQRVKRGRVGAPMTMMI 69
Query: 50 HVGTAGTGSALNYKEKKIY--ESNKLIDELTFKLDLTGQRSIQI-----KNMIDKITD-- 100
H G S +++K K I+ + + + ++L QR I++ +N+ +++
Sbjct: 70 H--DKGLSSTIDWKNKDIHGHDISGTMRAKMYRLR-KWQRRIRVSDAAERNLAFALSELD 126
Query: 101 ---GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ GL G + AC Y R+ + E+
Sbjct: 127 RMASQLGLPRNIKEMAAALYRKAVMERLIRGRSIEGVTAACLYAACRMAKVPRTLDEIEE 186
Query: 136 VLNCDVYELGRMITRVVEFLNLKL---PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
V D E+GR + L+L+L +D VS F + + +R +
Sbjct: 187 VARVDKKEIGRSYRFIARELHLRLTPTSPIDYVSRFADQL-------------GLSERTK 233
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A+K LT+GR PM V A L L G VA+ H T VT R RY
Sbjct: 234 NRAVKILQKAIKLGLTSGRGPMGVAAAALYIASVLEGEKKTQREVAEVAHVTEVTVRNRY 293
Query: 253 KELLEAL 259
KEL+E L
Sbjct: 294 KELVERL 300
>gi|300708839|ref|XP_002996591.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
gi|239605905|gb|EEQ82920.1| hypothetical protein NCER_100286 [Nosema ceranae BRL01]
Length = 282
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 55/279 (19%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M C++C S + + G + C +CG+V + + + D + + G +
Sbjct: 1 MVCSNCNSSDMATDSAQGVIYCTNCGMVHEENIIVSTISFSDN------GLKSTLNGKVI 54
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF----------- 109
N K++ + ID S IKN I I GLG F
Sbjct: 55 NIDSKQV--GTQYIDA-----------SFYIKNTISSIC-SNMGLGSNFLDCSYRYYRLL 100
Query: 110 ---------PIL--IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158
IL + AC Y+V R + + + ++ LN DV+++G+ T++VE LNL
Sbjct: 101 LPYNLSKGKSILYTLSACVYIVCREEKTPHLLIDFSNALNIDVFKIGKSFTKIVEVLNLN 160
Query: 159 LPEVDIVSMFERVI--RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPV 216
+P VD +R I N + Q L ++ RM + ++TTGRRP +
Sbjct: 161 IPNVDPTLYIQRYIVKLNLKNQKIPTLALRIMSRMSRD-----------WITTGRRPNNI 209
Query: 217 VVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A ++ + + VAK VH + +KR E+
Sbjct: 210 CGAAILIASRVYNEERSLSEVAKVVHVSEFILKKRLLEI 248
>gi|145348059|ref|XP_001418474.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578703|gb|ABO96767.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 233
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPT-GIYVHVGTAGTGSAL 60
C +CG + E GS IC +CGVV L + DG G ++ G A G+ L
Sbjct: 22 CPNCGKHEIKLEPALGSEICQACGVVYNASVLQTTLNWTEDGAADGTFLQDG-AHVGAHL 80
Query: 61 ----------------------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI 98
+ + +Y K ++ L L ++K+++ +
Sbjct: 81 AAARAQMVSMPGASHVTRNMFRDRESTNLYHIAKSVEHTGALLKLNKDIIAEVKDLVTRA 140
Query: 99 TDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158
+DG++G G W L GAC Y V R ++ + + EVA + +V+ LGR+ ++ E LK
Sbjct: 141 SDGKWGQGLWTSQLTGACVYSVCRQNNLPVSMREVAEACSVNVFTLGRVFHKLQELHGLK 200
Query: 159 LPEVDIVSMFERVI 172
+P +D + R +
Sbjct: 201 MPPLDPENYVARAV 214
>gi|401826311|ref|XP_003887249.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
gi|392998408|gb|AFM98268.1| putative transcription initiation factor TFIIIB [Encephalitozoon
hellem ATCC 50504]
Length = 395
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 65/282 (23%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP----TGIYVHVGTAGTG 57
C++C S + G++ C +CG+VQ + A L + +GP G V + + G
Sbjct: 4 CSNCSSSDFAEDTAQGAVYCTTCGMVQEENAIVASLNFNTEGPKATLNGQIVGIDSRNVG 63
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG--------DWF 109
+ +D S IKN I I GLG W+
Sbjct: 64 TGF-------------VDS-----------SYYIKNTISGIC-ASLGLGIDHVECSFRWY 98
Query: 110 PILI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+L+ AC Y+V R + + + ++ L+ DV+++G+ ++ L
Sbjct: 99 KLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITSML 158
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTNLDES--MLDRMRKQGVLLLNCAVKWFLTTGRRP 213
+++P +D R + R + L S ++ RM++ ++ GRRP
Sbjct: 159 GIEIPLIDPSLYMPRFVSRLRFESSEVLGLSLRLISRMKRD-----------WIVVGRRP 207
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ A L+ + G I +AK VH +V T KR KE+
Sbjct: 208 NNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEI 249
>gi|325192948|emb|CCA27332.1| transcription factor IIIB putative [Albugo laibachii Nc14]
Length = 531
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 22/273 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA-----QLYGRDGPTGIYVHV------ 51
C SC + DISG +CV+CG + +N + + G + G +V
Sbjct: 7 CPSCKCTQIEHVDISGEAVCVNCGTIVEINNIVSSVEFHETSGGNSVVGQFVSSQGFNAY 66
Query: 52 ----GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
T G N +EK + + I + L L + F G
Sbjct: 67 SKVSATNGRSYDSNSREKTLANCRRTITRVAGMLSLGSHYVDSAFRLYALALQRNFTRGR 126
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++I AC Y+V R + + + + L +VY LG + + L + LP VD
Sbjct: 127 KSEVVIAACLYIVCRRERSPHLLIDFSDALQWNVYVLGGVFLKFCNLLQIHLPLVDPSLY 186
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R RL+ T+ ++ G+ L+ + ++ TGRRP + A L+
Sbjct: 187 IHRFASQLRLKSKTHTIATI-------GLRLVASMKRDWIQTGRRPSGICGAALLIAARC 239
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEALV 260
V ++V V+ T R+R KE + +
Sbjct: 240 QSVPCSFQDVMDVVNIGEHTLRRRLKEFADTPI 272
>gi|375083122|ref|ZP_09730154.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
gi|374742208|gb|EHR78614.1| transcription initiation factor IIB [Thermococcus litoralis DSM
5473]
Length = 299
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 110/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G +IC +CG V +AFD + R G P I +
Sbjct: 7 CPVCGSDKFVYDPERGEVICANCGFVIQENMIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGT--GSALNYK---EKKIYESNKL--------------------IDELTFKLDLT 84
H T G N K +KIY K +D L +L+L
Sbjct: 67 HDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAKVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +R R++ + LL A
Sbjct: 187 GRSFRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------ERTRRRAIELLEKAYG 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKE++E L
Sbjct: 239 MGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEMVEKL 293
>gi|392597143|gb|EIW86465.1| BRF1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 639
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 23/271 (8%)
Query: 1 MP-CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGS 58
MP CT CG + D +G+ CV CG VV+ + +G V G GS
Sbjct: 1 MPTCTDCGGTVIEYNDAAGNGFCVKCGTVVEENTIVNEVTFGETSAGAAMVQGSYVGQGS 60
Query: 59 -------------ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
+ +E+ I +++ I L L+ ++ + + +F
Sbjct: 61 THARMSGPFGNRGSSESREQTIANASRKIQSFASALRLSDIVALAATRLYTLAVEHKFTK 120
Query: 106 GDWFPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + C YV R + ++ + + + +L +V+ELG + ++V+ LNL+LP VD
Sbjct: 121 GRKSINVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHIYLQLVQTLNLRLPVVDP 180
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R S L F DE+ ++ V L+ + ++T GRRP + A L+
Sbjct: 181 SHYISRF---SALLEFG--DETH--KVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N IE + + V T +KR +E
Sbjct: 234 ARMNNFRRSIEEIVQVVKIADTTLKKRLEEF 264
>gi|167516968|ref|XP_001742825.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779449|gb|EDQ93063.1| predicted protein [Monosiga brevicollis MX1]
Length = 285
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 39/276 (14%)
Query: 1 MP--CTSCGSKTLTREDISGSLICVSCG-------------------VVQAFDNYDAQLY 39
MP C SCGS ++ ++ G+ C CG VV+ F + D +
Sbjct: 1 MPPTCHSCGSSSVEEDESRGTTTCTVCGAIIEDNLIVSEVTFTEDRGVVERFVDADGRGA 60
Query: 40 GRDGPTGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G G Y + ++ I LI +L K+ + N +
Sbjct: 61 FNSGAYGGY-----------RDSRQTTIANGRALIQQLANKMQMNSHHIDMAVNYYKQAV 109
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
+ F G ++ AC Y+V R S + + + L +VY+L ++ L L
Sbjct: 110 EHRFTQGRPKEHVVAACLYIVCRQQKTSHMLLDFSDQLRVNVYKLAATYMQLCNKLLTSL 169
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P VD V R + R T+ + K + +++ + ++ GRRP V A
Sbjct: 170 PVVDPVLYIPRFAHHMRFGELTH-------EVSKTALRIVSRMKRDWIHVGRRPSGVCGA 222
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++G +++V + VH + T R R ++
Sbjct: 223 ALLLAARMHGFQRNLQDVQQAVHVGIQTVRARLEDF 258
>gi|358054427|dbj|GAA99353.1| hypothetical protein E5Q_06048 [Mixia osmundae IAM 14324]
Length = 636
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 119/277 (42%), Gaps = 38/277 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C S + + +GSL+C+ CG V D +++ + TG V GT +G A+
Sbjct: 8 CDVCSSSNVVNDPGNGSLVCIDCGSVIEEDAIVSEVTFAETSTGAAVVTGTYLSGDAVRA 67
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMI---DKITDGEFGLGDWFPILI----- 113
+ Y + E + G+R + ++ N + +++TD WF + I
Sbjct: 68 RGTGPYRNGAPGPESREQTLANGRRRMRELANSLSIEERVTD---AASRWFTLAIHSTFN 124
Query: 114 ---------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEV 162
AC Y+ R + +L + + + +L +V+ LG+ ++V+ LN+ ++P V
Sbjct: 125 RGRKTDHVVAACLYLACRHNKMTLMLIDFSDLLQVNVFVLGQTYLKLVKNLNMSERVPLV 184
Query: 163 D---IVSMFERVIRNSRLQGFTNLDES-MLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
D + F ++ + +LD S ++ RM + W L TGRRP V
Sbjct: 185 DPSIYIQRFAALLEFGKDTTQVSLDASRLIQRMDRD----------WML-TGRRPAGVCG 233
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A LV +N + V + V +T RKR E
Sbjct: 234 AALVIAARMNDYRRTLLEVTQVVKIADITLRKRLDEF 270
>gi|242398518|ref|YP_002993942.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
gi|242264911|gb|ACS89593.1| Transcription initiation factor IIB [Thermococcus sibiricus MM 739]
Length = 299
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 109/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G +IC +CG V +AFD + R G P I +
Sbjct: 7 CPVCGSDKFVYDPERGEIICANCGFVIQENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGT--GSALNYK---EKKIYESNKL--------------------IDELTFKLDLT 84
H T G N K +KIY K +D L +L+L
Sbjct: 67 HDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLGARLNLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + G +I AC Y RL + E+A + D E+
Sbjct: 127 KHVEEEAARLYRDAVKKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADMAKVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +R R++ + LL+
Sbjct: 187 GRSFRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------ERTRRRAIELLDQVYN 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKE++E L
Sbjct: 239 MGLTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEAARVTEVTVRNRYKEMVEKL 293
>gi|396081366|gb|AFN82983.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon romaleae SJ-2008]
Length = 395
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 65/282 (23%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP----TGIYVHVGTAGTG 57
C++C S + G++ C +CG+VQ + A L + +GP G V + + G
Sbjct: 4 CSNCSSGDFAEDTAQGAVYCTTCGMVQEENAIVASLNFNTEGPKATLNGQIVGIDSRNVG 63
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG--------DWF 109
+ +D S IKN I I GLG W+
Sbjct: 64 TGF-------------VDS-----------SYYIKNTISGIC-ASLGLGIDHVECSFRWY 98
Query: 110 PILI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+L+ AC Y+V R + + + ++ L+ DV+++G+ ++ L
Sbjct: 99 KLLLQYNLSKGKSILYTLSACIYIVCRQEKTPHMLMDFSNALHIDVFKIGKSFLKITTML 158
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTNLDES--MLDRMRKQGVLLLNCAVKWFLTTGRRP 213
+ +P +D R + R + L S ++ RM++ ++ GRRP
Sbjct: 159 GIDIPLIDPSLYMPRFVSRLRFESSEVLGLSLRLISRMKRD-----------WIVVGRRP 207
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ A L+ + G I +AK VH +V T KR KE+
Sbjct: 208 NNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEI 249
>gi|393795800|ref|ZP_10379164.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 303
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 113/301 (37%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C + + +G + C CG V ++F + R G PT + +
Sbjct: 11 CQRCNRGAILTDSNTGEMFCSKCGFVATDRVEQEGPEWRSFSKDEGDNRTRTGTPTSLAI 70
Query: 50 H----------VGTAGTGSALNYKEKKIYESNKL---------------------IDELT 78
H + TG L+ K E + +D L
Sbjct: 71 HDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRLK 130
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
KL L+ + + K D G P LI A Y R + +S+VA+ +N
Sbjct: 131 TKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSIN 190
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ L+LK+P V+ V R+ N+ L ++ +++ + +
Sbjct: 191 IKRKDIARCYRLLLRELDLKMPVVNPVKCISRISSNAGLS----------EKTKRKAIEI 240
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L+ A K L+ G+ PM + A L NG +++A T VT R RYK L EA
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYKGLKEA 300
Query: 259 L 259
L
Sbjct: 301 L 301
>gi|329766227|ref|ZP_08257785.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137286|gb|EGG41564.1| transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 303
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 113/301 (37%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C + + +G + C CG V ++F + R G PT + +
Sbjct: 11 CQRCNRGAILTDSNTGEMFCSKCGFVATDRIEQEGPEWRSFSKDEGDNRTRTGTPTSLAI 70
Query: 50 H----------VGTAGTGSALNYKEKKIYESNKL---------------------IDELT 78
H + TG L+ K E + +D L
Sbjct: 71 HDMGLATIINPINKDATGKPLSASMKSTIERLRTWDNRSQVHEPVDRNFRQAFSELDRLK 130
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
KL L+ + + K D G P LI A Y R + +S+VA+ +N
Sbjct: 131 TKLALSDTVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLSDVANSIN 190
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ L+LK+P V+ V R+ N+ L ++ +++ + +
Sbjct: 191 IKRKDIARCYRLLLRELDLKMPVVNPVKCISRISSNAGLS----------EKTKRKAIEI 240
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L+ A K L+ G+ PM + A L NG +++A T VT R RYK L EA
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVKNGEDKTQKDIAVAAGVTEVTIRNRYKGLKEA 300
Query: 259 L 259
L
Sbjct: 301 L 301
>gi|57617199|ref|NP_001003536.1| transcription factor IIIB 50 kDa subunit [Danio rerio]
gi|50417080|gb|AAH78247.1| Zgc:100856 [Danio rerio]
Length = 423
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
IL G C + + R + + + + +L+ D Y++G + + + LNL+ +V I M E
Sbjct: 114 ILAGCCMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES 173
Query: 171 VIRNSRL------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPV-VVAVLVF 223
+ +L + F+ + ++D Q LL A ++ TGRRP P+ + AV V
Sbjct: 174 FCYDFKLAPDEVEEVFSVAQQRLVD----QTSALLELAADTWILTGRRPFPLFLAAVYVA 229
Query: 224 VVELNGVS---------VKIENVAKEVHC-TVVTCRKRYKELLEALVKVAQALPWGKDVT 273
LN ++ KI +++ C + T KR ELLE L K+ + LPW +
Sbjct: 230 WQSLNPLARMKYSLMKFCKIAKAPEQLWCKSKDTINKRLNELLEVLCKLGRELPWVRPTD 289
Query: 274 ---------VKNVLKNAPFVMNYMEMKSMEKRKEERDGLNCGGIDLGDVVS 315
V+++LK+ ++ M +K EK+ EE +L D S
Sbjct: 290 IQMNTVTTLVEDILKHRKALL-IMAVKHYEKQLEETQTSQYSESELSDSKS 339
>gi|401881866|gb|EJT46148.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 2479]
gi|406701129|gb|EKD04282.1| transcription factor iiib 70 kd subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 673
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/311 (21%), Positives = 118/311 (37%), Gaps = 20/311 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGV------VQAFDNYDAQLYGRDGPTGIYVHVGTAGT 56
C C SK L + +G+++C CG+ + + + GR G +V + G
Sbjct: 6 CPGCKSKNLQTDYSAGNVVCQDCGIEVEQGILVSEIGFSEGAGGRVHVQGTFVSHNSTGI 65
Query: 57 GSALNYKEKKIYES-NKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGA 115
S + I E K I + ++ + + D +F G ++ +
Sbjct: 66 NSNRGVSSENIKEEGRKRIQLICNQMGIAPSVQRGAQRFYSLAVDNKFNRGRRTDFVVAS 125
Query: 116 CSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK--LPEVDIVSMFERVIR 173
C Y+ R + +L + + + L +VYELG ++ LNL LPE+D +
Sbjct: 126 CIYLYSRFEKDALMLIDFSERLQINVYELGATYLKLRSCLNLDQILPEIDP------AVY 179
Query: 174 NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVK 233
N R + + R L+ W +T GRRP + A LV ++
Sbjct: 180 NIRFANRLDFGAASATVARDASRLIKRFKADW-MTAGRRPAGICGACLVIAARMSDFLRT 238
Query: 234 IENVAKEVHCTVVTCRKRYKELLEALVKVAQALPW----GKDVTVKNVLKNAPFVMNYME 289
E VA+ V + +T +KR E W D+ +N + P + +
Sbjct: 239 PEEVAQVVKVSPLTIKKRLVEFAGTAAANKTVEEWRALTDADLEAENADELPPIMKKQLA 298
Query: 290 MKSMEKRKEER 300
+ ++ K ER
Sbjct: 299 KMAAQRVKRER 309
>gi|452820163|gb|EME27209.1| RNA polymerase III transcription factor IIIB [Galdieria
sulphuraria]
Length = 547
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 106/268 (39%), Gaps = 20/268 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C CGS L + G+ +C CG + + +++ +GP G VG
Sbjct: 26 CPHCGSTELEHDAAQGNTVCTQCGCIVEENTIVSEVTFVEGPGGHSSVVGQFVDSSGYVP 85
Query: 53 TAGT---GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
++G G + +E K+I E+ L L + Q M + F G
Sbjct: 86 SSGVIIPGLSKESREATRNNGRKIIAEVVGALHLNPSQEEQAFRMFLLAIEHNFLQGRKA 145
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFE 169
+ +C Y+V R + + + + L +VY+LGR + LNL LP +D
Sbjct: 146 SNVCASCLYIVCRREKTPHLLIDFSDYLQTNVYDLGRTFLKFARILNLSLPIIDPSLYIH 205
Query: 170 RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
R S+L GF E + + L+ + ++ TGRRP + A L +++G
Sbjct: 206 RFA--SKL-GF----EEKTHAVATSALRLIARMKRDWIHTGRRPSGLCGAALFVAAKMHG 258
Query: 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ V VT RKR EL E
Sbjct: 259 FYRSQREIVNVVRIGDVTLRKRLLELEE 286
>gi|336381997|gb|EGO23148.1| hypothetical protein SERLADRAFT_371381 [Serpula lacrymans var.
lacrymans S7.9]
Length = 593
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYV---HVGTAGTGS 58
CT CG + + +G+ CV CG V + +++ +G V +VG T +
Sbjct: 41 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 100
Query: 59 ALN----------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+N +E+ I +++ I L L+ S+ + + +F G
Sbjct: 101 RMNGPFGNRGSSESREQTIANASRKIQSFAAALRLSEVVSLAATRLYTLAVEHKFTKGRK 160
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+ C YV R + ++ + + + +L +V+ELG ++V+ LNLKLP VD
Sbjct: 161 SLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLKLPLVDPSHY 220
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
SR E ++ V L+ + ++T GRRP + A L+ +
Sbjct: 221 I------SRFAALLEFGEET-HKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARM 273
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N +E + + V T +KR E
Sbjct: 274 NNFRRSVEEIVQVVKIADTTLKKRLDEF 301
>gi|19173589|ref|NP_597392.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
gi|19170795|emb|CAD26569.1| TRANSCRIPTION INITIATION FACTOR TFIII B SUBUNIT (70kDa)
[Encephalitozoon cuniculi GB-M1]
Length = 395
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP----TGIYVHVGTAGTG 57
C++C + + G++ C +CG+VQ + A L + +GP G V + + G
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNFNTEGPKATLNGQIVGIDSRNVG 63
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG--------DWF 109
+ +D S IKN I I GLG W+
Sbjct: 64 TGF-------------VDS-----------SYYIKNTIGGIC-ASLGLGVDHVECSFRWY 98
Query: 110 PILI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+L+ AC Y+V R + + + ++ L+ DV+++G+ ++ L
Sbjct: 99 KLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNML 158
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTN----LDESMLDRMRKQGVLLLNCAVKWFLTTGR 211
+ +P +D R + SRL+ +N L ++ RM++ ++ GR
Sbjct: 159 GIDIPLIDPSLYMPRFV--SRLRFESNEVLGLSLRLISRMKRD-----------WIVVGR 205
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP + A L+ + G I +AK VH +V T KR KE+
Sbjct: 206 RPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEI 249
>gi|449329122|gb|AGE95396.1| transcription initiation factor tfIII b subunit [Encephalitozoon
cuniculi]
Length = 395
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 69/284 (24%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP----TGIYVHVGTAGTG 57
C++C + + G++ C +CG+VQ + A L + +GP G V + + G
Sbjct: 4 CSNCSCEDFAEDTAQGAVYCTTCGMVQEENAIVASLNFNTEGPKATLNGQIVGIDSRNVG 63
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG--------DWF 109
+ +D S IKN I I GLG W+
Sbjct: 64 TGF-------------VDS-----------SYYIKNTIGGIC-ASLGLGVDHVECSFRWY 98
Query: 110 PILI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+L+ AC Y+V R + + + ++ L+ DV+++G+ ++ L
Sbjct: 99 KLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNIL 158
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTN----LDESMLDRMRKQGVLLLNCAVKWFLTTGR 211
+ +P +D R + SRL+ +N L ++ RM++ ++ GR
Sbjct: 159 GIDIPLIDPSLYMPRFV--SRLRFESNEVLGLSLRLISRMKRD-----------WIVVGR 205
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP + A L+ + G I +AK VH +V T KR KE+
Sbjct: 206 RPNNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEI 249
>gi|426192806|gb|EKV42741.1| hypothetical protein AGABI2DRAFT_78178, partial [Agaricus bisporus
var. bisporus H97]
Length = 590
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------HV 51
C+ CG + + +G+ CV+CG V + ++ + G + H
Sbjct: 1 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGAAIVQGSFVAQGATHA 60
Query: 52 ---GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G G S+ + +E+ I + K I + L L+ + + M + +F G
Sbjct: 61 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEVVVLAARRMYTLAVEHKFTKGRK 120
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 121 SLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLRLPLVDPSHY 180
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L F DE+ ++ V L+ + ++T GRRP + A L+ +
Sbjct: 181 ISRF---AALLEFG--DETH--KVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAARM 233
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N IE + + V T +KR E
Sbjct: 234 NNFRRSIEEIVQVVKIADTTLKKRLDEF 261
>gi|189081454|sp|A8KBY2.1|BRF2_DANRE RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|158253578|gb|AAI54288.1| Zgc:100856 [Danio rerio]
Length = 423
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
IL G C + + R + + + + +L+ D Y++G + + + LNL+ +V I M E
Sbjct: 114 ILAGCCMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES 173
Query: 171 VIRNSRL------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPV-VVAVLVF 223
+ +L + F+ + ++D Q LL A ++ TGRRP P+ + AV V
Sbjct: 174 FCYDFKLAPDEVEEVFSVAQQRLVD----QTSALLELAADTWILTGRRPFPLFLAAVYVA 229
Query: 224 VVELNGVS---------VKIENVAKEVHC-TVVTCRKRYKELLEALVKVAQALPWGKDVT 273
LN ++ KI +++ C + T KR ELLE L K+ + LPW +
Sbjct: 230 WQSLNPLARMKYSLMKFCKIAKAPEQLWCKSKDTINKRLNELLEVLCKLGRELPWVRPTD 289
Query: 274 ---------VKNVLKNAPFVMNYMEMKSMEKRKEERDGLNCGGIDLGDVVS 315
V+++LK+ ++ + +K EK+ EE +L D S
Sbjct: 290 IQMNTVTTLVEDILKHRKALL-ILAVKHYEKQLEETQTSQYSESELSDSKS 339
>gi|313217012|emb|CBY38206.1| unnamed protein product [Oikopleura dioica]
Length = 357
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALN- 61
C CG + +G+++C +CG + + + + + G + +GT + LN
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSI-IGTFHSADGLNN 63
Query: 62 ---------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
++E + ++ + I L +L L Q + N + F G +
Sbjct: 64 SVNHIGSRNHREVTLRKAKESICRLCAELRLPKQHEDEAYNYYRLALNKSFTRGRRAEQV 123
Query: 113 IGACSYVVMRLDDKS--LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+C Y+ RL+ + L + + + VL +VY LG+ ++ + LN+ +D V R
Sbjct: 124 YASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPHMLDPVFYIHR 183
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ GF + + M ++ W +T GRRP + A V ++G
Sbjct: 184 F---AHQLGFGDSGTKNKEVMETSNRIVQRMNRDW-MTEGRRPAGICGAAFVIAARMHGF 239
Query: 231 SVKIENVAKEVHCTVVTCRKRYKEL 255
IE++ K T RKR E
Sbjct: 240 RCNIEDITKVFKIGPNTIRKRLHEF 264
>gi|18977749|ref|NP_579106.1| transcription initiation factor IIB [Pyrococcus furiosus DSM 3638]
gi|397651869|ref|YP_006492450.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
gi|48429160|sp|P61998.1|TF2B_PYRFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|48429161|sp|P61999.1|TF2B_PYRWO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|1206029|gb|AAC43724.1| TFIIB [Pyrococcus furiosus]
gi|18893488|gb|AAL81501.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|393189460|gb|AFN04158.1| transcription initiation factor IIB [Pyrococcus furiosus COM1]
Length = 300
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C +C S L + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRERRSRTGAPESILL 66
Query: 50 H-------VGTAGTGSAL------------------NYKEKKIYESNKLIDELTFKLDLT 84
H +G + S L + E+ + + +D +T +L L
Sbjct: 67 HDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G ++ AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L+ A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILDEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|303389255|ref|XP_003072860.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
gi|303302003|gb|ADM11500.1| transcription initiation factor TFIIIB subunit Brf1
[Encephalitozoon intestinalis ATCC 50506]
Length = 395
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 110/282 (39%), Gaps = 65/282 (23%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP----TGIYVHVGTAGTG 57
C++C S + G++ C CG+VQ + A L + +GP G V + + G
Sbjct: 4 CSNCSSGDFAEDTAQGAVYCTVCGMVQEENAIVASLNFNTEGPKATLNGQIVGMDSRNVG 63
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG--------DWF 109
+ +D S IKN I I GLG W+
Sbjct: 64 TGF-------------VDS-----------SYYIKNTISGIC-ASLGLGVDHVECSFRWY 98
Query: 110 PILI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+L+ AC Y+V R + + + ++ L+ DV+++G+ ++ L
Sbjct: 99 KLLLQYNLSKGKSILYTLSACIYIVCRQERTPHMLMDFSNALHIDVFKIGKSFLKITNML 158
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTNLDES--MLDRMRKQGVLLLNCAVKWFLTTGRRP 213
+ +P +D R + R + L S ++ RM++ ++ GRRP
Sbjct: 159 GIDIPLIDPSLYMPRFVSRLRFESTEVLGLSLRLISRMKRD-----------WIVVGRRP 207
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ A L+ + G I +AK VH +V T KR KE+
Sbjct: 208 NNLCGAALLIASRIVGEERSIYEIAKIVHVSVSTINKRLKEI 249
>gi|340345821|ref|ZP_08668953.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520962|gb|EGP94685.1| Transcription initiation factor TFIIB [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 303
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 115/301 (38%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C + +G + C CG V +AF + R G PT + +
Sbjct: 11 CQRCNKGVFLTDSNTGEMFCSKCGFVATDRIEQEGPEWRAFSKDEGDNRTRTGTPTSLAM 70
Query: 50 H----------VGTAGTGSALNYKEKKIYESNKL---------------------IDELT 78
H V TG L+ K E + +D L
Sbjct: 71 HDMGLATIINPVNKDATGKPLSASMKSTIERLRTWDNRSQVHEPADRNFRQAFSELDRLK 130
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
KL L+ + + K D G P LI A Y R + +++V++ +N
Sbjct: 131 TKLALSDAVIEKTAYIYRKALDKGLVRGRSIPGLIAASLYAACRNTETPRTLTDVSNGIN 190
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ L+LK+P V+ + R+ S + G + ++ +++ V +
Sbjct: 191 IKRKDIARCYRLLLRELDLKMPVVNPIKCVSRI---SSIAGLS-------EKTKRKAVEI 240
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L+ A K L+ G+ PM + A L +NG + +++A T VT R RYK L EA
Sbjct: 241 LDQAAKIELSAGKDPMGLAAAALYLSCVINGENKTQKDIAVSAGVTEVTIRNRYKGLKEA 300
Query: 259 L 259
L
Sbjct: 301 L 301
>gi|341899796|gb|EGT55731.1| CBN-BRF-1 protein [Caenorhabditis brenneri]
Length = 734
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYVHVG---TAGTG 57
C++CGS + + G C +CG V ++ + Q R G +G + VG +A
Sbjct: 5 CSNCGSAEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSG-HTLVGQFVSAERA 63
Query: 58 SALNY--------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
+A N+ +E + K++DEL +L + N G
Sbjct: 64 AANNFNGMGSQESREMTYAKGRKVVDELGSQLRINAHCMNTAFNFFKMCVSRNLTRGRNR 123
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---IVS 166
++ C Y+ RL++ + + + + V +V++LGR + + L + LP D +
Sbjct: 124 SSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRALRINLPSTDPCLYIM 183
Query: 167 MFERVIR-NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
F V+ R + NL ++ RM++ W ++TGRRP + A L+
Sbjct: 184 RFACVLDFGDRQKEVVNLATRLVQRMKRD----------W-MSTGRRPTGICGAALLIAA 232
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ I ++ + VH + RKR E
Sbjct: 233 RSMNFNRSISDIVRVVHISESVIRKRLDEF 262
>gi|409074474|gb|EKM74871.1| hypothetical protein AGABI1DRAFT_47247, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 662
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------HV 51
C+ CG + + +G+ CV+CG V + ++ + G + H
Sbjct: 7 CSDCGGTVIEYDQAAGNGFCVTCGTVVEENTIVNEIAFGETANGTAIVQGSFVAQGATHA 66
Query: 52 ---GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G G S+ + +E+ I + K I + L L+ + + M + +F G
Sbjct: 67 RMGGPYGNRSSSDSREQTIENATKKIQNIASILRLSEVVVLAARRMYTLAVEHKFTKGRK 126
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 127 SLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQILNLRLPLVDPSHY 186
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L F DE+ ++ V L+ + ++T GRRP + A L+ +
Sbjct: 187 ISRF---AALLEFG--DETH--KVATDAVRLVQRFDRDWMTKGRRPAGICGAALLLAARM 239
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N IE + + V T +KR E
Sbjct: 240 NNFRRSIEEIVQVVKIADTTLKKRLDEF 267
>gi|389851971|ref|YP_006354205.1| transcription initiation factor B [Pyrococcus sp. ST04]
gi|388249277|gb|AFK22130.1| Transcription initiation factor B [Pyrococcus sp. ST04]
Length = 302
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 109/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L + G + C CG V +AFD R G P I +
Sbjct: 10 CPYCGSSKLIYDYERGEIFCAVCGSVVTQDIIDLGQEWRAFDVSQRNKRSRTGAPESILI 69
Query: 50 HVGTAGT--GSALNYK---EKKIYESNKL--------------------IDELTFKLDLT 84
H T GS N +K+Y K +D +T +L L
Sbjct: 70 HDKGLSTNIGSDKNVSGLMREKMYRLRKWQSRLRVGDATDRNLAFALTELDRITSQLKLP 129
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 130 RYVKEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEI 189
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + ++ R++ V +L A K
Sbjct: 190 GRSFRFIARNLNLT-PKKLFVKPTDYVTKFADELGLS-------EKTRRRAVEILEMAYK 241
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+T+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 242 LGITSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 296
>gi|332157709|ref|YP_004422988.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
gi|331033172|gb|AEC50984.1| transcription initiation factor IIB [Pyrococcus sp. NA2]
Length = 300
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 H-------VGTAGTGSAL------------------NYKEKKIYESNKLIDELTFKLDLT 84
H +G T + L + E+ + + +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRTLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + + E+
Sbjct: 127 KHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +R+R++ + +L A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------ERVRRRAIEILEEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|313237620|emb|CBY12764.1| unnamed protein product [Oikopleura dioica]
Length = 569
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALN- 61
C CG + +G+++C +CG + + + + + G + +GT + LN
Sbjct: 5 CKKCGQYEAEEDPTTGTVVCTNCGAISEENQIVSSIQFTENAGGSSI-IGTFHSADGLNN 63
Query: 62 ---------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
++E + ++ + I L +L L Q + N + F G +
Sbjct: 64 SVNHIGSRNHREVTLRKAKESICRLCAELRLPKQHEDEAYNYYRLALNKSFTRGRRAEQV 123
Query: 113 IGACSYVVMRLDDKS--LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+C Y+ RL+ + L + + + VL +VY LG+ ++ + LN+ +D V R
Sbjct: 124 YASCVYLSCRLNPRQNELMLLDFSQVLKVNVYILGKTFLKLSQELNITPHMLDPVFYIHR 183
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ GF + + M ++ W +T GRRP + A V ++G
Sbjct: 184 F---AHQLGFGDSGTKNKEVMETSNRIVQRMNRDW-MTEGRRPAGICGAAFVIAARMHGF 239
Query: 231 SVKIENVAKEVHCTVVTCRKRYKEL 255
IE++ K T RKR E
Sbjct: 240 RCNIEDITKVFKIGPNTIRKRLHEF 264
>gi|449544216|gb|EMD35190.1| hypothetical protein CERSUDRAFT_116658 [Ceriporiopsis subvermispora
B]
Length = 662
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL- 60
CT CG + + +G+ CV CG VV+ + ++G V G G+
Sbjct: 4 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVVFGETSSGAAMVQGSFVGQGATRA 63
Query: 61 ------------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+E+ I +++ I ++ + L+ + + + +F G
Sbjct: 64 KMGGPFGNRGNSESREQTIANASRKIQQVATAMRLSEVVQLAATRLYTLAVEHKFTKGRK 123
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 124 SMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDPSHY 183
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L+ + LD R L+ W L GRRP + A L+ +
Sbjct: 184 ISRFA--ALLEFGEETHQVALDATR----LVARFDRDW-LARGRRPAGICGACLLLAARM 236
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N +E V + V T RKR +E
Sbjct: 237 NNFRRSVEEVVQVVKIADTTLRKRLEEF 264
>gi|85000687|ref|XP_955062.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303208|emb|CAI75586.1| unnamed protein product [Theileria annulata]
Length = 531
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 132/335 (39%), Gaps = 37/335 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C CGS + G L+C CG V + Q+ D +G +G
Sbjct: 6 CEYCGSSEIEDYTHLGELVCQDCGAVLQENTILEQVEYSDNNSGNTQVLGRFVSNLSSGR 65
Query: 53 TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
A T + + +E+ I N+ I ++ L L+ K + F +G +
Sbjct: 66 QALTHTTWHSREQVINRGNENIKKIAEALRLSPHHIDAAKRIYLLAVQRNFTMGRNNLHV 125
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
C Y + R + + + + VL V +G++ ++V L++ +P +D FER
Sbjct: 126 ASCCLYTICRRERTPHLLIDFSDVLLTPVKTIGQIFMKLVRMLHISVPNIDPSIFFERFA 185
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
T L + ++ G ++ + +L TGRRP + A L+ +G+S+
Sbjct: 186 --------TQLQLKDIHKIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGISL 237
Query: 233 KIENVAKEVHCTVVTCRKRYKEL---LEALVKVAQALPWGKDVTVKNVLKNAPFVMNYME 289
E+V+ V + T KR E A +KV++ D K L P ++N +
Sbjct: 238 SAESVSSVVRISHPTILKRLSEFKVTSTAHIKVSEFDNTDIDSLPKLTL--PPCLLNKL- 294
Query: 290 MKSMEKRKEERDGLNCGGIDLGDVVSECLKKDVEY 324
RK++ +G D SEC+ +Y
Sbjct: 295 -----ARKKKYEG--------SDYTSECVSTSSDY 316
>gi|315230862|ref|YP_004071298.1| transcription initiation factor B [Thermococcus barophilus MP]
gi|315183890|gb|ADT84075.1| transcription initiation factor B [Thermococcus barophilus MP]
Length = 299
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 109/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPEHGEIVCSKCGFVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGT--GSALNYK---EKKIYESNKL--------------------IDELTFKLDLT 84
H T GS N +K+Y K +D + +L L
Sbjct: 67 HDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 127 KHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + LL A
Sbjct: 187 GRSFRFIARNLNLT-PKKLFVKPTDYVNKFADELGLS-------EKVRRRAIELLEEAYN 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|296424786|ref|XP_002841927.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638179|emb|CAZ86118.1| unnamed protein product [Tuber melanosporum]
Length = 553
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 110/270 (40%), Gaps = 25/270 (9%)
Query: 3 CTSCGSKTLTR-EDISGSLICVSCG--VVQAFD----NYDAQLYGRDGPTGIYVHVGTAG 55
C SCGS T +D +G L+C +CG V +F ++ G G YV G
Sbjct: 5 CPSCGSSNPTDFDDSTGRLVCTNCGHVVNDSFIVSEISFGETSSGAARVQGSYVAEGQTH 64
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+G++L +E+ I + I EL ++ + + F G
Sbjct: 65 AGGGGGRFRSGNSLESREQIIQNGRRKIVELAGAVNCPEHFADHAQRWFTLSVTHNFNRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I C Y+V RL+ S + + + +LN +V+ LG ++V+ L ++LP +D
Sbjct: 125 RKTQFVIACCLYIVCRLEKSSHMLIDFSDILNVNVFSLGHTYLQLVQILEVRLPHIDPTV 184
Query: 167 MFERVIRNSRLQGFTNLD-ESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R + +LD S ++ + ++ + ++ GRRP + A L+
Sbjct: 185 YVYRFAK--------HLDFGSEQTKVANDALRIIQRMSRDWMVQGRRPSGICGAALILAA 236
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V V +T +KR E
Sbjct: 237 RMNNFRRSVREVVYVVKVADLTIQKRLDEF 266
>gi|302682668|ref|XP_003031015.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
gi|300104707|gb|EFI96112.1| hypothetical protein SCHCODRAFT_77245 [Schizophyllum commune H4-8]
Length = 543
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGP-----TGIYVHVGTA-- 54
CT CG T+ + +G+ C CG VV+ + ++G G +V G
Sbjct: 4 CTECGGTTIDSDAAAGNSFCTQCGTVVEESQIVNEVVFGETSTGAAMVQGSFVAQGATRA 63
Query: 55 ------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G + +E+ + + + I ++ L L+ + + +F G
Sbjct: 64 RLGGPYGNRGNVESREQTLANAERNIAQIAIALHLSEVVRFAALRLYTLAVEHKFTKGRK 123
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+ C YV R + + + + + +L +V+ELG + ++V+ L L+LP VD
Sbjct: 124 SMNVAAVCLYVACRQKETRQYMLIDFSDILEVNVFELGHIYLQLVQTLCLRLPLVDPSHY 183
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L F DE+ R+ V L+ + ++T GRRP + A L+ +
Sbjct: 184 ISRF---AALLEFG--DETQ--RVANDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARM 236
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N +E + + V VT +KR +E
Sbjct: 237 NNFRRSVEEIVQVVKIADVTLKKRLEEF 264
>gi|390358626|ref|XP_794011.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Strongylocentrotus purpuratus]
Length = 766
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 24/271 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYG-----RDGPTGIYVHVGTAGTG 57
C++CG + + G+ +CVSCG V DN+ G G + I V + G
Sbjct: 7 CSNCGGSDIDTDQARGNAVCVSCGAV-IEDNFIVSEVGFAENTLGGTSVIGQFVSSEGDK 65
Query: 58 SAL---NY-----KEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
S N+ KE + + + + I L +L L R+ N + G
Sbjct: 66 SHTLGNNFRHGYGKESRTVTLQQGKRHIQNLGGQLKLNQHRNDMAYNFFKMAVQKKLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ AC Y+V RL+ + +++ +L +VY LG+ ++ + L++ +P +D
Sbjct: 126 RKTMHIVAACLYLVCRLESTPHMLLDLSDLLQVNVYVLGKTYLKLCQELHINVPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+R T D + + + L++ + ++ TGRRP + A L+
Sbjct: 186 FIQRFAHKLEFDERT-------DVVCETALRLVSRMKRDWMHTGRRPSGLCGAALLVAAR 238
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S ++V K V T RKR E E
Sbjct: 239 MHNFSRTQKDVIKVVKVCDATLRKRLSEFEE 269
>gi|14520892|ref|NP_126367.1| transcription initiation factor IIB [Pyrococcus abyssi GE5]
gi|13878809|sp|Q9V0V5.1|TF2B_PYRAB RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|5458109|emb|CAB49598.1| TATA box binding protein TFIIB-BBRE complex, chain B [Pyrococcus
abyssi GE5]
gi|380741440|tpe|CCE70074.1| TPA: transcription initiation factor IIB [Pyrococcus abyssi GE5]
Length = 300
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 110/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + + E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|67469641|ref|XP_650799.1| transcription initiation factor IIIB chain BRF [Entamoeba
histolytica HM-1:IMSS]
gi|56467455|gb|EAL45413.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709301|gb|EMD48588.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
histolytica KU27]
Length = 546
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 100/266 (37%), Gaps = 36/266 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL----YGRDGPTGIYVHVGTAGTGS 58
C+ CG E GSLIC +CG+V DN A + + G I G+
Sbjct: 23 CSYCGGTEFRNE--QGSLICENCGLV--IDNSRALIAELQFDESGGKKILA-------GT 71
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN--------MIDKITDGEFGLGDWFP 110
EKK Y+ + + + ++ +SI I++ M IT G F
Sbjct: 72 QFGETEKKRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGR-----KFS 126
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
GAC Y++ R + + + A VL+ V LGR R E L LP VD +R
Sbjct: 127 YSAGACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFDLPFVDPCLYLQR 186
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ E D +R + W + GRRP + L L+G
Sbjct: 187 FGEDLSF-------EKTGDVVRTAMRICQRMNRDW-MHYGRRPSGICGVALYLAGRLHGE 238
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELL 256
+E + V + T R R KE L
Sbjct: 239 PRTLEEIVHVVRLSTTTVRVRLKEFL 264
>gi|167389091|ref|XP_001738814.1| transcription factor IIIB 60 kDa subunit [Entamoeba dispar SAW760]
gi|165897805|gb|EDR24877.1| transcription factor IIIB 60 kDa subunit, putative [Entamoeba
dispar SAW760]
Length = 546
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 100/266 (37%), Gaps = 36/266 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL----YGRDGPTGIYVHVGTAGTGS 58
C+ CG E GSLIC +CG+V DN A + + G I G+
Sbjct: 23 CSYCGGTEFRNE--QGSLICENCGLV--IDNSRALIAELQFDESGGKKILA-------GT 71
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN--------MIDKITDGEFGLGDWFP 110
EKK Y+ + + + ++ +SI I++ M IT G F
Sbjct: 72 QFGETEKKRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGR-----KFS 126
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
GAC Y++ R + + + A VL+ V LGR R E L LP VD +R
Sbjct: 127 YSAGACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFDLPFVDPCLYLQR 186
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ E D +R + W + GRRP + L L+G
Sbjct: 187 FGEDLAF-------EKTGDVVRTAMRICQRMNRDW-MHYGRRPSGICGVALYLAGRLHGE 238
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELL 256
+E + V + T R R KE L
Sbjct: 239 PRTLEEIVHVVRLSTTTVRVRLKEFL 264
>gi|350525782|ref|YP_004885404.1| transcription initiation factor B [Thermococcus sp. AM4]
gi|345650601|gb|AEO13966.1| Transcription initiation factor B [Thermococcus sp. AM4]
Length = 300
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 107/301 (35%), Gaps = 58/301 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPICGSTEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAFDASQREKRARAGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D L L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A V D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEI 186
Query: 145 GRMITRVVEFLNLK-----LPEVDIVSMFERVIRNSRLQGFTNLDE-SMLDRMRKQGVLL 198
GR + LNL + D VS F DE + +++R++ + L
Sbjct: 187 GRSFRFIARHLNLTPKKLFVKPTDYVSKF--------------ADELGLSEKVRRRAIEL 232
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + LT+G+ P +V A L + G VA+ T VT R RYKEL+E
Sbjct: 233 LEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIEK 292
Query: 259 L 259
L
Sbjct: 293 L 293
>gi|407042182|gb|EKE41189.1| transcription initiation factor IIIB chain BRF, putative [Entamoeba
nuttalli P19]
Length = 546
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 100/266 (37%), Gaps = 36/266 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL----YGRDGPTGIYVHVGTAGTGS 58
C+ CG E GSLIC +CG+V DN A + + G I G+
Sbjct: 23 CSYCGGTEFRNE--QGSLICENCGLV--IDNSRALIAELQFDESGGKKILA-------GT 71
Query: 59 ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN--------MIDKITDGEFGLGDWFP 110
EKK Y+ + + + ++ +SI I++ M IT G F
Sbjct: 72 QFGETEKKRYDIERQMRAIKKVGEMLKMKSIDIESGQRLYRVAMQTGITKGR-----KFS 126
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
GAC Y++ R + + + A VL+ V LGR R E L LP VD +R
Sbjct: 127 YSAGACLYIICRRERSDHLLIDFADVLHVSVRRLGRTFIRFCEELKFDLPFVDPCLYLQR 186
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ E D +R + W + GRRP + L L+G
Sbjct: 187 FGEDLAF-------EKTGDVVRTAMRICQRMNRDW-MHYGRRPSGICGVALYLAGRLHGE 238
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELL 256
+E + V + T R R KE L
Sbjct: 239 PRTLEEIVHVVRLSTTTVRVRLKEFL 264
>gi|336369209|gb|EGN97551.1| hypothetical protein SERLA73DRAFT_75218 [Serpula lacrymans var.
lacrymans S7.3]
Length = 785
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 23/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYV---HVGTAGTGS 58
CT CG + + +G+ CV CG V + +++ +G V +VG T +
Sbjct: 144 CTDCGGTVIEYDAAAGNGFCVKCGTVVEENTIVSEVTFGETSAGAAMVQGSYVGQGSTHA 203
Query: 59 ALN----------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+N +E+ I K I L L+ S+ + + +F G
Sbjct: 204 RMNGPFGNRGSSESREQTIANGKK-IQSFAAALRLSEVVSLAATRLYTLAVEHKFTKGRK 262
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+ C YV R + ++ + + + +L +V+ELG ++V+ LNLKLP VD
Sbjct: 263 SLNVAAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLKLPLVDPSHY 322
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
SR E ++ V L+ + ++T GRRP + A L+ +
Sbjct: 323 I------SRFAALLEFGEET-HKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAARM 375
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N +E + + V T +KR E
Sbjct: 376 NNFRRSVEEIVQVVKIADTTLKKRLDEF 403
>gi|331746825|ref|YP_004422862.1| Transcription initiation factor B [Thermococcus barophilus MP]
gi|315185036|gb|ADT85220.1| Transcription initiation factor B [Thermococcus barophilus MP]
Length = 301
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 109/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C SCGS L + G + C CG + +AFD + R G P I +
Sbjct: 10 CPSCGSSKLIYDYERGEIFCAVCGSIVTQDIVDLRQEWRAFDASQREKRSRTGAPESILL 69
Query: 50 HVGTAGT--GSALNYK---EKKIYESNKL--------------------IDELTFKLDLT 84
H T GS N +K+Y K +D + +L L
Sbjct: 70 HDKGLSTDIGSDRNITGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLP 129
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 130 RHVEEEAARLYREAIRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIADIARVDKKEI 189
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
R + LNL P+ V + V + + G + +++R++ + LL A
Sbjct: 190 ARSFRFIARNLNLT-PKKLFVKPTDYVNKFADELGLS-------EKVRRRAIELLEEAYN 241
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 242 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 296
>gi|240103255|ref|YP_002959564.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910809|gb|ACS33700.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 300
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 107/301 (35%), Gaps = 58/301 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPICGSTEFIYDPSRGEVVCKVCGYVIEENVVDMGPEWRAFDASQREKRARAGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D L L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLRLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A V D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSRVDKKEI 186
Query: 145 GRMITRVVEFLNLK-----LPEVDIVSMFERVIRNSRLQGFTNLDE-SMLDRMRKQGVLL 198
GR + LNL + D VS F DE + +++R++ + L
Sbjct: 187 GRSFRFIARHLNLTPKKLFVKPTDYVSKF--------------ADELGLSEKVRRRAIEL 232
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + LT+G+ P +V A L + G VA+ T VT R RYKEL+E
Sbjct: 233 LEEAYEKGLTSGKSPAGLVAAALYIAGIMEGERRTQREVAEVARVTEVTVRNRYKELIEK 292
Query: 259 L 259
L
Sbjct: 293 L 293
>gi|299738096|ref|XP_001838087.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
gi|298403152|gb|EAU83664.2| transcription factor TFIIIB complex subunit brf1 [Coprinopsis
cinerea okayama7#130]
Length = 864
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 108/269 (40%), Gaps = 24/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGR---DGPTGI 47
C CG + + +G+ C+ CG V N A + G G T
Sbjct: 169 CNECGGSVIEYDHAAGNGFCIQCGTVVEENLIVNEIVFGETSNGAAIVQGSFVAQGATHA 228
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G G + +E+ I +NK I + L L + + + +F G
Sbjct: 229 RMS-GPYGNRGSTESREQTIANANKKIQSIANVLRLNETVCLAATRLYTLAVEHKFTKGR 287
Query: 108 WFPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ C YV R + K+ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 288 KSLNVVAVCLYVACRQKETKTYMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDPSH 347
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R + L F DE+ ++ V L+ + ++T GRRP + A L+
Sbjct: 348 YISRF---AALLEFG--DETH--KVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 400
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N +E + + V T +KR E
Sbjct: 401 MNNFRRSVEEIVQVVKIADTTLKKRLDEF 429
>gi|57641215|ref|YP_183693.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|73919861|sp|Q5JGN1.1|TF2B1_PYRKO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|57159539|dbj|BAD85469.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 300
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 108/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAFDPGQREKRARVGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D L L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A V D E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A +
Sbjct: 187 GRSFRFIARHLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYQ 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L + G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|14591268|ref|NP_143345.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|6647871|sp|O59151.1|TF2B_PYRHO RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|3257906|dbj|BAA30589.1| 300aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 300
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + + E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A +
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYR 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|71027505|ref|XP_763396.1| transcription factor IIIb subunit [Theileria parva strain Muguga]
gi|68350349|gb|EAN31113.1| transcription factor IIIb subunit, putative [Theileria parva]
Length = 526
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 131/335 (39%), Gaps = 36/335 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTG----IYVHVGTAGTG- 57
C CGS + G LIC CG V + Q+ D +G + V +G
Sbjct: 6 CEYCGSSEIEDYTHLGELICQDCGAVLQENTILEQVEYADNSSGNTQVLGRFVSNLSSGR 65
Query: 58 SALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
L+Y +E+ I N+ I + L L+ K + F +G +
Sbjct: 66 QTLSYNNWHSREQVINRGNENIKRIAEALKLSPHHIDAAKRIYLLAVQRNFTMGRNNLHV 125
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
C Y + R + + + + VL V +G++ ++V L++ +P VD FER
Sbjct: 126 ASCCLYTICRREKTPHLLIDFSDVLLTPVKTIGQIFMKLVRMLHISVPNVDPSIFFERFA 185
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+L+ + ++ G ++ + +L TGRRP + A L+ +G+ +
Sbjct: 186 TQLKLKD--------IHKIINTGNRIIQAMNRDWLCTGRRPTGLCGAALLVAARFHGIPL 237
Query: 233 KIENVAKEV---HCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYME 289
E V+ V H T++ +K A +KV++ D K L P ++N
Sbjct: 238 SAEAVSSVVRISHPTILKRLSEFKVTSTANIKVSEFDTIDIDTLPK--LSLPPCLLN--- 292
Query: 290 MKSMEKRKEERDGLNCGGIDLGDVVSECLKKDVEY 324
+ KRK+ DG SEC+ +Y
Sbjct: 293 --KLVKRKKYYDG--------DSTASECVSTSSDY 317
>gi|395328548|gb|EJF60939.1| hypothetical protein DICSQDRAFT_170484 [Dichomitus squalens
LYAD-421 SS1]
Length = 724
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGI------YVHVGTA-- 54
CT CG + + +G+ CV CG V + ++ + TG +V G
Sbjct: 12 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENTIVNEVTFGETSTGAAMVQGSFVAQGATRA 71
Query: 55 ------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G +E+ I +++ I ++ L L+ S+ + + +F G
Sbjct: 72 RMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEVVSLAATRLYTLAVEHKFTKGRK 131
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 132 SMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDPSHY 191
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L+ + +D +R L+ W +T GRRP + A L+ +
Sbjct: 192 ISRFA--ALLEFGEETHQVAMDAIR----LVQRFDRDW-MTKGRRPAGICGACLLLAARM 244
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N + + + V T +KR +E
Sbjct: 245 NNFRRSVAEIVQVVKIADTTLKKRLEEF 272
>gi|189238877|ref|XP_973702.2| PREDICTED: similar to transcription factor IIIB 90 kDa subunit
(TFIIIB90) [Tribolium castaneum]
Length = 617
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYVHVGTAG- 55
C SCGS + + G +C +CG ++ A ++ +G + G +V + G
Sbjct: 7 CKSCGSSDIEVDPARGDAVCTNCGSVLEVNIIVAEVQFEEGAHGTNSAIGQFVSADSKGG 66
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFGL 105
G+ + +E + ++ I +L +L L Q I N +
Sbjct: 67 ATKFGASFHVGAGVESREMTLRKARNGITQLCNQLQLN-QHCIDTACNFFKMALNRNLTK 125
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD-- 163
G + AC Y+ R + + + +++ VL YELGR ++ + L++ +P VD
Sbjct: 126 GRKNTHVHAACVYLTCRTEGTAHLLIDISDVLQICCYELGRTYLKLSQALSINIPAVDPC 185
Query: 164 --IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
I+ ++ S+ Q N ++ RM++ + +GRRP + A L
Sbjct: 186 LYILRFAAKLEFGSKTQQVANTALRLVQRMKRDSI-----------HSGRRPSGLCGAAL 234
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ L+ ++ K V T RKR E
Sbjct: 235 LIAARLHEFGRSASDIVKIVKVHESTLRKRLIEF 268
>gi|308162410|gb|EFO64809.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia P15]
Length = 476
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 43/317 (13%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGT 53
+ C C S + ++ + C +CG+V D Y Q G G ++ T
Sbjct: 3 ISCPFCLSSSTITDEGQAKVFCGNCGLV-IMDTLIVNDLIYQDQ-NGVSTVMGNFISANT 60
Query: 54 AGTGSALNYKE-KKIYESNKLIDELTFKLDLTGQRSIQIKNMI-DKITDGEFGLGDWFPI 111
+ T +L K K E+ +I L ++L + S N + DK+T G +
Sbjct: 61 SSTARSLAIKHFSKELETIAMI--LNLPMELVRKASDYYANCLRDKVTRGRRN-----NL 113
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
L A Y+V R + S + + A LN V+ L + I + N+KLP D+ S+ R
Sbjct: 114 LAAALLYIVGRQHNLSHLLIDYADALNVSVFTLNKYIQPFLRQYNIKLPYQDLESLLPRF 173
Query: 172 I-------------RNSRLQGFTNLDESMLDRMRKQGVL----LLNCAVKWFLTTGRRPM 214
+ N F N+ + +D++R+ ++ +L + + TGR P
Sbjct: 174 VDSILKEEFTATFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPS 233
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV 274
++ A + ++L + I V++ V C+ T +R +E+ Q+ +T+
Sbjct: 234 GLLGASIFVALKLLNYGIPIHRVSRCVFCSPDTVARRLQEM--------QSSELFAKLTI 285
Query: 275 KNVLKNAPFVMNYMEMK 291
+VL+N V+ ++++
Sbjct: 286 GDVLRNVDLVLENIDVR 302
>gi|375083610|ref|ZP_09730629.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
gi|374741803|gb|EHR78222.1| Transcription initiation factor IIB 2 [Thermococcus litoralis DSM
5473]
Length = 306
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 124/304 (40%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS++L + ++C +CG V +AF+ + R G P + +
Sbjct: 10 CPICGSESLIYDPSRAEIVCSNCGYVLAEEIMDLGPEWRAFEPGQREKRSRVGAPETVML 69
Query: 50 HVGTAGTGSALNYKEKKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDK---------- 97
H G + ++++ K I+ S+ I ++L + QR ++I + ID+
Sbjct: 70 H--DKGLSTDIDWRNKDIHGSDISGSIRTKIYRLRMW-QRRMRISDAIDRNLAFALSELD 126
Query: 98 ITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ GL G ++ AC Y R+ + + E+
Sbjct: 127 RMGSQLGLPRNIREIAAVLYRKAVINKLVRGRSIEGMVSACLYAACRIANAPRTLDEIED 186
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LNL+L S + VIR G + ++ +++
Sbjct: 187 VSKVDKKEIGRSYRYLARELNLRLKPT---SPIDYVIRFGDQLGIS-------EKTKRRA 236
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
V +LN A++ LT+G+ P + A + L G + VA+ T VT R RYKEL
Sbjct: 237 VKILNQAIEKGLTSGKGPTGIAAAAIYIASLLEGEKMTQREVAEVARVTEVTVRNRYKEL 296
Query: 256 LEAL 259
++ L
Sbjct: 297 VDKL 300
>gi|47223672|emb|CAF99281.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 32/234 (13%)
Query: 3 CTSCGSKTLTREDISGS--LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
C CGS + ++D+ L+CV CG V + + + +G G Y +
Sbjct: 2 CRGCGSTNIIQDDLYAQTQLVCVDCGSVVSEGVLNQETFG--GSVVSYSQSTAVDKKPSR 59
Query: 61 NYKE-----KKIYES---NKLIDEL---TFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
+ KE K I + NK I+EL TF Q+ I++ +I
Sbjct: 60 SLKECLRRVKAICRTLRVNKEIEELSQNTFTQAYQHQKYIRVSLQKKEI----------- 108
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFE 169
L+G C V RL + + I + S+L+ DV G + +V+ LN++ P + E
Sbjct: 109 --LVGCCVLVSCRLLNWPVTIGTMGSLLDTDVLHFGSIYQEMVKILNIEAPSCSFLDEME 166
Query: 170 RVIRNSRLQGFTNLDESMLDR---MRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+ ++ ++ E + ++ + K+ V L+ A ++ TGRRP+P+++A
Sbjct: 167 GYCQEYQISA-PHVCEELAEKSKDLTKRTVALVELAADSWIVTGRRPVPIMMAA 219
>gi|409095301|ref|ZP_11215325.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 300
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 106/295 (35%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSEEFIYDPSRGEIVCAKCGYVVEENVVDEGPEWRAFDPGQREKRARVGAPESILL 66
Query: 50 HVGTAGTG-----SALNYKEKKIYESNKL--------------------IDELTFKLDLT 84
H T S +K+Y K +D L L L
Sbjct: 67 HDKGLSTDIGIDRSVTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASHLALP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A V D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKIPRTLDEIAEVSKVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++RK+ + LL A
Sbjct: 187 GRSFRFIARHLNL-TPKKLFVKPSDYVNKFADELGLS-------EKVRKRAIELLEEAYN 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L + VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIAGLMEEERRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|193599116|ref|XP_001950065.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Acyrthosiphon pisum]
Length = 491
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 25/271 (9%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQ---------AFDNYD------AQLYGRDGPT 45
M C+ CGS L D G +C+ CG V F+ D Q D
Sbjct: 1 MKCSDCGSLNLDSSD--GPTVCMDCGGVMDESHIVSEVQFEETDHGSRAVGQFLSSDSQA 58
Query: 46 GIYVHVGTA-GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
+ + G+A G +E ++ + I L+ L+L+ Q + F
Sbjct: 59 ANFHNFGSAFHHGMKQPSREMTQAKARRGIQVLSNSLNLSPQTLENACVYYNMALKRHFT 118
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G ++ A Y+ R++ + +VA + +ELG+ R+++ L L +P +D
Sbjct: 119 RGRKNALIYAASVYIACRMEGTMHMLLDVADASEVNAFELGKTYLRMMQTLTLTVPSLDP 178
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R + + T++ + + LL ++ + TGRRP + A L+
Sbjct: 179 SIFLMRFVNSLDFGDKTHI-------VYTTAMRLLQRMMRDSIHTGRRPSSLCGAALLIS 231
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ + +++ K VHC T +KR E
Sbjct: 232 GRMHDFNRTTDDIIKVVHCHHATLKKRLLEF 262
>gi|268562683|ref|XP_002646739.1| C. briggsae CBR-BRF-1 protein [Caenorhabditis briggsae]
Length = 751
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 29/270 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYVHVG---TAGTG 57
C++CGS + + G C +CG V ++ + Q R G +G + VG +A
Sbjct: 5 CSNCGSTEIDEDAARGDATCTTCGTVLEESIVVTENQFQERAGGSG-HTLVGQFVSAERA 63
Query: 58 SALNY--------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
+A N+ +E + K+IDEL +L + N G
Sbjct: 64 AANNFNGMGSQESREMTYAKGKKVIDELGSQLRINAHCMNTAFNFFKMCVSRNLTRGRNR 123
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---IVS 166
++ C Y+ RL++ + + + + V +V++LGR + + L + LP D +
Sbjct: 124 ASVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFISRSLRINLPATDPCLYII 183
Query: 167 MFERVIR-NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
F V+ + + L ++ RM++ W ++TGRRP + A L+
Sbjct: 184 RFACVLDFGDKQKEVVTLATRLVQRMKRD----------W-MSTGRRPTGICGAALLIAA 232
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ I ++ + VH + RKR E
Sbjct: 233 RSMNFNRTINDIVRVVHISESVIRKRLDEF 262
>gi|221482805|gb|EEE21136.1| transcription factor IIIB subunit, putative [Toxoplasma gondii GT1]
Length = 675
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 11/243 (4%)
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI-TDGEFGLGDWFPILIGACSYV 119
+ +E+ + I + +L L+ Q+ I + + + T F LG ++ AC Y
Sbjct: 61 DSREQTLQRGFNNIQSIAERLRLSSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYA 120
Query: 120 VMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+ R + + + VL +V LG++ +++ L+L++P VD ER +L
Sbjct: 121 ICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQVPHVDPSLFLERFACQMQLGD 180
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
T+ + + GV L+ + +++TGRRPM + A L+ + + E++A
Sbjct: 181 KTHT-------VAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAH 233
Query: 240 EVHCTVVTCRKRYKELLE-ALVKVAQALPWGKDVTVKNVLKNAPFVMNY--MEMKSMEKR 296
V + T +R +E + A ++A A D+ P + ++K M+K+
Sbjct: 234 IVRVSGPTVNRRLQEFKQTATAQLAVADFESTDLLSLPSQAQPPCRIKAYRRKLKLMQKK 293
Query: 297 KEE 299
+EE
Sbjct: 294 EEE 296
>gi|237840591|ref|XP_002369593.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|211967257|gb|EEB02453.1| transcription factor IIIB subunit, putative [Toxoplasma gondii
ME49]
gi|221503402|gb|EEE29100.1| transcription factor IIIB subunit, putative [Toxoplasma gondii VEG]
Length = 675
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 11/243 (4%)
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI-TDGEFGLGDWFPILIGACSYV 119
+ +E+ + I + +L L+ Q+ I + + + T F LG ++ AC Y
Sbjct: 61 DSREQTLQRGFNNIQSIAERLRLSSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYA 120
Query: 120 VMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+ R + + + VL +V LG++ +++ L+L++P VD ER +L
Sbjct: 121 ICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQVPHVDPSLFLERFACQMQLGD 180
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
T+ + + GV L+ + +++TGRRPM + A L+ + + E++A
Sbjct: 181 KTHT-------VAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAH 233
Query: 240 EVHCTVVTCRKRYKELLE-ALVKVAQALPWGKDVTVKNVLKNAPFVMNY--MEMKSMEKR 296
V + T +R +E + A ++A A D+ P + ++K M+K+
Sbjct: 234 IVRVSGPTVNRRLQEFKQTATAQLAVADFESTDLLSLPSQAQPPCRIKAYRRKLKLMQKK 293
Query: 297 KEE 299
+EE
Sbjct: 294 EEE 296
>gi|95007308|emb|CAJ20528.1| transcription factor IIIb subunit, putative [Toxoplasma gondii RH]
Length = 644
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 109/243 (44%), Gaps = 11/243 (4%)
Query: 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI-TDGEFGLGDWFPILIGACSYV 119
+ +E+ + I + +L L+ Q+ I + + + T F LG ++ AC Y
Sbjct: 61 DSREQTLQRGFNNIQSIAERLRLSSQQHISSAHRLYLMATQRNFTLGRRSVLVASACLYA 120
Query: 120 VMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG 179
+ R + + + VL +V LG++ +++ L+L++P VD ER +L
Sbjct: 121 ICRRERTPHLLIDFCDVLRTNVRALGQVFMKLLRVLHLQVPHVDPSLFLERFACQMQLGD 180
Query: 180 FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAK 239
T+ + + GV L+ + +++TGRRPM + A L+ + + E++A
Sbjct: 181 KTHT-------VAQTGVRLIQAMNRDWISTGRRPMGLCGAALLIAARYHNFQMNAEDIAH 233
Query: 240 EVHCTVVTCRKRYKELLE-ALVKVAQALPWGKDVTVKNVLKNAPFVMNYM--EMKSMEKR 296
V + T +R +E + A ++A A D+ P + ++K M+K+
Sbjct: 234 IVRVSGPTVNRRLQEFKQTATAQLAVADFESTDLLSLPSQAQPPCRIKAYRRKLKLMQKK 293
Query: 297 KEE 299
+EE
Sbjct: 294 EEE 296
>gi|403223081|dbj|BAM41212.1| transcription factor IIIb subunit [Theileria orientalis strain
Shintoku]
Length = 520
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 113/280 (40%), Gaps = 31/280 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYG------RDGPTGIYVHVGTAGT 56
C CGS + G L+C CG V +A L G + G T + + TAG+
Sbjct: 6 CNYCGSTQIEIYQHLGELLCQDCGAVL---QENAVLEGIQYSETQTGSTALGQFIPTAGS 62
Query: 57 GS-ALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFP 110
L Y +E+ I I + L L+ Q K + F +G
Sbjct: 63 RRLTLAYGSWQSREQVINRGYHNIQRIADYLRLSEQHVEAAKRIYLLAVQRNFTMGRNNL 122
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+ C Y + R + + + + +L V +G++ ++V L++ +P VD FER
Sbjct: 123 HVASCCLYTICRREKTPHLLIDFSDILQTPVKTIGQIFMKLVRMLHISVPNVDPSIFFER 182
Query: 171 VIRNSRLQGFTNLDESMLDRMRK---QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
L+ D ++K G ++ + ++ TGRRP + A LV
Sbjct: 183 FATQLHLK----------DNIQKIIVTGNRIIQAMNRDWICTGRRPTGLCGAALVVAARF 232
Query: 228 NGVSVKIENVAKEV---HCTVVTCRKRYKELLEALVKVAQ 264
+G+ + E V+ V H T++ +KE A +KV++
Sbjct: 233 HGIHLSAEAVSSVVRISHPTILKRLSEFKETSTAHLKVSE 272
>gi|303287710|ref|XP_003063144.1| cyclin-like superfamily protein [Micromonas pusilla CCMP1545]
gi|226455780|gb|EEH53083.1| cyclin-like superfamily protein [Micromonas pusilla CCMP1545]
Length = 840
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA-QLYGRDG----PTGIYVHVGTAGTG 57
C CG + +T ED G IC +CG V A + + DG G+ ++ A G
Sbjct: 9 CPRCGEREVTHEDDLGCEICAACGHVLTDRALTATREWHDDGGVATAGGVALYDDAAARG 68
Query: 58 SALN------------------YKEKKIYESNKLIDELTF---KLDLTGQRSIQIKNMID 96
L+ +++ + + F +L L + + ++
Sbjct: 69 GHLSAARATLAGNQASSVARRMFRDADATHLDDIARATRFAATQLKLPADAAADAEALVT 128
Query: 97 KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN 156
+ ++G +G GDW +L+ AC Y R + I +VA+ DV+ +GR+ R+
Sbjct: 129 RASEGRWGEGDWTTLLLAACVYATCRQRRLPIAIRDVAAACQADVFAVGRVYNRMRRMFA 188
Query: 157 LKLPEVD 163
+++P++D
Sbjct: 189 IEVPQLD 195
>gi|17531397|ref|NP_495526.1| Protein BRF-1 [Caenorhabditis elegans]
gi|351065110|emb|CCD66264.1| Protein BRF-1 [Caenorhabditis elegans]
Length = 759
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 111/270 (41%), Gaps = 29/270 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYVHVG---TAGTG 57
C++CGS + + G C +CG V ++ + Q R G +G + VG ++
Sbjct: 5 CSNCGSSEIDEDAARGDATCTACGTVLEESIVVTENQFQERAGGSG-HTLVGQFVSSERA 63
Query: 58 SALNY--------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
+A N+ +E + K+IDEL +L + N G
Sbjct: 64 AANNFNGMGSQESREMTYAKGRKVIDELGSQLRINSHCMNTAFNFYKMCVSRNLTRGRNR 123
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---IVS 166
++ C Y+ RL++ + + + + V +V++LGR + + L + LP D +
Sbjct: 124 SSVVAVCMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRINLPSTDPCLYIM 183
Query: 167 MFERVIR-NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
F V+ + + NL ++ RM++ W ++TGRRP + A L+
Sbjct: 184 RFACVLDFGDKQKEVVNLATRLVQRMKRD----------W-MSTGRRPTGICGAALLIAA 232
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ I ++ + VH + RKR E
Sbjct: 233 RSLNFNRSINDIVRVVHISEGVIRKRLDEF 262
>gi|429962700|gb|ELA42244.1| hypothetical protein VICG_00643 [Vittaforma corneae ATCC 50505]
Length = 394
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 127/316 (40%), Gaps = 47/316 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQ---------AFDNYDAQ--LYGRDGPTGIYVHV 51
C++CGS + GS+ C CG+V FD+ ++ LYG+ V+V
Sbjct: 4 CSNCGSLDFHTDAARGSVYCGECGMVHEENTVVSALQFDSTTSKTVLYGK------IVNV 57
Query: 52 GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPI 111
G+ + + Y N L + KL L + G
Sbjct: 58 ENTNIGT--QFIDSSYYIKNTL-KSICLKLSLGNDHAECAFRWYKLCLQYSLSKGKSILY 114
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+ AC Y+ R + + + ++ L D++++G++ ++ + L + +P +D R
Sbjct: 115 TLSACVYITCRQESTPHLLIDFSNELRIDLFKIGKVFLKIRQLLGIDIPLIDPSLYMHRF 174
Query: 172 -----IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+N + F+ L ++ RM+K +L GRRP A L+
Sbjct: 175 CSQLKFKNKEILNFSTL---LVSRMKKDWIL-----------EGRRPNNSCGAALLIASR 220
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE---ALVKVAQALPWGKDVTVKNVLKNAPF 283
+ I VA+ VH ++ T KR +E+ + A +++ Q + DV + +N P
Sbjct: 221 IFNEERDIAEVARAVHASIATINKRLEEMRDTESAELQIDQFM----DVWISKE-ENPPV 275
Query: 284 VMNYMEMKSMEKRKEE 299
++ + E+R EE
Sbjct: 276 FKKALQAEVSEERIEE 291
>gi|342319941|gb|EGU11886.1| Transcription factor TFIIIB complex subunit brf1 [Rhodotorula
glutinis ATCC 204091]
Length = 678
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 109/274 (39%), Gaps = 25/274 (9%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYV---HVGTAGT 56
M CTSCG ++ +C CG V + + +++ +G G V +VG T
Sbjct: 1 MICTSCGEDSVLEMTEHAQTVCTRCGTVLSENAIVSEIQFGETGSGAAMVQGSYVGADQT 60
Query: 57 GS------------ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
+ + +E+ + + I EL L L+ + + F
Sbjct: 61 RARAPGGFRQRGVQSQESREQTLANGRRRIMELATGLRLSEHLQNVATRFFNLAVNMSFT 120
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y R + + + + + +L +V+ LG ++V LN+ +P VD
Sbjct: 121 KGRRTQYVAAACLYAACRQANGTQMLIDFSDLLEINVFVLGSTYLKLVRQLNINIPVVDP 180
Query: 165 VSMFERVIRNSRLQGFTNLDESM-LDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
V + R + L F + + LD R L+N + ++ GRRP + A L+
Sbjct: 181 VIY---ITRFAALLDFGEETQKVALDATR-----LVNRMGRDWMQIGRRPSGICGACLLL 232
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+N IE V + V VT RKR E E
Sbjct: 233 AARMNNFRRSIEEVVQVVKIADVTLRKRLAEFKE 266
>gi|337283805|ref|YP_004623279.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
gi|334899739|gb|AEH24007.1| transcription initiation factor IIB [Pyrococcus yayanosii CH1]
Length = 300
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 109/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGWTEFIYDPERGEIVCAKCGYVVEENIIDMGPEWRAFDASQRERRSRTGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y + +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + D E+
Sbjct: 127 KHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ V +L A +
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRKAVEILEEAYR 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 KGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|308503040|ref|XP_003113704.1| CRE-BRF-1 protein [Caenorhabditis remanei]
gi|308263663|gb|EFP07616.1| CRE-BRF-1 protein [Caenorhabditis remanei]
Length = 783
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 29/270 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYVHVG---TAGTG 57
C++CGS + + G C CG V ++ + Q R G +G + VG +A
Sbjct: 5 CSNCGSAEIDEDAARGDATCTVCGTVLEESIVVTENQFQERAGGSG-HTLVGQFVSAERA 63
Query: 58 SALNY--------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
+A N+ +E + K+IDEL +L + N G
Sbjct: 64 AANNFNGMGSQESREMTYAKGRKVIDELGSQLRINAHCMNTAFNFFKMCVSRNLTRGRNR 123
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---IVS 166
++ C Y+ RL++ + + + + V +V++LGR + + L + LP D +
Sbjct: 124 SSVVAVCLYITCRLENTAHLLLDFSDVTQINVFDLGRNLNFIARSLRINLPATDPCLYII 183
Query: 167 MFERVIR-NSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
F V+ + + L ++ RM++ W ++TGRRP + A L+
Sbjct: 184 RFACVLDFGDKQKDIVTLATRLVQRMKRD----------W-MSTGRRPTGICGAALLIAA 232
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ I ++ + VH + RKR E
Sbjct: 233 RSMNFNRSINDIVRVVHISESVIRKRLDEF 262
>gi|392559045|gb|EIW52230.1| hypothetical protein TRAVEDRAFT_24512 [Trametes versicolor
FP-101664 SS1]
Length = 703
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSA-- 59
CT CG + + +G+ CV+CG VV+ + +G V G G+
Sbjct: 4 CTDCGGTVIEYDAAAGNGFCVNCGTVVEENTIVNEVTFGETSNGAAMVQGTFVGQGATRA 63
Query: 60 -----------LNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+E+ I +++ I ++ L L+ S+ + + +F G
Sbjct: 64 RMGGMFGNRGNTESREQTIANASRKIQQVATALRLSEVVSLAATRLYTLAVEHKFTKGRK 123
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 124 SMNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDPSHY 183
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L+ + +D +R L+ W +T GRRP + A L+ +
Sbjct: 184 ISRFA--ALLEFGDETHQVAMDAVR----LVQRFDRDW-MTKGRRPAGICGACLLLAARM 236
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N + + + V T +KR E
Sbjct: 237 NNFRRSVAEIVQVVKIADTTLKKRLDEF 264
>gi|170109264|ref|XP_001885839.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639110|gb|EDR03383.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 477
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 24/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQ---------AF---DNYDAQLYGR---DGPTGI 47
C CG + + +G+ C+ CG V AF N A + G G T
Sbjct: 1 CNDCGGTVIEYDHAAGNGFCIKCGTVVEENAIVNEVAFGETSNGAAMVQGSFVGQGATHA 60
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G G +E+ I K I + L L+ + M + +F G
Sbjct: 61 RIS-GPYGNRGNNESREQTIANGAKKIQSIANILRLSEVVCLAATRMYTLAVEHKFTKGR 119
Query: 108 WFPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 120 KSLNVVAVCLYVACRQKETRNYMLIDFSDLLQVNVFELGHTYLQLVQTLNLRLPLVDPSH 179
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R + L F DE+ ++ V L+ + ++T GRRP + A L+
Sbjct: 180 YISRF---AALLEFG--DET--HKVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLAAR 232
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N +E + + V T +KR E
Sbjct: 233 MNNFRRSVEEIVQVVKIADTTLKKRLDEF 261
>gi|384247443|gb|EIE20930.1| cyclin-like protein [Coccomyxa subellipsoidea C-169]
Length = 496
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 102/270 (37%), Gaps = 39/270 (14%)
Query: 14 EDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVH-----------------VGTAGT 56
+D +G C +CG V + ++ G G+ G G
Sbjct: 16 DDANGYQCCTTCGAVLDEGGFSTEVTFTKGAGGVSTADGQFLSDAAASRGLARISGGRGY 75
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQR-SIQIKNMIDKIT-DGEFGLGDWFPILIG 114
G L+ EK + + + +L +L + + +++ + + K+ F G ++
Sbjct: 76 GYQLDSHEKSLNKGRSEVTQLVDRLRIAPRDDTVEAASRLYKLALSRNFTRGRRTQLVAA 135
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL---------PEVDIV 165
AC Y+V R D K + + + L +V+ LG + + + L L+ P + +
Sbjct: 136 ACLYIVCRQDSKPFMLIDFSDALQVNVFTLGAVFLHLCKLLRLEEHPMFQRPVDPSLYLH 195
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R+ N + TN ++ M++ W + TGRRP + A L
Sbjct: 196 RFANRLCVNDKFHAVTNTALRLVASMKRD----------W-MQTGRRPSGICGAALFIAA 244
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++GV +V VH T KR KE
Sbjct: 245 HIHGVEKSKRDVVNIVHVGEATLAKRVKEF 274
>gi|348671349|gb|EGZ11170.1| hypothetical protein PHYSODRAFT_347658 [Phytophthora sojae]
Length = 672
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 103/277 (37%), Gaps = 24/277 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGI--------------- 47
C +C + D+SG +CVSCG + +N + + ++ G
Sbjct: 6 CPTCSCTEIDVVDVSGEAVCVSCGTILEENNIVSSIEFQESGGGAHSVVGQFVSATASKS 65
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
Y ++GT+G L + + K I ++ L L + F G
Sbjct: 66 YGNIGTSGRNYGLESRANTLANGKKKIRQIAGMLRLGDHYVDSAFRLFALALQRNFTHGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+I AC Y+V R + + + + L +VY LG + + + L + LP +D
Sbjct: 126 KTQTVIAACLYIVCRRERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIHLPLIDPSLY 185
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R G T+ + + L+ + ++ TGRRP + A L+
Sbjct: 186 IHRFASQLNFAGKTH-------SIATTALRLVATMKRDWIETGRRPSGICGAALLIAARS 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264
V + +V V+ T ++R E +L AQ
Sbjct: 239 QSVMCSLHDVMDVVNIGERTLKQRLYEF--SLTPTAQ 273
>gi|337283539|ref|YP_004623013.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
gi|334899473|gb|AEH23741.1| putative transcription initiation factor IIB [Pyrococcus yayanosii
CH1]
Length = 322
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 112/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C +CGS L + G + C +CG + + FD+ + R G P I +
Sbjct: 11 CPNCGSTNLVYDPYRGEIYCQNCGEIIQENIIDLRPDYRIFDSNQWKKRSRIGAPESILL 70
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y + +D +T +L L
Sbjct: 71 HDKGLSTDIGIDRSLTGLMREKMYRLRRWQSRLRVSDAAERNLAFALSELDRITAQLKLP 130
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + D E+
Sbjct: 131 KHVEEEAARLYREAVRRGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDISRVDKKEI 190
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ V +L A +
Sbjct: 191 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRKAVEILEEAYR 242
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 243 KGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEIARVTEVTVRNRYKELVEKL 297
>gi|330796592|ref|XP_003286350.1| hypothetical protein DICPUDRAFT_6794 [Dictyostelium purpureum]
gi|325083701|gb|EGC37147.1| hypothetical protein DICPUDRAFT_6794, partial [Dictyostelium
purpureum]
Length = 426
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 110/265 (41%), Gaps = 25/265 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--GIYVHVGTAGTGSAL 60
C CGS++ + GS++C CG ++ N +++ D + G +V T TGS+
Sbjct: 1 CKLCGSESFATSN-DGSVVCTDCGTIKDSANIVSEISFGDNSSIVGTFVS-ATRRTGSSY 58
Query: 61 ------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIG 114
+ + + + + +DE+ L + + + + F G ++
Sbjct: 59 RSLGGRDSRAMSLENARRRLDEIATSLKIRTHHIDSAQRSFELAMENNFTKGRKTKLVAA 118
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
+C YVV R + + + + VL +V+ L ++++ LN++LP VD R +
Sbjct: 119 SCLYVVCRREKTPHLLIDFSEVLQVNVFTLAHTFLQLIKLLNIQLPIVDPSLFIYRFSSS 178
Query: 175 ----SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
S+ + T ++ RM++ ++ TGR+P + A L +++G
Sbjct: 179 LEFGSQTKEVTATANKLVARMKRD-----------WMCTGRKPSGICGAALYIASKIHGF 227
Query: 231 SVKIENVAKEVHCTVVTCRKRYKEL 255
++ + V T R +E
Sbjct: 228 KRSMKEIVHIVKIGESTLLARLEEF 252
>gi|256084250|ref|XP_002578344.1| transcription initiation factor brf1 [Schistosoma mansoni]
gi|353229135|emb|CCD75306.1| putative transcription initiation factor brf1 [Schistosoma mansoni]
Length = 770
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 107/260 (41%), Gaps = 12/260 (4%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG--TAGTGS 58
M C CG L + LIC+ CG+V + +++ + TG VG +
Sbjct: 1 MKCKHCGCSNLEEDRARADLICLDCGMVLGENVISSEVEFVETSTGQCAAVGRFVSDESQ 60
Query: 59 ALNYKEKKIYESNKL---IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGA 115
A N+KE + NK ID + +L L + G +
Sbjct: 61 AGNFKESRQATENKARRRIDTICGQLRLGNDTAASAFRYYQSALFRGLTRGRSAFTVAAG 120
Query: 116 CSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNS 175
C Y+ R +L + +++ + +VY LGR+ + + LNL +PE+D +R S
Sbjct: 121 CIYLAARQLRVNLMLLDLSDAVGVNVYVLGRVYADLKKRLNLAIPEMDPCIYIDRFA--S 178
Query: 176 RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIE 235
+L+ + MR LL K ++ TGRRP + A L+ ++ + E
Sbjct: 179 QLEFGDKVSTVATTAMR-----LLQRMKKDWIATGRRPSGLAAAALLVAARIHEFNRTEE 233
Query: 236 NVAKEVHCTVVTCRKRYKEL 255
+VA+ + T RKR +E
Sbjct: 234 DVARIARISQSTARKRLEEF 253
>gi|390600638|gb|EIN10033.1| cyclin-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 584
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 108/271 (39%), Gaps = 25/271 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP-----TGIYVHVGT--- 53
C CG + + +G+ CV+CG V + +++ +G G YV G
Sbjct: 6 CAECGGSVIEYDAAAGNGFCVACGTVVEENTIVSEVTFGETSSGAAMVQGSYVAQGATRA 65
Query: 54 ------AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
G +E+ I +++ I + L L+ + + +F G
Sbjct: 66 RMGGFFGNRGGDGESREQTIANASRKIQSVAGILRLSESICHAATRLYTLAVEHKFTKGR 125
Query: 108 WFPILIGACSYVVMRLDD-KSLPISEVASVLNC--DVYELGRMITRVVEFLNLKLPEVDI 164
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 126 KSMNVVAVCLYVACRQKETRNYMLIDFSDLLQASVNVFELGHTYLQLVQTLNLRLPLVDP 185
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
SR E ++ V L+ + ++T GRRP + A L+
Sbjct: 186 SHYI------SRFAALLEFGEET-HQVATDAVRLVQRFDRDWMTRGRRPAGICGAALLLA 238
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N IE + + V VT RKR +E
Sbjct: 239 ARMNNFRRSIEEIVQVVKIADVTLRKRMEEF 269
>gi|403412356|emb|CCL99056.1| predicted protein [Fibroporia radiculosa]
Length = 715
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 107/268 (39%), Gaps = 22/268 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGS--- 58
CT CG + + +G+ CV CG VV+ + +G V G G+
Sbjct: 30 CTDCGGTVIEYDAAAGNGFCVQCGTVVEENAIVNEVAFGETSTGAAMVQGSFVGQGATHA 89
Query: 59 ----------ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+ +E+ I +++ I ++ + L+ + + + +F G
Sbjct: 90 RMGGPFGNRGSSESREQTIANASRKIQQVANAMHLSEVVCLSATRLYTLAVEHKFTKGRK 149
Query: 109 FPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C YV R + ++ + + + +L +V+ELG ++V+ LNL+LP VD
Sbjct: 150 SMNVVAVCLYVACRQKETRNYMLIDFSDMLQVNVFELGHTYLQLVQTLNLRLPLVDPSHY 209
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R + L+ + LD R L+ W +T GRRP + A L+ +
Sbjct: 210 VSRFA--ALLEFGDETHQVALDATR----LVARFDRDW-MTRGRRPAGICGACLLLAARM 262
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N + + + V T +KR E
Sbjct: 263 NNFRRSVAEIVQVVKIADTTLKKRLDEF 290
>gi|301095599|ref|XP_002896899.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
gi|262108546|gb|EEY66598.1| transcription factor IIIB, putative [Phytophthora infestans T30-4]
Length = 589
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 103/277 (37%), Gaps = 24/277 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTG---------------I 47
C +C + D+SG +CVSCG + +N + + ++ G
Sbjct: 6 CPTCSCTEIDVVDVSGEAVCVSCGTILEENNIVSSVEFQESGGGAHSVVGQFVSATASKA 65
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
Y ++GT+G + + + K I ++ L L + F G
Sbjct: 66 YGNIGTSGRNYGIESRANTLANGKKKIRQIAGMLRLGDHYVDSAFRLFALALQRNFTHGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+I AC Y+V R + + + + L +VY LG + + + L + LP +D
Sbjct: 126 KTQTVIAACLYIVCRRERSPHLLIDFSDKLQINVYVLGGVFLKFCKLLQIHLPLIDPSLY 185
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R G T+ + + L+ + ++ TGRRP + A L+
Sbjct: 186 IHRFASQLNFAGKTH-------SIATTALRLVATMKRDWIETGRRPSGICGAALLIAARS 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264
V + +V V+ T ++R E +L AQ
Sbjct: 239 QSVMCSLHDVMDVVNIGERTLKQRLYEF--SLTPTAQ 273
>gi|379335328|gb|AFD03312.1| transcription factor TFIIB cyclin-related protein [uncultured
archaeon W4-93a]
Length = 307
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 111/301 (36%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG + + +D SG L C CG V + F N ++ T + +H
Sbjct: 14 CPSCGKRKIVTDDTSGELFCAYCGFVINEKLEDTGAEWRTFSNEESSRTRVGAGTSLTMH 73
Query: 51 -------VGTA---GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
+G A TG L+ K E + D T + Q N +DK+ D
Sbjct: 74 DMGLSTIIGKANKDSTGKPLSGSMKSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKD 133
Query: 101 GEFGLGD----------------------WFPILIGACSYVVMRLDDKSLPISEVASVLN 138
+ L D L+ AC Y R + + ++A+ +N
Sbjct: 134 -KLALADVVVEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDMANGIN 192
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R + L LK+P VD V SR+ +L E + +++ +++
Sbjct: 193 IRRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIADLSE----KSKRKAIII 242
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
LN A + G+ PM + A L +G S + ++ T VT R R L +
Sbjct: 243 LNKAKDVGMVAGKDPMGIAAAALYLSCISSGESKSQKEISIASGVTEVTIRNRCAGLRQL 302
Query: 259 L 259
L
Sbjct: 303 L 303
>gi|341582974|ref|YP_004763466.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810632|gb|AEK73789.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 303
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 115/303 (37%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L + G ++C CG V +AFD R G P + +
Sbjct: 7 CPVCGSDKLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAFDPDQRAKRARTGAPMTLMI 66
Query: 50 HVGTAGTGSALNYKEK------------------KIYESNKLIDE-----LTFKLDLTGQ 86
H G + +++++K ++++ I++ L F L +
Sbjct: 67 H--DKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 87 RSIQIK----------NMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ Q++ ++ K + G ++ A Y R++ + E+A+V
Sbjct: 125 MAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAV 184
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+GR + LNL L + +R N+ R +K+
Sbjct: 185 SKVTKKEIGRSYRFLARGLNLNLRPTSPIEYVDR------FGDALNVSA----RTKKRAK 234
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+L+ A+K +T+G+ P + A L L G VA+ H T VT R RYKEL+
Sbjct: 235 EILHEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELV 294
Query: 257 EAL 259
E L
Sbjct: 295 EKL 297
>gi|291000995|ref|XP_002683064.1| transcription factor [Naegleria gruberi]
gi|284096693|gb|EFC50320.1| transcription factor [Naegleria gruberi]
Length = 654
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD----IVS 166
I+ AC Y V+R D + + + + + DV+ +G ++ LN KLP V+ +
Sbjct: 147 IVAAACLYFVLRQDKQPYMLMDFSESMKTDVFLIGHCFLDLMTALNFKLPAVEPFFYVRR 206
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R++ NS G N ++ ++R+ + + L+ + ++ TGRRP + A L+
Sbjct: 207 FANRLLLNS---GKENANQEAINRVIQTTLKLIASMKRNWIQTGRRPAGICAAALLVAAR 263
Query: 227 LNGV-SVKIENVAKEVHCTVVTCRKRYKEL 255
++G ++ ++V K V T KR E
Sbjct: 264 IHGFKNISKQDVVKVVKICTATLTKRLMEF 293
>gi|209877443|ref|XP_002140163.1| transcription factor IIIB subunit BRF-1 [Cryptosporidium muris
RN66]
gi|209555769|gb|EEA05814.1| transcription factor IIIB subunit BRF-1, putative [Cryptosporidium
muris RN66]
Length = 611
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGT-G 57
C C S ++ + G IC +CG V + + G VG ++G G
Sbjct: 5 CPQCSSLSIETHEGRGETICTNCGTVLEENTMVEGFQFSESSNGSIQMVGHFVPSSGVRG 64
Query: 58 SALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
AL Y +E + + + +L L+ + + F +G +
Sbjct: 65 FALVYGNRESREHVLQRGYHNLQRIADQLHLSASHIESAQRVFLMAVQRNFTIGRNNMYV 124
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
AC Y + R + + + + VL V LG++ +++ L L +P +D ER
Sbjct: 125 ASACLYAICRREKTPHMLIDFSDVLQAPVKVLGQVFMKLLRLLRLHVPNIDPSMFMERFA 184
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L T+ + GV ++ + ++TTGRRP + A L+ +G+ V
Sbjct: 185 AQMNLGNKTH-------SIAATGVRIVQALTRDWITTGRRPTGLCGAALLISARYHGIPV 237
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A+ V + T KR E
Sbjct: 238 SSNEIAQIVRISSPTLLKRLAEF 260
>gi|402221210|gb|EJU01279.1| hypothetical protein DACRYDRAFT_107836 [Dacryopinax sp. DJM-731
SS1]
Length = 738
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 115/267 (43%), Gaps = 20/267 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C CG + +G+ C++CG V + A++ + G + HV T +
Sbjct: 20 CPECGGVRFDFDASAGASFCLTCGCVTEENTIVAEVTFGETSGGAAIVQGSHVAAGATRA 79
Query: 59 ALNYK----------EKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
+N E+ +++ +++ L L +T + + F G
Sbjct: 80 KINAPWGRQGNFESMEQAKHKARQILQGLKRHLGITETVIGYAERWWILAYEMGFTKGRR 139
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
++IGAC Y+ +R + + + +++ +L +V++LG + ++V+ L +K +D+V
Sbjct: 140 SLLVIGACCYIAVRQHQRPIMLIDLSDLLQANVFDLGNVYLQLVQLLPVK--NLDLVDPE 197
Query: 169 ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
+ R S+L F E ++R V +++ + +L TGRRP + A L+ +N
Sbjct: 198 FYIERFSKLLEFGEDRE----KIRDDAVRIVHRFKRDWLYTGRRPSGICGAALLLAARMN 253
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + + V T +KR E
Sbjct: 254 NYRRSVLEIVQVVKIADTTLKKRLVEF 280
>gi|66358198|ref|XP_626277.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
gi|46227281|gb|EAK88231.1| cyclin domain protein [Cryptosporidium parvum Iowa II]
Length = 648
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGT-G 57
C C S ++ + G IC +CG V + L + G VG ++G G
Sbjct: 8 CPQCSSASIEVHEGRGETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 67
Query: 58 SALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
A+ Y +E + + + +L L+ + + F +G +
Sbjct: 68 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSHIESAQRVFLMAVQRSFTIGRNNMHV 127
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
AC Y + R + + + + VL V LG++ +++ L L +P +D ER
Sbjct: 128 ASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLHVPNIDPSMFMERFA 187
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+L T+ + GV ++ + ++TTGRRP + A L+ +G+ V
Sbjct: 188 AQMKLGEKTHA-------VAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 240
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A+ V + T KR E
Sbjct: 241 SSSEIAQIVRISSPTLLKRLAEF 263
>gi|159111980|ref|XP_001706220.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
gi|29293103|gb|AAO72320.1| transcription factor IIB-related protein [Giardia intestinalis]
gi|157434314|gb|EDO78546.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia lamblia ATCC
50803]
Length = 476
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 127/306 (41%), Gaps = 43/306 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGT 53
+ C C S + ++ + C +CG+V D Y Q G G ++ T
Sbjct: 3 ISCPFCLSNSTITDEGQAKVFCGNCGLV-IMDTLIVNDLIYQDQ-NGVSTVMGNFISANT 60
Query: 54 AGTGSALNYKE-KKIYESNKLIDELTFKLDLTGQRSIQIKNMI-DKITDGEFGLGDWFPI 111
+ T +L K K E+ +I L ++L + S N + DK T G +
Sbjct: 61 SSTARSLAIKHFSKELETIAMI--LNLPMELVRKASDYYANCLRDKATRGRRN-----NL 113
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
L A Y+V R + S + + A LN V+ L + I + N+KLP D+ S+ R
Sbjct: 114 LAAALLYIVGRQHNLSHLLIDYADALNVSVFTLNKYIQPFLRQYNIKLPYQDLESLLPRF 173
Query: 172 I-------------RNSRLQGFTNLDESMLDRMRKQGVL----LLNCAVKWFLTTGRRPM 214
+ N F N+ + +D++R+ ++ +L + + TGR P
Sbjct: 174 VDSILKEEFTTAFQDNRDCMLFANIHITSVDQLREHTLVVSKYILKASTAINIHTGRLPS 233
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV 274
++ A + ++L + I +++ V C+ T +R +E+ Q+ +T+
Sbjct: 234 GLLGASIFVALKLLNYGIPIHRISRCVFCSPDTIARRLQEM--------QSSELFAKLTI 285
Query: 275 KNVLKN 280
+VL+N
Sbjct: 286 GDVLRN 291
>gi|399218262|emb|CCF75149.1| unnamed protein product [Babesia microti strain RI]
Length = 592
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 102/266 (38%), Gaps = 23/266 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTG-------IYVHVGTAG 55
C C + + D G +C++CG V L + P+G VG
Sbjct: 8 CKYCAFERIEYCDEQGETLCINCGAVLEERGMVELLQYSETPSGGSAIVGQFLPTVGCRH 67
Query: 56 TGSALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
A K+ + I I + L L+ Q + + F +G +
Sbjct: 68 VTLAFGSKQSRGQIIQRGYSNIQRIAGYLHLSTQHVEAAQRIYLLAVQRSFTIGRNNLHV 127
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
C Y++ R + + + + VL V LG++ ++V L++ +P VD FER
Sbjct: 128 AACCLYIICRREKTPHLLIDFSDVLQTPVKILGQIFMKLVRLLHISVPNVDPSIFFERFA 187
Query: 173 RNSRLQGFTNLDESMLDRMRK---QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
+++ D++R+ G+ L+ + +L TGRRP + A LV +G
Sbjct: 188 SQLKIK----------DKIRQITATGIRLIQAMDRDWLCTGRRPTGLCGAALVVASRYHG 237
Query: 230 VSVKIENVAKEVHCTVVTCRKRYKEL 255
V + VA V + T KR E
Sbjct: 238 VPLSESAVANVVRISNYTIIKRLSEF 263
>gi|323508609|dbj|BAJ77198.1| cgd5_3540 [Cryptosporidium parvum]
gi|323510533|dbj|BAJ78160.1| cgd5_3540 [Cryptosporidium parvum]
Length = 646
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGT-G 57
C C S ++ + G IC +CG V + L + G VG ++G G
Sbjct: 6 CPQCSSASIEVHEGRGETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 58 SALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
A+ Y +E + + + +L L+ + + F +G +
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSHIESAQRVFLMAVQRSFTIGRNNMHV 125
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
AC Y + R + + + + VL V LG++ +++ L L +P +D ER
Sbjct: 126 ASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLHVPNIDPSMFMERFA 185
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+L T+ + GV ++ + ++TTGRRP + A L+ +G+ V
Sbjct: 186 AQMKLGEKTHA-------VAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A+ V + T KR E
Sbjct: 239 SSSEIAQIVRISSPTLLKRLAEF 261
>gi|333986561|ref|YP_004519168.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
gi|333824705|gb|AEG17367.1| Transcription initiation factor IIB [Methanobacterium sp. SWAN-1]
Length = 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 110/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK L + G ++C +CG+V +AFD+ R G Y
Sbjct: 44 CPECGSKKLINDHERGEVVCGACGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 102
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 103 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 162
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + + E+A V
Sbjct: 163 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 222
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 223 RVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EVQSKAID 272
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A+ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 273 IIEQAMAKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 332
Query: 258 AL 259
L
Sbjct: 333 QL 334
>gi|67622824|ref|XP_667830.1| transcription factor IIIb subunit [Cryptosporidium hominis TU502]
gi|54658996|gb|EAL37598.1| transcription factor IIIb subunit [Cryptosporidium hominis]
Length = 646
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGT-G 57
C C S ++ + G IC +CG V + L + G VG ++G G
Sbjct: 6 CPQCSSASIEVHEGRGETICTNCGTVLEENTMVEGLQFSECSNGSMQMVGHFVPSSGVRG 65
Query: 58 SALNY-----KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
A+ Y +E + + + +L L+ + + F +G +
Sbjct: 66 FAMVYGNRESREHVLQRGYHNLQRIADQLRLSSSHIESAQRVFLMAVQRSFTIGRNNMHV 125
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
AC Y + R + + + + VL V LG++ +++ L L +P +D ER
Sbjct: 126 ASACLYAICRREKTPHMLIDFSDVLQTPVKVLGQVFMKLLRLLRLHVPNIDPSMFMERFA 185
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+L T+ + GV ++ + ++TTGRRP + A L+ +G+ V
Sbjct: 186 AQMKLGEKTHA-------VAATGVRIVQALTRNWITTGRRPTGLCGAALLISARYHGIPV 238
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A+ V + T KR E
Sbjct: 239 SSSEIAQIVRISSPTLLKRLAEF 261
>gi|124809652|ref|XP_001348643.1| transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
gi|23497541|gb|AAN37082.1|AE014824_1 transcription factor IIIb subunit, putative [Plasmodium falciparum
3D7]
Length = 748
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/320 (19%), Positives = 129/320 (40%), Gaps = 21/320 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGTGS 58
C +C S + + G +IC+ CG V + L + G VG ++G S
Sbjct: 18 CKNCLSSDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGNKS 77
Query: 59 AL------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ +E + + I ++ L L+ Q + + F +G +
Sbjct: 78 FILSWGIRESREISLQKGYVNIQKIADHLHLSSQHIEAAQRIYLMALQRNFTMGRNNSYV 137
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L++ +P +D ER
Sbjct: 138 AASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHINVPNIDPSLFLERFA 197
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + ++ G+ L+ + +++TGRRP + A L+ ++G+ +
Sbjct: 198 HKLNLKN-------DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGAALLISTRMHGICI 250
Query: 233 KIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNA--PFVMNYMEM 290
+A V + T KR E +A + K +++ ++ N P V+ Y +
Sbjct: 251 NSNTIADIVRISNPTIIKRLAEFKNTSTAQIKASEFDK-ISINDIPSNTIPPCVIYYNKK 309
Query: 291 KSMEKRKEERDGLN-CGGID 309
K + E+ L+ C +D
Sbjct: 310 KFKDNISEKNKTLSLCDDVD 329
>gi|325960055|ref|YP_004291521.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325331487|gb|ADZ10549.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 331
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 111/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + G ++C +CG+V +AFD+ R G Y
Sbjct: 35 CPECGSEKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKRTRVGAPITYT- 93
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 94 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 153
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + + E+A V
Sbjct: 154 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 213
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 214 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSG----------EVQSKAIE 263
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 264 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 323
Query: 258 AL 259
L
Sbjct: 324 QL 325
>gi|325959508|ref|YP_004290974.1| transcription initiation factor iiB [Methanobacterium sp. AL-21]
gi|325330940|gb|ADZ10002.1| Transcription initiation factor IIB [Methanobacterium sp. AL-21]
Length = 325
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 111/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ + + G + C +CG+V +AFDN R G Y
Sbjct: 29 CPECGSEQIINDPERGEVACGACGLVIDDNIMDMGPEWRAFDNEQRDKRTRVGAPMTYT- 87
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 88 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 147
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + + E+A V
Sbjct: 148 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 207
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 208 RVGKKEVGRTYRFLTRELNIKLPPTSPVDYIPRFASELNLSG----------EVQSKAIE 257
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++N A+ LT+G+ P V A L L G +VA+ T VT R RYKEL E
Sbjct: 258 IINNAMAKGLTSGKGPTGVAAAALYIASVLLGERKTQRDVAEVAGVTEVTIRNRYKELSE 317
Query: 258 AL 259
+
Sbjct: 318 EI 319
>gi|443896379|dbj|GAC73723.1| transcription initiation factor TFIIIB, Brf1 subunit [Pseudozyma
antarctica T-34]
Length = 763
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 116/294 (39%), Gaps = 60/294 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQ--------------------------AFDNY 34
M CT+CGS + D +C CGVV A D
Sbjct: 1 MKCTNCGSSAIDYAD--NQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQA 58
Query: 35 DAQLYGRDGPTGIYVH------VGTAGTG-----SALNYKEKKIYESNKLIDELTFKLD- 82
A++ G G G YV + A TG SAL + +++ + T LD
Sbjct: 59 RARVSGPGGFRGGYVSESREMTISNARTGIHNMASALRIPS---HVADRALRFFTLALDG 115
Query: 83 -LTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDV 141
+ + KN + LG + +C YV R++ + + + A + +V
Sbjct: 116 GASAATGDEPKNYV---------LGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNV 166
Query: 142 YELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNC 201
+ LGR +++ LNL+LP +D S++ + R + L F DE+ ++ L++
Sbjct: 167 FILGRSYLKLIRVLNLRLPLID-PSIY--IARFAALLDFG--DETQ--KVAYDASRLVSR 219
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
K ++T GRRP + A L+ +N + V + V VT R R E
Sbjct: 220 FQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLRARLDEF 273
>gi|340344517|ref|ZP_08667649.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519658|gb|EGP93381.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGQGTLVTDATTGENFCGKCGFVITDKVDESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGHASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD V R+ + L ++ ++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLS----------EKTKRAATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 240 LQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|42557795|emb|CAF28768.1| putative transcription initiation factor TFIIB [uncultured
crenarchaeote]
Length = 304
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 117/301 (38%), Gaps = 62/301 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + ++ SG + C +CG V +AF + + R G PT + +
Sbjct: 12 CPRCGKGPMVTDNSSGEMFCGNCGFVVTERIEETGPEWRAFSKEEHEDRSRAGIPTSLAM 71
Query: 50 H----------VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H V +G L+ K E + D + + + Q + +D++
Sbjct: 72 HDMGLATIIGPVDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 131
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSL-------------------------PISEVA 134
D + +GD +I +YV + +K L + ++A
Sbjct: 132 D-KLAVGD---AVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIA 187
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
N ++ R ++ L+LK+P VD V R+ S L ++ +++
Sbjct: 188 HASNIKKKDVARCYRLLIRELDLKMPVVDPVKCVARIASKSGLS----------EKTKRK 237
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+ +L A + ++ G+ PM + A L +NG + ++VA+ T VT R RYK
Sbjct: 238 ALEILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKG 297
Query: 255 L 255
L
Sbjct: 298 L 298
>gi|408382816|ref|ZP_11180358.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
gi|407814618|gb|EKF85243.1| transcription initiation factor IIB [Methanobacterium formicicum
DSM 3637]
Length = 307
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 111/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + G ++C +CG+V +AFD+ R G Y
Sbjct: 11 CPECGSEKLINDHERGEIVCGACGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 69
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 70 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 129
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + + E+A V
Sbjct: 130 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 189
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 190 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSG----------EVQSKAIE 239
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 240 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 299
Query: 258 AL 259
L
Sbjct: 300 QL 301
>gi|253743265|gb|EES99717.1| Transcription factor IIIB 70 kDa subunit BRF [Giardia intestinalis
ATCC 50581]
Length = 477
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 43/306 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGT 53
+ C C S + ++ + C +CG+V D Y Q G G ++ T
Sbjct: 3 ISCPFCFSNSTITDEGQAKVFCGNCGLV-IMDTLIVNDLIYQDQ-NGVSTVMGNFISANT 60
Query: 54 AGTGSALNYKE-KKIYESNKLIDELTFKLDLTGQRSIQIKNMI-DKITDGEFGLGDWFPI 111
+ +L K K E+ ++ L ++L + S N + DK T G +
Sbjct: 61 SSAARSLAIKHFSKELETIAMV--LNLPMELVRKASDYYANCLRDKATRGRRN-----NL 113
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
L A Y+V R + S + + A LN V+ L + I + N+KLP D+ S+ R
Sbjct: 114 LAAALLYIVGRQHNLSHLLIDYADALNVSVFTLNKYIQPFLRQYNIKLPYQDLESLLPRF 173
Query: 172 I-------------RNSRLQGFTNLDESMLDRMRKQGV----LLLNCAVKWFLTTGRRPM 214
+ N F N+ + D++R+ + +L ++ + TGR P
Sbjct: 174 VDSILKEEFTTVFQDNRDCMLFANIHIASTDQLREHTLAVSKYILKASIAINIHTGRLPS 233
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV 274
++ A + ++L + I VA+ V C+ T +R +E+ Q+ +T+
Sbjct: 234 GLLGASIFVALKLLNYGIPIHRVARCVFCSPDTIARRLQEM--------QSSELFTKITI 285
Query: 275 KNVLKN 280
+VL+N
Sbjct: 286 GDVLRN 291
>gi|386875527|ref|ZP_10117689.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806627|gb|EIJ66084.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 112/301 (37%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGQGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD V R+ + L ++ +++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLS----------EKTKRKATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 240 LQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKLA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|82793708|ref|XP_728148.1| transcription factor IIIb 70 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23484353|gb|EAA19713.1| transcription factor iiib 70 kDa subunit [Plasmodium yoelii yoelii]
Length = 756
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 113/278 (40%), Gaps = 17/278 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGTGS 58
C +C S + + G +IC+ CG V + L + G VG ++GT S
Sbjct: 4 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 63
Query: 59 AL------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ +E + + I ++ L L+ Q + + F +G +
Sbjct: 64 FMLSWGIRESREISLQKGYINIQKIADNLHLSNQHIEAAQRIYLMALQRNFTMGRNNSYV 123
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L++ +P +D ER
Sbjct: 124 AASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHISVPNIDPSLFLERFA 183
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + ++ G+ L+ + +++TGRRP + A L+ ++G++V
Sbjct: 184 YKLNLKN-------DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINV 236
Query: 233 KIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGK 270
+A+ V + T KR E + +A + K
Sbjct: 237 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEFDK 274
>gi|294949376|ref|XP_002786166.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
gi|239900323|gb|EER17962.1| transcription initiation factor brf1, putative [Perkinsus marinus
ATCC 50983]
Length = 597
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 108/267 (40%), Gaps = 21/267 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLY-----GRDGPTGIYV----HVGT 53
C CGS + +G +C+ CG V + +L R G G V G
Sbjct: 7 CPHCGSLDSETDSRTGQTVCLGCGEVLEENRVVCELSFTQSGDRTGVNGQSVPWLGGGGR 66
Query: 54 AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILI 113
G S+ N + + + I+ + +L+L + K + F G ++
Sbjct: 67 RGGYSSENSRLLTLQRGSTRIEWIGNRLELPTSTMDEAKRLFSLAAQRNFTAGRKTSVVA 126
Query: 114 GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN----LKLPEVDIVSMFE 169
AC Y+V R D + + + VL+ V E+G+M ++V L+ L +P +D E
Sbjct: 127 AACLYIVCRRDRTPYLLIDFSDVLHISVREIGQMYMKLVRLLSLDKVLDIPVIDPSMFME 186
Query: 170 RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
R + L N ++ + L+ + ++ TGRRP + A L+ +G
Sbjct: 187 RFSSHLGLGDKQN-------QVVHTAIRLIQLMSRDWICTGRRPTGLCGAALLIAARYHG 239
Query: 230 VS-VKIENVAKEVHCTVVTCRKRYKEL 255
V V +VA V VT ++R EL
Sbjct: 240 VEDVTANSVAGVVRIGAVTLKRRLYEL 266
>gi|407464509|ref|YP_006775391.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047697|gb|AFS82449.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 112/301 (37%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGKGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTAAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDSVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD V R+ + L ++ +++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLS----------EKTKRKATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 240 LQTAEEQKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|161528132|ref|YP_001581958.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339433|gb|ABX12520.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C +CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGKGTLVTDPNTGENFCGACGFVITEKVEESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD + R+ + L ++ +++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPIKCISRIASKAGLS----------EKTKRKATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 240 LQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|18977059|ref|NP_578416.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
DSM 3638]
gi|18892698|gb|AAL80811.1| transcription initiation factor IIB chain b homolog [Pyrococcus
furiosus DSM 3638]
Length = 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 113/273 (41%), Gaps = 29/273 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C S+ L + G + C CG + A + D++L + I + G +
Sbjct: 17 CPYCKSRDLVYDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIG-----EF 71
Query: 63 KEKKIYE----SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF----------GLGDW 108
+KIY K+ E L ++ R + + K + E GL
Sbjct: 72 TREKIYRLRKWQKKISSERNLVLAMSELRRLSGMLKLPKYVEEEAAYLYREAAKRGLTRR 131
Query: 109 FPI--LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
PI + AC Y RL ++E+AS + E+ + +V LNL P++ +
Sbjct: 132 IPIETTVAACIYATCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNL-TPKMLLAR 190
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ V F + E + +R+R++ V +L A + +T+G+ P+ +V A L
Sbjct: 191 PTDYV------DKFADELE-LSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASL 243
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G + +A+ + +T R RYKEL+ L
Sbjct: 244 LEGERRSQKEIARVTGVSEMTVRNRYKELVMKL 276
>gi|428176989|gb|EKX45871.1| hypothetical protein GUITHDRAFT_71051 [Guillardia theta CCMP2712]
Length = 356
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 104/269 (38%), Gaps = 21/269 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG----------VVQAFDNYDAQ--LYGRDGPT-GIYV 49
C C S + + G +C +CG VQ +N Q + G+ P G+
Sbjct: 5 CPKCQSTNIETDGARGEAVCTNCGHVLEECAIVSEVQFSENAGGQSSVVGQFVPEHGLSG 64
Query: 50 HVGTAGTGS-ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G G G + +E + ++I + L L + F G
Sbjct: 65 FRGAPGYGGFSKESREVTLANGKRIIQHIAGCLRLASNHVEVAHRFFQQAVQKNFIQGRR 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
++ AC Y+V R S + + A VL DVY+LG + + + L++KL +D S++
Sbjct: 125 TNSVVAACLYIVCRRLKTSHMLIDFAEVLQIDVYDLGNVFLKFCKELHIKLDPID-PSLY 183
Query: 169 ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
R R +E ++ +W + TGRRP + A L+ +++
Sbjct: 184 IR-----RFASMLEFEEKTHQVAHTALRIVARMNREWMI-TGRRPAGICGAGLIIAAKMH 237
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257
G + +A+ V T +KR E E
Sbjct: 238 GFNRTETQIAQVVRICDGTLKKRLSEFDE 266
>gi|123472770|ref|XP_001319577.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
gi|121902363|gb|EAY07354.1| Transcription factor TFIIB repeat family protein [Trichomonas
vaginalis G3]
Length = 409
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV---QAFDN---YDAQLYGRDGPTGIYVHVGTAGT 56
C CG + D +G IC +CG++ QA N + +G +G +V
Sbjct: 6 CPQCGGEGTIIND-NGRRICSACGLILQEQALVNELSFIDNAHGAATVSGQFVPSSGMSG 64
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT-DGEFGLGDWFPILIGA 115
+ + E ID + L Q ++++ + I +I F G I+ A
Sbjct: 65 -MGGGVSTQTVTEGLNKIDAICDNLPKLSQDAVELAHRIYQIAVKHRFTRGRTIEIVSAA 123
Query: 116 CSYVVMRLDDKS-LPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
YV +R++ S + +VA ++C +YEL R+ +N LP +D V R +
Sbjct: 124 AVYVAIRVNRSSGYLLDDVAEHVSCGIYELAATALRLAHAVNQPLPTIDPVLYITRFLEE 183
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
L L + + +++ + ++ TGR+P +V ++ +++ + +
Sbjct: 184 LNLG-------RNLKAVHDTAIHIVHRLDRDWIQTGRKPSGIVGTAIMIACQIHHIPISK 236
Query: 235 ENVAKEVHCTVVTCRKRYKELLE 257
E + + T KR KE+ E
Sbjct: 237 ERIKEIARVCTSTINKRLKEISE 259
>gi|440493061|gb|ELQ75570.1| Transcription initiation factor TFIIIB, Brf1 subunit, partial
[Trachipleistophora hominis]
Length = 429
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 38/273 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQ-----------AFDNYDAQLYGRD-GPTGIYVH 50
C +CGS + + ++ C CG + +N +QL G+ T Y
Sbjct: 23 CKTCGSTDIDDGHSTSNICCRKCGTLNEELFITSSLNFTENNGSSQLNGQFVRITDTYAK 82
Query: 51 VG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
VG T + + K I S L DE+ + S+Q G G
Sbjct: 83 VGGNIIRTTNLQIQNQIKNICGSLGLSDEVAQSAYRWYKLSLQ----------GNLTRGR 132
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
+ AC Y+V R + + + A +L+ DV+++G + R+V FLN+K+P +D
Sbjct: 133 NILYTLSACIYIVCRQEKTPHLLIDFAQLLDLDVFKIGNIFMRIVVFLNVKVPLIDPSLF 192
Query: 168 FERVIRNSRLQGFTNLDESM--LDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R +L+ L +M + RM++ +++ GRRP + A LV
Sbjct: 193 LHRFFSKLKLKNGKILLFAMRLISRMKRDWIVV-----------GRRPNNLCGAALVTAS 241
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ + VAK V + T R KE+ +
Sbjct: 242 RVYAEERSVLEVAKAVKVSPHTINIRLKEMCDT 274
>gi|341583086|ref|YP_004763578.1| transcription initiation factor IIB [Thermococcus sp. 4557]
gi|340810744|gb|AEK73901.1| transcription initiation factor IIB [Thermococcus sp. 4557]
Length = 299
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 106/301 (35%), Gaps = 58/301 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G +IC CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPGRGEIICKVCGYVIEENVVDTGPEWRAFDASQREKRARVGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D + +L L
Sbjct: 67 HDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEI 186
Query: 145 GRMITRVVEFLNLK-----LPEVDIVSMFERVIRNSRLQGFTNLDE-SMLDRMRKQGVLL 198
GR + LNL + D V+ F DE M +R+R++ + +
Sbjct: 187 GRSFRFIARNLNLTPKKLFVKPTDYVNKFA--------------DELGMSERVRRRAIAI 232
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A LT+G+ P +V A L L VA+ T VT R RYKEL++
Sbjct: 233 LEEAYDRGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKELVDK 292
Query: 259 L 259
L
Sbjct: 293 L 293
>gi|390961643|ref|YP_006425477.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390519951|gb|AFL95683.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 298
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L + G ++C CG V +AFD R G P + +
Sbjct: 2 CPICGSDKLFYDPRRGEIVCSVCGYVVQQNVVDEGPEWRAFDPDQRAKRARTGAPMTLMI 61
Query: 50 HVGTAGTGSALNYKEK------------------KIYESNKLIDE-----LTFKLDLTGQ 86
H G + +++++K ++++ I++ L F L +
Sbjct: 62 H--DKGLSTDIDWRDKDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 119
Query: 87 RSIQIK----------NMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ Q++ ++ K + G ++ A Y R++ + E+A+V
Sbjct: 120 MAAQMRLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAV 179
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+GR + LNL L + +R N+ R +K+
Sbjct: 180 SKVTKKEIGRSYRFLARGLNLNLRPTSPIEYVDR------FGDALNVSA----RTKKRAK 229
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+L A+K +T+G+ P + A L L G VA+ H T VT R RYKEL+
Sbjct: 230 EILREAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELV 289
Query: 257 EAL 259
E L
Sbjct: 290 EKL 292
>gi|397651191|ref|YP_006491772.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
gi|393188782|gb|AFN03480.1| transcription initiation factor IIB chain b [Pyrococcus furiosus
COM1]
Length = 273
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 29/273 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C C S+ L + G + C CG + A + D++L + I + G +
Sbjct: 7 CPYCKSRDLVYDRQHGEVFCKKCGSILATNLVDSELSRKTKTNDIPRYTKRIG-----EF 61
Query: 63 KEKKIYE----SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF----------GLGDW 108
+KIY K+ E L ++ R + + K + E GL
Sbjct: 62 TREKIYRLRKWQKKISSERNLVLAMSELRRLSGMLKLPKYVEEEAAYLYREAAKRGLTRR 121
Query: 109 FPI--LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
PI + AC Y RL ++E+AS + E+ + +V LNL P++ +
Sbjct: 122 IPIETTVAACIYATCRLFKVPRTLNEIASYSKTEKKEIMKAFRVIVRNLNL-TPKMLLAR 180
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ V F + + + +R+R++ V +L A + +T+G+ P+ +V A L
Sbjct: 181 PTDYV------DKFAD-ELELSERVRRRTVDILRRANEEGITSGKNPLSLVAAALYIASL 233
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G + +A+ + +T R RYKEL+ L
Sbjct: 234 LEGERRSQKEIARVTGVSEMTVRNRYKELVMKL 266
>gi|48478410|ref|YP_024116.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
gi|48431058|gb|AAT43923.1| transcription initiation factor IIB [Picrophilus torridus DSM 9790]
Length = 310
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 110/306 (35%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G LIC +CG+V +AFD+ + R G Y
Sbjct: 14 CPECGSSQLVRDYERGELICSNCGLVIDDSYIDEGPEWRAFDSEQNESRARTGSPMTYT- 72
Query: 51 VGTAGTGSALNYKEKKIY----------------------------ESN-----KLIDEL 77
+ G + +++K K Y E N + ++ +
Sbjct: 73 IHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERM 132
Query: 78 TFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
T L + + K G ++ Y R+ + + E+ASV
Sbjct: 133 TSNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASVT 192
Query: 138 NCDVYELGRMITRVVEFLNLKL----PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
E+GR + +L L + PE D V+ F + L SM R R
Sbjct: 193 RVKKKEIGRTYRIMARYLKLNIMPSKPE-DYVNRF-----------CSKLRLSMEARKRA 240
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ +L + AV LT+G+ P V A + + G +A+ T VT R RYK
Sbjct: 241 EEILKM--AVDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYK 298
Query: 254 ELLEAL 259
EL E L
Sbjct: 299 ELTEKL 304
>gi|429240773|ref|NP_596265.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe 972h-]
gi|395398538|sp|Q9P6R0.2|TF3B_SCHPO RecName: Full=Transcription factor IIIB 60 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1; AltName: Full=TFIIB-related factor
gi|347834355|emb|CAB89885.2| transcription factor TFIIIB complex subunit Brf1
[Schizosaccharomyces pombe]
Length = 492
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 26/272 (9%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----------- 49
M C +CGS T + SG+ C CGVV D +++ + TG V
Sbjct: 1 MGCPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQT 60
Query: 50 HVGTAG----TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
H T G ++ +E I + I L L L + + F
Sbjct: 61 HARTFGGPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIK 120
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G ++ +C Y+V R+ S + + + +L +V++LG ++ L LP +D
Sbjct: 121 GRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNLPLLDPS 180
Query: 166 SMFERVIRNSRLQGFTNLDE--SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
R F +L E R+ + L+ + ++ GRRP + A L+
Sbjct: 181 LYISR---------FASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLI 231
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V V +T +KR E
Sbjct: 232 AARMNNFRRSVREVVHVVKVADITIQKRLDEF 263
>gi|340372189|ref|XP_003384627.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Amphimedon queenslandica]
Length = 649
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 20/250 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C CG + ++ G +CV CGVV D ++L ++ +G VG +
Sbjct: 10 CPHCGGSEIEKDTARGDAVCVGCGVVLEEDIIVSELTFQEQSSGSLALVGQFVS------ 63
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT-DGEFGLGDWFPILIGACSYVVM 121
ES + + L +L L Q I + K+ G I+ AC Y+V
Sbjct: 64 -----TESKRRLTHLGSQLKLN-QHCIDMAFGFFKMALQLNLTRGRKSSIMDTACLYLVC 117
Query: 122 RLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFT 181
R + + + + VL +VY LGR R+ L++ P +D R L G
Sbjct: 118 RSEGTPHMLLDFSDVLQINVYSLGRAYLRLSTALHINPPALDPCLYIHRFAHKLEL-GDK 176
Query: 182 NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEV 241
D SM + L+ + ++ GRRP + A L+ L+ + ++ ++K V
Sbjct: 177 VHDVSM------TALRLVARMKRDWIHHGRRPAGLCGAALLVAARLHNFNRSVKQISKIV 230
Query: 242 HCTVVTCRKR 251
+ T RKR
Sbjct: 231 KLSEATIRKR 240
>gi|390961741|ref|YP_006425575.1| transcription initiation factor IIB [Thermococcus sp. CL1]
gi|390520049|gb|AFL95781.1| transcription initiation factor IIB [Thermococcus sp. CL1]
Length = 299
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 108/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G +IC CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPGRGEIICKVCGYVIEENVVDMGPEWRAFDASQREKRARVGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D + +L L
Sbjct: 67 HDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYASCRLLKVPRTLDEIADISRVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +R+R++ + +L A +
Sbjct: 187 GRSFRFIARNLNLT-PKKLFVKPTDYVNKFADELGLS-------ERVRRRAIAILEEAYE 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L VA+ T VT R RYKEL++ L
Sbjct: 239 KGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKELVDKL 293
>gi|393796884|ref|ZP_10380248.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 302
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 110/301 (36%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + + C CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGQGTLVTDATTAENFCGKCGFVITEKVDESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTSAMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD V R+ + L ++ ++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPVKCISRIASKAGLS----------EKTKRAATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG S +VA+ T VT R RYK L A
Sbjct: 240 LQTAEEQKISAGKDPMGLAAAALYVACVTNGESKTQRDVAEAAGVTEVTIRNRYKGLKLA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|255513741|gb|EET90006.1| Transcription factor TFIIB cyclin-related [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 380
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 104/301 (34%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCGS L + G L+C +CG+V +AFD R G Y
Sbjct: 84 CPSCGSTALIFDSERGELVCNNCGLVIEENVTDTGPEWRAFDADQRNSRARTGAPMKYTR 143
Query: 51 ------------------VGTAGTGSALNYKEKKIY---------ESNKLI-----DELT 78
V A Y+ +K + E N LI + ++
Sbjct: 144 PNKGLVTEIDLYNKDIRGVRIPSKRQAQLYRMRKWHKRASIASSSERNYLIALPELNRVS 203
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
L L + K G ++ A Y R + E+A++
Sbjct: 204 SYLGLPENIRENAALLYRKCVQNNLIRGRPIETVVQAVIYAACRKAGMPRTLDEIATISG 263
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
E+GR + L LK+P D ++ R + +L G +++ V L
Sbjct: 264 LPKKEIGRAYRAISHELGLKIPLTDPIAYVPRYVNALKLSG----------EAQEKAVEL 313
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
LN A+ L +GR P V A + L G + VA T VT R RY+EL E
Sbjct: 314 LNDAMAKGLVSGRSPTGVSAAAVYIAGALAGERRTQKEVADVAGVTEVTIRNRYRELKEQ 373
Query: 259 L 259
L
Sbjct: 374 L 374
>gi|403373133|gb|EJY86480.1| hypothetical protein OXYTRI_13619 [Oxytricha trifallax]
Length = 521
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 33/272 (12%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYVHVGTAGTGSA 59
M C CGS G C+ CG V + ++L + TG +++ G A
Sbjct: 1 MKCNKCGSTQTEYNAPQGIYACLGCGNVLESNTIVSELQFANSMATGFFLN---QRNGQA 57
Query: 60 LNYKEKKIYESN----------KLIDELTFKLDLT------GQRSIQIKNMIDKITDGEF 103
Y+ K+ S+ K+++ + +L ++ GQR ++ + F
Sbjct: 58 ALYQGKRALFSDSRALRLSKGYKVVEGIASQLGMSQYIVEAGQRFFKLA------YEKNF 111
Query: 104 GLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD 163
G + C Y+ R + + + + VL +VY LG + ++V+ L L++P +D
Sbjct: 112 IQGRNTKHVAAVCLYIACRKEKTPHLLIDFSDVLQTNVYILGSVYLKLVQRLFLEVPLID 171
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
R +G ++ + L +R LL + ++TTGRRP + A ++
Sbjct: 172 PSIFIHRFCSKLEFEGKSH--QVALTALR-----LLQTMKRAWITTGRRPNGLCGAAILI 224
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ I + + VH T RKR E
Sbjct: 225 AARYHNYKRNIGQIVRVVHVCEETIRKRLDEF 256
>gi|45954|emb|CAA50006.1| transcription factor IIB [Pyrococcus woesei]
Length = 261
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ AC Y RL + E+A + D E+GR + LNL P+ V + V
Sbjct: 115 VMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNL-TPKKLFVKPTDYV 173
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
+ + G + +++R++ + +L+ A K LT+G+ P +V A L L G
Sbjct: 174 NKFADELGLS-------EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEK 226
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ T VT R RYKEL+E L
Sbjct: 227 RTQREVAEVARVTEVTVRNRYKELVEKL 254
>gi|70953761|ref|XP_745961.1| transcription factor IIIb subunit [Plasmodium chabaudi chabaudi]
gi|56526443|emb|CAH75344.1| transcription factor IIIb subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 717
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 113/278 (40%), Gaps = 17/278 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGTGS 58
C +C S + + G +IC+ CG V + L + G VG ++GT S
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 AL------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ +E + + I ++ L L+ Q + + F +G +
Sbjct: 63 FILSWGIRESREISLQKGYINIQKIADNLHLSSQHIEAAQRIYLMALQRNFTMGRNNSYV 122
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L++ +P +D ER
Sbjct: 123 AASCLYTICRREKSPIMLIDFSDILQTPVKPLGKTFLKLLRLLHISVPNIDPSLFLERFA 182
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + ++ G+ L+ + +++TGRRP + A L+ ++G+++
Sbjct: 183 YKLNLKN-------DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGITI 235
Query: 233 KIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGK 270
+A+ V + T KR E + +A + K
Sbjct: 236 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEFDK 273
>gi|212224249|ref|YP_002307485.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009206|gb|ACJ16588.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 299
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 108/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAFDASQREKRARVGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D + +L L
Sbjct: 67 HDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIASQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISRVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A +
Sbjct: 187 GRSFRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIAILEEAYE 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L VA+ T VT R RYKEL+E L
Sbjct: 239 KGLTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>gi|407462158|ref|YP_006773475.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045780|gb|AFS80533.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 302
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 112/301 (37%), Gaps = 55/301 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C CG V ++F N + + R G PT + +
Sbjct: 11 CPRCGKGTLVTDANTGENFCGKCGFVITDKVEESGPEWRSFSN-EGENKSRAGVPTSLAM 69
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 70 HDMGLATVINPQNRDATGKPLTASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 129
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++ N
Sbjct: 130 DKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIGQASN 189
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ LNLK+P VD + R+ + L ++ +++ +
Sbjct: 190 IKRKDIARCYRLLLRELNLKMPVVDPIKCISRIASKAGLS----------EKTKRKATKI 239
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 240 LQTAEENKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKVA 299
Query: 259 L 259
L
Sbjct: 300 L 300
>gi|297842649|ref|XP_002889206.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
gi|297335047|gb|EFH65465.1| hypothetical protein ARALYDRAFT_316772 [Arabidopsis lyrata subsp.
lyrata]
Length = 574
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 109/268 (40%), Gaps = 20/268 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL------YGRDGPTGIYVHVGTAGT 56
C C G L C CG + N+ + G+ +G V +G
Sbjct: 4 CKHCAKNVPGIRPFDGGLACDLCGRILENFNFSTDVTFVKNAAGQSQASGNIVTSVKSGL 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRS---IQIKNMIDKITDGEFGLGDWFPILI 113
S+ +E++ + + L L + +R + + TD F G ++
Sbjct: 64 SSS---RERRKRIARDELRNLKDALGIGDERDDVIVMAAEFFEMATDQNFTKGRRTELVQ 120
Query: 114 GACSYVVMRLDDKSLP--ISEVASVLNCDVYELGRMITRVVEFL----NLKLPEVDIVSM 167
+C Y+ R +K +P + + +S L VYELG + ++ E L N E+ S+
Sbjct: 121 SSCLYLTCR--EKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMLYLVQNENYEELVDPSI 178
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
F N+ L+G N+ +++ D++ +++ + ++ TGR+P + A +
Sbjct: 179 FIPRFMNNLLKGAHNITKNVWDKVFGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALS 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+G+ ++AK VH T KR E
Sbjct: 239 HGIMCSRADIAKIVHMCEATITKRLNEF 266
>gi|290559596|gb|EFD92924.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidophilus ARMAN-5]
Length = 307
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 108/299 (36%), Gaps = 55/299 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGP------ 44
C SCGS+++T + +G L+C +CG V ++F++ + GR G
Sbjct: 12 CPSCGSESVTYDKSTGELVCQNCGYVIEGDAIDYGREWRSFEDERDEGKGRMGSPLSYAK 71
Query: 45 --TGIYVHVGTAGTGSALN-------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMI 95
G +G A L+ YK +K E K LT R + +
Sbjct: 72 YDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRRASNRLHV 131
Query: 96 DKITDGEFG------------LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYE 143
I E G +I Y R ++ + + E++ + E
Sbjct: 132 SNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISDTFEVERKE 191
Query: 144 LG---RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLN 200
+G R++ R + L D + F ++ S ++ V LL
Sbjct: 192 VGKAYRLLCRELGIKILPTSPSDYIYKFASELKVS-------------NKTVSDAVKLLK 238
Query: 201 CAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
A LT+G+ PM + AVL +N + AK T VT R RYKEL + L
Sbjct: 239 EAEDKGLTSGKGPMGIAAAVLYVSTLINKEKKTQRDAAKAAGITEVTIRNRYKELYQVL 297
>gi|212224386|ref|YP_002307622.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
gi|212009343|gb|ACJ16725.1| transcription initiation factor IIB [Thermococcus onnurineus NA1]
Length = 303
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L + G ++C CG V +AFD R G P + +
Sbjct: 7 CPVCGSDKLFYDPRRGEIVCSVCGYVVQQNVIDEGPEWRAFDPDQRTKRARTGAPMTLMI 66
Query: 50 HVGTAGTGSALNYKEK------------------KIYESNKLIDE-----LTFKLDLTGQ 86
H G + ++++++ ++++ I++ L F L +
Sbjct: 67 H--DKGLSTDIDWRDRDIHGNQITGMYRTKMRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 87 RSIQI----------KNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ Q+ ++ K + G ++ A Y R++ + E+A+V
Sbjct: 125 MAAQMMLPRRVKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAAV 184
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+GR + L L L + +R +LD S R +K+
Sbjct: 185 SKVTKKEIGRSYRFLARGLGLNLRPTSPIEYIDRF--------GDSLDVS--QRTKKRAK 234
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+L A+K +T+G+ P + A L L G VA+ H T VT R RYKEL+
Sbjct: 235 EILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELV 294
Query: 257 EAL 259
E L
Sbjct: 295 EKL 297
>gi|344230463|gb|EGV62348.1| BRF1-domain-containing protein [Candida tenuis ATCC 10573]
Length = 588
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 49/283 (17%)
Query: 3 CTSCGSKTLTREDI---SGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYVHVGTAGTGS 58
C CG +L DI SG+L C SCG V + +++ +G + G V G+
Sbjct: 8 CPRCGEPSLV-SDITTNSGNLTCSSCGTVVHENPIVSEVSFGENASGGAVVQGTMVGSDQ 66
Query: 59 A---LNYKEKKIYESNKLIDELTFKLDLTGQRSIQ----IKNMIDKITDGEFGLGDWFPI 111
A ++ ++ + ++ + LTG+R+I+ N+ D I+D G WF +
Sbjct: 67 ARVPISGRQNAMESRDQTM--------LTGRRNIKDLAASLNIPDYISDAAHG---WFKL 115
Query: 112 LI--------------GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL 157
+ AC Y+ R + S + + +S L V+ LG ++V LN+
Sbjct: 116 ALNTNFVQGRRSQNVTAACLYIACRKEKTSHLLIDFSSRLQISVFSLGATFLKMVRTLNI 175
Query: 158 -KLPEVD---IVSMF-ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRR 212
KLP VD +S F ER+ + TN ++ + + K + GRR
Sbjct: 176 TKLPLVDPSLFISHFAERLNLDREKPNSTN-------QVISDAIKISFRMAKDSIVEGRR 228
Query: 213 PMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
P V A ++ + +NG + H + T + R E
Sbjct: 229 PAGVAGACVMMALRMNGFQKDPSEIVAIAHVSSDTLQARMDEF 271
>gi|257076875|ref|ZP_05571236.1| transcription initiation factor IIB [Ferroplasma acidarmanus fer1]
Length = 311
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 110/305 (36%), Gaps = 62/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G L+C +CG+V +AFD+ ++ R G Y
Sbjct: 15 CPECGSSQLVRDYERGELVCSNCGLVIDDSYIDEGPEWRAFDSEQSESRARTGSPMTYT- 73
Query: 51 VGTAGTGSALNYKEKKIY-ESNKLIDELTFKLDLTGQRSIQIKNMID------------- 96
+ G + +++K K Y +S + Q+ I++ N +
Sbjct: 74 IHDKGLSTDISWKNKDSYGKSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERM 133
Query: 97 -------------------KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
K G ++ Y R+ + + E+ASV
Sbjct: 134 ASNLSIPNDVRETSAVIYRKAVKQNMIRGRSIEGVVAGSIYAACRITNVPRTLDEIASVT 193
Query: 138 NCDVYELGRMITRVVEFLNLK-LPEV--DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+GR + +L L LP D V+ F + L SM R R +
Sbjct: 194 RVKKKEIGRTYRIMARYLKLNILPSKPDDYVNRF-----------CSKLRLSMEARKRAE 242
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+L + A+ LT+G+ P V A + + G +A+ T VT R RYKE
Sbjct: 243 EILKM--AIDNDLTSGKGPTGVAAAAIYIASLITGERRTQRAIAEVAGVTEVTIRNRYKE 300
Query: 255 LLEAL 259
L E L
Sbjct: 301 LTEKL 305
>gi|71003944|ref|XP_756638.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
gi|46095578|gb|EAK80811.1| hypothetical protein UM00491.1 [Ustilago maydis 521]
Length = 765
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 58/293 (19%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQ--------------------------AFDNY 34
M CT+CGS + D +C CGVV A D
Sbjct: 1 MKCTNCGSSAIDYAD--NQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAGDQA 58
Query: 35 DAQLYGRDGPTGIYVH------VGTAGTGSALNYKEKKIYESNKLIDELT--FKLDLTGQ 86
A++ G G G YV + A TG +N + + + D F L L G
Sbjct: 59 RARVSGPGGFRGGYVSESRDMTISNARTG--INNMASALRIPSHVADRALRFFTLALDGG 116
Query: 87 RSI----QIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVY 142
S + KN + LG + +C YV R++ + + + A + +V+
Sbjct: 117 ASAATGEEPKNYV---------LGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNVF 167
Query: 143 ELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCA 202
LGR +++ LNL+LP +D I +R + E ++ L++
Sbjct: 168 ILGRSYLKLIRVLNLRLPLIDP------SIYIARFAALLDFGEET-QKVAYDASRLVSRF 220
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
K ++T GRRP + A L+ +N + V + V VT + R +E
Sbjct: 221 QKDWITEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEEF 273
>gi|379335167|gb|AFD03156.1| transcription factor TFIIB cyclin-related protein [uncultured
bacterium W5-77b]
Length = 303
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 114/301 (37%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG TL + +G C CG V ++F + + R G PT + +
Sbjct: 11 CPRCGKATLVTDANTGENFCGKCGFVVTEKVSESGPEWRSFSKEEHEGRSRAGVPTSLAM 70
Query: 50 H-------VGTA---GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L+ K E + D + + + Q + +D++
Sbjct: 71 HDMGLATIIGPADRDATGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLK 130
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
D E GL G LI + Y R + + ++A+ N
Sbjct: 131 DKLAVGDTVIEKAAYIYRKALEKGLVRGRSISALIASALYAACRDTETPRTLKDIANASN 190
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R ++ L LK+P V+ V+ SR+ L E + +++ +
Sbjct: 191 IKRKDIARCYRLLLRELGLKMPVVNPVNCI------SRIASIAGLSE----KTKREASKI 240
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L A + ++ G+ PM + A L NG + +VA+ T VT R RYK L A
Sbjct: 241 LKNAEEVKISAGKDPMGLAAAALYVACVTNGENKTQRDVAEAAGVTEVTIRNRYKGLKIA 300
Query: 259 L 259
L
Sbjct: 301 L 301
>gi|410720379|ref|ZP_11359735.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
gi|410601161|gb|EKQ55681.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanobacterium sp. Maddingley
MBC34]
Length = 340
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 110/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C C S+ L + G ++C SCG+V +AFD+ R G Y
Sbjct: 44 CPECQSEKLINDHERGEIVCGSCGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 102
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 103 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 162
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + + E+A V
Sbjct: 163 SSRLGLPRSVREAASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 222
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 223 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELNLSG----------EVQSKAIE 272
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 273 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 332
Query: 258 AL 259
L
Sbjct: 333 QL 334
>gi|2392147|pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G ++ AC Y RL + E+A + D E+GR + LNL P+ V
Sbjct: 48 GRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNL-TPKKLFV 106
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+ V + + G + +++R++ + +L+ A K LT+G+ P +V A L
Sbjct: 107 KPTDYVNKFADELGLS-------EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIAS 159
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G VA+ T VT R RYKEL+E L
Sbjct: 160 LLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193
>gi|6573567|pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 201
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G ++ AC Y RL + E+A + D E+GR + LNL P+ V
Sbjct: 49 GRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLT-PKKLFV 107
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+ V + + G + +++R++ + +L+ A K LT+G+ P +V A L
Sbjct: 108 KPTDYVNKFADELGLS-------EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIAS 160
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G VA+ T VT R RYKEL+E L
Sbjct: 161 LLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 194
>gi|339241573|ref|XP_003376712.1| transcription factor IIIBsubunit [Trichinella spiralis]
gi|316974558|gb|EFV58043.1| transcription factor IIIBsubunit [Trichinella spiralis]
Length = 605
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 30/271 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN--YDAQLY----GRDGPTGIYVHVGTAG- 55
C CG + L + G+ +C +CG V + + + + Y GR G ++H +
Sbjct: 4 CPECGGRELVEDSTVGNNVCGNCGHVISENTIVSEVEFYETAGGRSVLLGQFIHKDGSSI 63
Query: 56 --TG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLGDW 108
TG ++L+ E + K ++ + +L L+ Q + KI G G
Sbjct: 64 SLTGMKNMNSLSSTELTYIKVRKHMENVASQLQLS-QAVTEAGFRFYKIAHGRSLTRGRK 122
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
+I + Y+ RL+ + + + V +V+ LGR + + ++LKLP D
Sbjct: 123 SSHVIPSLLYISCRLNAVPQMLIDFSDVAEVNVFTLGRTFSFLAREMHLKLPPTDPCIYV 182
Query: 169 ERVIRNSRLQGFTN----LDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R + R N L ++ RM+ ++T GRRP + A L+
Sbjct: 183 LRFAQKLRFGDKENQVIHLALRLIQRMKND-----------WMTYGRRPAGLCGAALIIA 231
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
G + IENV + VH RKR E
Sbjct: 232 ARYYGFNRTIENVVRVVHIGAGVLRKRLDEF 262
>gi|348554702|ref|XP_003463164.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Cavia porcellus]
Length = 677
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 100/276 (36%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDGPT- 45
C +CGS + + G +C +CG V Q +N Q DGP
Sbjct: 6 CRACGSTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGPGK 65
Query: 46 ------GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G +V++G L + I+ L +L I K ++K
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH---LGSQLQLNQHCLDTAFIFFKMAVNK-- 120
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 121 --SLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL C + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQCMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|156341179|ref|XP_001620678.1| hypothetical protein NEMVEDRAFT_v1g147404 [Nematostella vectensis]
gi|156205891|gb|EDO28578.1| predicted protein [Nematostella vectensis]
Length = 522
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 105/270 (38%), Gaps = 26/270 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYV------ 49
C++CG + + G +C+ CG V DN + G G +V
Sbjct: 5 CSNCGGSDIDLDPSRGDAVCMGCGSVLE-DNIIVSEVQFQENSLGGTSAIGQFVSSEGKE 63
Query: 50 HVGT----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
GT GT LN+ +++ K I++L +L + N +
Sbjct: 64 QFGTPSRGGGTYVHLNHF-WSLFKGRKRINQLGHQLQMNQHCIDTAYNFYKLAVNKRLTR 122
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G ++ AC Y+V R + + + + +L DV+ LGR ++ + L + LP +D
Sbjct: 123 GRRTAHVVAACLYLVCRTERTPHMLLDFSDILQIDVFTLGRAYLKLAQELYINLPAIDPC 182
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R L G D ++ + L++ + ++ GRRP + A L+
Sbjct: 183 LYIHRFAHKLEL-GEKEHDVAVT------ALRLVSRMKRDWIHHGRRPSGLCGAALLVAS 235
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + + V K V + T RKR E
Sbjct: 236 RLHSFNRSVREVVKVVRISDTTIRKRLGEF 265
>gi|297814368|ref|XP_002875067.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
gi|297320905|gb|EFH51326.1| hypothetical protein ARALYDRAFT_346626 [Arabidopsis lyrata subsp.
lyrata]
Length = 532
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 121/296 (40%), Gaps = 23/296 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAFDNYDAQLY-----GRDGPTGIYVHVGTAGT 56
C C G L C CG +++ F+ D + G+ +G V +G
Sbjct: 4 CNHCAKNVPGIRPFDGGLACDLCGRILENFNFSDEVTFVKNAAGQSQASGNIVTSVQSGI 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN---MIDKITDGEFGLGDWFPILI 113
S+ + ++ + L L + +R I + T+ F G ++
Sbjct: 64 PSS---RVRRFRIARDEFRNLKDALGIGDERDDVIDTAARFFEMATEQNFTKGRRTELVQ 120
Query: 114 GACSYVVMRLDDKSLP--ISEVASVLNCDVYELGRMITRVVEFL----NLKLPEVDIVSM 167
+C Y+ R +K +P + + +S L VYELG + ++ E N E+ S+
Sbjct: 121 SSCLYLTCR--EKKIPFLLIDFSSYLRVSVYELGSVYLQLCEMFYLVQNGNYEELVDPSI 178
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
F N+ L+G N+ +++LD++ +++ + ++ TGR+P + A +
Sbjct: 179 FIPQFMNNLLKGAHNIAKNVLDKVLGTATNIISSMKRDWMQTGRKPSGICGAAIYIAALS 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPF 283
+G+ ++AK VH T KR E A +L + +N+L+ PF
Sbjct: 239 HGIMCSRADIAKIVHMCEATITKRLDEFANT---EAASLTVDELDKSENILREKPF 291
>gi|118576516|ref|YP_876259.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195037|gb|ABK77955.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 328
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 108/293 (36%), Gaps = 55/293 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG + + ++ G L C +CG V ++F + T + +H
Sbjct: 38 CPSCGKQKIVTDENQGELFCATCGFVITDKLEDMGAEWRSFSGDETSRSRSGAGTSLAMH 97
Query: 51 -------VGTAG---TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
+G+A TG L+ + E + D T + Q N +DK+ D
Sbjct: 98 DMGLSTVIGSANKDTTGKPLSASMRTSIERLRTWDSRTQAHSSADRNLRQALNEMDKMKD 157
Query: 101 GEFGLGDW----------------------FPILIGACSYVVMRLDDKSLPISEVASVLN 138
+ L D L+ AC Y R + + ++A +N
Sbjct: 158 -KLALADAVIEKAAYIYRKAMEKKLVRGRSIHGLVAACLYAACRNTETPRTLDDIAKGIN 216
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
++ R + L LK+P VD V SR+ L+E R +++ + +
Sbjct: 217 IRRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELNE----RTKRRAITI 266
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
L+ A K + G+ PM + A L +G + ++++ T VT R R
Sbjct: 267 LDQAKKLGMVAGKDPMGIAAAALYLACIGSGEAKSQKDISLASGVTEVTIRNR 319
>gi|84490148|ref|YP_448380.1| transcription initiation factor IIB [Methanosphaera stadtmanae DSM
3091]
gi|121731831|sp|Q2NEL6.1|TF2B_METST RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|84373467|gb|ABC57737.1| transcription initiation factor IIB (TFIIB) [Methanosphaera
stadtmanae DSM 3091]
Length = 311
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 109/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + G ++C +CG+V +AFD+ R G Y
Sbjct: 15 CPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKRTRVGAPITYT- 73
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 74 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 133
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + E+A V
Sbjct: 134 SSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADVS 193
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + L+++LP + R L G ++ + +
Sbjct: 194 RVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGV----------VQSKAIE 243
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++N A+ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 244 IINQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 303
Query: 258 AL 259
L
Sbjct: 304 QL 305
>gi|432887931|ref|XP_004074983.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Oryzias
latipes]
Length = 448
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 118/297 (39%), Gaps = 31/297 (10%)
Query: 1 MPCTSCGSKTLTREDI--SGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGS 58
M C CGS + +D+ L+C CG V + + + + +GP Y
Sbjct: 6 MRCPGCGSSNIVDDDLYCQAQLVCADCGSVVSEGSLAEESF--NGPDISYSRTTAVTRKP 63
Query: 59 ALNYKE--------KKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFP 110
+N + +I + I+EL K + T L
Sbjct: 64 CVNLIQGLERVKEISRILRVRREIEELALTY---------YKQAYEHETFLHVTL-QRKE 113
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
IL G C R + + ++ +LN D +G + +++ LN++ P + + E
Sbjct: 114 ILGGCCVLASCRQQRWPITVGTISCLLNGDPAAVGEVYQEMIKVLNIQAPTFSVTDVMEA 173
Query: 171 VIRNSRLQGFTNLDESMLDR--MRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
+ ++ +E D + K+ + L+ A ++ TGR+P+P+++A + +
Sbjct: 174 HCQEYKVSPGHVPEELAEDSKGLTKRAIALVELAADSWIVTGRQPLPIMMAAVYLAWQSL 233
Query: 229 GVSVKIENVAKEVHCTVVTCRK------RYKELLEALVKVAQALPWGKDV-TVKNVL 278
+ + ++ E C + +K R E+ L K+ + +PW K+V T NV+
Sbjct: 234 KPNAQRLKMSLEKFCKLAKVQKSKTAGTRITEMKGMLYKLGKEIPWYKEVLTPDNVV 290
>gi|348532867|ref|XP_003453927.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like
[Oreochromis niloticus]
Length = 452
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 131/304 (43%), Gaps = 43/304 (14%)
Query: 1 MPCTSCGSKTLTREDI--SGSLICVSCG-VVQAFDNYDAQLYGRDGPTGIYVHVGTAGTG 57
M C +CGS + +D+ L+CV CG VV + + G D V
Sbjct: 6 MRCPACGSTNIVDDDLYSQAQLVCVDCGSVVSEGVLANDPVGGSDVSFSRTTAVAKRPCA 65
Query: 58 SALNYKEK-----KIYESNKLIDELT---FKLDLTGQR----SIQIKNMIDKITDGEFGL 105
+ + +++ +I N+ I++L+ +K+ + S+Q K+
Sbjct: 66 NLIKGQQRVKAICRILMVNREIEDLSHTYYKMAYEHKAFLKVSLQKKD------------ 113
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
IL G C V R + + + ++ +L+ D +G + +V+ L+++ P +++
Sbjct: 114 -----ILTGCCVLVSCRQLNWPITVGTISCLLDADSMVVGAIYQEMVKNLSIEAPIINVT 168
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMR---KQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ E ++ ++ E + + R K+ V L+ A ++ TGR+P+P+++A
Sbjct: 169 DVIEAHCHEYKISSL-DVPEELAENSRELTKRAVALVELAADSWIVTGRKPIPIMMAATY 227
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRK------RYKELLEALVKVAQALPWGKD-VTVK 275
+ + + + C V +K R E+ E L K+ + +PW ++ VT
Sbjct: 228 LAWQSLKPNKHRLKFSLDKFCQVAKVKKLKSAMTRVAEIKEVLCKLGKEIPWVRETVTPD 287
Query: 276 NVLK 279
NV++
Sbjct: 288 NVIQ 291
>gi|402585748|gb|EJW79687.1| transcription factor TFIIB repeat family protein, partial
[Wuchereria bancrofti]
Length = 426
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 29/271 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CGS + + G C+ CG V + + ++ G + VG
Sbjct: 5 CPNCGSSEIDDDSARGDSTCMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQL 64
Query: 53 TAGTG-SALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
T +G L+++E + Y+ KLI+E+ +L + N F G
Sbjct: 65 TNLSGVPGLSHQESREITYYKGRKLIEEIASQLRINQHCVNTAFNFFKMCVSRNFTRGRV 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD----I 164
++ AC Y+ RL++ + + + + + +V++LGR + + L + LP D I
Sbjct: 125 RSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRTLNFLTRSLKINLPTTDPCMYI 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
+ + ++ + +L ++ RM++ W + TGRRP + A L+
Sbjct: 185 LRFAVSLDFGAKQKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGAALLLA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + +V + VH + +KR E
Sbjct: 234 ARCYNFNRTVADVVRVVHISEAVVKKRLDEF 264
>gi|269860898|ref|XP_002650166.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
gi|220066389|gb|EED43872.1| transcription factor IIIB subunit [Enterocytozoon bieneusi H348]
Length = 391
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 107/267 (40%), Gaps = 22/267 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFD------NYDAQLYGRDGPTGIYVHVGTAGT 56
C +CGS + + G + C CG++Q + +D + G V++
Sbjct: 6 CINCGSMAIQTDTTRGIICCEDCGMIQEENMIINTIQFDTSNSNKISMQGKVVNIENKNI 65
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGAC 116
G+ Y + Y I + KL L + S G + AC
Sbjct: 66 GTK--YIDSSYYIKT-TIKNICSKLCLNSKHSEIAFKWYKLCLANNLSKGKSILYTLSAC 122
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRV-----VEFLNLKLPEVDIVSMFERV 171
Y+ R + + + ++VL D+Y++G++ ++ +EF + + +D+ R
Sbjct: 123 IYISCRQEATPHLLIDFSNVLRIDMYQIGKIFLKIRNTFGLEFNSFDIGGIDMSLYLHRF 182
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
+ S+L+ F N E +L R +LN K ++ GR+P A ++ + G
Sbjct: 183 V--SQLK-FKNSKEIILLSTR-----ILNRMKKDWIMEGRKPNNSCGAAILLASRILGEP 234
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEA 258
I +AK VH T KR +E+ E
Sbjct: 235 KDISEIAKIVHAAPSTISKRLREISET 261
>gi|241730148|ref|XP_002412272.1| transcription initiation factor IIB, putative [Ixodes scapularis]
gi|215505511|gb|EEC15005.1| transcription initiation factor IIB, putative [Ixodes scapularis]
Length = 619
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 25/269 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDGPTG 46
C CG + + G +C +CG V Q +N QL DG +G
Sbjct: 7 CQHCGCSEIDTDPARGDAVCTNCGSVLEDSIIVSEIQFEENAHGGSRAIGQLISADGTSG 66
Query: 47 IYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ G GS + + ++ + I ++ +L L N G
Sbjct: 67 RSL--GGFQHGSGKESRALTLQKARRKIVQVAERLRLNQHCIDTAFNFYKMALTRHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ AC Y+V R++ + +++ V+ +VYELG+ ++ L + +P +D
Sbjct: 125 RRHSHVVAACIYMVCRIEGTPHMLLDLSDVVQVNVYELGKTFLKLSSALCINIPAIDPCL 184
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R + T+ E + +R L+ + ++ TGRRP + A L+
Sbjct: 185 YIVRFAHHLEFADKTH--EVSMTALR-----LVQRMKRDWMHTGRRPSGLCGAALLVASR 237
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ S I+++ + V T RKR E
Sbjct: 238 LHDFSRTIKDLVRVVKVCETTIRKRLTEF 266
>gi|242399568|ref|YP_002994993.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
gi|242265962|gb|ACS90644.1| Transcription initiation factor IIB 2 [Thermococcus sibiricus MM
739]
Length = 272
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ AC Y R+ + + E+ D E+GR +V LNLKL + V V
Sbjct: 129 MVSACLYAACRIANAPRTLDEIEDFSKVDKKEIGRSYRYLVRELNLKLRPTNPVDY---V 185
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
+R G T ++ +++ + ++N A+K LT+G+ P + A + L G
Sbjct: 186 VRFGDQLGVT-------EKTKRRAMRIVNQAIKMGLTSGKGPTGIAAAAIYIASLLEGEK 238
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
+ VA+ T VT R RYKEL++ L
Sbjct: 239 MTQREVAEVARVTEVTVRNRYKELVDKL 266
>gi|323508031|emb|CBQ67902.1| related to BRF1-TFIIIB subunit, 70 kD [Sporisorium reilianum SRZ2]
Length = 775
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 109/294 (37%), Gaps = 60/294 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQ--------------------------AFDNY 34
M CT+CGS + D +C CGVV A D
Sbjct: 1 MKCTNCGSSAIDYAD--NQAVCSQCGVVLEESQIVSDITFGENSAGGAVVQGSMIAADQA 58
Query: 35 DAQLYGRDGPTGIYV-----------HVGTAGTGSALNYKEKKIYESNKLIDELTFKLD- 82
A++ G G G YV +G SAL + +++ + T LD
Sbjct: 59 RARVSGPGGFRGGYVSESREMTISNARIGINNMASALRIPS---HVADRSLRFFTLALDG 115
Query: 83 -LTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDV 141
+ + KN + LG + +C YV R++ + + + A + +V
Sbjct: 116 GASAATGDEPKNYV---------LGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNV 166
Query: 142 YELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNC 201
+ LGR +++ LNL+LP +D I +R + E ++ L++
Sbjct: 167 FILGRSYLKLIRVLNLRLPLIDP------SIYIARFAALLDFGEET-QKVAYDASRLVSR 219
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
K +LT GRRP + A L+ +N + V + V VT + R ++
Sbjct: 220 FQKDWLTEGRRPAGICGACLMLAARMNHFRRSVSEVIQVVKIADVTLKARLEDF 273
>gi|386875622|ref|ZP_10117781.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806378|gb|EIJ65838.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 303
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 114/300 (38%), Gaps = 53/300 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG K + + +G L C CG+V ++F N ++ T + +H
Sbjct: 12 CPSCGDKKMVTDQTTGELFCGKCGLVVTDKIAETGAEWRSFSNDESNRTRVGAGTSLTMH 71
Query: 51 -------VGTA---GTGSALNYK---------------------EKKIYESNKLIDELTF 79
+G A TG L+ ++ + ++ +D+L
Sbjct: 72 DMGLSTIIGAANKDSTGKPLSASVRSSIERLRTWDSRTQAHSSADRNLRQALNEMDKLKD 131
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + ++A +N
Sbjct: 132 KLALTDSVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKGINI 191
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ +++L
Sbjct: 192 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAIVIL 241
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
N A + + G+ PM + A L G + ++++ T VT R R L + L
Sbjct: 242 NQAKEIGMVAGKDPMGIAAAALYLACISTGETKSQKDISIASGVTEVTIRNRCAGLRKML 301
>gi|145353293|ref|XP_001420953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357469|ref|XP_001422941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581189|gb|ABO99246.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583185|gb|ABP01300.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 576
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 107/284 (37%), Gaps = 42/284 (14%)
Query: 3 CTSCGSKTLTR-EDISGSLICVSCGVV---QAFDNYDAQL----YGRDGPTGIYV-HVGT 53
C +CG + + +G C +CG + +A + DA G P G YV G
Sbjct: 6 CETCGKRVAAETNEANGFTCCTTCGKILDERAAFSADATFVKNAQGASVPDGHYVPESGV 65
Query: 54 AGT-----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSI--QIKNMIDKITD 100
A G L+ E+ +Y I +L +L + + + +
Sbjct: 66 AHGVIRATRGGRLYGVQLDSHERTLYRGKLEIKQLADRLGIRPREDVVDAAHRLYKLAVQ 125
Query: 101 GEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL- 159
F G + GAC Y++ R + + + + A +L +VY LG + ++ L L+
Sbjct: 126 RNFTRGRRISQVAGACMYIICRQESRPYMLIDFADILQTNVYVLGGVFLQLCRLLRLEQH 185
Query: 160 --------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGR 211
P + I +++ R+ N ++ M++ ++ TGR
Sbjct: 186 PLMQKPIDPSLFIHRFADKLNLGRRMHTVANTALRLVASMKRD-----------WMQTGR 234
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP + A L +++G S +V VH T +KR E
Sbjct: 235 RPNGICGAALWVAAQIHGFSPSKRDVVAVVHVGESTLKKRLSEF 278
>gi|57642222|ref|YP_184700.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
gi|14195235|sp|P58109.1|TF2B2_PYRKO RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|12381905|dbj|BAB21262.1| Tk-TFB [Thermococcus kodakaraensis]
gi|57160546|dbj|BAD86476.1| transcription initiation factor IIB [Thermococcus kodakarensis
KOD1]
Length = 306
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 112/303 (36%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AF+ + R G P + +
Sbjct: 10 CPICGSTEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAFEPGQREKRARTGAPMTLMI 69
Query: 50 HVGTAGTGSALNYKEKKIYES-------NKL--------------------------IDE 76
H G + +++++K I+ + NKL +D
Sbjct: 70 H--DKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 77 LTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ +L L ++ K + G ++ A Y R++ + E+ASV
Sbjct: 128 MAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASV 187
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+GR + L L L S E V R G + R +K+
Sbjct: 188 SKVSKKEIGRSYRFMARGLGLNL---RPTSPIEYVDRFGDALGVSA-------RTKKRAK 237
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+LN A+K +T+G+ P + A L L G VA+ H T VT R RYKEL+
Sbjct: 238 EILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKELV 297
Query: 257 EAL 259
E L
Sbjct: 298 EKL 300
>gi|408402844|ref|YP_006860827.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363440|gb|AFU57170.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 310
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 102 EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
E GL GD ++ A Y +R + E+++ ++ + GR R+V L++K+
Sbjct: 135 ERGLIRGDSIGSVLAASIYTAVRQSGVLRTLDEISASIDVKPKQAGRSYRRIVTELDIKV 194
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R+ +RL+ LDE R +++ + L+ A K L GR P+ + +
Sbjct: 195 PMIDHARYIIRIA--NRLE----LDE----RTKRKALELIEQARKKDLLAGRDPIGMAAS 244
Query: 220 VLVFVVELNGVSVKIE-NVAKEVHCTVVTCRKRYKELLEAL 259
+L ++V L S + + ++AK T VT R R KEL L
Sbjct: 245 IL-YLVNLEEKSYRTQADIAKAAGVTEVTVRNRSKELRNRL 284
>gi|407465001|ref|YP_006775883.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048189|gb|AFS82941.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 303
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 111/300 (37%), Gaps = 53/300 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG K + + +G L C CG+V ++F N + T + +H
Sbjct: 12 CPSCGDKKMVTDQTTGELFCSKCGLVVTDKIADTGAEWRSFSNEEGNKARTGAGTSLTMH 71
Query: 51 -------VGTA---GTGSALNYK---------------------EKKIYESNKLIDELTF 79
+G A TG L+ ++ + ++ +D+L
Sbjct: 72 DMGLSTVIGAANKDATGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKD 131
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + ++A +N
Sbjct: 132 KLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDIAKGINI 191
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ + +L
Sbjct: 192 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAIAIL 241
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
N A + + G+ PM + A L G ++++ T VT R R L + L
Sbjct: 242 NQAKEIGMVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNRCSGLRKML 301
>gi|170291077|ref|YP_001737893.1| transcription factor TFIIB cyclin-related protein [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170175157|gb|ACB08210.1| Transcription factor TFIIB cyclin-related [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 356
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 111/292 (38%), Gaps = 53/292 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDN----------------- 33
C CGSK + + +G L+C +CG++ +AFD+
Sbjct: 43 CPRCGSKNVVEDPNTGDLVCQNCGLILDSSALDFSKDWRAFDSDEYIERAHAGAPITPLR 102
Query: 34 ----YDAQLYGRDGPTGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI 89
D + G + V++ A + KEK I + + I + L L Q +I
Sbjct: 103 PGFGLDTDIVLTKGASKKSVNLLKRAQKHAADSKEKTIEPALRKIRDAADSLVLP-QETI 161
Query: 90 QIKNMIDKITDGEFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRM 147
+ + ++ GL G ++ A Y R D + E++ + E+GR
Sbjct: 162 EDAATLYRMA-ARAGLVKGRSMDAMVAAVIYAACRRTDVPKTLEEISKFFALEEKEIGRS 220
Query: 148 ITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML---DRMRKQGVLLLNCAVK 204
+ L +++P + + F L S L + + Q + ++ A +
Sbjct: 221 FRFLFRKLGIQIPP-------------PKPENFVYLIASKLSLPEEVATQAIRIIKIAKR 267
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
T GR P+ V A + + G+ +A+ + T VT R RYKEL+
Sbjct: 268 NGATMGREPVGVAAAAVYMACQELGLHRTQRELAQAANVTEVTVRNRYKELI 319
>gi|156100339|ref|XP_001615897.1| transcription factor IIIb subunit [Plasmodium vivax Sal-1]
gi|148804771|gb|EDL46170.1| transcription factor IIIb subunit, putative [Plasmodium vivax]
Length = 826
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--AGTGSAL 60
C +C S + + G +IC+ CG V + L + G VG +G+
Sbjct: 8 CKNCHSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGNKS 67
Query: 61 NYKEKKIYESNKL--------IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ ES +L I ++ L L+ Q + + F +G +
Sbjct: 68 FILSWGVRESRELSLQKGYINIQKIADHLHLSTQHVEAAQRIYLMALQRNFTMGRNNSYV 127
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L++ +P +D ER
Sbjct: 128 AASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHISVPNIDPSLYLERFA 187
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + + ++ G+ L+ + ++ TGRRP + A L+ ++G+ +
Sbjct: 188 HKLNLK-------NAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFI 240
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A V + T KR E
Sbjct: 241 HSNTIANIVRISNPTIIKRLSEF 263
>gi|388852063|emb|CCF54239.1| related to BRF1-TFIIIB subunit, 70 kD [Ustilago hordei]
Length = 760
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 110/294 (37%), Gaps = 60/294 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQ--------------------------AFDNY 34
M CT+CGS + + + +C CGVV + D
Sbjct: 1 MKCTNCGSSAI--DYANNQAVCSQCGVVLEESQIVSDITFGENSAGGAVIQGSMISADQA 58
Query: 35 DAQLYGRDGPTGIYV-----------HVGTAGTGSALNYKEKKIYESNKLIDELTFKLD- 82
A++ G G G YV +G SAL + +++ + T LD
Sbjct: 59 RARVSGPGGFRGGYVSESREMTISNARIGINNMASALRIPS---HAADRALRFFTLALDG 115
Query: 83 -LTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDV 141
+ + KN + LG + +C YV R++ + + + A + +V
Sbjct: 116 GASAATGDEPKNYV---------LGRKSEYTVASCLYVACRMEKTTHMLIDFADAIQVNV 166
Query: 142 YELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNC 201
+ LGR +++ LNL+LP +D I +R + E ++ L++
Sbjct: 167 FILGRSYLKLIRVLNLRLPLIDP------SIYIARFAALLDFGEET-QKVAYDASRLVSR 219
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
K ++T GRRP + A L+ +N + + + V VT + R +E
Sbjct: 220 FQKDWITEGRRPAGICGACLMLAARMNHFRRSVSEIIQVVKIADVTLKARLEEF 273
>gi|195349135|ref|XP_002041102.1| GM15370 [Drosophila sechellia]
gi|194122707|gb|EDW44750.1| GM15370 [Drosophila sechellia]
Length = 356
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|299117182|emb|CBN75146.1| similar to TFIIB related factor hBRF [Ectocarpus siliculosus]
Length = 990
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 104/272 (38%), Gaps = 26/272 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNY-----------DAQLYG------RDGPT 45
C SCG + SG C CG V +N + + G R P+
Sbjct: 23 CPSCGGTNFIDQPGSGDRACAECGTVVQENNIVSTVQFSESGGSSNVVGQFVSGDRGRPS 82
Query: 46 GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
G G G + + ++ I K I ++ +L L + + + +
Sbjct: 83 GGGAARGRGRFGQSRDSRDATIQNGKKKIIQVLAQLHLRTTLADEAARLFALCVTQNYVQ 142
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEVD 163
G ++ AC Y+V R + + + +++ L +VY LG+ ++++ LNL ++P VD
Sbjct: 143 GRKTMNIVAACVYIVCRQNHFPIMLIDISDKLAVNVYVLGKTFQKLIKHLNLQTQVPIVD 202
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
+R L TN + + ++ + FL +GR+P + A L
Sbjct: 203 PAMYIKRFAAKLDLGSKTNA-------VCMTALKIIGSMKRDFLASGRQPAGICCAALTL 255
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + E + K V T RKR E
Sbjct: 256 ATRVNRIERSKEEIRKAVKVCDATVRKRLLEF 287
>gi|430813871|emb|CCJ28823.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 452
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 35/246 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------HV 51
C SCGS L + SG CVSCG V + +++ + +G + H
Sbjct: 4 CLSCGSSNLEADSSSGITYCVSCGNVIEENVIVSEITFGEASSGAAIVQGSFVGADQSHA 63
Query: 52 GTAGT---GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
T G S+L +E+ I + I+ L L L+ + S F G
Sbjct: 64 RTNGPYRRQSSLESREQTIANGRRRINALAAALHLSERHSETAVRYFTLAVTHNFIQGRR 123
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNC--------------DVYELGRMITRVVEF 154
+I +C Y+V RL+ S + + + +L +V+ LG ++V+
Sbjct: 124 SQYVIASCLYIVCRLERTSHMLIDFSDILQVNLILKNIYLIVNKINVFTLGSTFLKLVQV 183
Query: 155 LNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214
L++ LP D S++ + R + L F + ++ + L+ + ++ TGRRP
Sbjct: 184 LHITLPFAD-PSLY--ITRFAALLEFG----AETHKVATDAIRLVQRMNRDWMQTGRRPA 236
Query: 215 PVVVAV 220
+++A
Sbjct: 237 GLLIAA 242
>gi|269986930|gb|EEZ93206.1| transcription factor TFIIB cyclin-related protein [Candidatus
Parvarchaeum acidiphilum ARMAN-4]
Length = 307
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 106/302 (35%), Gaps = 57/302 (18%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPT--------------- 45
+ C SCGS ++ + +G L+C +CG V D D YGR+ +
Sbjct: 10 IKCPSCGSTSVMYDKTTGELVCQNCGYVIESDTID---YGREWRSFEDERDEGKGRMGSP 66
Query: 46 --------GIYVHVGTAGTGSALN-------YKEKKIYESNKLIDELTFKLDLTGQRSIQ 90
G +G A L+ YK +K E K LT R
Sbjct: 67 LSYAKYDKGTSTVIGKASESIKLSNANRRTFYKLRKWQPRISTAYERNLKFALTELRHAS 126
Query: 91 IKNMIDKITDGEFG------------LGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
+ + I E G +I Y R ++ + + E++
Sbjct: 127 NRLHVSNIIQEEAAKMYREAITRRLVRGRSMESVIAGALYAAARKHNRPITLDEISETFE 186
Query: 139 CDVYELGRMITRVVEFLNLK-LPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
+ E+G+ + L +K LP S + + + + G +N S V
Sbjct: 187 VERKEVGKAYRLLCRELGIKILPS----SPSDYIYKFASELGVSNKTVS-------DAVK 235
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
LL A LT+G+ PM + AVL +N + AK T VT R RYKEL
Sbjct: 236 LLKEAEDKGLTSGKGPMGIAAAVLYVATLINKEKKTQRDAAKAAGITEVTIRNRYKELYR 295
Query: 258 AL 259
L
Sbjct: 296 VL 297
>gi|190347671|gb|EDK39991.2| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 108/284 (38%), Gaps = 53/284 (18%)
Query: 2 PCTSCG--SKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------ 53
PC +CG S ++ R SG + C CG VQ + +++ + +G V GT
Sbjct: 6 PCRNCGHTSFSIDRYTSSGDVSCSRCGTVQEENPIVSEVQFGESSSGAAVVQGTMVGADQ 65
Query: 54 -----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G +A+ +E+ + K I + + + D I+D +W
Sbjct: 66 TRATFGGRQNAMESREQTLQNGRKKIKRIATAMRIP-----------DYISDA---AAEW 111
Query: 109 FPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154
F + ++ AC YV R + + + +S L VY LG ++V
Sbjct: 112 FRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVRA 171
Query: 155 LNL-KLPEVDIVSMFERVIRNSRLQGFT-NLD-ESMLDRMRKQGVLLLNCAVKWFLTTGR 211
L++ LP D S+F +Q F LD +L ++ K V L ++ GR
Sbjct: 172 LHITNLPLAD-PSLF--------IQHFAERLDFGDLLTKVIKDAVKLAQRMANDWIHEGR 222
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP V A ++ +N + H T ++R E
Sbjct: 223 RPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLNEF 266
>gi|407464963|ref|YP_006775845.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048151|gb|AFS82903.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 115/301 (38%), Gaps = 62/301 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA----QLYGRDG---------PTGIYV 49
C CG +L ++++G C CG V + ++ + + +DG P+ + +
Sbjct: 12 CARCGKNSLLTDEVTGENFCGKCGYVITEKSQESGPEWRSFQKDGGADPARTGAPSSLMI 71
Query: 50 H----------VGTAGTGSALNYKEKKIYES-------------------------NKLI 74
H + +G L+ K E NKL
Sbjct: 72 HDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNKLK 131
Query: 75 DELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVA 134
D+++ ++ + + + ++K + G +I A Y R + + +VA
Sbjct: 132 DKVSIPANVLEKAAYIYRKALEK----KLVRGRSISAMIAASLYAACRDTETPRTLKDVA 187
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
N ++ R + L LK+P VD + R+ +S+L+ + ++ ++
Sbjct: 188 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARI--SSKLE--------ISEKTKRY 237
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
V +L A + + G+ PM + L NGVS+ ++A+ T VT R RYK
Sbjct: 238 AVKVLKEAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNRYKG 297
Query: 255 L 255
L
Sbjct: 298 L 298
>gi|219129783|ref|XP_002185060.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403555|gb|EEC43507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 601
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 31/277 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--AGTGS-- 58
C +CGS ++ + D SG+ +C CGVV + + + +G G VG + T S
Sbjct: 69 CPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSSKA 128
Query: 59 --------------------ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKI 98
+ + +E + + I E+ +L L +
Sbjct: 129 YTGGPGGGGPGGGAGGRYGFSRDSRETTLANGRRRIQEVASRLRLGTHFVDAAHRLFTIA 188
Query: 99 TDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158
+ F G ++ AC Y+ R + + + + L +VY LG + L LK
Sbjct: 189 VERNFVQGRRTTHVVAACLYIACRQEKSQHMLIDFSDALQVNVYTLGTCFLKFRRLLGLK 248
Query: 159 LPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
L +D R +LDE + + + L+ + ++ GRRP +
Sbjct: 249 LEIIDPALYI------YRFAAHLDLDEKA-NAVSLTALRLVARMKRDWIVAGRRPAGICA 301
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A L+ +G S ++V + + T R KE
Sbjct: 302 AALLIASRAHGFSRHHQDVTRILRVCGWTVTNRVKEF 338
>gi|221059469|ref|XP_002260380.1| transcription factor IIIb subunit [Plasmodium knowlesi strain H]
gi|193810453|emb|CAQ41647.1| transcription factor IIIb subunit, putative [Plasmodium knowlesi
strain H]
Length = 850
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--AGTGSAL 60
C +C S + + G +IC+ CG V L + G VG +G+
Sbjct: 8 CKNCHSTDVETNEGQGEVICLRCGSVLEESKIVESLEFVENNNGAISMVGQFVPASGNKS 67
Query: 61 NYKEKKIYESNKL--------IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ ES +L I ++ L L+ Q + + F +G +
Sbjct: 68 FILSWGVRESRELSLQKGYINIQKIAEHLHLSTQHVESAQRIYLMALQRNFTMGRNNSYV 127
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L++ +P +D ER
Sbjct: 128 AASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHISVPNIDPSLYLERFA 187
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + ++ G+ L+ + ++ TGRRP + A L+ ++G+ V
Sbjct: 188 HKLNLKND-------IYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFV 240
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A V + T KR E
Sbjct: 241 HSNTIANIVRISNPTIIKRLSEF 263
>gi|389852789|ref|YP_006355023.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
gi|388250095|gb|AFK22948.1| transcription initiation factor IIB [Pyrococcus sp. ST04]
Length = 261
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y RL + E++ + + E+GR + LNL P+ V + V
Sbjct: 115 VIAACVYAACRLLKVPRTLDEISDIARVEKKEIGRSYRFIARNLNL-TPKKLFVKPTDYV 173
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
+ + G + +++R++ + +L A + LT+G+ P +V A L L G
Sbjct: 174 NKFADELGLS-------EKVRRRAIEILEEAYRRGLTSGKSPAGLVAAALYIASLLEGEK 226
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ T VT R RYKEL+E L
Sbjct: 227 RTQREVAEVARVTEVTVRNRYKELVEKL 254
>gi|345568504|gb|EGX51397.1| hypothetical protein AOL_s00054g96 [Arthrobotrys oligospora ATCC
24927]
Length = 589
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 105/268 (39%), Gaps = 23/268 (8%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVV--QAFD----NYDAQLYGRDGPTGIYV-----H 50
P SC + ++ EDI IC SCG V ++F + G G YV H
Sbjct: 7 PNPSCSNPSV--EDIDDKRICTSCGTVVTESFIVSEITFGETSSGAAVVQGSYVGADQKH 64
Query: 51 VGTAGT---GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
++G A +E+ I + +++L L + + F G
Sbjct: 65 ARSSGPFRRHGAAETREQVISNGRRKLNQLASALSVHDRFVETAARYFTLAVTHNFIQGR 124
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
++ C Y+ RLD + + + + +L +V+ LG ++V+ LNL +P++D
Sbjct: 125 KTQHVVACCLYIACRLDKSAHMLIDFSDILQLNVFSLGSTYLKLVKTLNLNIPQLDPELW 184
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
R R+ T ++ + + ++ + ++ GRRP V A ++ +
Sbjct: 185 IRRFARHLEFGDKTQ-------QVCRDAIKIVQRMDRDWIMEGRRPAGVCGAAIIIAARM 237
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N + V V +T KR +E
Sbjct: 238 NNFRRTVTEVVYIVKVAGMTINKRLEEF 265
>gi|195110647|ref|XP_001999891.1| GI22827 [Drosophila mojavensis]
gi|193916485|gb|EDW15352.1| GI22827 [Drosophila mojavensis]
Length = 671
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 23/271 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTGSA 59
C +CGS + ++ G +C++CG V +++ + G + I V +G A
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEMGHGASAIGQFVSAESSGGA 66
Query: 60 LNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
NY +E I ++ K I L +L LT + N G
Sbjct: 67 TNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLTQHYADTALNFFKMALHRHLTRG 126
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+ AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 127 RKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDPCL 186
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 187 YIMRFA--NRLQLGPKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIAAR 239
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S I +V V T RKR E E
Sbjct: 240 MHEFSRTIADVIGVVKIHESTLRKRLSEFAE 270
>gi|15678905|ref|NP_276022.1| transcription initiation factor IIB [Methanothermobacter
thermautotrophicus str. Delta H]
gi|14195233|sp|O26971.1|TF2B_METTH RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2621979|gb|AAB85383.1| transcription initiation factor TFIIB [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 310
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 108/302 (35%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + ++C CG+V +AFD+ R G Y
Sbjct: 14 CPECGSDDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 72
Query: 51 VGTAGTGSALNYKEKKIYE-----------------------SNKLIDELTFKLD----- 82
+ G + ++++ K IY S L F L
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 132
Query: 83 ---LTGQRSI-QIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
L RS+ + +M+ + + + G ++ A Y R + + E+A V
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 192
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EVQSKAIE 242
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA+ T VT R RYKEL E
Sbjct: 243 IIEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTE 302
Query: 258 AL 259
L
Sbjct: 303 QL 304
>gi|304315034|ref|YP_003850181.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
gi|302588493|gb|ADL58868.1| transcription initiation factor IIB [Methanothermobacter
marburgensis str. Marburg]
Length = 310
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 109/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + ++C CG+V +AFD+ R G Y
Sbjct: 14 CPECGSEDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 72
Query: 51 VGTAGTGSALNYKEKKIYE-----------------------SNKLIDELTFKLD----- 82
+ G + ++++ K IY S L F L
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 132
Query: 83 ---LTGQRSI-QIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
L RS+ + +M+ + + + G ++ A Y R + + E+A V
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRSCNVPRTLDEIAEVS 192
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EVQSKAIE 242
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA+ T VT R RYKEL E
Sbjct: 243 IIEMAMENGLTSGRGPTGVAAAALYIASVLLGECKTQRDVAEVAGVTEVTIRNRYKELTE 302
Query: 258 AL 259
L
Sbjct: 303 QL 304
>gi|11498897|ref|NP_070128.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
gi|14195234|sp|O28970.1|TF2B_ARCFU RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|2649280|gb|AAB89947.1| transcription initiation factor IIB [Archaeoglobus fulgidus DSM
4304]
Length = 326
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 104/304 (34%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G IC CG+V +AFD+ R G Y
Sbjct: 30 CPECGSPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRSRVGAPVTYT- 88
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELT--FKLDLTGQRSIQIKNM-----------IDK 97
+ G + +++ K Y + F+L QR I+I N +D+
Sbjct: 89 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLR-KWQRRIRISNATERNLAFALSELDR 147
Query: 98 ITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ GL G ++ A Y R + E+A+
Sbjct: 148 MASA-LGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAT 206
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
D E+GR + L LKL R L G ++K+
Sbjct: 207 YSRVDRKEIGRTYRFITRELGLKLMPTSPADYIPRFCAALGLSG----------EVQKKA 256
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ ++ A + LT+GR P V A L L G VA+ T VT R RYKEL
Sbjct: 257 IEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKEL 316
Query: 256 LEAL 259
E L
Sbjct: 317 AEKL 320
>gi|268326216|emb|CBH39804.1| transcription initiation factor IIB [uncultured archaeon]
Length = 302
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 105/280 (37%), Gaps = 37/280 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIY-V 49
C CGSK++ + L C CG+V +++D A R GP Y V
Sbjct: 8 CLECGSKSIVTDPKHAELYCADCGMVITENLVDLGPEWRSYDAEQASKRVRTGPPMSYRV 67
Query: 50 H---VGTAGTGS-----------ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMI 95
H + T GS A++ EK + + ID + L+L +
Sbjct: 68 HNKGLSTPTPGSLTRSKRLRGLIAMDSNEKSLSFALGEIDRMACALNLPRDLRETTSLLY 127
Query: 96 DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
K G L A Y+ R + E+A+V + ++ R ++ L
Sbjct: 128 RKAAKRSLIKGRSIEELASAMLYITCRQYGIPRTLKEIAAVSRMPLKKIRRAYIFLLHKL 187
Query: 156 NLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMP 215
+KL D R L+ D +R++ + +++ + G P
Sbjct: 188 EIKLAPADPACYIPRFCSELGLR----------DVIRERAIEIVSEDKETIAAKGWTPTG 237
Query: 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A + L+G SV+++++AK T VT + RYKEL
Sbjct: 238 TAAAAIYLASLLSGESVEVKDMAKVAGTTPVTIQNRYKEL 277
>gi|393214015|gb|EJC99509.1| hypothetical protein FOMMEDRAFT_160578 [Fomitiporia mediterranea
MF3/22]
Length = 724
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 24/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C CG + + +G+ CV CG V + +++ + +G + VG T +
Sbjct: 34 CGDCGGTIIEYDAAAGNGFCVGCGTVVEENAIVSEVVFGESSSGAAIVQGSFVGQGATHA 93
Query: 59 ALN--YKEKKIYES-NKLIDELTFKLDLTGQ--------RSIQIKNMIDKITDGEFGLGD 107
+ Y ++ ES + ID + K+ G ++ I+ M + +F G
Sbjct: 94 RMGGPYGKRNTSESREQTIDNASRKIRNVGALMRLSEVVQTAAIR-MYTLALEHKFTKGR 152
Query: 108 WFPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I C Y+ R + ++ + + + +L +V++LG ++V+ LNL+LP VD
Sbjct: 153 KNMNVIAVCLYIACRQKETRNYMLIDFSDLLQVNVFDLGHTFLQLVQTLNLRLPLVDPSH 212
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ R + L F DE+ ++ V L+ + +++ GRRP + A L+
Sbjct: 213 Y---IARFAALLEFG--DET--PKVAADAVRLVARFDRDWMSRGRRPAGICGACLLLAAR 265
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N ++ V + V T +KR E
Sbjct: 266 MNNFRRSVQEVVQVVKIADTTLKKRLDEF 294
>gi|324501334|gb|ADY40597.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1113
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 107/276 (38%), Gaps = 39/276 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYV----------- 49
C CGS + + G CV CG+V ++ D R G V
Sbjct: 5 CPHCGSSEIDDDATRGDSTCVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQR 64
Query: 50 HVGTAGTGSALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H + G L ++E + + KLI E+ +L + N F G
Sbjct: 65 HTFSGVPG--LPHQEPREVTYMKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRG 122
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ AC Y+ RL++ + + + + V +V++LGR + + L + LP D
Sbjct: 123 RMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFDLGRTLNFLARSLKINLPTTDPC- 181
Query: 167 MFERVIRNSRLQGF-------TNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
++ ++R + L F +L ++ RM++ W + TGRRP + A
Sbjct: 182 LY--ILRFAVLLEFGEKEKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGA 228
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
LV + I ++ + VH + RKR E
Sbjct: 229 ALVLAARCYNFNRTIGDIVRVVHISETVVRKRLDEF 264
>gi|294914332|ref|XP_002778249.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239886452|gb|EER10044.1| Transcription factor IIIB 90 kDa subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 564
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 12/181 (6%)
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
+L+L + K + F G ++ AC Y+V R D + + + VL+
Sbjct: 77 RLELPTSTMDEAKRLFSLAAQRNFTAGRKTSVVAAACLYIVCRRDRTPYLLIDFSDVLHV 136
Query: 140 DVYELGRMITRVVEFLN----LKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+G+M ++V L+ L +P +D ER + L N ++
Sbjct: 137 SVREIGQMYMKLVRLLSLDKVLDIPVIDPSMFMERFSSHLGLGDKQN-------QVVHTA 189
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254
+ L+ + ++ TGRRP + A L+ +GV +V +VA V VT ++R E
Sbjct: 190 IRLIQLMSRDWICTGRRPTGLCGAALLIAARYHGVENVTANSVAGVVRIGAVTLKRRLYE 249
Query: 255 L 255
L
Sbjct: 250 L 250
>gi|393796911|ref|ZP_10380275.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 303
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 108/300 (36%), Gaps = 53/300 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG K + ++ +G L C CG V ++F N D T + +H
Sbjct: 12 CPSCGDKKMITDETTGELFCGRCGFVMSEKISDTGAEWRSFANDDTNRTRVGAGTSLTMH 71
Query: 51 -------VGTA---GTGSALNYKEKKIYESNKL---------------------IDELTF 79
+G A TG L K E + +D+L
Sbjct: 72 DMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKD 131
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + +VA +N
Sbjct: 132 KLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGINI 191
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ V++L
Sbjct: 192 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAVVIL 241
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
A K + G+ PM + A L G ++++ T VT R R L + L
Sbjct: 242 EQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIRNRCAGLRKML 301
>gi|148642484|ref|YP_001272997.1| transcription initiation factor IIB [Methanobrevibacter smithii
ATCC 35061]
gi|222446016|ref|ZP_03608531.1| hypothetical protein METSMIALI_01665 [Methanobrevibacter smithii
DSM 2375]
gi|261349445|ref|ZP_05974862.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
gi|189029858|sp|A5UKA1.1|TF2B_METS3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|148551501|gb|ABQ86629.1| transcription initiation factor TFIIB (zinc-binding)
[Methanobrevibacter smithii ATCC 35061]
gi|222435581|gb|EEE42746.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2375]
gi|288861808|gb|EFC94106.1| transcription initiation factor IIB [Methanobrevibacter smithii DSM
2374]
Length = 310
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 103/302 (34%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + ++C CG+V +AFD+ R G Y
Sbjct: 14 CPECGSTELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 72
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQIKNMIDK------------ 97
+ G + ++++ K IY + + + QR I+I ++
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 132
Query: 98 --------------------ITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
D + G ++ A Y R + + E+A V
Sbjct: 133 SSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 192
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G + + +
Sbjct: 193 RVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EAQSRAIE 242
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 243 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 302
Query: 258 AL 259
L
Sbjct: 303 QL 304
>gi|148909769|gb|ABR17974.1| unknown [Picea sitchensis]
Length = 746
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 111/294 (37%), Gaps = 59/294 (20%)
Query: 3 CTSCGSKTLT-REDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL- 60
C+ CG T R+DI+G + C CG V D +Y D PT V TAG S
Sbjct: 4 CSYCGKDQPTERDDINGFICCTGCGRV-----LDDNIYSSD-PT----FVKTAGGQSQFS 53
Query: 61 -NYKEKKIYES-----NKLIDELTFKLDLTGQ-------------RSIQIKNMIDKITDG 101
N+ + Y S L+ E FK D + S+ + D + G
Sbjct: 54 GNFIKDGQYSSYGRLGGDLVHEYGFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAG 113
Query: 102 E----------FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRV 151
F G + AC Y+V R + K + + + VL +VY LG + ++
Sbjct: 114 HRLYIIAVERNFTRGRRTKQVAAACLYIVCRQEQKPFLLIDFSDVLQINVYVLGAVFLQL 173
Query: 152 VEFLNLKL---------PEVDIVSMFERVI-RNSRLQGFTNLDESMLDRMRKQGVLLLNC 201
+ L L+ P + I +R++ R + + F ++ + L +L +
Sbjct: 174 CKLLRLEQHPIIQKPVDPSLFIHRFADRLVGRATTRKQFHSIANTAL-------RILASM 226
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
W + TGR+P V A L +G +V VH T KR E
Sbjct: 227 KRDW-MQTGRKPSGVCGAALYISALSHGFGCTKADVVSIVHICEGTLTKRLIEF 279
>gi|289192865|ref|YP_003458806.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
gi|288939315|gb|ADC70070.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus sp. FS406-22]
Length = 334
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 107/303 (35%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 38 CPICGSKEVVKDYERAEIVCAKCGCVIKEKLFDIGPEWRAFDHEQKIKRCRVGAPMTYT- 96
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNM-----------IDKI 98
+ G + ++++ K Y + ++ L QR I++ + +D+I
Sbjct: 97 IHDKGLSTVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRI 156
Query: 99 TDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASV 136
T + GL G ++ A Y R + E+A
Sbjct: 157 T-SKLGLPRHVRENAAIIYRGAVDKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEA 215
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D E+GR + LN+KL + + R L G + + +
Sbjct: 216 SRVDRKEIGRTYRFLARELNIKLTPTNPIDYVPRFASELGLPG----------EVESKAI 265
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+L A + LT+GR P V A + L G VA+ T VT R RYKEL
Sbjct: 266 QILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELT 325
Query: 257 EAL 259
E L
Sbjct: 326 EHL 328
>gi|223478727|ref|YP_002582898.1| transcription initiation factor iiB [Thermococcus sp. AM4]
gi|214033953|gb|EEB74779.1| Transcription initiation factor iiB [Thermococcus sp. AM4]
Length = 303
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 113/307 (36%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G L+C CG V +AFD R G P + +
Sbjct: 7 CPVCGSTEFFFDRTRGELVCRVCGYVLEENVIDEGPEWRAFDPDQRARRARTGAPMTLMI 66
Query: 50 HVGTAGTGSALNYKEK------------------KIYESNKLIDE-----LTFKLDLTGQ 86
H G + +++++K ++++ I++ L F L +
Sbjct: 67 H--DKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 87 RSIQIKNMIDKITDGEFGL-----------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ Q++ + ++ + L G ++ A Y R++ + E+A
Sbjct: 125 MAAQMR-LPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAR 183
Query: 136 VLNCDVYELGRMITRVVEFLNLKL---PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
V E+GR + L L L +D V F + + + +
Sbjct: 184 VSKVTKKEIGRSYRFMARGLGLNLRPTSPIDYVDRFGDAL-------------GVSSKTK 230
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
++ +L A+K +T+G+ P + A L L G VA+ H T VT R RY
Sbjct: 231 QRAKEILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRY 290
Query: 253 KELLEAL 259
KEL+E L
Sbjct: 291 KELVEKL 297
>gi|240102532|ref|YP_002958841.1| transcription initiation factor IIB [Thermococcus gammatolerans
EJ3]
gi|239910086|gb|ACS32977.1| Transcription initiation factor TFIIB (tfb) [Thermococcus
gammatolerans EJ3]
Length = 303
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 113/307 (36%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G L+C CG V +AFD R G P + +
Sbjct: 7 CPVCGSTEFFFDRTRGELVCRVCGYVLEENVVDEGPEWRAFDPDQRARRARTGAPMTLMI 66
Query: 50 HVGTAGTGSALNYKEK------------------KIYESNKLIDE-----LTFKLDLTGQ 86
H G + +++++K ++++ I++ L F L +
Sbjct: 67 H--DKGLSTDIDWRDKDIHGNQITGMYRSKLRRLRMWQRRMRINDAAERNLAFALSELDR 124
Query: 87 RSIQIKNMIDKITDGEFGL-----------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ Q++ + ++ + L G ++ A Y R++ + E+A
Sbjct: 125 MAAQMR-LPRRVKEAAAALYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIAR 183
Query: 136 VLNCDVYELGRMITRVVEFLNLKL---PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
V E+GR + L L L +D V F + + + +
Sbjct: 184 VSKVTKKEIGRSYRFMARGLGLNLRPTSPIDYVDRFGDAL-------------GVSSKTK 230
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
++ +L A+K +T+G+ P + A L L G VA+ H T VT R RY
Sbjct: 231 QRAKEILQEAIKRGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRY 290
Query: 253 KELLEAL 259
KEL+E L
Sbjct: 291 KELVEKL 297
>gi|329765337|ref|ZP_08256917.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138243|gb|EGG42499.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 303
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 107/300 (35%), Gaps = 53/300 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C SCG K + ++ +G L C CG V ++F N D T + +H
Sbjct: 12 CPSCGDKKMITDETTGELFCGRCGFVMSEKISDTGAEWRSFANDDTNRTRVGAGTSLTMH 71
Query: 51 -------VGTA---GTGSALNYKEKKIYESNKL---------------------IDELTF 79
+G A TG L K E + +D+L
Sbjct: 72 DMGLSTVIGPANKDSTGKPLTSSMKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKD 131
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + +VA +N
Sbjct: 132 KLALTDAVVEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGINI 191
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ V +L
Sbjct: 192 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAVAIL 241
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
A K + G+ PM + A L G ++++ T VT R R L + L
Sbjct: 242 EQAKKIGMVAGKDPMGIAAAALYLACISTGEIKSQKDISIASGVTEVTIRNRCAGLRKML 301
>gi|164660340|ref|XP_001731293.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
gi|159105193|gb|EDP44079.1| hypothetical protein MGL_1476 [Malassezia globosa CBS 7966]
Length = 660
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEV 162
F LG + +C YV R+ + + + A V+ +V+ LGR R++ LNL++P +
Sbjct: 127 FVLGRKSDYTVASCLYVACRMAKTTHMLIDFADVIQVNVFVLGRSYLRLLRVLNLQIPLI 186
Query: 163 DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
D R + L+ + D R L+ + W + GRRP + A L+
Sbjct: 187 DPSFYISRFA--ALLEFGDETQRVVTDATR----LVTRFKMDW-MVEGRRPAGICGACLL 239
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N I + + V VT RKR +E
Sbjct: 240 LAARMNHFRRSITEIVQVVKIADVTLRKRLEEF 272
>gi|393904948|gb|EFO21323.2| BRF1 protein [Loa loa]
Length = 859
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 29/271 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CGS + + G C+ CG V + + ++ G + VG
Sbjct: 5 CPNCGSSEIDDDAARGDSTCMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQP 64
Query: 53 TAGTG-SALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
T +G L+++E + Y+ KLI+E+ +L + N F G
Sbjct: 65 TNLSGVPGLSHQESREITYYKGRKLIEEIASQLRINQHCVNTAFNFFKMCVSRNFTRGRV 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD----I 164
++ AC Y+ RL++ + + + + + +V++LGR + + L + LP D I
Sbjct: 125 RSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRTLNFLTRSLKINLPTTDPCMYI 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
+ + ++ + +L ++ RM++ W + TGRRP + A L+
Sbjct: 185 LRFAVSLDFGTKQKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGAALLLA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + +V + VH + +KR E
Sbjct: 234 ARCYNFNRTVADVVRVVHISEAVVKKRLDEF 264
>gi|312080782|ref|XP_003142747.1| BRF1 protein [Loa loa]
Length = 866
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 29/271 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CGS + + G C+ CG V + + ++ G + VG
Sbjct: 5 CPNCGSSEIDDDAARGDSTCMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQP 64
Query: 53 TAGTG-SALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
T +G L+++E + Y+ KLI+E+ +L + N F G
Sbjct: 65 TNLSGVPGLSHQESREITYYKGRKLIEEIASQLRINQHCVNTAFNFFKMCVSRNFTRGRV 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD----I 164
++ AC Y+ RL++ + + + + + +V++LGR + + L + LP D I
Sbjct: 125 RSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRTLNFLTRSLKINLPTTDPCMYI 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
+ + ++ + +L ++ RM++ W + TGRRP + A L+
Sbjct: 185 LRFAVSLDFGTKQKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGAALLLA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + +V + VH + +KR E
Sbjct: 234 ARCYNFNRTVADVVRVVHISEAVVKKRLDEF 264
>gi|13541914|ref|NP_111602.1| transcription initiation factor IIB [Thermoplasma volcanium GSS1]
gi|21363020|sp|Q979Q3.1|TF2B1_THEVO RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|14325345|dbj|BAB60249.1| transcription initiation factor B [TFB] [Thermoplasma volcanium
GSS1]
Length = 312
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 106/304 (34%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L R+ G L+C CG V +AFD+ + R G P +
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESRARAGSPMTFTI 75
Query: 50 HVGTAGT----------GSAL---------------------NYKEKKIYESNKLIDELT 78
H T G ++ N E+ + ++ + ++ +
Sbjct: 76 HDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERMA 135
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
F L + + K G ++ Y R+ + + E+ASV
Sbjct: 136 FNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVTR 195
Query: 139 CDVYELGRMITRVVEFLNLK-LPEV--DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
E+GR + +L L +P D +S F + L SM R +
Sbjct: 196 VKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRF-----------CSKLKLSM--DTRNKA 242
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A LT+G+ P V A + + G VA+ T VT R RYKEL
Sbjct: 243 LEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYKEL 302
Query: 256 LEAL 259
E L
Sbjct: 303 TEKL 306
>gi|327401743|ref|YP_004342582.1| transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
gi|327317251|gb|AEA47867.1| Transcription initiation factor IIB [Archaeoglobus veneficus SNP6]
Length = 329
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 106/301 (35%), Gaps = 54/301 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L R+ G IC CG+V +AFD+ + R G P +
Sbjct: 33 CPECGSPRLIRDYRRGEFICQDCGLVIEETYIDAGPEWRAFDSEQKEKRSRVGAPVTYTI 92
Query: 50 HVGTAGT----------GSALNYK-----------EKKIYESNKLIDELTFKLD------ 82
H T G A++ + +++I SN L F L
Sbjct: 93 HDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLRKWQRRIRISNATERNLAFALSELDRMA 152
Query: 83 --LTGQRSIQIKNMI--DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
L +S++ + K D G ++ A Y R + E+A+
Sbjct: 153 SALGLPKSVRETAAVIYRKAVDKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIATYSR 212
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
D E+GR + L LKL R L G ++K+ + +
Sbjct: 213 VDRKEIGRTYRFIARELGLKLMPTSPADYVPRFCAALGLSG----------DVQKKAIEI 262
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ A + LT+GR P V A + L G VA+ T VT R RYKEL E
Sbjct: 263 IKKAEEKELTSGRGPTGVAAAAIYIASILGGERRTQREVAEVAGVTEVTIRNRYKELAER 322
Query: 259 L 259
L
Sbjct: 323 L 323
>gi|161528495|ref|YP_001582321.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160339796|gb|ABX12883.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 315
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 53/292 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C +CG K + ++ +G L C CG V ++F N + T + +H
Sbjct: 24 CPACGDKKMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNKARTGAGTSLTMH 83
Query: 51 -------VGTA---GTGSALNYK---------------------EKKIYESNKLIDELTF 79
+G A TG L+ ++ + ++ +D+L
Sbjct: 84 DMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKD 143
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + +VA +N
Sbjct: 144 KLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGINI 203
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ + +L
Sbjct: 204 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAIAIL 253
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
N A K + G+ PM + A L G ++++ T VT R R
Sbjct: 254 NEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNR 305
>gi|14195251|sp|Q9P9I7.1|TF2B_METTL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|6735522|emb|CAB69073.1| archaeal transcription factor B [Methanothermococcus
thermolithotrophicus]
Length = 339
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 112/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C +CG V +AFD+ R GP Y
Sbjct: 43 CPMCGSKNIIKDYERAEIVCETCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGPPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
D E+GR + LN++L + + R +L G + +
Sbjct: 220 GSRVDRKEIGRTYRFISRELNIRLTPTNPIDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L+G VA T VT R RYKEL
Sbjct: 270 ISILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|358254676|dbj|GAA56126.1| transcription initiation factor brf1 [Clonorchis sinensis]
Length = 729
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 107/260 (41%), Gaps = 28/260 (10%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL 60
M CT CG + + L+C+ CG+V + + +++ + G+ VG +
Sbjct: 1 MRCTHCGGTSFDEDRARADLVCLDCGMVLSENVICSEVEFVETSAGVSAAVGRFVSD--- 57
Query: 61 NYKEKKIYESNKLIDELTFKLDL-----TGQRSIQIKNMIDKITDGEFGLGDWFPILIGA 115
E+ + ID + L L T + IT G L + +
Sbjct: 58 --------ETRRRIDTICGHLRLGNDIATSAFRFYQSALFRGITRGRGALQ-----VAAS 104
Query: 116 CSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNS 175
C Y+ R +L + +++ + +VY LG T + L+L +PE+D ER S
Sbjct: 105 CVYLAARQLRVNLMLLDLSDAVGINVYVLGHCYTELRRRLHLSIPEMDPCLYIERFA--S 162
Query: 176 RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIE 235
+L+ + MR LL K +LTTGRRP + A L+ ++ + E
Sbjct: 163 QLEFGDKMPVVATTAMR-----LLQRMKKDWLTTGRRPSGLAAAALLVAARIHEFNRNEE 217
Query: 236 NVAKEVHCTVVTCRKRYKEL 255
+VA+ + T RKR +E
Sbjct: 218 DVARIARISQQTARKRLEEF 237
>gi|148234621|ref|NP_001087739.1| transcription factor IIIB 50 kDa subunit [Xenopus laevis]
gi|82181280|sp|Q66IW8.1|BRF2_XENLA RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|51704043|gb|AAH81158.1| MGC84252 protein [Xenopus laevis]
Length = 396
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
I++G C Y+ R + + + S++ + +V+ L + +P + + ++ +
Sbjct: 116 IIVGCCVYITCRQQQWPITMGTICSLIYAKKELFASLFMDIVQVLKVDVPSISLQNLVKS 175
Query: 171 VIRNSRLQGFTNLDE------SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R+ +L F + E LD + ++ V + A + +L TGR P+P++ A
Sbjct: 176 HCRSFKL--FKDSSEVPPQYAEKLDTVSERTVQTVELAYETWLVTGRHPIPMITAAAYIS 233
Query: 225 VELNGVS----------VKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV 274
+ S K+ +V T+ R KEL E L+K+A LPW K +++
Sbjct: 234 WQSFQPSRRLSCSLSRFCKLSDVDMPPPSTI-----RLKELQETLIKLAYHLPWLKILSL 288
Query: 275 --KNVLKN 280
KN++++
Sbjct: 289 NRKNIVQH 296
>gi|407462627|ref|YP_006773944.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046249|gb|AFS81002.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 303
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 108/292 (36%), Gaps = 53/292 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C +CG K + ++ +G L C CG V ++F N + T + +H
Sbjct: 12 CPACGDKKMITDENTGELFCGKCGFVVSDKIADTGAEWRSFSNDEGNKARTGAGTSLTMH 71
Query: 51 -------VGTA---GTGSALNYK---------------------EKKIYESNKLIDELTF 79
+G A TG L+ ++ + ++ +D+L
Sbjct: 72 DMGLSTVIGAANKDSTGKPLSASVKSSIERLRTWDSRSQAHSSADRNLRQALNEMDKLKD 131
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R + + +VA +N
Sbjct: 132 KLALTDAVIEKAAYIYRKAMEKKLVRGRSIQGLVAACLYASCRNTETPRTLDDVAKGINI 191
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L LK+P VD V SR+ L E + +++ + +L
Sbjct: 192 RRKDVARCYRLIFRELELKMPVVDPVKGV------SRIASIAELSE----KSKRKAIAIL 241
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
N A K + G+ PM + A L G ++++ T VT R R
Sbjct: 242 NEAKKMGVVAGKDPMGIAAAALYLACISTGEVKSQKDISIASGVTEVTIRNR 293
>gi|195570167|ref|XP_002103080.1| GD20238 [Drosophila simulans]
gi|194199007|gb|EDX12583.1| GD20238 [Drosophila simulans]
Length = 662
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHSLCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|198451369|ref|XP_001358335.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
gi|198131458|gb|EAL27473.2| GA16127 [Drosophila pseudoobscura pseudoobscura]
Length = 665
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C +CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNTRGDRVCTNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAE 270
>gi|321468451|gb|EFX79436.1| hypothetical protein DAPPUDRAFT_304854 [Daphnia pulex]
Length = 638
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 30/274 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFD------NYDAQLYGRDGPTGIYVHV-GTAG 55
C SCG + ++ G ++C +CGVV + ++ YG G +V G
Sbjct: 6 CKSCGGTDVEVDNARGIVVCTNCGVVLEENCIVSEVQFEENAYGGASAIGQFVSSENQGG 65
Query: 56 TGSALNYKEKKIYESNKL-IDELTFKLDLTGQRSIQIKNMIDKITD-------GEFGLGD 107
TG +Y+ +S ++ + K+ GQ+ ++ ID + G
Sbjct: 66 TGFINSYRGGNGKQSREITMKRAREKITTMGQQLNLNQHCIDMAVNFYAMALTRHLTNGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---- 163
+ AC Y+ R++ + + ++A V++ DVY LG ++ + NL +P VD
Sbjct: 126 KSSHTVAACIYITCRMEGTAHLLIDIADVIDIDVYTLGHNFMQIAKTFNLSIPSVDPCLY 185
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
++ R+ + + ++ RM++ W + TGRRP + A L+
Sbjct: 186 VMRYANRMNFGDKTHEVSRTALRLVQRMKRD----------W-IHTGRRPSGLCGAALLL 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+G + + +V +EV T RKR +E E
Sbjct: 235 AARFHGFNRTVVDVIREVKVHENTVRKRMQEFGE 268
>gi|16081986|ref|NP_394398.1| transcription initiation factor IIB [Thermoplasma acidophilum DSM
1728]
gi|14195243|sp|Q9HJM7.1|TF2B1_THEAC RecName: Full=Transcription initiation factor IIB 1; Short=TFIIB 1
gi|10640255|emb|CAC12069.1| transcription initiation factor IIB related protein [Thermoplasma
acidophilum]
Length = 312
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 104/305 (34%), Gaps = 62/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G L+C CG V +AFD+ + R G Y
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESRARAGSPMTYT- 74
Query: 51 VGTAGTGSALNYKEKKIY-ESNKLIDELTFKLDLTGQRSIQIKNMID------------- 96
+ G + +++K K Y S + Q+ I++ N +
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERM 134
Query: 97 -------------------KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
K G ++ Y R+ + + E+ASV
Sbjct: 135 ASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 138 NCDVYELGRMITRVVEFLNLK-LPEV--DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+GR + +L L +P D +S F + L SM R +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRF-----------CSKLKLSM--DTRNK 241
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+ +L A LT+G+ P V A + + G VA+ T VT R RYKE
Sbjct: 242 ALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYKE 301
Query: 255 LLEAL 259
L E L
Sbjct: 302 LTEKL 306
>gi|195144240|ref|XP_002013104.1| GL23944 [Drosophila persimilis]
gi|194102047|gb|EDW24090.1| GL23944 [Drosophila persimilis]
Length = 665
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 104/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C +CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNTRGDRVCTNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMVDVIGVVKIHESTLRKRLSEFAE 270
>gi|322370540|ref|ZP_08045098.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
gi|320549957|gb|EFW91613.1| Transcription factor TFIIB cyclin-related protein [Haladaptatus
paucihalophilus DX253]
Length = 328
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 63/304 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG ++ E G +C CG+V +AFD+ + R G PT +
Sbjct: 32 CPECGGNVISDEG-RGETVCAECGLVVEEDSVDRGPEWRAFDSKEKDQKSRVGAPTTKMM 90
Query: 50 HVGTAGTGSALNYKEKKIY---------ESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
H G + + +++K Y E + + + + +K + +I
Sbjct: 91 H--DKGLSTNIGWQDKDAYGNTLGSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 148
Query: 101 GEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEVA 134
LG P + + V+ R LDD LP + EVA
Sbjct: 149 MASALG--LPKNVRETASVIYRRALDDDLLPGRSIEGVATSAVYAAARQTGVPRSLDEVA 206
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
+V D E R +V L L++ D +S R ++LD + D ++
Sbjct: 207 AVSRIDEMEFKRTYRYIVRELGLEIQPADPLSYVSRFA--------SDLD--ISDESERR 256
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
LL A + + +G+ P+ + A + L+ V V+ + + VT R RY+E
Sbjct: 257 AKDLLKTAKEQGVHSGKSPVGLAAAAVYAGSLLSNEKVTQSEVSDVANVSEVTIRNRYQE 316
Query: 255 LLEA 258
LLEA
Sbjct: 317 LLEA 320
>gi|195501939|ref|XP_002098010.1| GE24172 [Drosophila yakuba]
gi|194184111|gb|EDW97722.1| GE24172 [Drosophila yakuba]
Length = 666
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|291229961|ref|XP_002734942.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 392
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C Y+ R ++ + I+ + ++ C + + ++ L++++ V + E
Sbjct: 123 VLNGCCVYISCRQENWPVTIAFICDLIQCSRQDFNSVYKSLLSQLDIQITSVCV----ED 178
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
V+++ L F + +++ K +L A ++++GR PV A V++V + +
Sbjct: 179 VVKH-LLNKFGFEEPEFVNKTMK----VLQLAKDAWISSGRAAEPVATAA-VYIVWKSQI 232
Query: 231 SVKIENVAKEVHCTV------VTCRKRYKELLEALVKVAQALPW--GKDVTVKNVLKNAP 282
+V ++NV + C V K+ KE+ + L+ +A +PW K VT KN+
Sbjct: 233 NVSVKNVGFKNFCAVHGIGSYCNILKKVKEIQQTLLILAHQIPWVDNKMVTQKNISSYLN 292
Query: 283 FVMNYMEMKSMEKR 296
++NY KS++ R
Sbjct: 293 EILNY--EKSLKSR 304
>gi|452821127|gb|EME28161.1| hypothetical protein Gasu_43270 [Galdieria sulphuraria]
Length = 255
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 24/229 (10%)
Query: 18 GSLICVSCGVV-----------QAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNYKEKK 66
G+++C +CG+ Q + + GR P+ + + + +
Sbjct: 31 GTIVCSNCGLAFEEESSLLQLGQERETRGSSFIGRSSPSFQCSYSFYKDSTTRQERATRM 90
Query: 67 IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG-DWFPILIGACSYVVMRLDD 125
++ K E+ KL L G + +++ + + W AC Y+V R+
Sbjct: 91 LFNKCK---EIVGKLALDGGLLTPLDSLVTRTALLVWPCHKHWLSASCAACVYIVARMHF 147
Query: 126 KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDE 185
K++ +++ + C V E GR+ ++V L L +P D ++ RV F + ++
Sbjct: 148 KAVNMTDCSIAARCMVSETGRVYQQLVAELELAIPPGDPFALLWRVCHILLTCLFPDSEK 207
Query: 186 SMLDRMRKQGVLL-LNCAVKWF-----LTTGRRPMPVVVAVLVFVVELN 228
R G L L+C + W+ L TGR+P+ +V+A N
Sbjct: 208 ---QRSCSLGNLYHLSCNLLWYAEQRWLLTGRKPIHIVIAASTLAATYN 253
>gi|424813973|ref|ZP_18239151.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
gi|339757589|gb|EGQ42846.1| transcription initiation factor TFIIB [Candidatus Nanosalina sp.
J07AB43]
Length = 360
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 108/302 (35%), Gaps = 56/302 (18%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIY 48
+ C+ CG + + G LIC+SCG V +AF+ + + R G Y
Sbjct: 61 LTCSECGGQQFEEDSSKGELICISCGTVIDEDRIDKSAEYRAFNAEEKEKKARAGQPLTY 120
Query: 49 VH----VGTA-GTGSALNYK---------------EKKIYESNKL--------IDELTFK 80
V T G GS YK K++ +S ++ +
Sbjct: 121 TKHDMGVSTEIGKGSGELYKVSGNKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISN 180
Query: 81 LDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140
L+L + + +K D G +I A Y+V R + E++ +
Sbjct: 181 LNLPESVHEETARLYEKSVDQGLVRGRSMESIISAIIYIVARKQGTPRTLDEISDASGIE 240
Query: 141 VYELGRMITRVVEFLNLK-LPE--VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR V L L+ LP D V F G L + R R+
Sbjct: 241 KREIGRAYRYVARELGLRILPAKPQDYVPRF---------AGKLQLSGEVQARARQ---- 287
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+L A + L +G+ P + A L L G VA V T VT R RYKEL E
Sbjct: 288 ILKEARERDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYKELAE 347
Query: 258 AL 259
L
Sbjct: 348 KL 349
>gi|397779601|ref|YP_006544074.1| transcription initiation factor IIB [Methanoculleus bourgensis MS2]
gi|396938103|emb|CCJ35358.1| Transcription initiation factor IIB Short=TFIIB [Methanoculleus
bourgensis MS2]
Length = 337
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C SCG+V +AFD+ R G P +
Sbjct: 41 CPECGSRQLVHDYERAELVCQSCGLVLDEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 100
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 101 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 154
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
VA V E+GR + L LKL + R L+G ++
Sbjct: 215 VAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKG----------EVQ 264
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 265 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 324
Query: 253 KELLEAL 259
KEL E L
Sbjct: 325 KELAEKL 331
>gi|156938159|ref|YP_001435955.1| transcription initiation factor IIB [Ignicoccus hospitalis KIN4/I]
gi|189029852|sp|A8AC96.1|TF2B_IGNH4 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|156567143|gb|ABU82548.1| Transcription initiation factor IIB (TFIIB) [Ignicoccus hospitalis
KIN4/I]
Length = 316
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 113/304 (37%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + + +G +C CG + +AF + + GR G P +
Sbjct: 11 CPVCGSTDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRGRTGAPLSPTL 70
Query: 50 HVGTAGTGSALNYKEK----------KIYESNKL-----------------------IDE 76
H G + ++++++ K E +L +D
Sbjct: 71 H--DHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDR 128
Query: 77 LTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ L+L Q + + K + G ++ A Y R+ + + E+A
Sbjct: 129 MANLLNLPKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKK 188
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
L + E+ R + + L LK+P D + R+ +L+G ++ E + M K
Sbjct: 189 LEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLRG--DIIEYAMKIMEK--- 243
Query: 197 LLLNCAVKWF-LTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+K +T G+ P + AV+ V G + +A T VT R RYKE+
Sbjct: 244 ------IKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRYKEI 297
Query: 256 LEAL 259
++ L
Sbjct: 298 MKVL 301
>gi|68072423|ref|XP_678125.1| transcription factor IIIb subunit [Plasmodium berghei strain ANKA]
gi|56498490|emb|CAH96336.1| transcription factor IIIb subunit, putative [Plasmodium berghei]
Length = 728
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 112/278 (40%), Gaps = 18/278 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGTGS 58
C +C S + + G +IC+ CG V + L + G VG ++GT S
Sbjct: 3 CKNCQSSDIETNEGQGEIICLRCGSVLEENKIVESLEFVENNNGAISMVGQFIPSSGTKS 62
Query: 59 AL------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ +E + + I ++ L L+ Q + + F +G +
Sbjct: 63 FMLSWGIRESREISLQKGYINIQKIADNLHLSTQHIEAAQRIYLMALQRNFTMGRNNSYV 122
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L LG+ +++ L++ +P +D ER
Sbjct: 123 AASCLYTICRREKSPIMLIDFSDILQT-PKPLGKTFLKLLRLLHISVPNIDPSLFLERFA 181
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + ++ G+ L+ + +++TGRRP + A L+ ++G+++
Sbjct: 182 YKLNLKN-------DIYKVTYTGIKLIQAMTRDWISTGRRPTGLCGASLLIATRIHGINI 234
Query: 233 KIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGK 270
+A+ V + T KR E + +A + K
Sbjct: 235 NSNTIAEVVRISNPTIIKRLYEFKNTNIAKIKASEFDK 272
>gi|150863862|ref|XP_001382483.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
gi|149385118|gb|ABN64454.2| Transcription factor IIIB 70 kDa subunit (TFIIIB) (B-related
factor) (BRF) [Scheffersomyces stipitis CBS 6054]
Length = 570
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 41/277 (14%)
Query: 3 CTSCGSKTLTREDIS--GSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------- 53
C +CG TR+ + G + C+ CG V + +++ + +G + G
Sbjct: 8 CANCGHTAFTRDRFTNAGDISCLRCGTVMEENPIVSEVQFGESSSGAAMVQGAMVGADQA 67
Query: 54 ----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL---- 105
G +A+ +E+ + + I ++ L +I + I + G F L
Sbjct: 68 RASYGGRQNAMESREQTLSNGKRKIRKIAHAL--------KIADYIAESAGGWFKLALTQ 119
Query: 106 ----GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLP 160
G ++ AC YV R + + + +S L VY LG ++V+ LN+ KLP
Sbjct: 120 NFVQGRRSQNVLAACLYVACRKERTHHMLIDFSSRLQISVYSLGATFLKLVKALNIVKLP 179
Query: 161 EVDIVSMFERVIRNSRLQGFT-NLD-ESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
D S+F +Q F LD + ++ K V L + ++ GRRP +
Sbjct: 180 LAD-PSIF--------IQHFAEKLDFKEKATKVVKDAVKLAHQMSSDWIDAGRRPAGIAG 230
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A ++ +N + H T +KR E
Sbjct: 231 ACVLLAARMNNFRRTHSEIVAVAHVAEETLQKRLNEF 267
>gi|195443968|ref|XP_002069658.1| GK11456 [Drosophila willistoni]
gi|194165743|gb|EDW80644.1| GK11456 [Drosophila willistoni]
Length = 691
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 105/274 (38%), Gaps = 23/274 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEAGHGAVAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTLVDVIGVVKIHESTLRKRLSEFAET 271
>gi|195391494|ref|XP_002054395.1| GJ22828 [Drosophila virilis]
gi|194152481|gb|EDW67915.1| GJ22828 [Drosophila virilis]
Length = 666
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEMGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ + I L +L LT + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKRDITLLCQQLQLTQHYADTALNFFKMALHRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGPKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHEFSRTLADVIGVVKIHESTLRKRLSEFAE 270
>gi|194900456|ref|XP_001979773.1| GG16780 [Drosophila erecta]
gi|190651476|gb|EDV48731.1| GG16780 [Drosophila erecta]
Length = 668
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 104/271 (38%), Gaps = 23/271 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTGSA 59
C +CGS + ++ G +C++CG V +++ + G I V +G A
Sbjct: 7 CRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSGGA 66
Query: 60 LNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
NY +E I ++ K I L +L L+ + N G
Sbjct: 67 TNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLTRG 126
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+ AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 127 RKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDPCL 186
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 187 YIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIAAR 239
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 240 MHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|193084026|gb|ACF09700.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote AD1000-202-A2]
Length = 307
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 105/292 (35%), Gaps = 53/292 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA----QLYGRDGPTGIYVHVGTA---- 54
C SC + ++ +G L C CG V+A + + + DG V GT+
Sbjct: 18 CPSCTKAKMVLDENTGELFCSFCGFVEAEKITEGGPEWRSFSNDGGDRSRVGAGTSITMH 77
Query: 55 --------------GTGSALNYKEKKIYESNKL---------------------IDELTF 79
TG L KK E + +D+L
Sbjct: 78 DMGLSTIIGAQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSAERNLRQALSEMDKLKD 137
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R+ + + ++A +N
Sbjct: 138 KLTLTDNVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYAACRITETPRTLDDIAEGINI 197
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L+LK+P D V SR+ L E+ +++ ++LL
Sbjct: 198 KRKDVARSYRIIFRELDLKIPVADPVKGV------SRIASLAGLGEA----TKRKALILL 247
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
N A K + G+ PM + A L G + + ++ T VT R R
Sbjct: 248 NKAKKIGMVAGKDPMGIAAAALYLACISTGGNKTQKEISIASGVTEVTIRNR 299
>gi|195056023|ref|XP_001994912.1| GH17498 [Drosophila grimshawi]
gi|193892675|gb|EDV91541.1| GH17498 [Drosophila grimshawi]
Length = 667
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEMGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ + I L +L LT + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKRDITLLCQQLQLTQHYADTALNFFKMALHRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHEFSRTLADVIGVVKIHESTLRKRLSEFAE 270
>gi|157128816|ref|XP_001655207.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882162|gb|EAT46387.1| AAEL002427-PA [Aedes aegypti]
Length = 609
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 32/275 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGTAG 55
C +CGS + ++ G +C +CG V DN ++ +G G +V + G
Sbjct: 6 CNNCGSAEIEVDNARGDAVCTNCGSVLE-DNIIVSEVQFEENAHGASSAVGQFVASDSKG 64
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G+ +E + ++ + I L +L L N G
Sbjct: 65 GATAYGKFHVGTGTESREVTLRKARQGITHLCHQLHLNNHCIETACNFFKMALIRHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD--- 163
+ AC Y+ R + S + +++ VL YELGR ++ + L + +P +D
Sbjct: 125 RRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQALCINIPSIDPCI 184
Query: 164 -IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
I+ ++ + + + ++ RM+K + +GRRP + A L+
Sbjct: 185 YIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSI-----------HSGRRPSGLCGAALL 233
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S ++ + V T RKR E E
Sbjct: 234 LAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGE 268
>gi|254166941|ref|ZP_04873795.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|254168893|ref|ZP_04875733.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289596150|ref|YP_003482846.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
gi|197622157|gb|EDY34732.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|197624551|gb|EDY37112.1| TFIIB zinc-binding family [Aciduliprofundum boonei T469]
gi|289533937|gb|ADD08284.1| Transcription factor TFIIB cyclin-related protein [Aciduliprofundum
boonei T469]
Length = 312
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 116/294 (39%), Gaps = 40/294 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G L+C+ CG+V +AFD+ R G Y
Sbjct: 16 CPECGSTHLVRDYERGELVCMDCGLVIDESYIDQGPEWRAFDSEQRDSRTRTGAPMTYT- 74
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDK--------ITDG 101
+ G + +++K K Y N L Q+ I++ N ++ +
Sbjct: 75 IHDKGLSTEISWKNKDSYGKNIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELERM 134
Query: 102 EFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFLNL 157
LG P + + V+ R + + + + V+ +Y RM I R +E ++
Sbjct: 135 SSNLG--LPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 158 --KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDR----------MRKQGVLLLNCAVKW 205
++ + +I ++ + R +L + E +DR ++K+ ++ A +
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLNIYPTKPEDYIDRFCSKLKLSGEVKKKAYEIIKMARER 252
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+ +GR P V A + L G VA+ T VT R RYKEL E L
Sbjct: 253 DIISGRGPTGVAAAAIYIAAILMGERRTQREVAEVAGVTEVTIRNRYKELAEKL 306
>gi|157128814|ref|XP_001655206.1| transcription factor IIIB 90 kDa subunit (TFIIIB90) [Aedes aegypti]
gi|108882161|gb|EAT46386.1| AAEL002427-PB [Aedes aegypti]
Length = 644
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 32/275 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGTAG 55
C +CGS + ++ G +C +CG V DN ++ +G G +V + G
Sbjct: 6 CNNCGSAEIEVDNARGDAVCTNCGSVLE-DNIIVSEVQFEENAHGASSAVGQFVASDSKG 64
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G+ +E + ++ + I L +L L N G
Sbjct: 65 GATAYGKFHVGTGTESREVTLRKARQGITHLCHQLHLNNHCIETACNFFKMALIRHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD--- 163
+ AC Y+ R + S + +++ VL YELGR ++ + L + +P +D
Sbjct: 125 RRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQALCINIPSIDPCI 184
Query: 164 -IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
I+ ++ + + + ++ RM+K + +GRRP + A L+
Sbjct: 185 YIMRYANKLEFAEKTHEVSMTAQRLVQRMKKDSI-----------HSGRRPSGLCGAALL 233
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S ++ + V T RKR E E
Sbjct: 234 LAARMHEFSRTPNDIVRIVKIHESTLRKRLVEFGE 268
>gi|340722869|ref|XP_003399823.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
terrestris]
Length = 659
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C +CGS + + G +C CG V ++ ++ P+G + V TG
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 59 A--------LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A +N KE + + + K I L +L L N + + G
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQHCIDTSMNFYKMALNRQLTRGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---- 163
AC Y+ R + + + +++ VL V+ELGR R + L + +P VD
Sbjct: 126 KQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCINIPSVDPCLY 185
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 186 IMRFANKLEFGEKTHEVSMTALRVVQRMKRDSI-----------HSGRRPSGLCGAALLM 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + ++ K V T RKR E
Sbjct: 235 AARLHEFNRSPADIIKIVKVHESTLRKRLIEF 266
>gi|350403589|ref|XP_003486845.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Bombus
impatiens]
Length = 659
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C +CGS + + G +C CG V ++ ++ P+G + V TG
Sbjct: 6 CRNCGSTNIETDPARGDAVCTDCGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 59 A--------LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A +N KE + + + K I L +L L N + + G
Sbjct: 66 ATGFGATYHVNGKESRGITLQNARKGITHLCMQLQLNQHCIDTSMNFYKMALNRQLTRGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---- 163
AC Y+ R + + + +++ VL V+ELGR R + L + +P VD
Sbjct: 126 KQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCINIPSVDPCLY 185
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 186 IMRFANKLEFGEKTHEVSMTALRVVQRMKRDSI-----------HSGRRPSGLCGAALLM 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + ++ K V T RKR E
Sbjct: 235 AARLHEFNRSPADIIKIVKVHESTLRKRLIEF 266
>gi|432948464|ref|XP_004084058.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 690
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDGP-- 44
C +CG + + GS +C SCG V + Q DGP
Sbjct: 6 CKTCGGGDIDVDQARGSAVCTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVK 65
Query: 45 -----TGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
+G + VG L +++I +L +L L N
Sbjct: 66 APLLGSGFHTSVGKESRAQTLQNGKRQI-------QKLGSQLQLNQHCLDTAFNFFKLAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHMLEF-GLKTHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ +++V V T RKR E
Sbjct: 232 ALLVAARMHKFRRSVKDVISVVKVCHTTLRKRLTEF 267
>gi|24647658|ref|NP_650616.2| Brf, isoform A [Drosophila melanogaster]
gi|281361961|ref|NP_001163636.1| Brf, isoform B [Drosophila melanogaster]
gi|15291933|gb|AAK93235.1| LD32109p [Drosophila melanogaster]
gi|23171547|gb|AAF55409.2| Brf, isoform A [Drosophila melanogaster]
gi|220945996|gb|ACL85541.1| Brf-PA [synthetic construct]
gi|272477027|gb|ACZ94932.1| Brf, isoform B [Drosophila melanogaster]
Length = 662
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P +D
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|348536305|ref|XP_003455637.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like
[Oreochromis niloticus]
Length = 700
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 97/276 (35%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDGP-- 44
C +CG + + GS +C SCG V + Q DGP
Sbjct: 6 CRTCGGSDIDVDQARGSAVCTSCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPIK 65
Query: 45 -----TGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
+G + VG L +++ I +L +L L N +
Sbjct: 66 APLLGSGFHTSVGKESRAQTLQNGKRQ-------IQQLGSQLQLNQHCLDTAFNFFKLVV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R T+ E + +R L+ + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHMLEFGAKTH--EVSMTALR-----LVQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ +++V V T RKR E
Sbjct: 232 ALLVAARMHKFRRSVKDVIGVVKVCQTTLRKRLTEF 267
>gi|45357604|ref|NP_987161.1| transcription initiation factor IIB [Methanococcus maripaludis S2]
gi|74556259|sp|Q6M176.1|TF2B_METMP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|45047164|emb|CAF29597.1| transcription initiation factor B [Methanococcus maripaludis S2]
Length = 339
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 111/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK++ ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKSIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|449668786|ref|XP_002161156.2| PREDICTED: transcription factor IIIB 70 kDa subunit-like [Hydra
magnipapillata]
Length = 943
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 109/268 (40%), Gaps = 32/268 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG-VVQAF-----DNYDAQLYGRDGPTGIYV------H 50
C +CG + + G +CVSCG VV++ + G G +V
Sbjct: 278 CKNCGGIEIDNDPARGDSVCVSCGSVVESLCIVNDIEFHENSAGSSSVIGQFVSSEGQNR 337
Query: 51 VGT-AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGE-FGLGDW 108
VG+ + G ++++ + +LI+ ++ ++ + M K+ + F +G
Sbjct: 338 VGSYSKFGVGQDHRQVALENGKQLINNYGGQIKMS-HHCLDSAYMFFKMAASKRFTVGRK 396
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
++GAC Y+V R + + ++ + CD+ LGR+ + L + P VD
Sbjct: 397 TIYVVGACLYLVSRTEKTPHMLLDICDAIQCDIVVLGRVFLALARTLCIDCPIVDPSLYI 456
Query: 169 ERVIRNSRLQGFTNLDESM-----LDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
R N + SM L RM+K + L GRRP + A L+
Sbjct: 457 HRFAHQLDFGDKEN-EVSMAALRILARMKKDWIHL-----------GRRPSALCGAALII 504
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKR 251
+L +V ++++ K V + T KR
Sbjct: 505 AGKLFNFNVTMDDIVKLVRMSKTTVFKR 532
>gi|147919688|ref|YP_686567.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
gi|110621963|emb|CAJ37241.1| transcription initiation factor IIB [Methanocella arvoryzae MRE50]
Length = 337
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 114/309 (36%), Gaps = 66/309 (21%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGI 47
M C CGS+ L + L+C CG+V +AFD+ R G P
Sbjct: 39 MECPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRSRVGAPMTF 98
Query: 48 YVHVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
+H G + ++++ + Y S+K +L ++L QR I++ N ++ + F
Sbjct: 99 TIH--DKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFA 152
Query: 105 LGDW--------FPILIGACSYVVMR-------LDDKSL-------------------PI 130
L + P I S VV R + +S+ +
Sbjct: 153 LSELDRMASALGLPRNIRETSAVVYRKAVSKNLIRGRSIEGVAAAALYAACRQNGVPRTL 212
Query: 131 SEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDR 190
E+A V E+GR + L LKL + R L+G
Sbjct: 213 DEIAEVSRVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLSLKG----------E 262
Query: 191 MRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRK 250
++ + V +L A + LT+GR P V A + L G VA T VT R
Sbjct: 263 VQSKAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRN 322
Query: 251 RYKELLEAL 259
RYKEL E L
Sbjct: 323 RYKELAEEL 331
>gi|194743354|ref|XP_001954165.1| GF16885 [Drosophila ananassae]
gi|190627202|gb|EDV42726.1| GF16885 [Drosophila ananassae]
Length = 665
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALSRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P VD
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSVDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ + + +V V T RKR E E
Sbjct: 238 ARMHDFNRTLLDVIGVVKIHESTLRKRLSEFAE 270
>gi|288931755|ref|YP_003435815.1| transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
gi|288894003|gb|ADC65540.1| Transcription factor TFIIB cyclin-related protein [Ferroglobus
placidus DSM 10642]
Length = 328
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 105/304 (34%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G IC CG+V +AFD+ + R G Y
Sbjct: 32 CPECGSPRLIRDFKRGEFICQDCGLVIEDTYIDSGPEWRAFDSEQREKRSRVGAPITYT- 90
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELT--FKLDLTGQRSIQIKNM-----------IDK 97
+ G + +++ K Y + F+L QR I+I N +D+
Sbjct: 91 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLR-KWQRRIRISNATERNLAFALSELDR 149
Query: 98 ITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ GL G ++ A Y R + E+A+
Sbjct: 150 MASA-LGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAT 208
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
D E+GR + L LKL R L G ++K+
Sbjct: 209 YSRVDRKEIGRTYRFIARELGLKLLPTSPADYVPRFCAALGLSG----------EVQKKA 258
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ ++ A + LT+GR P V A + L G VA+ T VT R RYKEL
Sbjct: 259 IEIIKKAEEKELTSGRGPTGVAAAAIYIASILTGERRTQREVAEVAGVTEVTIRNRYKEL 318
Query: 256 LEAL 259
E L
Sbjct: 319 AEKL 322
>gi|297619914|ref|YP_003708019.1| transcription factor TFIIB cyclin-like protein [Methanococcus
voltae A3]
gi|297378891|gb|ADI37046.1| Transcription factor TFIIB cyclin-related protein [Methanococcus
voltae A3]
Length = 337
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+A V D E+GR + LN++L + V R +L G
Sbjct: 212 LDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG---------- 261
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A K LT+GR P V A + L G VA T VT R
Sbjct: 262 EVESKAISILKDAGKKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 321
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 322 NRYKELTEHL 331
>gi|8099214|gb|AAF72066.1|AF262375_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P +D
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|254580311|ref|XP_002496141.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
gi|238939032|emb|CAR27208.1| ZYRO0C11440p [Zygosaccharomyces rouxii]
Length = 588
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 53/286 (18%)
Query: 1 MPCTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHV 51
+ C +C S ++ + + L+C SCG V A DN + G G Y+
Sbjct: 2 LTCKNCKSTDFVKDVTNANNDLVCQSCGTV-AEDNPIVSEVTFGENSSGAAVVQGSYIGK 60
Query: 52 GTAGTG-------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG--- 101
G +G SAL ++ + + + + ++F L N+ + ITD
Sbjct: 61 GQSGASMSAHGGSSALESRQVTLNNAYRKLRAVSFAL-----------NIPEYITDAAHQ 109
Query: 102 --------EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVE 153
F G +I AC Y+ R + + + +S L VY +G R+V+
Sbjct: 110 WYKLALHYNFVQGRRSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLRMVK 169
Query: 154 FLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTT 209
LN+ KLP D S+F +Q F +L + + ++ K V L + ++
Sbjct: 170 RLNITKLPLAD-PSLF--------IQHFAEKLDLGDKKI-KVAKDAVKLAQRMSRDWMYE 219
Query: 210 GRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 220 GRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETIQQRLNEF 265
>gi|8099212|gb|AAF72065.1|AF262374_1 RNA polymerase III transcription factor BRF [Drosophila
melanogaster]
Length = 662
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 23/273 (8%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRD---GPTGIYVHVGTAGTG 57
+ C +CGS + ++ G +C++CG V +++ + G I V +G
Sbjct: 5 LKCRNCGSNEIEEDNARGDRVCMNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAESSG 64
Query: 58 SALNY-------------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
A NY +E I ++ K I L +L L+ + N
Sbjct: 65 GATNYGYGKFQVGSGTESREVTIKKAKKDITLLCQQLQLSQHYADTALNFFKMALGRHLT 124
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G + AC Y+ R + S + +++ V YELGR ++ L + +P +D
Sbjct: 125 RGRKSTHIYAACVYMTCRTEGTSHLLIDISDVQQICSYELGRTYLKLSHALCINIPSLDP 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R +RLQ E + +R + +C + +GRRP + A L+
Sbjct: 185 CLYIMRFA--NRLQLGAKTHEVSMTALRIVQRMKKDC-----MHSGRRPTGLCGAALLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ S + +V V T RKR E E
Sbjct: 238 ARMHDFSRTMLDVIGVVKIHESTLRKRLSEFAE 270
>gi|256810972|ref|YP_003128341.1| transcription initiation factor IIB [Methanocaldococcus fervens
AG86]
gi|256794172|gb|ACV24841.1| Transcription factor TFIIB cyclin-related [Methanocaldococcus
fervens AG86]
Length = 331
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 106/302 (35%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 35 CPICGSKEVVKDYERAEIVCAKCGCVIKENLFDIGPEWRAFDHEQKIKRCRVGAPMTYT- 93
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNM-----------IDKI 98
+ G + ++++ K Y + ++ L QR I++ + +D+I
Sbjct: 94 IHDKGLSTVIDWRNKDSYGKDLSANKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRI 153
Query: 99 TDG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
T E GL G ++ A Y R + E+A
Sbjct: 154 TSKLGLPRHVRENAAIIYRGAVEKGLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEAS 213
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
D E+GR + L +KL + + R L G + + +
Sbjct: 214 RVDRKEIGRTYRFLARELGIKLTPTNPIDYVPRFASELGLPG----------EVESKAIQ 263
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+L A + LT+GR P V A + L G VA+ T VT R RYKEL E
Sbjct: 264 ILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCRRTQREVAEVAGVTEVTIRNRYKELTE 323
Query: 258 AL 259
L
Sbjct: 324 HL 325
>gi|386875751|ref|ZP_10117910.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386806507|gb|EIJ65967.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 304
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 115/301 (38%), Gaps = 62/301 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA----QLYGRDG---------PTGIYV 49
C CG ++ ++++G C CG V + ++ + + +DG P+ + +
Sbjct: 10 CLRCGKNSILVDEVTGEQFCGKCGYVITEKSQESGPEWRSFQKDGGADPARTGAPSSLMI 69
Query: 50 H----------VGTAGTGSALNYKEKKIYES-------------------------NKLI 74
H + +G L+ K E NKL
Sbjct: 70 HDMGLSTVINPLNKDASGKPLSTSMKSTIERLRTWDSRSQVHAPVDRNLRQALSDLNKLK 129
Query: 75 DELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVA 134
D+++ ++ + + + ++K + G +I A Y R + + +V+
Sbjct: 130 DKVSVPANVLEKAAYIYRKALEK----KLVRGRSISAMIAASLYAACRDTETPRTLKDVS 185
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
N ++ R + L LK+P VD + R+ +S+L+ + ++ ++
Sbjct: 186 DAANVKRKDIARCYRLLHHELELKMPVVDSIQCIARI--SSKLE--------ISEKTKRY 235
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
V +L A + + G+ PM + L NGVS+ ++A+ T VT R RYK
Sbjct: 236 AVKVLKDAQERKESAGKDPMGLAATALYLSCVKNGVSITQRDLAEAAGVTEVTIRNRYKG 295
Query: 255 L 255
L
Sbjct: 296 L 296
>gi|367016367|ref|XP_003682682.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
gi|359750345|emb|CCE93471.1| hypothetical protein TDEL_0G01040 [Torulaspora delbrueckii]
Length = 545
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/355 (19%), Positives = 133/355 (37%), Gaps = 66/355 (18%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQL-YGRD------------GP 44
MP C +C R+ + + L+C +CGVV + +++ +G G
Sbjct: 1 MPVCKACKGTEFERDLSNANNDLVCKNCGVVSEDNPIVSEVTFGETSGGAAVVQGSFIGA 60
Query: 45 TGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
+ G+ G SAL +E + + + + ++ L N+ + ITD F
Sbjct: 61 GQTHASFGSHGGSSALESREATLNNARRKLRAVSHAL-----------NIPEYITDAAF- 108
Query: 105 LGDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITR 150
W+ + +I AC YV R + + + +S L VY +G +
Sbjct: 109 --QWYKLALANNFVQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVGVYSIGATFLK 166
Query: 151 VVEFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWF 206
+V+ L++ KLP D S+F +Q F +L + + +R L + W
Sbjct: 167 MVKRLHITKLPLAD-PSLF--------IQHFAEKLDLGDKKIKVVRDAVKLAQRMSRDW- 216
Query: 207 LTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQAL 266
+ GRRP + A ++ +N + + H T ++R E
Sbjct: 217 MYEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEETIQERLNEFKGTKAGKLSIN 276
Query: 267 PWGKDVTVKNVLKNAPFVMNYMEMKSMEKRKEERDGLNCGGIDLGDVVSECLKKD 321
+ D T + + F N + K ++++ G D+ + E L ++
Sbjct: 277 EFRNDETTEPGAQPPSFTRNRINEKKLKRK--------LGNNDVNETSEEALNRN 323
>gi|150402961|ref|YP_001330255.1| transcription initiation factor IIB [Methanococcus maripaludis C7]
gi|189029856|sp|A6VI28.1|TF2B_METM7 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150033991|gb|ABR66104.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C7]
Length = 339
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKNIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|159905293|ref|YP_001548955.1| transcription initiation factor IIB [Methanococcus maripaludis C6]
gi|226703638|sp|A9A8Q0.1|TF2B_METM6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|159886786|gb|ABX01723.1| Transcription factor TFIIB cyclin-related [Methanococcus
maripaludis C6]
Length = 339
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKNIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|408403989|ref|YP_006861972.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364585|gb|AFU58315.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 285
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 114/290 (39%), Gaps = 62/290 (21%)
Query: 14 EDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYVH---------- 50
++ SG + C +CG V +AF + + R G PT + +H
Sbjct: 4 DNSSGEMFCGNCGFVVSERIEELGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGP 63
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFP 110
V +G L+ K E + D + + + Q + +D++ D + +GD
Sbjct: 64 VDKDASGKPLSASMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKD-KLAVGD--- 119
Query: 111 ILIGACSYVVMRLDDKSL-------------------------PISEVASVLNCDVYELG 145
+I +YV + +K L + ++A+ N ++
Sbjct: 120 AVIEKAAYVYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDIANASNIKKKDVA 179
Query: 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW 205
R ++ L+LK+P VD V R+ + L ++ +++ + +L A +
Sbjct: 180 RCYRLLIRELDLKMPVVDPVKCVARIASKAGLS----------EKTKRKALEILKKAEEG 229
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ G+ PM + A L +NG + ++VA+ T VT R RYK L
Sbjct: 230 KISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKGL 279
>gi|156397159|ref|XP_001637759.1| predicted protein [Nematostella vectensis]
gi|156224874|gb|EDO45696.1| predicted protein [Nematostella vectensis]
Length = 674
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDGEFGLGDWFPILIGACSYVV 120
KE+K+ K++ E KL+L R I +K ++ + E L L+ A Y+V
Sbjct: 71 KERKV---KKIMSEEGCKLNLPP-RIIDETMKFILQTVYRAELDLHRRIRPLVFASIYIV 126
Query: 121 MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQG- 179
R + SL + +A V + DV+ +G ++ + LN++L + + ++++ + G
Sbjct: 127 ARQNRVSLSLRNIAHVADMDVFRIGHVVKFICSSLNIELQQTNAHDYLSVLVKDFEVLGA 186
Query: 180 --FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
NL S+LD + G L L GR P+ L +V V K
Sbjct: 187 REVENLATSLLDFL---GDLC--------LAHGRNPV-----TLAYVSVFLSVESKYARP 230
Query: 238 AKEVHCTV--------VTCRKRYKELLEALVK-VAQALPWGKDVTVKNVLKNAPFVMNYM 288
+K++H + T + +++ L V ++LPW V ++V K P V+ Y
Sbjct: 231 SKKIHDKICLMHAISGTTAKGFLQKIRRELCHIVKESLPWIGPVRPRDVAKFIPDVIQYK 290
Query: 289 EMKSMEKR 296
+ + E R
Sbjct: 291 SLITYEPR 298
>gi|118577054|ref|YP_876797.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
gi|118195575|gb|ABK78493.1| transcription initiation factor TFIIB [Cenarchaeum symbiosum A]
Length = 303
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 62/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG ++ ++ +G + C CG V ++F D Q R G PT + +
Sbjct: 11 CQRCGKGSMLTDNDTGEMFCSKCGFVATERAEQAGPEWRSFSKDDGQDRTRTGTPTSLAM 70
Query: 50 H-VGTA---------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H +G A TG L K E + D + + + Q + +D++
Sbjct: 71 HDMGLATIINPANKDATGRPLTASMKSTIERLRTWDSRSQVHEPVDRNYRQAFSELDRLK 130
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSL-------------------------PISEVA 134
D + L D +I +Y+ + DK L +++VA
Sbjct: 131 D-KLALSD---AVIEKTAYIYRKALDKGLVRGRSILALIAAALYAACRNTETPRTLTDVA 186
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
+ +N ++ R ++ L+LK+P +D + R+ + L ++ +++
Sbjct: 187 NGINIKRKDVARCYRLLLRELDLKMPVIDPIKGMSRIASKAGLS----------EKTKRK 236
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
L A + ++ G+ PM + A L + G + ++VA+ T VT R RYK
Sbjct: 237 AHEYLKEANRIEVSAGKDPMGLAAAALYLACVIIGENKTQKDVAQAAGVTEVTIRNRYKG 296
Query: 255 LLEAL 259
L EAL
Sbjct: 297 LKEAL 301
>gi|355572234|ref|ZP_09043416.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
gi|354824950|gb|EHF09189.1| Transcription initiation factor IIB [Methanolinea tarda NOBI-1]
Length = 338
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C +CG+V +AFD+ R G P +
Sbjct: 42 CPECGSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 101
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 102 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 155
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 156 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 215
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 216 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKG----------EVQ 265
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 266 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 325
Query: 253 KELLEAL 259
KEL E L
Sbjct: 326 KELAEKL 332
>gi|88603722|ref|YP_503900.1| transcription initiation factor IIB [Methanospirillum hungatei
JF-1]
gi|88189184|gb|ABD42181.1| Transcription initiation factor IIB (TFIIB) [Methanospirillum
hungatei JF-1]
Length = 337
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C CG+V +AFD+ R G P +
Sbjct: 41 CPECGSRQLVHDYERAELVCQQCGLVIDAEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 100
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 101 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 154
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R +L+G ++
Sbjct: 215 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLQLKG----------EVQ 264
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 265 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 324
Query: 253 KELLEAL 259
KEL E L
Sbjct: 325 KELAEKL 331
>gi|150399786|ref|YP_001323553.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399791|ref|YP_001323558.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399796|ref|YP_001323563.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150399801|ref|YP_001323568.1| transcription initiation factor IIB [Methanococcus vannielii SB]
gi|150012489|gb|ABR54941.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012494|gb|ABR54946.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012499|gb|ABR54951.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
gi|150012504|gb|ABR54956.1| Transcription factor TFIIB cyclin-related [Methanococcus vannielii
SB]
Length = 339
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKNIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + + R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPIDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|193083921|gb|ACF09599.1| intein-containing transcription factor TFIIB cyclin-related protein
[uncultured marine crenarchaeote KM3-34-D9]
Length = 307
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 104/292 (35%), Gaps = 53/292 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA----QLYGRDGPTGIYVHVGTA---- 54
C +C + ++ +G L C CG V+ + + + DG V GT+
Sbjct: 18 CPACTKAKMVLDETTGELFCSVCGFVETEKITEGGPEWRSFSNDGGDRSRVGAGTSITMH 77
Query: 55 --------------GTGSALNYKEKKIYESNKL---------------------IDELTF 79
TG L KK E + +D+L
Sbjct: 78 DMGLSTIIGVQNKDATGKPLESSMKKSIERLRTWDSRSQAHSSSERNLRQALSEMDKLKD 137
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL LT + + K + + G L+ AC Y R+ + + ++A +N
Sbjct: 138 KLTLTDTVIEKAAYIYRKAIERKLVKGRSIHGLVAACIYASCRMTETPRTLDDIAEGINI 197
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
++ R + L+LK+P D V SR+ L E+ +++ ++LL
Sbjct: 198 KRKDVARSYRIIFRELDLKIPVADPVKGV------SRIASLAGLGEA----TKRKALILL 247
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
N A K + G+ PM + A L G S + ++ T VT R R
Sbjct: 248 NKAKKIGMVAGKDPMGIAAAALYLACISTGGSKTQKEISIASGVTEVTIRNR 299
>gi|148508281|gb|ABQ76065.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 380
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 61/307 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG T+ D S IC +CG+V + F+ + R G PT +
Sbjct: 85 CPECGGDTVASAD-SPETICSACGLVITEDEIDRGPEWRGFNAKERNQKSRVGAPTTALM 143
Query: 50 HVGTAGTGSALNYKEKKIY-------ESNKL--------------------------IDE 76
H G + + ++ K Y + KL ID
Sbjct: 144 H--DKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 201
Query: 77 LTFKLDLTGQRSIQIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVAS 135
++ LD+ + + + +MI + D + G + A Y R+D + I E+AS
Sbjct: 202 MSSALDI-HETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELAS 260
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+ R ++ L+L++P + + R F + E D ++
Sbjct: 261 VSRVPALEIKRTYRYIIRELDLQIPPTNPIEYIGR---------FASAIECN-DETERRA 310
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L A + + +G+ P+ + + L +L + ++ + VT R RY+E+
Sbjct: 311 RALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEISNAADVSEVTIRNRYREI 370
Query: 256 LEALVKV 262
LEA +V
Sbjct: 371 LEAAEEV 377
>gi|110669282|ref|YP_659093.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109627029|emb|CAJ53505.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 375
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 115/307 (37%), Gaps = 61/307 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG T+ D S IC +CG+V + F+ + R G PT +
Sbjct: 80 CPECGGDTVASAD-SPETICSACGLVITEDEIDRGPEWRGFNAKERNQKSRVGAPTTALM 138
Query: 50 HVGTAGTGSALNYKEKKIY-------ESNKL--------------------------IDE 76
H G + + ++ K Y + KL ID
Sbjct: 139 H--DKGLSTNIGWQNKDAYGQSVSAEKRRKLKRLRTWNERIRTQDSKDRNLKHALGEIDR 196
Query: 77 LTFKLDLTGQRSIQIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVAS 135
++ LD+ + + + +MI + D + G + A Y R+D + I E+AS
Sbjct: 197 MSSALDI-HETTRETASMIYRRALDADLLPGRSIEGVATAVLYAASRIDGVARSIDELAS 255
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+ R ++ L+L++P + + R F + E D ++
Sbjct: 256 VSRVPALEIKRTYRYIIRELDLQIPPTNPIEYIGR---------FASAIECN-DETERRA 305
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L A + + +G+ P+ + + L +L + ++ + VT R RY+E+
Sbjct: 306 RALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEISNAADVSEVTIRNRYREI 365
Query: 256 LEALVKV 262
LEA +V
Sbjct: 366 LEAAEEV 372
>gi|345498426|ref|XP_001607399.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Nasonia
vitripennis]
Length = 668
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 32/275 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--------A 54
C +CGS + + G +C CG V + ++ + P+G + +G+
Sbjct: 6 CKNCGSTNIETDPARGDAVCTECGFVLEDNIIVSETTFEETPSGNMMMIGSFVSNESSGG 65
Query: 55 GTGSALNY-------KEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFGLG 106
TG Y +E + + K I L +L L Q I N + G
Sbjct: 66 ATGFGAGYLVSGKESREITLQNAKKGITHLCRQLQLN-QHCIDTSVNFYKMALNRHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD--- 163
AC Y+ R + + + +++ VL V+ELGR R + L + +P +D
Sbjct: 125 RKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCINIPSMDPCL 184
Query: 164 -IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 185 YIMRFANKLEFGDKTHEVSMTALRVVQRMKRDSI-----------HSGRRPSGLCGAALL 233
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
L+ + ++ K V T RKR E E
Sbjct: 234 MAARLHEFNRSPSDIIKIVKVHESTLRKRLIEFGE 268
>gi|41054045|ref|NP_956183.1| transcription factor IIIB 90 kDa subunit [Danio rerio]
gi|38014698|gb|AAH60523.1| Zgc:63497 [Danio rerio]
Length = 693
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 95/271 (35%), Gaps = 23/271 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDGPTG 46
C +CG + + GS +C +CG V Q +N Q DG +
Sbjct: 5 CKNCGGSDIDTDPARGSAVCTACGSVLEDNIIVSEVQFVENSGGVSSAVGQFVSADGTSK 64
Query: 47 IYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
V T + + + + I L +L L N + G
Sbjct: 65 APVLGSGFHTSLGKESRAQTLQNGKRQIHNLGSQLQLNQHCLDTAFNFFKMVVSKHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ +L +VY LG+ + L + P VD
Sbjct: 125 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINAPAVDPCL 184
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R L+ E + +R LL + ++ TGRRP + A L+
Sbjct: 185 YIPRFAH--MLEFGEKTHEVSMTALR-----LLQRMKRDWMHTGRRPSGLCGAALLVAAR 237
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ ++ V V T RKR E E
Sbjct: 238 MHEFRRTVKEVISVVKVCETTLRKRLTEFEE 268
>gi|448409173|ref|ZP_21574555.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
gi|445673121|gb|ELZ25683.1| transcription initiation factor IIB [Halosimplex carlsbadense
2-9-1]
Length = 313
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 114/303 (37%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S L G ++C CG++ +AF++ + Q R G PT +
Sbjct: 20 CPECESSALVTSADGGEIVCEDCGLIIDEGNIDRGPEWRAFNHSERQEKSRVGAPTTQTM 79
Query: 50 HVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMIDK 97
H G + +++K+K Y E + L + G+R++Q + ID+
Sbjct: 80 H--DKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 137
Query: 98 IT---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ D + G + AC Y R +D + EV+ V
Sbjct: 138 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRQEDIPRSLEEVSEV 197
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+GR V + L+LK+ VD R + S L+ + + ++ +
Sbjct: 198 SRVEQKEIGRTYRYVAQELSLKMEPVDPKQYVPRFV--SELE--------LSEEVQAKAN 247
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+++ + L +G+ P A + L VA T VT R RY+E +
Sbjct: 248 EIIDVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQI 307
Query: 257 EAL 259
EA+
Sbjct: 308 EAM 310
>gi|213407030|ref|XP_002174286.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
gi|212002333|gb|EEB07993.1| transcription initiation factor IIB [Schizosaccharomyces japonicus
yFS275]
Length = 508
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 104/271 (38%), Gaps = 25/271 (9%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----------- 49
M C++CGS +L + SG+ CV CG V + +++ + TG +
Sbjct: 1 MQCSTCGSSSLESDQSSGNTYCVKCGTVCEQNVIVSEVTFGEASTGAAIVQGSLISQDQT 60
Query: 50 HVGTAG---TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H T G + L +E I K I L L LT + + F G
Sbjct: 61 HARTFGPYRKHNQLESREMTISNGRKRIAALARTLRLTDRHVEAAVRYFTLAINHNFIKG 120
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ +C YV R+ S + + + VL +V++LG ++ L + LP +D
Sbjct: 121 RRSQYVVASCLYVECRMAKTSHMLIDFSDVLQINVFKLGSTFLKLCRVLRITLPLLDPSI 180
Query: 167 MFERVIRNSRLQGFTNLDE--SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R F + E S R+ L++ + ++ GRRP + A L+
Sbjct: 181 YIGR---------FAAMLEFGSETQRVASDATRLVSRMNRDWMQIGRRPAGICGACLLIA 231
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V V T +KR +E
Sbjct: 232 ARMNNFRRSVREVVHVVKVADATIQKRLEEF 262
>gi|308810665|ref|XP_003082641.1| transcription factor IIB (ISS) [Ostreococcus tauri]
gi|116061110|emb|CAL56498.1| transcription factor IIB (ISS) [Ostreococcus tauri]
Length = 728
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 99/284 (34%), Gaps = 42/284 (14%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCG-------VVQAFDNYDAQLYGRDGPTGIYV----- 49
C C + + S G C CG V + G P G++V
Sbjct: 2 CDGCAKRVAAETNESNGFTCCTQCGKILHERVVFSGETTFTKNAQGASVPDGMFVPENGI 61
Query: 50 -------HVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI--QIKNMIDKITD 100
G G L+ E+ +Y I ++ +L + + + +
Sbjct: 62 AHGVIRASRGGRLYGVQLDSHERTLYRGKLEIKQVADRLAIRPREDVVDAAHRLYKLAVQ 121
Query: 101 GEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL- 159
F G + GAC Y++ R + + + + A VL +VY LG + ++ L L+
Sbjct: 122 RNFTRGRRVSQVAGACLYIICRQESRPYMLIDFADVLQTNVYVLGAVFLQLCRLLRLEQH 181
Query: 160 --------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGR 211
P + I +++ R+ N ++ M++ W + TGR
Sbjct: 182 PLMQKPIDPSLFIHRFADKLSLGRRMHTVANTALRLVASMKRD----------W-MQTGR 230
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP + A L ++G + +V VH T +KR E
Sbjct: 231 RPNGICGAALWVAAHIHGFNPSKRDVVAVVHVGEATLKKRLSEF 274
>gi|326430273|gb|EGD75843.1| hypothetical protein PTSG_07961 [Salpingoeca sp. ATCC 50818]
Length = 543
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 100/260 (38%), Gaps = 14/260 (5%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGT-GSALN 61
C SCGS + E+ G+ C CG V +++ + + + +VG+ G G
Sbjct: 4 CPSCGSDAV--EEDRGTATCTVCGTVLEDSIIVSEVTYTEDSSVVEQYVGSDGQIGGLRG 61
Query: 62 YKEKKIYES----NKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACS 117
+ I + + I+ + + L +F G + C
Sbjct: 62 FPRSSIVTAVNTGRQHIENMARNMKLNQGHIDAAVKYYRMAAQQKFTAGRPSEHVAACCL 121
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y+V R + L + + A L +VY+L + L++ LP +D V R +
Sbjct: 122 YIVCREERSMLMLLDFADFLRVNVYKLASTFLSLRLKLSITLPVIDPVLFLPRFVMQ--- 178
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
+L + D + + + +++ + +L GRRP + A L+ + G + ++V
Sbjct: 179 ---LDLGDKQHD-IGRTAIRIVSRMKRDWLHVGRRPAGICGAALLLAARMYGFARSQKDV 234
Query: 238 AKEVHCTVVTCRKRYKELLE 257
V T RKR E E
Sbjct: 235 VHAVRVCSSTVRKRLDEFAE 254
>gi|448602605|ref|ZP_21656540.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625071|ref|ZP_21670838.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445746957|gb|ELZ98414.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445748833|gb|EMA00279.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 318
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 125/300 (41%), Gaps = 46/300 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 22 CPECGSESLVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSSEKDQKSRVGAPTTNMM 81
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 82 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 138
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMIT---RVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 139 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQ-----------GFTNLDESMLDRMRKQGVLLLNCA 202
++ E D I + V+R +L+ F + D + D ++ LL A
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFAS-DLGLSDESERRARQLLKNA 255
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA +V
Sbjct: 256 KEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQV 315
>gi|448420035|ref|ZP_21580845.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
gi|445674203|gb|ELZ26748.1| transcription initiation factor TFB [Halosarcina pallida JCM 14848]
Length = 330
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 46/296 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS L + G +C CG+V +AFD+ + R G PT
Sbjct: 35 CPECGSTNLVNDSEHGETVCEECGLVVEEDAVDRGPEWRAFDSSERDSKSRVGAPTTNMM 94
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ +++ + + +E F+ + +R++ K + +I
Sbjct: 95 HDKGLSTNIGWQDKDAYGNSLSSNQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 151
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 152 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 209
Query: 155 LNL-KLPEVDIVSMFERVIRNSRLQ-----------GFTNLDESMLDRMRKQGVLLLNCA 202
N+ ++ + +I + V+R +L+ F + D + D + LL A
Sbjct: 210 TNVSRVGKDEISRTYRYVVRELKLEIEPADPEQYVPRFAS-DLDLSDESERHARQLLKTA 268
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA
Sbjct: 269 KEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSQVSEVANISEVTIRNRYHELLEA 324
>gi|440290064|gb|ELP83518.1| transcription factor IIIB 70 kDa subunit, putative [Entamoeba
invadens IP1]
Length = 545
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 99/267 (37%), Gaps = 38/267 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAG-----TG 57
C C SK L +E +GS IC CG+V D+ A + + +G G
Sbjct: 23 CPECHSKNLRKE--NGSTICEDCGLV--LDDCGALI--------AELQFDESGGRKRLAG 70
Query: 58 SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKN--------MIDKITDGEFGLGDWF 109
+ E++ Y+ + + + ++ +S I++ M IT G
Sbjct: 71 TQFGETERRRYDVERQMRAIRRVGEMLKMKSSDIESGERLYRVAMQRGITKGR-----RV 125
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFE 169
GAC Y++ R + + + A VL+ V +LGR + L L LP VD +
Sbjct: 126 AYSAGACLYIICRRERTDHLLIDFADVLHVSVRKLGRTFIHFCKELKLDLPFVDPCLYLQ 185
Query: 170 RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
R + E D +R + W + GRRP + L L+
Sbjct: 186 RFGEDLAF-------EKTADVVRTAMRICQRMNRDW-MHYGRRPSGICGVALYLAGRLHN 237
Query: 230 VSVKIENVAKEVHCTVVTCRKRYKELL 256
+E + V + T R R KE L
Sbjct: 238 EPRTLEEIVHVVRLSTTTVRVRLKEFL 264
>gi|448411807|ref|ZP_21576163.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669741|gb|ELZ22349.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 329
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 108/306 (35%), Gaps = 57/306 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG+ +T E G +C CGVV ++FD D R G PT +
Sbjct: 36 CPECGAAGITDEK-RGETVCQECGVVLEEDVVDRGPEWRSFDARDKAQKSRVGSPTTEML 94
Query: 50 H----------VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
H G L+ K+++ + DE F+ R++ Q ID++
Sbjct: 95 HDKGLSSVIDWQNKDANGQTLSAKKREQMSRLRTWDE-RFRSQSAQDRNLKQALGEIDRM 153
Query: 99 T---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
D E G + Y R + E+ +V
Sbjct: 154 ASALGIPKDARETASVIYRRALDEELIPGRSIEAMATGSLYAGARQAGVPRTLDELETVS 213
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
D E R + L L + D R++ ++LD + + +++ V
Sbjct: 214 RVDRKEFARAYRYIARELELAMEPTDPAQYVPRLV--------SDLD--LPEETKQRAVE 263
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
LL + + +G+ P+ + A + L V V VA + VT R RY ELL+
Sbjct: 264 LLEAGKREAVHSGKNPVGLAAAAIYAAGRLTNVDVTQHEVADAADVSAVTIRDRYTELLD 323
Query: 258 ALVKVA 263
A +VA
Sbjct: 324 AADRVA 329
>gi|348554704|ref|XP_003463165.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Cavia porcellus]
Length = 650
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 20/254 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C +CGS + + G +C +CG V + +++ + G G++ G ++
Sbjct: 6 CRACGSTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVENSGG-----GSSAVGQFVSL 60
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT-DGEFGLGDWFPILIGACSYVVM 121
+ + I L +L L Q + + K+ + G +I AC Y+V
Sbjct: 61 ------DGRRHIHHLGSQLQLN-QHCLDTAFIFFKMAVNKSLTRGRKMTHVIAACLYLVC 113
Query: 122 RLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFT 181
R + + +++ +L +VY LG+ + L + P +D R G
Sbjct: 114 RTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEF-GEK 172
Query: 182 NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEV 241
N + SM + LL C + ++ TGRRP + A L+ ++ ++ V V
Sbjct: 173 NHEVSM------TALRLLQCMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVV 226
Query: 242 HCTVVTCRKRYKEL 255
T RKR E
Sbjct: 227 KVCESTLRKRLTEF 240
>gi|146414780|ref|XP_001483360.1| hypothetical protein PGUG_04089 [Meyerozyma guilliermondii ATCC
6260]
Length = 539
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 53/284 (18%)
Query: 2 PCTSCG--SKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------ 53
PC +CG S ++ R G + C CG VQ + +++ + +G V GT
Sbjct: 6 PCRNCGHTSFSIDRYTSLGDVSCSRCGTVQEENPIVSEVQFGELSSGAAVVQGTMVGADQ 65
Query: 54 -----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G +A+ +E+ + K I + + + D I+D +W
Sbjct: 66 TRATFGGRQNAMESREQTLQNGRKKIKRIATAMRIP-----------DYISDA---AAEW 111
Query: 109 FPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154
F + ++ AC YV R + + + +S L VY LG ++V
Sbjct: 112 FRLALTLNFVQGRRSQNVLAACLYVACRKEKTPHMLIDFSSRLQISVYSLGATFLKMVRA 171
Query: 155 LNL-KLPEVDIVSMFERVIRNSRLQGFT-NLD-ESMLDRMRKQGVLLLNCAVKWFLTTGR 211
L++ LP D S+F +Q F LD +L ++ K V L ++ GR
Sbjct: 172 LHITNLPLAD-PSLF--------IQHFAERLDFGDLLTKVIKDAVKLAQRMANDWIHEGR 222
Query: 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
RP V A ++ +N + H T ++R E
Sbjct: 223 RPAGVAGACVLLAARMNNFRRSHAEIVAVAHVAEETLQRRLNEF 266
>gi|410916049|ref|XP_003971499.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Takifugu
rubripes]
Length = 690
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 98/283 (34%), Gaps = 51/283 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDGP-- 44
C +CG + + GS +C CG V + Q DGP
Sbjct: 6 CRTCGGSDIDVDQARGSAVCTDCGSVLEDNIIVSEVQFVEGSGGVSSAVGQFVSADGPVK 65
Query: 45 -----TGIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
+G + VG L +++I L +L L N +
Sbjct: 66 APLLGSGFHTSVGKESRAQTLQGGKRQI-------QHLGSQLQLNQHCLDTAFNFFKMVV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKTEHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYILGKTFLLLARELCINA 178
Query: 160 PEVD-------IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRR 212
P +D M E ++ + T L ++ RM++ W + TGRR
Sbjct: 179 PAIDPCLYIPRFAHMLEFGVKTHEV-SMTAL--RLVQRMKRD----------W-MHTGRR 224
Query: 213 PMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
P + A L+ ++ +++V V T RKR E
Sbjct: 225 PSGLCGAALLVAARMHKFRRTVKDVISVVKVCQTTLRKRLTEF 267
>gi|340623224|ref|YP_004741677.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
gi|339903492|gb|AEK18934.1| transcription initiation factor IIB [Methanococcus maripaludis X1]
Length = 339
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+A V D E+GR + LN++L + V R +L G
Sbjct: 214 LDEIAEVSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG---------- 263
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A + LT+GR P V A + L G VA T VT R
Sbjct: 264 EVESKAISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIR 323
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 324 NRYKELTEHL 333
>gi|399575166|ref|ZP_10768924.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
gi|399239434|gb|EJN60360.1| hypothetical protein HSB1_09630 [Halogranum salarium B-1]
Length = 329
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 123/309 (39%), Gaps = 65/309 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + G +C CG+V +AFD+ + R G PT
Sbjct: 34 CPECGGQ-LNPDTAHGETVCSDCGLVVDEDEIDHGPEWRAFDSKEKDQKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 93 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 149
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
GLG P + + V+ R LDD LP + E+
Sbjct: 150 RMASGLG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEI 207
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
ASV D E+ R VV L L++ D R ++LD + D +
Sbjct: 208 ASVSRVDKDEIARTYRYVVRELKLEIQPADPEQYVPRFA--------SDLD--LSDESER 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ LL A + + +G+ P+ + A + L V V+ + + VT R RY
Sbjct: 258 RARKLLQNAKEEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSDVANISEVTIRNRYH 317
Query: 254 ELLEALVKV 262
ELLEA +V
Sbjct: 318 ELLEAEEQV 326
>gi|324516790|gb|ADY46635.1| Transcription factor IIIB 90 kDa subunit, partial [Ascaris suum]
Length = 339
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 105/274 (38%), Gaps = 35/274 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN------YDAQLYGRDGPTGIYVHVGTA-- 54
C CGS + + G C++CG V Y + G G +V A
Sbjct: 5 CPHCGSSDIDDDAARGDSTCMNCGTVLEESTIVSDVTYQERSGGGSTLVGQFVSHDRAQR 64
Query: 55 ----GTGSALNYKEKKI--YESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
G ++ + +++ + KLI+ + +L + N F G
Sbjct: 65 HTLSGVPGLMHQESREVTYMKGKKLIEGIASQLRINQHCIDTAYNFFKMCVSRNFTRGRV 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
++ AC Y+ RL++ + + + + V +V+ELGR + + L + LP D
Sbjct: 125 RSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRTLNFLARSLKINLPTTDPCLY- 183
Query: 169 ERVIRNSRLQGF-------TNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
++R + L F +L ++ RM++ W + TGRRP + A L
Sbjct: 184 --ILRFAVLLEFGEKEKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGAAL 230
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + I ++ + VH + RKR E
Sbjct: 231 LLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEF 264
>gi|291333316|gb|ADD93023.1| transcription initiation factor IIB [uncultured archaeon
MedDCM-OCT-S04-C246]
Length = 308
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 112/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
CT C S+ L +++ G LIC CG+V + F R G P + +
Sbjct: 12 CTECASRNLVKDENRGELICQDCGLVLEDNVIDQGAEWRVFSPEQGDQRARTGAPMTVML 71
Query: 50 HVGTAGT----------GSALN-------YKEKKIYESNKL--------------IDELT 78
H T G +++ Y+ +K + +++ +D +
Sbjct: 72 HDKGLSTDIDWQNKDYSGKSISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDRMA 131
Query: 79 FKLDLTGQRSIQIKNMID--KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+LDL +SI+ ++ K + G + A Y R + E+
Sbjct: 132 SRLDLP--KSIREAAAVNYKKAVEARLIRGRSIEGVAAASLYAACRQCSNPRTLDEIGEA 189
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD-RMRKQG 195
E+GR +V L +K+P R + LD LD ++ +
Sbjct: 190 SRTGRKEIGRTYRFMVRELKMKIPPTKPEDYIPRFC--------SGLD---LDAEVQAKA 238
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ A + LT+GR P + +++ L G VA+ T VT R RYKEL
Sbjct: 239 YELIAAAQERELTSGRGPTGIAASIIYIASVLCGKRRTQREVAEVAGVTEVTIRNRYKEL 298
Query: 256 LEAL 259
++ L
Sbjct: 299 IQNL 302
>gi|307110280|gb|EFN58516.1| hypothetical protein CHLNCDRAFT_140579 [Chlorella variabilis]
Length = 313
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 128/315 (40%), Gaps = 28/315 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN--YDAQLYGRDGPTGIYVHVGTAGTGSAL 60
C CG + E++ G C +CG V A + + R P G++V G +A
Sbjct: 5 CPKCGEGAVEFEEVEGVSACAACGWVVADEQLVHATAWDNRGAPQGVFVGAEDTGERAAA 64
Query: 61 NYKEKK-----IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG---------LG 106
+ + I S + + E K + + + + + D LG
Sbjct: 65 HALQASGPGLSIQRSKRGVGEARLKARV--REFAALLRLQPPVVDQALHVAGRAVPHCLG 122
Query: 107 DWF-PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
+W L A +Y RL+ L +++++ + DV+ LG + L+L+ P +
Sbjct: 123 NWRRDHLAAAATYAACRLNKLPLTLADLSGSVQIDVHTLGHYYCALCRLLDLQPPLLLPA 182
Query: 166 SMFERVIRNSRLQGFTN--LDESMLDRMRKQGVLLLNCAVKWF---LTTGRRPMPVVVAV 220
+ R + + L + +++ +LL+ W L + P+ V A
Sbjct: 183 DLLPRSVDRVTAEAVARGALAAGTVAAVQRDAGMLLD----WMHRQLNQRQFPLGCVGAA 238
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKN 280
LV E+N VS+ +++V+ + T ++ + + LV+++ LP+ + V+NV +
Sbjct: 239 LVLAAEMNTVSLSLDHVSASLPLCRSTLERKLAQTRQRLVQLSAFLPYSSTINVRNVGSH 298
Query: 281 APFVMNYMEMKSMEK 295
A ++ ++ K
Sbjct: 299 ARTIIKLSALRHCAK 313
>gi|126178423|ref|YP_001046388.1| transcription initiation factor IIB [Methanoculleus marisnigri JR1]
gi|189029857|sp|A3CSQ6.1|TF2B_METMJ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|125861217|gb|ABN56406.1| Transcription initiation factor IIB (TFIIB) [Methanoculleus
marisnigri JR1]
Length = 337
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C +CG+V +AFD+ R G P +
Sbjct: 41 CPECGSRQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 100
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 101 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 154
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 215 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKG----------EVQ 264
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 265 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 324
Query: 253 KELLEAL 259
KEL E L
Sbjct: 325 KELAEKL 331
>gi|395646538|ref|ZP_10434398.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
gi|395443278|gb|EJG08035.1| Transcription initiation factor IIB [Methanofollis liminatans DSM
4140]
Length = 336
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 116/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C SCG+V +AFD+ R G P +
Sbjct: 40 CPECGSRQLVHDYERAELVCKSCGLVIDEEFIDRGPEWRAFDHDQRVKRSRVGAPMTFTI 99
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 100 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 153
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + V+ R DK+L + E
Sbjct: 154 ELDRMASALGLPRNVRETAAVIYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 214 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 263
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L+G VA+ T VT R RY
Sbjct: 264 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVAEVAGVTEVTIRNRY 323
Query: 253 KELLEAL 259
KEL E L
Sbjct: 324 KELAEKL 330
>gi|91772962|ref|YP_565654.1| transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
gi|91711977|gb|ABE51904.1| Transcription initiation factor IIB [Methanococcoides burtonii DSM
6242]
Length = 337
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS++L ++ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRSLEQDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R L+G ++
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+GV +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 RGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|168035366|ref|XP_001770181.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678558|gb|EDQ65015.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 166
Score = 47.4 bits (111), Expect = 0.020, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL--- 159
F G P + GAC Y+V R ++K + + + L +VY LG + ++ + L L+
Sbjct: 5 FTRGRPTPRVAGACLYIVCRQENKPYMLIDFSDSLQTNVYVLGAVFLQLCQLLRLEQHPI 64
Query: 160 ------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRP 213
P + I +R+ ++ N ++ M++ ++ TGRRP
Sbjct: 65 MQRPVDPSLFIHRFADRLQFGKKMHAVANSALRLVASMKRD-----------WMQTGRRP 113
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
V A L ++G +V VH T +KR E
Sbjct: 114 SGVCGAALFIAAHIHGFERSKADVVSVVHICEATLKKRLVEF 155
>gi|383865567|ref|XP_003708244.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Megachile
rotundata]
Length = 656
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 32/273 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C +CGS + + G +C CG V ++ ++ P+G + V TG
Sbjct: 6 CRNCGSTEIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 59 A--------LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFGLG 106
A +N KE + + + K I L +L L Q I N + G
Sbjct: 66 ATEFGATYHINGKESRGITLQNARKGITHLCMQLHL-NQHCIDTSMNFYKMALNRHLTRG 124
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD--- 163
AC Y+ R + + + +++ VL V+ELGR R + L + +P VD
Sbjct: 125 RKQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLRFTQALCINIPSVDPCL 184
Query: 164 -IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 185 YIMRFANKLEFGEKTHEVSMTALRVVQRMKRDSI-----------HSGRRPSGLCGAALL 233
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + ++ K V T RKR E
Sbjct: 234 MAARLHEFNRSPADIIKIVKVHESTLRKRLIEF 266
>gi|255569418|ref|XP_002525676.1| transcription initiation factor brf1, putative [Ricinus communis]
gi|223534976|gb|EEF36659.1| transcription initiation factor brf1, putative [Ricinus communis]
Length = 625
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 19/263 (7%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT-AGTGSALN 61
C SC D G L C CG V FDNY + +G G + N
Sbjct: 4 CKSCARDVPGYRDSDGILSCGKCGRVLKFDNYSTEATFVKNASGQSQMAGRIVRSIEGGN 63
Query: 62 YKEKKIYESNKLIDELTF---KLDLTGQRSIQIKNMIDK--ITDGEFGLGDWFPILIGAC 116
+++Y +K D++ + LD+ +I + M+ + F G + AC
Sbjct: 64 SSRQRLY--DKAYDDMIYIKNGLDMGENLAIVDQAMMYYRIAVERNFTKGRRTEQVQAAC 121
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI---- 172
Y+ R + K + + ++ L ++Y LG + ++ + LNL + + + I
Sbjct: 122 LYIACRENRKPYLLIDFSNFLRINIYVLGAVFLQLCKVLNLTEHSI-CQKLLDPSIFIHK 180
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+ L G N D + + ++ + ++ TGRRP + A L +G++
Sbjct: 181 YTASLSGGKNKD------ISDSALTIIASMNRDWMQTGRRPSGLWGAALYIAALSHGLTC 234
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+++ K VH T KR E
Sbjct: 235 SRKDILKLVHVCDATLSKRLVEF 257
>gi|432329785|ref|YP_007247928.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
gi|432136494|gb|AGB01421.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanoregula formicicum SMSP]
Length = 336
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + L + L+C SCG+V +AFD+ R G P +
Sbjct: 40 CPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 99
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 100 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 153
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 154 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 213
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 214 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 263
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 264 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 323
Query: 253 KELLEAL 259
KEL E L
Sbjct: 324 KELAEKL 330
>gi|196016326|ref|XP_002118016.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
gi|190579403|gb|EDV19499.1| hypothetical protein TRIADDRAFT_62066 [Trichoplax adhaerens]
Length = 583
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 27/274 (9%)
Query: 1 MP--CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--AGT 56
MP C CG + + G C SCG V +++ ++ G +G A
Sbjct: 1 MPSSCPKCGGTDIDYDQARGDAACTSCGAVLEDSIIVSEISFKENAMGGASVIGQYVAPD 60
Query: 57 GSALNY-----------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT-DGEFG 104
G + Y +E + K + +L +L L Q I + K+ +
Sbjct: 61 GKSHGYVDGFHGFSKESREITLQNGKKRLTQLGQQLKL-NQNCIDMGYRFFKMAVNKRLT 119
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
G ++ AC Y+V R++D L S++ L +VY LG+ R+ L++ +P +D
Sbjct: 120 RGRKTSHVVAACLYIVCRVEDMLLDFSDI---LQVNVYVLGKTYLRITAALSINIPAIDP 176
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R G D M+ + L+ + ++ GRRP + A L+
Sbjct: 177 CLYIHRFANKLEF-GDKTHDVCMM------ALRLVARMKRDWMHHGRRPSGLCGAGLLVS 229
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
L+G + + + + V T RKR E E
Sbjct: 230 ARLHGYNRTKKQIIRVVRVCEATLRKRLGEFEET 263
>gi|359481012|ref|XP_002269372.2| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Vitis
vinifera]
Length = 529
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 26/267 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYD------AQLYGRDGPTGIYVHVGTAGT 56
CT+C T ++G L C +CG V DN+ G+ +G +V +
Sbjct: 4 CTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQSDY 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT---DGEFGLGDWFPILI 113
++ +E+ + ++ I + + ++G SI I+ + T + F G +
Sbjct: 64 SAS---RERTLNDAYAEIGHIANAIGVSGGDSI-IRPALAFYTIALERNFTRGRRKEQVA 119
Query: 114 GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LPEVDIVSMF 168
AC Y+ R + K + + + L +VY LG + ++ + L+L+ VD
Sbjct: 120 AACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFI 179
Query: 169 ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
R + L G TN+ S K + ++ + +L TGR+P + A L
Sbjct: 180 HRFA--AGLPGETNMGVS------KTALRIIASMKRDWLQTGRKPSGLCGAALYISALSY 231
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKEL 255
G+ ++ K VH T KR E
Sbjct: 232 GLKCSKTDIVKIVHICEATLTKRLIEF 258
>gi|354472071|ref|XP_003498264.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like
[Cricetulus griseus]
gi|344238536|gb|EGV94639.1| Transcription factor IIIB 50 kDa subunit [Cricetulus griseus]
Length = 416
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 93/204 (45%), Gaps = 16/204 (7%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSGTYMQLVKLLGLDVPALCLEELVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ RL Q + + + D+M + +LL+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFRLFQASSPIPAKYVEDKDKMLSRTLLLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIENVAKEVHCTVVT------CRKRYKELLEALVKVAQALPWGKDVTV--KNVL 278
S ++ + C + R +ELL L+++A L W + + + + V+
Sbjct: 236 SLRPSARL-TCSLAQFCKLANVDLPYPAASRLQELLAVLLQMASQLAWLRVLKLDKRTVV 294
Query: 279 KNAPFVMNYMEMKSMEKRKEERDG 302
K+ + + ++ + M R RDG
Sbjct: 295 KH---IGDLLQHRHMLVRMAFRDG 315
>gi|448561557|ref|ZP_21634841.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445720739|gb|ELZ72411.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 318
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 44/299 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 22 CPECGSESLVADSEHGETVCEDCGLVVEENEIDHGPEWRAFNSSEKDQKSRVGAPTTNMM 81
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 82 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 138
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 139 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLDEI 196
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ E D I + V+R +L+ E + D ++ LL A
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAK 256
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA +V
Sbjct: 257 EQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQV 315
>gi|380022853|ref|XP_003695250.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Apis
florea]
Length = 631
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C +CGS + + G +C CG V ++ ++ P+G + V TG
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 59 A--------LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A +N KE + + + K I L +L L N + + G
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQHCIDTSMNFYKMALNRQLTRGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---- 163
AC Y+ R + + + +++ VL V+ELGR + + L + +P VD
Sbjct: 126 KQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCINIPSVDPCLY 185
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 186 IMRFANKLEFGEKTHEVSMTALRIVQRMKRDSI-----------HSGRRPSGLCGAALLM 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + ++ K V T RKR E
Sbjct: 235 AARLHEFNRSPADIIKIVKVHESTLRKRLIEF 266
>gi|383319295|ref|YP_005380136.1| transcription initiation factor TFIIB [Methanocella conradii HZ254]
gi|379320665|gb|AFC99617.1| Transcription initiation factor TFIIB [Methanocella conradii HZ254]
Length = 337
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 113/307 (36%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C CG+V +AFD+ R G P +
Sbjct: 41 CPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRSRVGAPMTFTI 100
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 101 H--DKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 154
Query: 107 DW--------FPILIGACSYVVMR-------LDDKSL-------------------PISE 132
+ P I S VV R + +S+ + E
Sbjct: 155 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 214
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 215 IAEVSRVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLNLKG----------EVQ 264
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA T VT R RY
Sbjct: 265 SRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRY 324
Query: 253 KELLEAL 259
KEL E L
Sbjct: 325 KELAEEL 331
>gi|363753818|ref|XP_003647125.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890761|gb|AET40308.1| hypothetical protein Ecym_5570 [Eremothecium cymbalariae
DBVPG#7215]
Length = 577
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 113/290 (38%), Gaps = 60/290 (20%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +CG R+ + + L+C SCGVV + DN + G G ++
Sbjct: 1 MPKCKNCGHTEFERDLSNANNDLVCKSCGVV-SEDNPIVSEVTFGETSSGAAVVQGSFIG 59
Query: 51 VGTA-------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF 103
G A G SAL +E + + + + ++ L + + +TD F
Sbjct: 60 AGQAHAAFGVRGGTSALESREATLNNARRKLRAVSHALQIP-----------EYVTDAAF 108
Query: 104 GLGDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149
W+ + +I +C YV R + + + +S L VY +G
Sbjct: 109 ---QWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFL 165
Query: 150 RVVEFLNLK-LPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKW 205
++V+ L++ LP D S+F +Q F +L + + ++ K V L K
Sbjct: 166 KLVKALHITDLPLAD-PSLF--------IQHFAEKLDLGDKKI-KVVKDAVKLAQRMSKD 215
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ GRRP + A L+ +N + + H T ++R E
Sbjct: 216 WMYEGRRPAGIAGACLLLACRMNNLRRTHSEIVAVSHVAEETLQQRLNEF 265
>gi|296085890|emb|CBI31214.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 108/267 (40%), Gaps = 26/267 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYD------AQLYGRDGPTGIYVHVGTAGT 56
CT+C T ++G L C +CG V DN+ G+ +G +V +
Sbjct: 4 CTNCARDCRTERLLNGYLCCTACGKVVDQDNFSNDPVFVKNAAGQSQMSGNFVKTVQSDY 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT---DGEFGLGDWFPILI 113
++ +E+ + ++ I + + ++G SI I+ + T + F G +
Sbjct: 64 SAS---RERTLNDAYAEIGHIANAIGVSGGDSI-IRPALAFYTIALERNFTRGRRKEQVA 119
Query: 114 GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LPEVDIVSMF 168
AC Y+ R + K + + + L +VY LG + ++ + L+L+ VD
Sbjct: 120 AACLYIACRENKKPFLLIDFSEHLRINVYVLGAVFLQLCKLLSLEEHPIVQKPVDPSLFI 179
Query: 169 ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
R + L G TN+ + K + ++ + +L TGR+P + A L
Sbjct: 180 HRFA--AGLPGETNMG------VSKTALRIIASMKRDWLQTGRKPSGLCGAALYISALSY 231
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKEL 255
G+ ++ K VH T KR E
Sbjct: 232 GLKCSKTDIVKIVHICEATLTKRLIEF 258
>gi|433593418|ref|YP_007296159.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|448333396|ref|ZP_21522596.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
gi|433307928|gb|AGB33739.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|445622834|gb|ELY76276.1| transcription factor TFIIB cyclin-related protein [Natrinema
pellirubrum DSM 15624]
Length = 320
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS +L + G L+C CG++ +AF++ + + R G PT +
Sbjct: 27 CDECGSSSLVTSEDQGELVCEDCGLIIETTNIDRGPEWRAFNHAERKSKSRVGAPTTQTM 86
Query: 50 HVGTAGTGSALNYKEKKIYESNKLIDELT-----------FKLDLTGQRSIQIK-NMIDK 97
H G + +++K++ + + D+ + + G+R++Q + ID+
Sbjct: 87 H--DKGLTTQIDWKDQDAHGRSLSADKRSRMNRLRKWQERIRAKDAGERNLQFALSEIDR 144
Query: 98 IT---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ D + G + AC Y R + + E+A V
Sbjct: 145 MASALGIPRSVREVASVIYRRALDEDLIRGRSIEGVATACLYAACRREGIPRSLEEIADV 204
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+GR + + L+L + VD R + LD S + ++ +
Sbjct: 205 SRVERKEIGRTYRYIAQELSLAMEPVDPKEYVPRFC--------SELDSS--ETVQAKAT 254
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+++ + L +G+ P A + L + VA T VT R RY+E +
Sbjct: 255 EIIDTTAEQGLLSGKSPTGFAAAAIYAASLLCNEKRTQKEVAAVAQVTEVTIRNRYQEQI 314
Query: 257 EAL 259
EA+
Sbjct: 315 EAM 317
>gi|170043428|ref|XP_001849389.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
gi|167866785|gb|EDS30168.1| transcription factor IIIB 90 kDa subunit [Culex quinquefasciatus]
Length = 218
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 17/177 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGTAG 55
C +CGS + ++ G +C +CG V DN ++ +G G +V + G
Sbjct: 7 CNNCGSAEIEVDNARGDAVCTNCGSVLE-DNIIVSEVQFEENAHGASSAVGQFVASDSKG 65
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G+ +E + ++ I L +L L N G
Sbjct: 66 GATAYGKFHVGTGTESREVTLRKARHGITHLCHQLHLNNHCIETSCNFFKMALIRHLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD 163
+ AC Y+ R + S + +++ VL YELGR ++ + L + +P +D
Sbjct: 126 RRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQALCINIPSID 182
>gi|448316712|ref|ZP_21506293.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
gi|445607127|gb|ELY61021.1| transcription initiation factor IIB [Natronococcus jeotgali DSM
18795]
Length = 318
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS LT + G L+C CG+V +AF++ + R G PT +
Sbjct: 25 CDECGSSALTTSEDQGELVCEECGLVIETRNIDRGPEWRAFNHSERNSKSRVGAPTTKTM 84
Query: 50 HVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMIDK 97
H G + +++K+K Y E + L + G+R++Q + ID+
Sbjct: 85 H--DKGLTTQIDWKDKDAYGRSLSSEKRNQMHRLRKWQERIRTKDAGERNLQFALSEIDR 142
Query: 98 ITDG---------------------EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ + G + +C YV R + + EVA V
Sbjct: 143 MASALGVPRSVREVASVVYRRALNEDLIRGRSIEGVSTSCLYVACRQESIPRSLEEVADV 202
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+GR + + L+L++ VD R + LD S + ++ +
Sbjct: 203 SRVEKKEIGRTYRYIAQELSLEMKPVDPKEYVPRFC--------SALDSS--EEVQAKAR 252
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+++ + L +G+ P A + L VA T VT R RY+E +
Sbjct: 253 EIIDTTAEEGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQI 312
Query: 257 EAL 259
E +
Sbjct: 313 ETM 315
>gi|284161172|ref|YP_003399795.1| transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
gi|284011169|gb|ADB57122.1| Transcription factor TFIIB cyclin-related protein [Archaeoglobus
profundus DSM 5631]
Length = 329
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 106/306 (34%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS + R+ G LIC CG V +AFD+ + R G Y
Sbjct: 33 CPECGSPRIVRDYKRGELICQDCGYVIEERYIDAGPEWRAFDSEQREKRSRVGAPITYT- 91
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELT----FKLDLTGQRSIQIKNM-----------I 95
+ G + +++ K Y K I T F+L QR I+I N +
Sbjct: 92 IHDKGLTTIIDWNNKDYY--GKAISVRTRAQLFRLR-KWQRRIRISNATERNLAFALSEL 148
Query: 96 DKITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEV 133
D++ GL G ++ A Y R + E+
Sbjct: 149 DRMASA-LGLPKSVRETAAVIYRKAIEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEI 207
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A D E+GR + L LKL R L G +++
Sbjct: 208 AQYSRVDRKEIGRTYRFIARELGLKLMPTSPADYVPRFCAALGLSG----------EVQR 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ + ++ A + LT+GR P V A + L G VA+ T VT R RYK
Sbjct: 258 KAIEIIKKAEERELTSGRGPTGVAAAAIYIASILCGERRTQREVAEVAGVTEVTIRNRYK 317
Query: 254 ELLEAL 259
EL E L
Sbjct: 318 ELAEKL 323
>gi|440798133|gb|ELR19201.1| Molybdenum cofactor sulfurase, putative [Acanthamoeba castellanii
str. Neff]
Length = 579
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 15/164 (9%)
Query: 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122
+E + + + I + L LT + + F G +I +C YVV R
Sbjct: 9 REITLENAKRRISSMAGSLGLTAHHTESAFRLFLLALQHNFVRGRKSEYVISSCLYVVCR 68
Query: 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIR----NSRLQ 178
+ + + + A VLN +Y LG LNL+LP +D ER +
Sbjct: 69 REKTAHMLIDFADVLNVPLYYLGHTFLDFCSLLNLQLPVIDPSLYIERFAAKLGFGDKTH 128
Query: 179 GFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
N ++ RMR+ ++ TGRRP + A L+
Sbjct: 129 AVANTALRLVQRMRRD-----------WIITGRRPAGICGADLL 161
>gi|336121697|ref|YP_004576472.1| transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
gi|334856218|gb|AEH06694.1| Transcription initiation factor IIB [Methanothermococcus
okinawensis IH1]
Length = 336
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 40 CPICGSKNVIKDYERAEIVCADCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 98
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 99 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 156
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 157 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 216
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
+ D E+GR + L ++L + + R +L G + +
Sbjct: 217 ISRVDRKEIGRTYRFISRELKIRLAPTNPIDYVPRFASELKLPG----------EVESKA 266
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L+G VA T VT R RYKEL
Sbjct: 267 IAILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 326
Query: 256 LEAL 259
E L
Sbjct: 327 TEHL 330
>gi|294495329|ref|YP_003541822.1| transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
gi|292666328|gb|ADE36177.1| Transcription initiation factor IIB (TFIIB) [Methanohalophilus
mahii DSM 5219]
Length = 337
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 115/308 (37%), Gaps = 64/308 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIY 48
+ C CGS+ L ++ L+C CG+V +AFD+ R G Y
Sbjct: 39 LECPECGSRNLEQDYERAELVCADCGLVVDADFVDEGPEWRAFDHDQRMKRSRVGAPMTY 98
Query: 49 VHVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 99 T-IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRL-RKWQRRIRVSNATER--NLAFAL 153
Query: 106 GDW--------FPILIGACSYVVMRLD-DKSL-------------------------PIS 131
+ P + + VV R DK+L +
Sbjct: 154 SELDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLD 213
Query: 132 EVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRM 191
E+ V E+GR + L+LKL + R L+G +
Sbjct: 214 EIGEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLTLKG----------EV 263
Query: 192 RKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
+ +GV +L A + LT+GR P V A + L G VA T VT R R
Sbjct: 264 QSRGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNR 323
Query: 252 YKELLEAL 259
YKEL E L
Sbjct: 324 YKELAEEL 331
>gi|154151850|ref|YP_001405468.1| transcription initiation factor IIB [Methanoregula boonei 6A8]
gi|189029854|sp|A7IAR4.1|TF2B_METB6 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|154000402|gb|ABS56825.1| Transcription factor TFIIB, cyclin-related [Methanoregula boonei
6A8]
Length = 334
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + L + L+C SCG+V +AFD+ R G P +
Sbjct: 38 CPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 97
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 98 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 151
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 212 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 261
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 262 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 253 KELLEAL 259
KEL E L
Sbjct: 322 KELAEKL 328
>gi|154276374|ref|XP_001539032.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414105|gb|EDN09470.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 818
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G V GT AG
Sbjct: 55 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQSY 112
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 113 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 171
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 172 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 231
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 232 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 284
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N I V V T +T +R KE
Sbjct: 285 ALILAARMNNFRRTIREVVYVVKVTELTIHQRLKEF 320
>gi|66813424|ref|XP_640891.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
gi|60468904|gb|EAL66904.1| TATA box-binding protein-associated factor, RNA polymerase III,
subunit 2 [Dictyostelium discoideum AX4]
Length = 706
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 24/238 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN--YDAQLYGRDGPTGIYVHVGTAGTGSAL 60
C +CG+ + + GS++C +CG V+ N + Q G G +V + T
Sbjct: 5 CGNCGNDSFASSN-EGSVVCTACGTVKESANIVSEVQFGGDSSIVGTFV----SATRKPS 59
Query: 61 NYKEKKIYESNKL-IDELTFKLDLTGQRSIQIKN-MIDKIT-------DGEFGLGDWFPI 111
+Y+ +S + ++ KLD G S++I++ +ID + F G +
Sbjct: 60 SYRSLGGRDSRAMSVENARKKLDQIGN-SLRIRSHLIDSAQRTFELAMENNFTKGRQTRL 118
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+ AC Y+V R + + + + L +V+ + ++++ LN++LP VD +R
Sbjct: 119 VAAACLYIVCRRERTPHLLIDFSENLQVNVFIVAGTFLQLIKLLNIQLPIVDPSFFIQRF 178
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNG 229
S L+ + D + L+ W ++ GR+P + A L +++G
Sbjct: 179 A--SALE----FGDQTKDVIATANKLVARMKRDW-MSIGRKPSGICGASLYIASKIHG 229
>gi|324502344|gb|ADY41032.1| Transcription factor IIIB 90 kDa subunit [Ascaris suum]
Length = 1028
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 39/276 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYV----------- 49
C CGS + + G CV CG+V ++ D R G V
Sbjct: 5 CPHCGSSEIDDDATRGDSTCVKCGMVLEESAIVLDVTYQERSGAGSTLVGQFISHDHEQR 64
Query: 50 HVGTAGTGSALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H + G L ++E + + KLI E+ +L + N F G
Sbjct: 65 HTFSGVPG--LPHQEPREVTYMKGKKLIVEIASQLRINQHCIDTAHNFFRMCVCRNFTRG 122
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
++ AC Y+ RL++ + + + + V +V+ELGR + + L + LP D
Sbjct: 123 RMRSHVVAACLYMTCRLENTAHLLLDFSDVTQVNVFELGRTLNFLARSLKINLPTTDPCL 182
Query: 167 MFERVIRNSRLQGF-------TNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
++R + L F +L ++ RM++ W + TGRRP + A
Sbjct: 183 Y---ILRFAVLLEFGEKEKEVVSLATRLVQRMKRD----------W-IATGRRPTGLCGA 228
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + I ++ + VH + RKR E
Sbjct: 229 ALLLAARCYNFNRTIGDIVRVVHISEAVVRKRLDEF 264
>gi|331244858|ref|XP_003335068.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309314058|gb|EFP90649.1| hypothetical protein PGTG_16675 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 635
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 105/270 (38%), Gaps = 24/270 (8%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSAL- 60
C CG + D S G+ +C +CG V + A++ + G V G++ + L
Sbjct: 6 CPVCGDAAVIEYDSSAGNAVCTTCGYVVDENTIVAEVTFGESSNGAAVLQGSSLGATDLR 65
Query: 61 --------------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ + + + + + + L L + F +G
Sbjct: 66 ARIGGPRGRPQQSAESRAETLAQGMRKLTAMAHALRLGDSIAESAHRFFTLAVSNGFVMG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIV 165
P ++ +C YV RL + +++ +L +V+ +G ++V+ L L+ +P VD
Sbjct: 126 RRSPYVLASCIYVACRLAKLPTMLIDISDLLQVNVFIVGATYLKLVKELCLQNIPLVDPS 185
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R S L+ + + D R L+ W +T GRRP + A L+
Sbjct: 186 LYISRFA--SLLEFGEDTQKVAYDAAR----LVKRFDTDW-MTAGRRPAGIAGASLLIAA 238
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+NG + + + V VT +KR +E
Sbjct: 239 RMNGFRRSVLEIVQVVKMADVTIKKRLEEF 268
>gi|268324098|emb|CBH37686.1| transcription initiation factor IIB [uncultured archaeon]
gi|268326415|emb|CBH40003.1| transcription initiation factor IIB [uncultured archaeon]
Length = 319
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 107/294 (36%), Gaps = 51/294 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGSK L R+ L C CG+V +AFD+ A R G P +
Sbjct: 34 CPECGSKNLVRDYGKAELFCADCGLVIAENIVDLGPEWRAFDSEQASKRARVGAPMTYRI 93
Query: 50 H---VGTAGTGSAL---NYKEKK------------------IYESNKLIDELTFKLDLTG 85
H + T T S+ YK KK + E +++ L +++
Sbjct: 94 HDKGLSTLVTWSSPGQGQYKLKKRQQWTHIANTTERSFIFALSEIDRMASALRLPINIRE 153
Query: 86 QRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELG 145
S+ + + K G + A YV R + EV V E+
Sbjct: 154 AASMLYRKAMKK----HLIRGRSIEGITSAILYVSCRQYGVPRTLEEVRDVSRVGQKEIS 209
Query: 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW 205
R ++ L+LK+ V R L G +R + V ++ A +
Sbjct: 210 RAYRFLLRELDLKVTPASPVDFVPRFCSQLDLSG----------EIRSKAVEIIKKASEA 259
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT GR P+ +V A + L+G + V+ T VT R RYKEL E L
Sbjct: 260 ELTNGRGPIGIVAAAIYIAAILSGEHRTQKEVSDVTGVTEVTIRNRYKELSEQL 313
>gi|161528848|ref|YP_001582674.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160340149|gb|ABX13236.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G L+ AC Y R + + EVA+ + E+ + + L+LK+P +D V
Sbjct: 163 GRSIASLVAACLYAACRESEAPRTLREVAASIGIKRKEISATYRLIFKELDLKMPVIDSV 222
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV- 224
S ++ N+ L ++ ++ + +L A K ++ G+ PM + + L
Sbjct: 223 SCIAKIASNAELS----------EKTKRYAIKILKKAEKQNMSAGKHPMGLAASALYLAS 272
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++L + E +A T VT R R K L
Sbjct: 273 IDLEEFRTQKE-IADAAGITEVTVRNRCKGL 302
>gi|410670096|ref|YP_006922467.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
gi|409169224|gb|AFV23099.1| transcription initiation factor IIB [Methanolobus psychrophilus
R15]
Length = 337
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 115/306 (37%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS++L ++ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRSLVQDYERAELVCSDCGLVVDAEFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRL-RKWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R L+G ++
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+GV +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 RGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|282165287|ref|YP_003357672.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
gi|282157601|dbj|BAI62689.1| transcription initiation factor IIB [Methanocella paludicola SANAE]
Length = 336
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 113/307 (36%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C CG+V +AFD+ R G P +
Sbjct: 40 CPECGSRQLVHDYERAELVCNECGLVVDEDFIDMGPEWRAFDHDQRMKRSRVGAPMTFTI 99
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 100 H--DKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 153
Query: 107 DW--------FPILIGACSYVVMR-------LDDKSL-------------------PISE 132
+ P I S VV R + +S+ + E
Sbjct: 154 ELDRMASALGLPRNIRETSAVVYRKAVTKNLIRGRSIEGVAAAALYAACRQNGVPRTLDE 213
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 214 IAEVSRVSRKEIGRTYRFISRELGLKLMPTSPIDYVPRFCSGLSLKG----------EVQ 263
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA T VT R RY
Sbjct: 264 SRAVEILRQAAEKELTSGRGPTGVAAAAIYISSILCGERRTQREVANVAGVTEVTIRNRY 323
Query: 253 KELLEAL 259
KEL E L
Sbjct: 324 KELAEEL 330
>gi|76801491|ref|YP_326499.1| transcription initiation factor TFB 1 [Natronomonas pharaonis DSM
2160]
gi|76557356|emb|CAI48933.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 322
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 59/304 (19%)
Query: 3 CTSCGSKTLTRE-DISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIY 48
C C S +L R D G L+C CG+V +AF++ + Q R G PT
Sbjct: 28 CPECDSDSLVRSGDGGGELVCEDCGLVIEEENIDRGPEWRAFNHSERQSKSRVGAPTTQT 87
Query: 49 VHVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMID 96
+H G + +++K+K Y E + L + G+R++Q + ID
Sbjct: 88 MH--DKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 145
Query: 97 KIT---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+++ D + G + A Y R + + EVA
Sbjct: 146 RMSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAD 205
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V + E+GR + + L+L L VD V R L E + + R+
Sbjct: 206 VARVEQKEIGRTYRYIAQELSLGLEPVDPVQYVPRFCSE------LGLSEEVEQKTRE-- 257
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ + + +G+ P A + L VA+ T VT R RY+E
Sbjct: 258 --IIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQEQ 315
Query: 256 LEAL 259
+EAL
Sbjct: 316 IEAL 319
>gi|170583367|ref|XP_001896547.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
gi|158596222|gb|EDP34611.1| Transcription factor TFIIB repeat family protein [Brugia malayi]
Length = 769
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CGS + + G C+ CG V + + ++ G + VG
Sbjct: 5 CPNCGSSEIDDDSARGDSTCMGCGTVLEESTIVSDVAFQENAGGGHSLVGQFISKERGQP 64
Query: 53 TAGTG-SALNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
T +G L+++E + Y+ KLI+E+ +L + N F G
Sbjct: 65 TNLSGVPGLSHQESREITYYKGRKLIEEIASQLRINQHCVNTAFNFFKMCVSRNFTRGRV 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD 163
++ AC Y+ RL++ + + + + + +V++LGR + + L + LP D
Sbjct: 125 RSHVVAACLYMTCRLENTAHLLLDFSDITQVNVFDLGRTLNFLTRSLKINLPTTD 179
>gi|15789908|ref|NP_279732.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|169235629|ref|YP_001688829.1| transcription initiation factor TFB [Halobacterium salinarum R1]
gi|14195246|sp|Q9HRE6.1|TF2B2_HALSA RecName: Full=Transcription initiation factor IIB 2; Short=TFIIB 2
gi|10580312|gb|AAG19212.1| transcription initiation factor IIB [Halobacterium sp. NRC-1]
gi|167726695|emb|CAP13481.1| transcription initiation factor TFB [Halobacterium salinarum R1]
Length = 325
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 65/312 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGI 47
+ C CG + + E+ G +CV CG+V +AF++ + R G PT
Sbjct: 30 LTCPECGGQVIDDEE-HGESVCVDCGLVVEENGIDRGPEWRAFNSTEKDEKSRVGAPTTN 88
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLD----------LTGQRSIQIKNMIDK 97
+H G + + +++K Y N L K+ + +K + +
Sbjct: 89 MMH--DKGLSTNIGWQDKDAY-GNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------IS 131
I LG P + + V+ R L + LP I
Sbjct: 146 IERMASALG--LPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSID 203
Query: 132 EVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRM 191
EVA+V D E R +V L+L++ D R ++LD + D +
Sbjct: 204 EVANVSRIDEMEFKRTYRYIVRELSLEVAPADPAQYVPRFA--------SDLD--LPDEV 253
Query: 192 RKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
++ L++ A +T+G+ P+ + A + L V V++ + VT R R
Sbjct: 254 ERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNR 313
Query: 252 YKELLEALVKVA 263
Y+ELLEA A
Sbjct: 314 YQELLEATEAAA 325
>gi|335437678|ref|ZP_08560448.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
gi|334895047|gb|EGM33228.1| Transcription factor TFIIB cyclin-related protein [Halorhabdus
tiamatea SARL4B]
Length = 328
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 67/314 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +T + G +C CG+V +AFD+ + R G PT
Sbjct: 31 CPECGGDLVTDSE-RGETVCSECGLVVEEDEIDPGPEWRAFDSAEKDKKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDKGLSTNIGWQNKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 149 AS---ALG--LPENVRETASVIYRRALDEDLLPGRSIEGVATASLYAAARQAGNPRSLDE 203
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+ V D EL R VV LNL++ D S R + ++LD + + +
Sbjct: 204 IERVSRIDRMELTRTYRYVVRELNLEVKPADPESYVPRFV--------SDLD--LSEEVS 253
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+Q L+ A K + +G+ P+ + A + L+ + V++ + + VT R RY
Sbjct: 254 RQARELIESARKEGVLSGKSPVGIAAAAIYAAALLSNERITQGEVSEVANISEVTIRNRY 313
Query: 253 KELLEALVKVAQAL 266
KELLEA +Q +
Sbjct: 314 KELLEAKSAGSQQV 327
>gi|167043157|gb|ABZ07866.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_ANIW141J13]
Length = 305
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 107/299 (35%), Gaps = 52/299 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGP------------TGIYVH 50
C CG K L + +G + C +CG V R P T + +H
Sbjct: 15 CLRCGEKALITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKERTGVGTSLTIH 74
Query: 51 ----------VGTAGTGSALNYKEKK------IYES---NKLIDE-----------LTFK 80
TG L+ KK +++S NK ID L K
Sbjct: 75 DQGLSTVINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDK 134
Query: 81 LDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140
L L+ + + K + + G L+ + Y R + +++ N
Sbjct: 135 LSLSDSVVEKAAYIYRKAINKKLVKGRTISSLMASALYAACREVGTPRTLKDISDTTNIK 194
Query: 141 VYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLN 200
+L +V L+LK+P VD V R+ S++ + ++ ++ LL
Sbjct: 195 KRDLASNYRLLVNELDLKIPVVDSVHNVARIA--SKI--------GISEKTKRLATELLR 244
Query: 201 CAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
A + LT G+ PM + L G + ++A+ T VT R RYK LLE L
Sbjct: 245 KAEESELTAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYKGLLELL 303
>gi|452206957|ref|YP_007487079.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452083057|emb|CCQ36340.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 318
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 59/304 (19%)
Query: 3 CTSCGSKTLTRE-DISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIY 48
C C S +L R D G L+C CG+V +AF++ + Q R G PT
Sbjct: 24 CPECESDSLVRSADGGGELVCEDCGLVIEEENIDRGPEWRAFNHSERQSKSRVGAPTTQT 83
Query: 49 VHVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMID 96
+H G + +++K+K Y E + L + G+R++Q + ID
Sbjct: 84 MH--DKGLTTQIDWKDKDAYGRSISSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEID 141
Query: 97 KIT---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+++ D + G + A Y R + + EVA
Sbjct: 142 RMSSALGVPRSVREVASVIYRRALDDDLIRGRSIEGVATAALYAACRQEGIPRSLDEVAE 201
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V + E+GR + + L+L L VD V R L E + + R+
Sbjct: 202 VARVEQKEIGRTYRYIAQELSLGLEPVDPVQYVPRFCSE------LGLSEEVEQKTRE-- 253
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ + + +G+ P A + L VA+ T VT R RY+E
Sbjct: 254 --IIEVTAEKGMLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQEQ 311
Query: 256 LEAL 259
+EAL
Sbjct: 312 IEAL 315
>gi|73979322|ref|XP_850010.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Canis lupus
familiaris]
Length = 421
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICALLYADLEVFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELADETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVS----------VKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV-- 274
S K+ NV ++ C + R +ELL L+++A+ L W + + +
Sbjct: 236 SLQPSERLTCSLARFCKLANV--DLPCPASS---RLQELLAVLLRMAEQLAWLQVLRLDK 290
Query: 275 KNVLKNAPFVMNYMEMKSMEKRKEERDG 302
++V+K+ + + ++ + RK RDG
Sbjct: 291 RSVVKH---IGDLLQHRHTLVRKAFRDG 315
>gi|367004042|ref|XP_003686754.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
gi|357525056|emb|CCE64320.1| hypothetical protein TPHA_0H01120 [Tetrapisispora phaffii CBS 4417]
Length = 602
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 57/288 (19%)
Query: 1 MPCTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT----- 53
+ C CG R+ + + L+CV CG V + +++ + G V G+
Sbjct: 3 LACKLCGETNFVRDLSNANNDLVCVGCGTVSEENPIVSEVTFGETSAGAAVVQGSFISGD 62
Query: 54 --------AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
G SA+ +E + + + + ++ L + D ITD F
Sbjct: 63 QAHAAFTSHGGSSAMESREATLNNARRKLRAVSHALRIQ-----------DYITDAAF-- 109
Query: 106 GDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRV 151
W+ + +I AC YV R + + + +S L VY +G ++
Sbjct: 110 -QWYKLALHHNFVQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKM 168
Query: 152 VEFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFL 207
V+ L++ LP D S+F +Q F +L E + ++ K V L K ++
Sbjct: 169 VKRLHITNLPLAD-PSLF--------IQHFAEKLDLGEKKI-KVIKDAVKLAQRMSKDWM 218
Query: 208 TTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 219 YEGRRPAGIAGACILLACRMNNLRRTHSEIVAISHVAEETLQQRLNEF 266
>gi|296109616|ref|YP_003616565.1| transcription factor TFIIB cyclin-related protein
[methanocaldococcus infernus ME]
gi|295434430|gb|ADG13601.1| Transcription factor TFIIB cyclin-related protein
[Methanocaldococcus infernus ME]
Length = 320
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 107/306 (34%), Gaps = 66/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + + S ++C CG V +AFD+ R G Y
Sbjct: 26 CPICGSKEIVSD--SSEIVCAKCGCVIKEQIFDAGPEWRAFDHEQKVKRCRVGAPMTYT- 82
Query: 51 VGTAGTGSALNYKEKKIY----ESNKLIDELTFKLDLTGQRSIQIKNM-----------I 95
+ G + ++++ K Y +NK + + QR I++ + +
Sbjct: 83 IHDKGLSTVIDWRNKDAYGKDISANKRAELYRLR---KWQRRIRVSDASERNLAFALSEL 139
Query: 96 DKITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEV 133
D+I + GL G ++ A Y R + E+
Sbjct: 140 DRIAS-KLGLPKHVKEHASLLYREAVRKGLIRGRSIEGVVAATIYAACRKYRVPRTLDEI 198
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A V D E+GR + L +KL + + R L G +
Sbjct: 199 AEVSRVDKKEIGRTYRFLARELKIKLAPTNPIDYVPRFASELGLPG----------EVES 248
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ + +L A + LT+GR P V A + L G VA+ T VT R RYK
Sbjct: 249 KAIQILKKAAEKGLTSGRGPTGVAAAAIYIASVLLGHRRTQREVAEVAGVTEVTIRNRYK 308
Query: 254 ELLEAL 259
EL E L
Sbjct: 309 ELTEHL 314
>gi|162287069|ref|NP_001088063.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus laevis]
gi|52354750|gb|AAH82860.1| LOC494758 protein [Xenopus laevis]
Length = 660
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 98/269 (36%), Gaps = 23/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CG + + G +C CG V + +++ +G G+ VG
Sbjct: 6 CKNCGCTDIDVDAARGDAVCTGCGSVLEDNIIVSEVQFVEGAGGVSSAVGQFVSSECSGK 65
Query: 53 --TAGTGSALN----YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ GTG N + + + + I L +L L N G
Sbjct: 66 TPSLGTGFHTNVGKESRAQTLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 126 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R G N + SM + L+ + ++ TGRRP + A L+
Sbjct: 186 YIPRFAHLLEF-GDKNHEVSMT------ALRLVQRMKRDWMHTGRRPSGLCGAALLVASR 238
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ I+ V + V T RKR E
Sbjct: 239 MHDFRRTIKEVIRVVKVCESTLRKRLTEF 267
>gi|160333889|ref|NP_001037055.1| TFIIB-related factor [Bombyx mori]
gi|22417141|gb|AAM96688.1| TFIIB-related Factor [Bombyx mori]
Length = 661
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 100/271 (36%), Gaps = 27/271 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHV---- 51
C CGS + + G +C SCG V DN + +G G +V
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTSCGTVLE-DNIIVSEVEFQENAHGGASAIGQFVSADTKG 64
Query: 52 GTAGTGSALNY------KEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFG 104
G G G A N KE + ++ I L +L L Q+ I I N
Sbjct: 65 GATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLN-QQCIDIACNFYKMALSRHLT 123
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
+G AC Y+ R + + +V+ + Y+LGR ++ L + +P D
Sbjct: 124 IGRPVTHTQAACVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDP 183
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R S+L+ E + +R L+ K + +GRRP + A L+
Sbjct: 184 CLYILRFA--SQLKFEDKQHEVSMTALR-----LVQRMKKDSIHSGRRPSGICGAALLIA 236
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ S ++ + V T RKR E
Sbjct: 237 ARLHEFSRTPSDIVRIVKVHESTLRKRMFEF 267
>gi|328785533|ref|XP_623775.3| PREDICTED: transcription factor IIIB 90 kDa subunit-like isoform 2
[Apis mellifera]
Length = 661
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----HVGTAGTGS 58
C +CGS + + G +C CG V ++ ++ P+G + V TG
Sbjct: 6 CRNCGSTDIETDPARGDAVCTECGFVLEDQLIVSETAFKETPSGNMMVLGQFVANDSTGG 65
Query: 59 A--------LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A +N KE + + + K I L +L L N + + G
Sbjct: 66 ATGFGATYHVNGKESRKITLQNAKKGITHLCMQLQLNQHCIDTSMNFYKMALNRQLTRGR 125
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD---- 163
AC Y+ R + + + +++ VL V+ELGR + + L + +P VD
Sbjct: 126 KQAHNHAACVYITCRTEGTAHMLIDISDVLQICVHELGRTYLKFTQALCINIPSVDPCLY 185
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
I+ ++ + + ++ RM++ + +GRRP + A L+
Sbjct: 186 IMRFANKLEFGEKTHEVSMTALRIVQRMKRDSI-----------HSGRRPSGLCGAALLM 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ + ++ K V T RKR E
Sbjct: 235 AARLHEFNRSPTDIIKIVKVHESTLRKRLIEF 266
>gi|448292233|ref|ZP_21482893.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448541523|ref|ZP_21624239.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|448549791|ref|ZP_21628396.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|448555098|ref|ZP_21631138.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
gi|445573033|gb|ELY27560.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445707848|gb|ELZ59696.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-646]
gi|445712839|gb|ELZ64620.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-645]
gi|445717843|gb|ELZ69546.1| transcription initiation factor TFB [Haloferax sp. ATCC BAA-644]
Length = 318
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 46/300 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 22 CPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKDEKSRVGAPTTNMM 81
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 82 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 138
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 139 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQ-----------GFTNLDESMLDRMRKQGVLLLNCA 202
++ E D I + V+R L+ F + D + D ++ LL A
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFAS-DLGLSDESERRARQLLKNA 255
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA +V
Sbjct: 256 KEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQV 315
>gi|134046665|ref|YP_001098150.1| transcription initiation factor IIB [Methanococcus maripaludis C5]
gi|189029855|sp|A4G0F2.1|TF2B_METM5 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|132664290|gb|ABO35936.1| Transcription initiation factor IIB (TFIIB) [Methanococcus
maripaludis C5]
Length = 339
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK++ ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKSIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+ R P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSSRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>gi|412991514|emb|CCO16359.1| predicted protein [Bathycoccus prasinos]
Length = 846
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 41/283 (14%)
Query: 3 CTSCGSKTLTR-EDISGSLICVSCGVV---------QAFDNYDAQLYGRDG----PTGIY 48
C+ C S + D +G C CG + F DG +GI
Sbjct: 6 CSQCKSDVVAEVNDANGFTCCTVCGKILDDSVFSTDPTFSKTSGGAIQVDGNFVPESGIA 65
Query: 49 VHVGTAGTGS-----ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKIT-DG 101
VG G ++ EK + + + I+++ +L + + I + + KI
Sbjct: 66 HSVGRPTRGGRVFGLQIDSHEKTVNKGKQEINQIADRLAMKPREDITTSAHRLYKIAVSR 125
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL-- 159
F G + GAC YVV R +++ + + + VL +VY LG + ++ + L+
Sbjct: 126 NFTRGRRTAQVAGACLYVVCRQENRPYMLIDFSDVLQTNVYVLGGVFLQLCRLMRLEQHP 185
Query: 160 -------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRR 212
P + I +++ R+ +N ++ M++ W + TGRR
Sbjct: 186 LMQRPIDPSLFIHRFADKMNLGKRVHSVSNTALRLVASMKRD----------W-MQTGRR 234
Query: 213 PMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
P + A L ++G +V VH T +KR E
Sbjct: 235 PAGICGAALWVASHVHGFDRSKSDVVSIVHIGEQTLKKRITEF 277
>gi|110668479|ref|YP_658290.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109626226|emb|CAJ52683.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 122/306 (39%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L +++ G +C CG+V +AFD+ + R G PT
Sbjct: 51 CPEC-SGNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKSRVGAPTTKLM 109
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G+AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 110 HDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 168
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 169 A---SALG--LPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDE 223
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+ V D EL R VV L L++ D R ++LD + D
Sbjct: 224 IERVSRVDRMELTRTYRYVVRELKLEIEPADPEQYVPRFA--------SDLD--LSDESE 273
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+Q LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 274 RQARELLRNAKEEAIHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANVSEVTIRNRY 333
Query: 253 KELLEA 258
KELLEA
Sbjct: 334 KELLEA 339
>gi|348554237|ref|XP_003462932.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Cavia
porcellus]
Length = 419
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ RL Q ++ + D+M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCGSFRLFQASPSVPAKYVEDKDKMLSRTLQLVELASETWLVTGRHPLPVITAAAFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
++ + K + T+ R +EL+ L+++A+ L W + + + ++V+K
Sbjct: 236 SLQPAGRLTCSLARFCKMANVTLPYPAASRLQELVAVLLRMAEQLAWLQVLKLDKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + M R +DG
Sbjct: 296 H---IGDLLQHRHMLVRMAFQDG 315
>gi|288559971|ref|YP_003423457.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
gi|288542681|gb|ADC46565.1| transcription initiation factor TFIIB Tfb1 [Methanobrevibacter
ruminantium M1]
Length = 264
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ A Y R + E+A V E+GR + L++KLP V R
Sbjct: 121 VVAASLYAACRQCKVPRTLDEIAEVSRVSKKEVGRTYRFLTRELHIKLPPTSPVDYVPRF 180
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G ++ + + ++ A++ LT+GR P V A L L G
Sbjct: 181 ASELGLSG----------EVQSRSIEIIEKAMEKGLTSGRGPTGVAAAALYIASVLLGER 230
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
+VA T VT R RYKEL E L
Sbjct: 231 KTQRDVADVAGVTEVTIRNRYKELTEQL 258
>gi|385803942|ref|YP_005840342.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339729434|emb|CCC40691.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 122/306 (39%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L +++ G +C CG+V +AFD+ + R G PT
Sbjct: 51 CPEC-SGNLIQDEARGETVCSDCGLVVDENSIDRGPEWRAFDSAERDQKSRVGAPTTKLM 109
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G+AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 110 HDKGLSTNIGWQDKDAYGNALSARQREQMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 168
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 169 A---SALG--LPESVRETASVIYRRALDEDLLPGRSIEGVATAALYAAARQAGTPRSLDE 223
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+ V D EL R VV L L++ D R ++LD + D
Sbjct: 224 IERVSRVDRMELTRTYRYVVRELKLEIEPADPEQYVPRFA--------SDLD--LSDESE 273
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+Q LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 274 RQARELLRNAKEEAIHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVANVSEVTIRNRY 333
Query: 253 KELLEA 258
KELLEA
Sbjct: 334 KELLEA 339
>gi|169854025|ref|XP_001833690.1| hypothetical protein CC1G_03907 [Coprinopsis cinerea okayama7#130]
gi|116505340|gb|EAU88235.1| hypothetical protein CC1G_03907 [Coprinopsis cinerea okayama7#130]
Length = 650
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDAQLYGRDGPT----- 45
M C+ CG +T+ +D + S IC CG + Q + N Q R GP
Sbjct: 1 MGCSECGGETV-WDDAAASEICTECGTLTDPGQVVLTNQTWANDAGQYPERWGPPPPNTL 59
Query: 46 -GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG--QRSIQIKNMIDKITDGE 102
+ AG G + K Y I L ++ +G R+ + N I G
Sbjct: 60 KNPRTNWALAGQGQE-SRDRKNAYTMANFIKSLAVSMNASGLAPRATTLFNQAKSI--GY 116
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEV 162
F G ++ GAC + +R + I ++A +L C L R V L + V
Sbjct: 117 FRWGRKSKLVAGACLIIALRESSRPDSIHDIAVLLKCSPQLLSRTFISVTSALQITTNPV 176
Query: 163 D 163
D
Sbjct: 177 D 177
>gi|443687873|gb|ELT90726.1| hypothetical protein CAPTEDRAFT_193382 [Capitella teleta]
Length = 398
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 111/299 (37%), Gaps = 43/299 (14%)
Query: 1 MP--CTSCGSKTLTREDISGS-------LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHV 51
MP C+ CG + ED G +C CG + + PTG +
Sbjct: 1 MPDKCSHCGKLAVEWEDCDGHGADVSRRRVCHECGTISDEATFTNSAPMDHAPTGFSDEI 60
Query: 52 ---------GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGE 102
A SA + + + + ++ L + Q + +K+
Sbjct: 61 RHFARSLPSQYALYNSASQHVSRGKKQGLSRMKDVAQTLKCSSALRKQASEIFEKMFHSP 120
Query: 103 FGLGDWFPILIG---ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
+ + I C Y+V R + +S+V + NCDV + R V +NL+L
Sbjct: 121 KVISERIETKITIAMVCLYLVCRNAMWPITVSDVCDIANCDVGKFVRWSREVTTEMNLQL 180
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +DI E++I + + + E +G++ + V FL G+ P VV+A
Sbjct: 181 PMMDI----EQIIPSVCPELSREVHE------HTKGIIQVCREV--FLADGKNPQNVVIA 228
Query: 220 VLVFVVE----LNGVSVKIE------NVAKEVHCTVVTCRKRYKELLEALVKVAQALPW 268
+ +N VK+ N+ K R +EL + L+++A LPW
Sbjct: 229 AAYHAWQGSDFINNRKVKLAAFVKKFNLHKNCRYKSSVANLRSRELSKLLIQLASELPW 287
>gi|435851445|ref|YP_007313031.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
gi|433662075|gb|AGB49501.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Methanomethylovorans hollandica
DSM 15978]
Length = 337
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 114/306 (37%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L ++ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVQDYERAELVCSECGLVVDAEFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R L+G ++
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+GV +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|401841983|gb|EJT44282.1| BRF1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 597
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C SC R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKSCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGESSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHASFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + V H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEVVAVSHVAEETLQQRLNEF 262
>gi|406603760|emb|CCH44785.1| Transcription factor IIIB subunit [Wickerhamomyces ciferrii]
Length = 559
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 27/273 (9%)
Query: 3 CTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQLYGRDGPTGI-----------YV 49
C SCG TR+ S L C +CG V + +++ + TG
Sbjct: 8 CKSCGCTDFTRDIHSASSDLACQNCGRVFEENPIVSEVTFGESSTGAATVQGAFVGADQA 67
Query: 50 HVGTAG--TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
H AG G++++ + K + + + I + L + S F G
Sbjct: 68 HAAFAGGPRGNSMDSRTKTLASAKRKIRAVATALKIPEYVSDAAYQWFSLALSNNFVKGR 127
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIVS 166
+I AC Y+ R + + + ++ L VY +G ++V+ L++ KLP D S
Sbjct: 128 KSQNVIAACLYISCRKEKTHHMLIDFSARLQISVYSVGATFLKMVKALHITKLPLAD-PS 186
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMR--KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
+F +Q F + DR++ K V L + ++ GRRP V A L+
Sbjct: 187 LF--------IQHFAEKLDFGDDRVKIVKDAVKLAQRMSEDWIHEGRRPAGVAGACLLLA 238
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+N + H T ++R E E
Sbjct: 239 ARMNNHRRTHGEIVAVAHVGEDTLQRRLNEFKE 271
>gi|292655211|ref|YP_003535108.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|448596702|ref|ZP_21653840.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
gi|291371352|gb|ADE03579.1| transcription initiation factor TFB [Haloferax volcanii DS2]
gi|445740583|gb|ELZ92088.1| transcription initiation factor TFB [Haloferax alexandrinus JCM
10717]
Length = 332
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 124/300 (41%), Gaps = 46/300 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 36 CPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKDEKSRVGAPTTNMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNER-FRTRDSKERN--LKQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 153 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 210
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQ-----------GFTNLDESMLDRMRKQGVLLLNCA 202
++ E D I + V+R L+ F + D + D ++ LL A
Sbjct: 211 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFAS-DLGLSDESERRARQLLKNA 269
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA +V
Sbjct: 270 KEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQV 329
>gi|159041370|ref|YP_001540622.1| transcription initiation factor IIB [Caldivirga maquilingensis
IC-167]
gi|189029851|sp|A8MCX6.1|TF2B_CALMQ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|157920205|gb|ABW01632.1| Transcription factor TFIIB cyclin-related [Caldivirga
maquilingensis IC-167]
Length = 336
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G +I AC ++ R+ + E++ E+ R + L ++LP D
Sbjct: 186 GRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIRLPLSDPR 245
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+++ +L G + K+ + +L A LT G+ P + A +
Sbjct: 246 QYVPKIVEQLKLPG----------DIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIAS 295
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G + +A+ T VT R RYKEL + L
Sbjct: 296 LLKGEVRTQKEIAQAAQVTEVTVRNRYKELAKEL 329
>gi|410956408|ref|XP_003984834.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Felis catus]
Length = 421
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + V ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTVCALLYADLDVFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ RL Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFRLFQASPSVPAKYVEDKEKMLSRTLQLVELADETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
S ++ ++A+ V R +ELL L+++A+ L W + + + ++V+K
Sbjct: 236 SLQPSHRLTCSLARFCKLANVDLPYPASSRLQELLSVLLRMAERLAWLQVLKLDKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + RK RDG
Sbjct: 296 H---IGDLLQHRHTLVRKAFRDG 315
>gi|307354313|ref|YP_003895364.1| transcription factor TFIIB cyclin-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157546|gb|ADN36926.1| Transcription factor TFIIB cyclin-related protein [Methanoplanus
petrolearius DSM 11571]
Length = 335
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L C +CG+V +AFD+ R G P +
Sbjct: 39 CPECGSRQLIHDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 98
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 99 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 152
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 153 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 212
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 213 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKG----------EVQ 262
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 263 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 322
Query: 253 KELLEAL 259
KEL E L
Sbjct: 323 KELAEKL 329
>gi|118092254|ref|XP_421405.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Gallus gallus]
Length = 681
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 97/276 (35%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDG--- 43
C +CG + + G +C CG V Q +N Q DG
Sbjct: 7 CAACGCSEIEVDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 66
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G + ++G L +++I+ L +L L N
Sbjct: 67 TPTLGGGFHANLGKESRAQTLQNGKRQIHH-------LGNQLQLNQHCLDTAFNFFKMAV 119
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 120 SKHLTRGRKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 179
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 180 PAIDPCLYIPRFAHMLEF-GDKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 232
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V + V T RKR E
Sbjct: 233 ALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEF 268
>gi|328769282|gb|EGF79326.1| hypothetical protein BATDEDRAFT_89947 [Batrachochytrium
dendrobatidis JAM81]
Length = 508
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 9/182 (4%)
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
E LG + C Y+V++ +SEV N + + ++ L ++LPE
Sbjct: 125 ELTLGPKAKTCLSVCLYIVLQQCRIVRTLSEVLFQFNICIDRFSAIYFKITGILAVQLPE 184
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
DI R+ LD + R+ +LN A +L GR+ + + +
Sbjct: 185 ADIRIFLPRLCL-----AVYPLDLANRTRLESLASTVLNIAKHAWLDVGRKESSIQASTI 239
Query: 222 VFVVEL---NGVSVKIEN-VAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNV 277
+ E N S++I N V+ C + R +E + ++K A +P+ VT N+
Sbjct: 240 LAAYEAMKSNSCSLRIVNLVSSAAGCNPNLAKLRLREFKQHILKYAHHMPYFSHVTKFNL 299
Query: 278 LK 279
K
Sbjct: 300 HK 301
>gi|219851004|ref|YP_002465436.1| transcription initiation factor IIB [Methanosphaerula palustris
E1-9c]
gi|254784087|sp|B8GJQ9.1|TF2B_METPE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|219545263|gb|ACL15713.1| Transcription factor TFIIB cyclin-related [Methanosphaerula
palustris E1-9c]
Length = 334
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S+ L + L+C +CG+V +AFD+ R G P +
Sbjct: 38 CPECKSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 97
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 98 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 151
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 212 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 261
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 262 SRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 253 KELLEAL 259
KEL E L
Sbjct: 322 KELAEKL 328
>gi|320580982|gb|EFW95204.1| TFIIIB B-related factor [Ogataea parapolymorpha DL-1]
Length = 534
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 25/269 (9%)
Query: 3 CTSCGSKTLTREDISGS--LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------- 53
C +CGS R+ + S L C CG V + ++ + P+G + G+
Sbjct: 5 CKNCGSTEFERDHKTASSDLACARCGTVIEENPIVLEVTFGEAPSGAAMLQGSIVGADQT 64
Query: 54 -AGTGS---ALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
A G+ +L+ +E+ + K I + L + + F G
Sbjct: 65 RANFGNNRGSLDSREQTLQNGKKRIRNVAAALKIKDYIADAACQWFQLALTNNFVQGRRS 124
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIVSMF 168
++ AC Y+ R + + + +S L VY +G ++V+ L++ LP VD S+F
Sbjct: 125 QNVVAACLYIACRKEKTHHMLIDFSSRLQISVYAVGATFLKMVKALHITSLPLVD-PSLF 183
Query: 169 ERVIRNSRLQGFT-NLD-ESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+Q F LD ML ++ + L + + ++ GRRP + A ++
Sbjct: 184 --------IQNFAEKLDFGRMLPKVINDAIKLAHRMSEDWIHEGRRPAGIAGACILLAAR 235
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + H T +KR E
Sbjct: 236 MNNFRRTHSEIVAVTHIGESTIQKRLNEF 264
>gi|389846515|ref|YP_006348754.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448615811|ref|ZP_21664574.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388243821|gb|AFK18767.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445751942|gb|EMA03373.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 345
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 44/297 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C CGS+TL + G +C CG+V +AF++ + R G PT
Sbjct: 47 LSCPECGSETLVSDSEHGETVCDECGLVVQENEIDRGPEWRAFNSSEKDQKSRVGAPTTN 106
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGE 163
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
I LG P + + V+ R L+D LP + V +Y RM +
Sbjct: 164 IDRMASALG--LPESVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLD 221
Query: 156 NL----KLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNC 201
+ ++ + +I + V+R +L+ E + D ++ LL
Sbjct: 222 EITSVSRVEKEEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKN 281
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
A + + +G+ P+ + A + L V V+ + + VT R RY ELLEA
Sbjct: 282 AKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSGVANISEVTIRNRYHELLEA 338
>gi|255719280|ref|XP_002555920.1| KLTH0H00924p [Lachancea thermotolerans]
gi|238941886|emb|CAR30058.1| KLTH0H00924p [Lachancea thermotolerans CBS 6340]
Length = 571
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 117/314 (37%), Gaps = 31/314 (9%)
Query: 3 CTSCGSKTLTREDISGS---LICVSCGVVQAFDNYDAQL-YGRDGPTGIYVH-------- 50
C CG R DIS + L+C CG V + +++ +G VH
Sbjct: 4 CKVCGGVDFER-DISNANNDLVCKDCGTVSEDNPIVSEVTFGESSSGAAVVHGSYVGAGQ 62
Query: 51 ----VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G G SAL ++ I + + + ++ L + + F G
Sbjct: 63 SHAAFGPRGGSSALESRQATINNARRKLRAVSHALGIPEYVTDAATQWYTLALSNNFVQG 122
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIV 165
+I AC Y+ R + + + +S L VY +G ++V+ L++ KLP D
Sbjct: 123 RRSQNVIAACLYIACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKALHITKLPLAD-P 181
Query: 166 SMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
S+F +Q F +L + + ++ K V L + ++ GRRP + A L+
Sbjct: 182 SLF--------IQHFAEKLDLGDKKI-KVVKDAVKLAQRMARDWMYEGRRPAGIAGACLL 232
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAP 282
+N + + H T ++R E + D V++ +
Sbjct: 233 LACRMNNLRRTHSEIVAVSHVAEETLQQRLNEFKSTKSGKLSINEFRDDAAVESEAQPPS 292
Query: 283 FVMNYMEMKSMEKR 296
F N + K + ++
Sbjct: 293 FQRNRAKEKRLRQK 306
>gi|432328477|ref|YP_007246621.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
gi|432135186|gb|AGB04455.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Aciduliprofundum sp. MAR08-339]
Length = 312
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 114/294 (38%), Gaps = 40/294 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G L+C+ CG+V +AFD+ R G Y
Sbjct: 16 CPECGSTHLVRDYERGELVCMDCGLVIDEAYIDQGPEWRAFDSEQRDSRSRTGAPMTYT- 74
Query: 51 VGTAGTGSALNYKEKKIY-ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF------ 103
+ G + +++K K Y +S Q+ I++ N ++
Sbjct: 75 IHDKGLSTEISWKNKDSYGKSIPTRSRAQLYRLRKWQKRIRVSNSAERNLSQALQELERM 134
Query: 104 --GLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFLNL 157
LG P + + V+ R + + + + V+ +Y RM I R +E ++
Sbjct: 135 ASNLG--LPKDVRETAAVIYRKAVKENMIRGRSIEGVVAASIYAACRMLGIPRTLEEIST 192
Query: 158 --KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDR----------MRKQGVLLLNCAVKW 205
++ + +I ++ + R +L + E +DR ++ + ++ A +
Sbjct: 193 VTRIKKREIGRVYRIMSRTLKLNIYPTKPEDYIDRFCSKLKLSGEVKTKAYEIIKMARER 252
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+ +GR P V A + L G VA T VT R RYKEL+E L
Sbjct: 253 DIISGRGPTGVAAAAIYIAAILMGERRTQREVADVAGVTEVTIRNRYKELVEKL 306
>gi|198427438|ref|XP_002130866.1| PREDICTED: similar to LOC494758 protein [Ciona intestinalis]
Length = 657
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 105/271 (38%), Gaps = 29/271 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG----TAGTG- 57
C +C S + G +C++CG V + +++ ++ G VG T G+
Sbjct: 5 CPNCKSSEFDVDPARGDTVCMNCGSVLEENRIVSEISIQENADGSSSVVGQFVTTEGSYN 64
Query: 58 ---SALNY---KEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDW 108
S Y KE + + + I ++ +L+L N G
Sbjct: 65 PHLSGFQYGIGKESRQITLDKGKNQIRDMAAQLNLNRHCVDTAFNFFKMAISKRLSRGRR 124
Query: 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD----I 164
++ AC Y+ R + + + + + +V+ LG++ + + L++ LP +D I
Sbjct: 125 ITHIVAACLYMTCRTEGTPHLLLDFSDITQVNVFILGKVFLLLAKELHINLPVLDPCMYI 184
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R+ N + + ++ RM++ W + TGRRP + A L+
Sbjct: 185 TRFAHRLDFNEKTHEVSVAAMRLVSRMKRD----------W-IHTGRRPSGLCGAALLVA 233
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+G + + +V K T RKR E
Sbjct: 234 ARLHGFNCDLNDVVKVARIGHDTIRKRLNEF 264
>gi|313126970|ref|YP_004037240.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312293335|gb|ADQ67795.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
Length = 327
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 113/305 (37%), Gaps = 64/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS LT + G +C CG+V +AFD + R G PT
Sbjct: 32 CPECGSSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKSRVGAPTTNMM 91
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ +++ + + +E D + Q ID++
Sbjct: 92 HDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGEIDRMA 151
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LDD LP + E+
Sbjct: 152 S---ALG--LPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 206
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
+V D E+ R VV LNL++ D R S L + D +
Sbjct: 207 ETVSRVDKDEISRTYRYVVRELNLEIEPADPEQYVPRFA--SEL--------GLNDESER 256
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 257 HARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYH 316
Query: 254 ELLEA 258
ELLEA
Sbjct: 317 ELLEA 321
>gi|403215833|emb|CCK70331.1| hypothetical protein KNAG_0E00630 [Kazachstania naganishii CBS
8797]
Length = 635
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 110/290 (37%), Gaps = 60/290 (20%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCKKTEFVRDLSNANNDLVCQNCGVVSE-DNPIVSEVTFGETSSGAAMVQGSFIS 59
Query: 51 VGTA-------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF 103
G + G SAL+ +E + + + + ++ L + D ITD F
Sbjct: 60 AGQSHASFMSHGGSSALDSREATLNNARRKLRAVSHALSIP-----------DYITDAAF 108
Query: 104 GLGDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149
W+ + +I AC YV R + + + +S L VY +G
Sbjct: 109 ---QWYKLALSYNFVQGRRSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFL 165
Query: 150 RVVEFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKW 205
++V+ L++ KLP D S+F +Q F +L + + ++ L + W
Sbjct: 166 KMVKRLHITKLPMAD-PSLF--------IQHFAEKLDLGDKKIKVVKDAVKLAQRMSDDW 216
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 217 MF-EGRRPAGIAGACVLLACRMNNLRRTHTEIVSVSHVAEDTLQERLNEF 265
>gi|330507703|ref|YP_004384131.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
gi|328928511|gb|AEB68313.1| transcription initiation factor IIB [Methanosaeta concilii GP6]
Length = 337
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 109/304 (35%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C C S TL R+ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECKSHTLVRDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ D
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKTISSKNRAQL-YRLR-KWQRRIRVSNATERNLAFALSELD 157
Query: 108 WFPILIG-------ACSYVVMRLDDKSL-------------------------PISEVAS 135
+G + V + DK+L + E+A
Sbjct: 158 RMASALGLSRNVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+GR V L LKL + R L+G ++ +G
Sbjct: 218 VSRVSRKEIGRTYRFVSRELALKLMPTSPIDYIPRFCSGLNLKG----------EVQAKG 267
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 268 IEILRQAAEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYKEL 327
Query: 256 LEAL 259
E L
Sbjct: 328 AEEL 331
>gi|448288563|ref|ZP_21479761.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|445568948|gb|ELY23523.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 318
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 113/305 (37%), Gaps = 64/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS LT + G +C CG+V +AFD + R G PT
Sbjct: 23 CPECGSSNLTTDAEHGETVCDDCGLVVEEDEIDRGPEWRAFDAREKDQKSRVGAPTTNMM 82
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ +++ + + +E D + Q ID++
Sbjct: 83 HDRGLSTNIGWQNKDAYGNSLSSTQRQKMQRLRTWNERFRTRDAKERNLKQALGEIDRMA 142
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LDD LP + E+
Sbjct: 143 S---ALG--LPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 197
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
+V D E+ R VV LNL++ D R S L + D +
Sbjct: 198 ETVSRVDKDEISRTYRYVVRELNLEIEPADPEQYVPRFA--SEL--------GLNDESER 247
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 248 HARQLLRTAKEQGIHSGKSPVGLAAAAIYAASLLANEKVTQSEVSEVANISEVTIRNRYH 307
Query: 254 ELLEA 258
ELLEA
Sbjct: 308 ELLEA 312
>gi|389585362|dbj|GAB68093.1| transcription factor IIIb subunit [Plasmodium cynomolgi strain B]
Length = 820
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 104/263 (39%), Gaps = 17/263 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT--AGTGSAL 60
C +C S + + G +IC+ CG V + L + G VG +G+
Sbjct: 8 CKNCYSTDVETNEGQGEVICLRCGSVLEENKIVESLEFVENNNGAISMVGQFVPASGNKS 67
Query: 61 NYKEKKIYESNKL--------IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL 112
+ ES +L I ++ L L+ Q + + F +G +
Sbjct: 68 FILSWGVRESRELSLQKGYINIQKIADHLHLSTQHVEAAQRIYLMALQRNFTMGRNNSYV 127
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+C Y + R + + + + + +L V LG+ +++ L+L +P +D ER
Sbjct: 128 AASCLYTICRREKSPVMLIDFSDILQTPVKPLGKTFLKLLRLLHLSVPNIDPSLYLERFA 187
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
L+ + + ++ G+ L+ + ++ TGRRP + A L+ ++G+ V
Sbjct: 188 HKLNLK-------NAIYKVTYTGIKLIQAMTRDWICTGRRPTGLCGAALLISTRMHGIFV 240
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+A V + T KR E
Sbjct: 241 HSNTIANIVRISNPTIIKRLSEF 263
>gi|366994093|ref|XP_003676811.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
gi|342302678|emb|CCC70454.1| hypothetical protein NCAS_0E03840 [Naumovozyma castellii CBS 4309]
Length = 657
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 112/289 (38%), Gaps = 58/289 (20%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C TR+ + + L+C+SCGVV DN + G G ++
Sbjct: 68 MPICKNCKGTDFTRDLSNANNDLVCLSCGVVSE-DNPIVSEVTFGETSAGAAMVQGSFIG 126
Query: 51 VGTAGTG-------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF 103
G + G SAL +E + + + + ++ L N+ + ITD F
Sbjct: 127 AGQSHAGFMSHGGSSALESRENTLNNARRKLRAVSHAL-----------NIPEYITDAAF 175
Query: 104 GLGDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149
W+ + +I +C YV R + + + +S L VY +G
Sbjct: 176 ---QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFL 232
Query: 150 RVVEFLNL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR--KQGVLLLNCAVKWF 206
++V+ L++ +LP D S+F +Q F E +++ K V L +
Sbjct: 233 KMVKRLHITELPLAD-PSIF--------IQHFAEKLELGDKKIKVVKDAVKLAQRMSHDW 283
Query: 207 LTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ GRRP + A ++ +N + + H T ++R E
Sbjct: 284 MFEGRRPAGIAGACILLACRMNNLRRTHSEIVAVSHVAEDTLQQRLNEF 332
>gi|385804846|ref|YP_005841246.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339730338|emb|CCC41667.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 374
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R+D + I E+ASV E+ R ++ L+L++P + + R
Sbjct: 237 YAASRIDGVARSIDELASVSRVPALEIKRTYRYIIRELDLQIPPTNPIEYIGR------- 289
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
F + E D ++ L A + + +G+ P+ + + L +L + +
Sbjct: 290 --FASAIECN-DETERRARALTQQATEKGVHSGKHPVGIAASALYAAGQLCNDRLTQSEI 346
Query: 238 AKEVHCTVVTCRKRYKELLEALVKV 262
+ + VT R RY+E+LEA +V
Sbjct: 347 SNAADVSEVTIRNRYREILEAAEEV 371
>gi|307595018|ref|YP_003901335.1| Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550219|gb|ADN50284.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta distributa DSM
14429]
Length = 336
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 108/305 (35%), Gaps = 63/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS T + +G +IC CG V +AF + + R G G
Sbjct: 40 CPYCGSTTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKEARARAG--GPLNR 97
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRS---------------IQIKNMI 95
+ + + +++ K S K +D + KL++ R IQ N +
Sbjct: 98 LTSEALTTTIDWATKDA--SGKELD-IKRKLEILKYRKWQQRVRVQTSYERNIIQAMNEL 154
Query: 96 DKIT----------DGEFGL-----------GDWFPILIGACSYVVMRLDDKSLPISEVA 134
+I+ D G+ G ++ AC ++ R + E++
Sbjct: 155 SRISSQLGIPKACVDEAMGIYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEIS 214
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+ R + L ++LP D R++ +L G + K+
Sbjct: 215 QYTRASRKEVARCFRLIARELGVRLPLSDPKLYVPRIVEQLKLSG----------EILKE 264
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+ +L A + LT G+ P + A + L G + VA T VT R RYKE
Sbjct: 265 ALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLKGEVRTQKEVAMAAQVTEVTVRNRYKE 324
Query: 255 LLEAL 259
L L
Sbjct: 325 LAREL 329
>gi|432099969|gb|ELK28863.1| Transcription factor IIIB 50 kDa subunit [Myotis davidii]
Length = 421
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDMFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q +L ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQATPSLPAKYMEDKEKMLSRTLQLVELADETWLVTGRHPLPVITAAAFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPW 268
S ++ ++A+ V R +ELL L+++A+ L W
Sbjct: 236 SLQPSARLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|257388719|ref|YP_003178492.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171026|gb|ACV48785.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 317
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 116/303 (38%), Gaps = 59/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S ++ D SG LIC CG+V +AF++ + Q R G PT +
Sbjct: 25 CPECDSTAIS-TDGSGELICEDCGLVIEDENIDRGPEWRAFNHSERQSKSRVGAPTTQTM 83
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDEL--------TFKLDLTGQRSIQIK-NMIDK 97
H G + +++K+K Y S+K ++ + G+R++Q + ID+
Sbjct: 84 H--DKGLTTTIDWKDKDAYGRSISSKKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 141
Query: 98 IT---------------------DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ D + G + +C Y R + + EV+ V
Sbjct: 142 MASALGVPRSVREVASVIYRRALDEDLIRGRSIEGVATSCLYAACRQEGIPRSLEEVSDV 201
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+GR V + L LK+ VD R S L+ + + ++ +
Sbjct: 202 SRVEQKEIGRTYRYVAQELKLKMEPVDPKQYVPRFA--SELE--------LSEEVQSKAN 251
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+++ + L +G+ P A + L VA T VT R RY+E +
Sbjct: 252 EIIDVTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQI 311
Query: 257 EAL 259
EA+
Sbjct: 312 EAM 314
>gi|303283326|ref|XP_003060954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457305|gb|EEH54604.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1016
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 33/228 (14%)
Query: 46 GIYVHVGTAGT---GSALNYKEKKIYESNKLIDELTFKL------DLTGQRSIQIKNMID 96
G V GT G G ++ EK I + I ++ +L D+TG K +
Sbjct: 70 GQGVSRGTRGGRLFGLQVDSHEKTINKGKHEIQQVADRLGIRPREDITGAAHRLYKLAVQ 129
Query: 97 KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN 156
+ F G + GAC Y+V R + + + + + V+ +VY LG + ++ L
Sbjct: 130 R----NFTRGRRTQQVAGACLYIVCRQESRPYMLIDFSDVVQTNVYVLGAVFLQLCRLLR 185
Query: 157 LKL---------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFL 207
L+ P + I +++ R+ N ++ M++ ++
Sbjct: 186 LEQHPLISKPIDPSLFIHRFADKLNLGRRMHAVANTALRLVASMKRD-----------WM 234
Query: 208 TTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
TGRRP V A L L+G +V VH T RKR E
Sbjct: 235 QTGRRPSGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVSEF 282
>gi|385803088|ref|YP_005839488.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
gi|339728580|emb|CCC39735.1| transcription initiation factor TFB [Haloquadratum walsbyi C23]
Length = 346
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 48/304 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L +D G +C CG+V +AFD+ + R G PT
Sbjct: 50 CPECESTQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKSRVGAPTTNLM 109
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ +++ + + +E F+ + +R++ K + ++
Sbjct: 110 HDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNER-FRTRDSKERNL--KQALGEVD 166
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LD++ LP + V +Y R + E
Sbjct: 167 RMASALG--LPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 155 LNL-KLPEVDIVSMFERVIRNSRLQ------------GFTNLDESMLDRMRKQGVLLLNC 201
N+ ++ +I + V+R +LQ ++LD + D ++ LL
Sbjct: 225 TNVSRVGRDEIARTYRYVVRELKLQIKPADPEQYVPRFASDLD--LSDEAERRARQLLRS 282
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + + +G+ P+ + A + L V + V+ + + VT R RY ELLEA +
Sbjct: 283 AKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHELLEAEEQ 342
Query: 262 VAQA 265
++ A
Sbjct: 343 LSTA 346
>gi|110667646|ref|YP_657457.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
gi|109625393|emb|CAJ51817.1| transcription initiation factor TFB [Haloquadratum walsbyi DSM
16790]
Length = 346
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 127/304 (41%), Gaps = 48/304 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L +D G +C CG+V +AFD+ + R G PT
Sbjct: 50 CPECESTQLITDDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKSRVGAPTTNLM 109
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ +++ + + +E F+ + +R++ K + ++
Sbjct: 110 HDKGLSTNIGWQDKDAYGNSLSSTQRQKMQRLRTWNER-FRTRDSKERNL--KQALGEVD 166
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LD++ LP + V +Y R + E
Sbjct: 167 RMASALG--LPENVRETASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEI 224
Query: 155 LNL-KLPEVDIVSMFERVIRNSRLQ------------GFTNLDESMLDRMRKQGVLLLNC 201
N+ ++ +I + V+R +LQ ++LD + D ++ LL
Sbjct: 225 TNVSRVGRDEIARTYRYVVRELKLQIKPADPEQYVPRFASDLD--LSDEAERRARQLLRS 282
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + + +G+ P+ + A + L V + V+ + + VT R RY ELLEA +
Sbjct: 283 AKEQGVHSGKSPVGLAAAAVYAASLLINEKVTQKEVSSVANISEVTIRNRYHELLEAEEQ 342
Query: 262 VAQA 265
++ A
Sbjct: 343 LSTA 346
>gi|28076877|ref|NP_079962.1| transcription factor IIIB 50 kDa subunit [Mus musculus]
gi|12849590|dbj|BAB28406.1| unnamed protein product [Mus musculus]
gi|26390009|dbj|BAC25827.1| unnamed protein product [Mus musculus]
gi|68087037|gb|AAH98232.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Mus musculus]
gi|148700849|gb|EDL32796.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Mus musculus]
Length = 420
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDLFSGTYMQMVKLLGLDVPSLCLADLVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ + D+M + +LL+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKDKMLSRTLLLVELADETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
+ ++ + K + + R +ELL L+++A L W + + + ++V+K
Sbjct: 236 SLRPSDRLTCSLAQFCKLANVDLPYPAASRLQELLAVLLQMAGQLAWLQVLKLNKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + M R RDG
Sbjct: 296 H---IGDLLQHRHMLVRTAFRDG 315
>gi|123787727|sp|Q3UAW9.1|BRF2_MOUSE RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|74185449|dbj|BAE30195.1| unnamed protein product [Mus musculus]
Length = 420
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDLFSGTYMQMVKLLGLDVPSLCLADLVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ + D+M + +LL+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKDKMLSRTLLLVELADETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGK--DVTVKNVLK 279
+ ++ + K + + R +ELL L+++A L W + + ++V+K
Sbjct: 236 SLRPSDRLTCSLAQFCKLANVDLPYPAASRLQELLAVLLQMAGQLAWLQVLKLNKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + M R RDG
Sbjct: 296 H---IGDLLQHRHMLVRTAFRDG 315
>gi|392572943|gb|EIW66086.1| hypothetical protein TREMEDRAFT_35498, partial [Tremella
mesenterica DSM 1558]
Length = 731
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 8/200 (4%)
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-- 157
D F G ++ +C Y+ R+ + + + L +VYELG ++ L+L
Sbjct: 109 DNRFNRGRRIEYIVASCLYLQCRMKKDPHMLIDFSERLTINVYELGGTYLKLRSILSLTE 168
Query: 158 KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVV 217
+PEVD +++ N G + ++ K L+ A W +T GRRP +
Sbjct: 169 TMPEVD-PAIYNLRFANRLSFGAPAVVHAIAADASK---LIRRFAADW-MTQGRRPAGLC 223
Query: 218 VAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNV 277
A L+ ++ + VA+ V +T +R +E + + W +++T +++
Sbjct: 224 GACLIIAARMHDFLRTPDEVAQVVKVAPITIHRRLREFAQTSIAKKTVEEW-RNMTEEDL 282
Query: 278 LKNAPFVMNYMEMKSMEKRK 297
L + V ++ + + RK
Sbjct: 283 LHDTEDVPPVVKKQREQARK 302
>gi|307107018|gb|EFN55262.1| hypothetical protein CHLNCDRAFT_57908 [Chlorella variabilis]
Length = 861
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 104/273 (38%), Gaps = 45/273 (16%)
Query: 14 EDISGSLICVSCGVVQAFDNYDAQL-YGRDG------------PTGIYVHVGTAGTGSAL 60
+D +G CV CG V + A + + +D +G+ +G G
Sbjct: 16 DDANGFSCCVQCGRVLEDTAFSADITFQKDAGGESTVVGQFVNESGVARGIGRIHGGRVY 75
Query: 61 NYK--------EKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT-DGEFGLGDWFPI 111
Y+ ++ +E L+D+L+ + + SI+ + + K+ F G
Sbjct: 76 AYQADSHEKAQQRGRHEIAHLVDQLSVR---PREESIEAAHRLYKLALQRGFTRGRRTNQ 132
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL---------PEV 162
+ AC Y+V R D K + + + L +V+ LG + ++ + L L P +
Sbjct: 133 VAAACVYLVCRQDSKPFLLIDFSDALQINVFTLGAVFLQLAKLLRLTEHPMFAKPVDPSL 192
Query: 163 DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
I +R+ ++ N ++ M++ W + TGRRP + A +
Sbjct: 193 YIHRFADRLDFGRQMHAVANTALRLVASMKR----------DW-IQTGRRPSGICGAAIY 241
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++G + +V VH T KR E
Sbjct: 242 IAAHIHGFERSVRDVVAVVHIGEHTLSKRLYEF 274
>gi|393243240|gb|EJD50755.1| hypothetical protein AURDEDRAFT_182141 [Auricularia delicata
TFB-10046 SS5]
Length = 1042
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 18/267 (6%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-YGRDGP-----TGIYVHVGTAGT 56
C +C + + +G+ C CG+V + A++ +G G G YV G++G
Sbjct: 238 CKACSGSHIESDSATGTSFCADCGIVVEENAIVAEITFGETGSGAAMVQGAYVGAGSSGA 297
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF--GLGDWFP---- 110
+ + + ES + E + + ++++ +I + F LG F
Sbjct: 298 RMSGMHGRQVGGESREQTMENGRRRIMQVASAMRLPEIIGERAQRYFKLALGTGFVKGRK 357
Query: 111 --ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMF 168
++ C YV R S + + + +L +V+ LGR + N+ +++++
Sbjct: 358 SLYVVAVCLYVACRQRKTSHMLIDFSDMLQVNVFSLGRTYLDFINDCNISKQDLELIDPA 417
Query: 169 ERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
+ R + L F R+ V L+ ++ GRRP + A L+ +N
Sbjct: 418 TYIHRFASLLEFGE----ETSRVASDAVRLVRRFSTDWMVFGRRPSGICGAALLLAARMN 473
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ + + V T KR +E
Sbjct: 474 NFRRSVQEIIQVVKIADTTIMKRLEEF 500
>gi|261402160|ref|YP_003246384.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
gi|261369153|gb|ACX71902.1| Transcription factor TFIIB cyclin-releated protein
[Methanocaldococcus vulcanius M7]
Length = 666
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ A Y R + E+A D E+GR + LN+KL + + R
Sbjct: 523 VVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPIDYVPRF 582
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G + + + +L A + LT+GR P V A + L G
Sbjct: 583 ASELGLPG----------EVESKAIQILQQATEKGLTSGRGPTGVAAAAIYIASVLLGCR 632
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ T VT R RYKEL E L
Sbjct: 633 RTQREVAEVAGVTEVTIRNRYKELTEHL 660
>gi|301763709|ref|XP_002917271.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like
[Ailuropoda melanoleuca]
gi|281346891|gb|EFB22475.1| hypothetical protein PANDA_005481 [Ailuropoda melanoleuca]
Length = 422
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 99/206 (48%), Gaps = 20/206 (9%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C V R + L + V ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLVTCRQHNWPLTMGTVCTLLYADLDVFAGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ ++ + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKLLSRTLQLVELADETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAK-------EVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV--KN 276
S ++ ++A+ ++ C + R +ELL L+++A+ L W + + + ++
Sbjct: 236 SLQPSARLTCSLARFCKLADVDLPCPAPS---RLQELLAVLLQMAEQLAWLQVLGLDRRS 292
Query: 277 VLKNAPFVMNYMEMKSMEKRKEERDG 302
V+K+ + + ++ + RK RDG
Sbjct: 293 VVKH---IGDLLQHRRTLVRKAFRDG 315
>gi|75075209|sp|Q4R318.1|BRF2_MACFA RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|67972318|dbj|BAE02501.1| unnamed protein product [Macaca fascicularis]
Length = 373
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDMPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|325969253|ref|YP_004245445.1| transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
gi|323708456|gb|ADY01943.1| Transcription factor TFIIB cyclin-related protein [Vulcanisaeta
moutnovskia 768-28]
Length = 336
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 108/305 (35%), Gaps = 63/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS T + +G +IC CG V +AF + + R G G
Sbjct: 40 CPYCGSTTFIFDYENGQVICAKCGSVVLEHVIDLRPEWRAFTAEEKETRARAG--GPLNR 97
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRS---------------IQIKNMI 95
+ + + +++ K S K +D + KL++ R IQ N +
Sbjct: 98 LTSEALTTTIDWATKDA--SGKELD-IKRKLEILKYRKWQQRVRVQTSYERNIIQAMNEL 154
Query: 96 DKIT----------DGEFGL-----------GDWFPILIGACSYVVMRLDDKSLPISEVA 134
+I+ D G+ G ++ AC ++ R + E++
Sbjct: 155 SRISSQLGIPKACVDEAMGVYEQVLTKGLVRGRSVEAIVAACLHMACRKIGMPRSLDEIS 214
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+ R + L ++LP D R++ +L G + K+
Sbjct: 215 QYTRASRKEVARCFRLIARELGVRLPLSDPKLYVPRIVEQLKLSG----------EILKE 264
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+ +L A + LT G+ P + A + L G + VA T VT R RYKE
Sbjct: 265 ALNILEQAKRKGLTAGKDPAGLAAAAVYIASLLRGEVRTQKEVAMAAQVTEVTVRNRYKE 324
Query: 255 LLEAL 259
L L
Sbjct: 325 LAREL 329
>gi|448571794|ref|ZP_21639968.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
gi|445721761|gb|ELZ73427.1| transcription initiation factor TFB [Haloferax lucentense DSM
14919]
Length = 318
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 44/299 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 22 CPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKDEKSRVGAPTTNMM 81
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 82 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 138
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 139 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ E D I + V+R L+ E + D ++ LL A
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASELGLSDESERRARQLLKNAK 256
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262
+ + +G+ P+ + A + L V V++ + + VT R RY ELLEA +V
Sbjct: 257 EQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQV 315
>gi|126289989|ref|XP_001364012.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Monodelphis
domestica]
Length = 681
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 97/276 (35%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDG--- 43
C CG + + G +C CG V Q +N Q DG
Sbjct: 6 CRGCGGTDIELDPGRGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
P+ G +V++G L +++I+ L +L L N
Sbjct: 66 IPSVGGGFHVNLGKESRAQTLQNGKRQIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHMLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V + V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVIRVVKVCESTLRKRLTEF 267
>gi|312136694|ref|YP_004004031.1| transcription initiation factor iib (tfiib) [Methanothermus
fervidus DSM 2088]
gi|311224413|gb|ADP77269.1| Transcription initiation factor IIB (TFIIB) [Methanothermus
fervidus DSM 2088]
Length = 307
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 105/306 (34%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + ++C CG+V +AFD+ + R G Y
Sbjct: 11 CPECGSEDLIEDHERAEIVCRKCGLVIDEKLIDMGPEWRAFDHEQREKRTRVGAPVTYT- 69
Query: 51 VGTAGTGSALNYKEKKIY-------------------------------------ESNKL 73
+ G + ++++ K IY E +++
Sbjct: 70 IHDKGLSTMIDWRNKDIYGKDIPAKSRAQWYRLRKWQRKIRISGATERNLAFALSELDRI 129
Query: 74 IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEV 133
L + S+ ++ + K + G ++ A Y R + + E+
Sbjct: 130 ASRLNLPRTVRETASVIYRDAVKK----KLIRGRSIEEVVAAALYAACRKCNVPRTLDEI 185
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A V +GR + LN++LP + R L G +++
Sbjct: 186 AEVSGVKKKGVGRTYRFLARKLNIRLPPTSPIDYVPRFASELGLSG----------KVQS 235
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ + ++ A+K LT+GR P V A L L +A+ T VT R RY+
Sbjct: 236 KAIEIIKKAMKKGLTSGRGPTGVAAAALYIASVLLRERRTQREIAEVAGITEVTIRNRYR 295
Query: 254 ELLEAL 259
EL L
Sbjct: 296 ELTSKL 301
>gi|17564892|ref|NP_503146.1| Protein TTB-1 [Caenorhabditis elegans]
gi|21362986|sp|O16991.2|TF2B_CAEEL RecName: Full=Transcription initiation factor IIB; AltName:
Full=General transcription factor TFIIB
gi|351051072|emb|CCD74279.1| Protein TTB-1 [Caenorhabditis elegans]
Length = 306
Score = 45.1 bits (105), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 100/274 (36%), Gaps = 47/274 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNY-------------DAQLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDG 101
G + + ++L N ++++ + LI E++ ++ L R+IQ + + +
Sbjct: 81 GGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLP--RNIQDSASRIFKDVLES 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
+ G AC Y+ R D E+ +V E+GR +V L L +
Sbjct: 139 KALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSLETNLEQ 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N S+ + ++ + CAV L GR P+ + A +
Sbjct: 199 ITSADFMSRFCGN----------LSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + + + +T R+ YK L
Sbjct: 249 YMASQASAEKRSAKEIGDVAGAAEITVRQTYKLL 282
>gi|374630349|ref|ZP_09702734.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
gi|373908462|gb|EHQ36566.1| Transcription initiation factor IIB (TFIIB) [Methanoplanus limicola
DSM 2279]
Length = 335
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L ++ L C +CG+V +AFD+ R G P +
Sbjct: 39 CPECGSRQLVQDYERAELTCQNCGLVLEEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 98
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 99 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 152
Query: 107 DW--------FPILIGACSYVVMR-------LDDKSL-------------------PISE 132
+ P + + VV R + +S+ + E
Sbjct: 153 ELDRMASALGLPRNVRETAAVVYRDAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 212
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 213 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 262
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 263 SRAVEILRQAGEKELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 322
Query: 253 KELLEAL 259
KEL E L
Sbjct: 323 KELAEKL 329
>gi|383419707|gb|AFH33067.1| transcription factor IIIB 50 kDa subunit [Macaca mulatta]
Length = 419
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|448586312|ref|ZP_21648386.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445724967|gb|ELZ76593.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 318
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 44/301 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C C S++L + G +C CG+V +AF++ + R G PT
Sbjct: 20 LSCPECDSESLVADSEHGETVCEDCGLVVEENEIDHGPEWRAFNSSEKDQKSRVGAPTTN 79
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +
Sbjct: 80 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGE 136
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMIT---RVV 152
I LG P + + V+ R LDD LP + V +Y RM +
Sbjct: 137 IDRMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMADTPRSLD 194
Query: 153 EFLNLKLPEVD-IVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNC 201
E ++ E D I + V+R +L+ E + D ++ LL
Sbjct: 195 EITSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDESERRARQLLKN 254
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + + +G+ P+ + A + L V V++ + + VT R RY ELLEA +
Sbjct: 255 AKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEQ 314
Query: 262 V 262
V
Sbjct: 315 V 315
>gi|355697866|gb|EHH28414.1| Transcription factor IIIB 50 kDa subunit [Macaca mulatta]
gi|355779628|gb|EHH64104.1| Transcription factor IIIB 50 kDa subunit [Macaca fascicularis]
Length = 419
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|417400573|gb|JAA47217.1| Putative transcription factor iiib 50 kda subunit [Desmodus
rotundus]
Length = 417
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLEMFSGTYMQIVKLLGLDVPSLCLTDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R R+ L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFQVSPSVPAKYVEDKEKMLSRTRQ----LVELADETWLVTGRHPLPVITAAAF 231
Query: 223 FVVELNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPW 268
+ + ++ ++A+ V R +ELL L+++A+ L W
Sbjct: 232 LAWQSLQPAARLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|619493|emb|CAA87399.1| TFIIB related subunit of TFIIIB (BRF1) [Kluyveromyces lactis]
Length = 556
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 57/286 (19%)
Query: 3 CTSCGSKTLTREDISGS---LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG------- 52
C +CGS R DIS + LIC CG+V ++ ++L + G V G
Sbjct: 12 CKNCGSTDFVR-DISNTTNELICKVCGLVTEENSIVSELAFGEASNGAAVIQGAFVSANQ 70
Query: 53 ------TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ +AL +E + + + + +++ L N+ + +TD F
Sbjct: 71 AHPTFMSHSGQNALMSRETTLNNARRKLKAVSYAL-----------NIPEYVTDAAF--- 116
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I AC Y+ R + + + +S L VY +G ++
Sbjct: 117 QWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLA 176
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR--KQGVLLLNCAVKWFLTT 209
+ L + KLP D S+F +Q F E +++ + V L + ++
Sbjct: 177 KKLQIVKLPLAD-PSLF--------IQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYE 227
Query: 210 GRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A L+ +N + + H T ++R E
Sbjct: 228 GRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLNEF 273
>gi|59858161|gb|AAX08915.1| RNA polymerase III transcription initiation factor BRF2 [Bos
taurus]
Length = 421
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVELNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ S ++ ++A+ V R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLQPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|109086155|ref|XP_001089435.1| PREDICTED: transcription factor IIIB 50 kDa subunit isoform 1
[Macaca mulatta]
Length = 373
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|380814364|gb|AFE79056.1| transcription factor IIIB 50 kDa subunit [Macaca mulatta]
Length = 419
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|15668963|ref|NP_247767.1| transcription initiation factor IIB [Methanocaldococcus jannaschii
DSM 2661]
gi|2833587|sp|Q58192.1|TF2B_METJA RecName: Full=Transcription initiation factor IIB; Short=TFIIB;
Contains: RecName: Full=Endonuclease Mja Tfb; AltName:
Full=Mja TFIIB intein; AltName: Full=Mja Tfb intein
gi|1591481|gb|AAB98771.1| transcription initiation factor IIB (TFIIB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 673
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ A Y R + E+A D E+GR + LN+KL + + R
Sbjct: 530 VVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPIDYVPRF 589
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G + + + +L A + LT+GR P V A + L G
Sbjct: 590 ASELGLPG----------EVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCR 639
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ T VT R RYKEL E L
Sbjct: 640 RTQREVAEVAGVTEVTIRNRYKELTEHL 667
>gi|298675089|ref|YP_003726839.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298288077|gb|ADI74043.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 113/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L ++ L+C CG+V +AFD+ R G Y
Sbjct: 45 CPECGSINLEQDYERAELVCSDCGLVVDAELVDEGPEWRAFDSDQQMKRSRVGAPMTYA- 103
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I+I N ++ + F L +
Sbjct: 104 IHDKGLSTMIDWRNRDSYGQSISSKNRAQL-YRLR-KWQRRIRIYNAAER--NLAFALSE 159
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 160 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 219
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R +L+ ++
Sbjct: 220 GEVSRVSRIEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLKLKS----------EVQS 269
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+GV +L A + +T+GR P V A + L G VA T VT R RYK
Sbjct: 270 KGVEILRQASEKEITSGRGPTGVAAAAIYIASMLCGERRTQREVADVAGVTEVTIRNRYK 329
Query: 254 ELLEAL 259
EL E L
Sbjct: 330 ELSEEL 335
>gi|59857667|gb|AAX08668.1| RNA polymerase III transcription initiation factor BRF2 [Bos
taurus]
Length = 421
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVELNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ S ++ ++A+ V R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLQPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|402877997|ref|XP_003902693.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Papio anubis]
Length = 419
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLQMAEQLAW 282
>gi|444316962|ref|XP_004179138.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
gi|387512178|emb|CCH59619.1| hypothetical protein TBLA_0B08030 [Tetrapisispora blattae CBS 6284]
Length = 549
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 54/282 (19%)
Query: 3 CTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQL-YGRDGPTGIYVHVG------T 53
C C S R+ + + L+CV CGVV + +++ +G VH
Sbjct: 5 CGKCKSTEFVRDHANANNDLVCVGCGVVFEDNPIVSEVTFGESAAGAAVVHGSFVRADQA 64
Query: 54 AGTG-SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPI- 111
A TG AL +E + + + I + L + + +TD F W+ +
Sbjct: 65 ASTGRGALASRETTLLHARRRIRAVAHALAIP-----------EHVTDAAF---QWYKLA 110
Query: 112 -------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN-- 156
++ AC YV R + + + ++ L VY +G ++V L+
Sbjct: 111 LAHGFVRGRRAQNVVAACLYVACRKERTPHMLVDFSARLQVSVYAVGATFLQLVRKLHVQ 170
Query: 157 ---LKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRP 213
L P + I ER+ SR R+ + V L + + GRRP
Sbjct: 171 DLPLADPSIFIQHFTERLALGSRQV-----------RVARDAVRLAQRMARDGMQDGRRP 219
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
V A ++ +N + +A H T ++R E
Sbjct: 220 AGVAGACVLLACRMNNLRRTHAEIAAVSHVAEETLQQRLGEF 261
>gi|326681388|ref|XP_003201813.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Danio
rerio]
Length = 251
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPV-VVAVLVFVVELNGVS---------VKIENVAK 239
R+ Q LL A ++ TGRRP P+ + AV V LN ++ KI +
Sbjct: 23 RLVDQTSALLELAADTWILTGRRPFPLFLAAVYVAWQSLNPLARMKYSLMKFCKIAKAPE 82
Query: 240 EVHC-TVVTCRKRYKELLEALVKVAQALPWGKDVT---------VKNVLKNAPFVMNYME 289
++ C + T KR ELLE L K+ + LPW + V+++LK+ ++ +
Sbjct: 83 QLWCKSKDTINKRLNELLEVLCKLGRELPWVRPTDIQMNTVTTLVEDILKHRKALL-ILA 141
Query: 290 MKSMEKRKEERDGLNCGGIDLGDVVS 315
+K EK+ EE +L D S
Sbjct: 142 VKHYEKQLEETQTSQYSESELSDSKS 167
>gi|426256390|ref|XP_004021823.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Ovis aries]
Length = 421
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ + ++ + K + + R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|62751583|ref|NP_001015582.1| transcription factor IIIB 50 kDa subunit [Bos taurus]
gi|59857927|gb|AAX08798.1| RNA polymerase III transcription initiation factor BRF2 [Bos
taurus]
gi|59858117|gb|AAX08893.1| RNA polymerase III transcription initiation factor BRF2 [Bos
taurus]
gi|59858133|gb|AAX08901.1| RNA polymerase III transcription initiation factor BRF2 [Bos
taurus]
Length = 421
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ + ++ + K + + R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|122142741|sp|Q29S07.1|BRF2_BOVIN RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|88758699|gb|AAI13271.1| Zinc finger protein 36, C3H type-like 2 [Bos taurus]
gi|296472324|tpg|DAA14439.1| TPA: transcription factor IIIB 50 kDa subunit [Bos taurus]
Length = 421
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ + ++ + K + + R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|347971505|ref|XP_313145.5| AGAP004233-PA [Anopheles gambiae str. PEST]
gi|333468699|gb|EAA08645.5| AGAP004233-PA [Anopheles gambiae str. PEST]
Length = 688
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 36/277 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGTAG 55
C +CGS + ++ G +C +CG V DN ++ +G G +V +
Sbjct: 7 CNNCGSADIEVDNARGDAVCTNCGSVLE-DNIIVSEVQFEENAHGAASAVGQFV--ASDS 63
Query: 56 TGSALNY-----------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFG 104
G A Y +E + ++ + I L +L L N
Sbjct: 64 RGGATQYGKFQVSTGTESREVTLRKARQGITHLCSQLRLNNHCIETACNFFKMALIRNLT 123
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD- 163
G + AC Y+ R + S + +++ VL YELGR ++ + L L +P +D
Sbjct: 124 RGRRNTHIYAACVYITCRTEGTSHLLIDISDVLQICCYELGRTYLKLSQSLCLNIPSIDP 183
Query: 164 ---IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
I+ ++ + + + ++ RM+K + +GRRP + A
Sbjct: 184 CIYIMRYANKLEFKEKTHEVSMTAQRLVQRMKKDSI-----------HSGRRPSGLCGAA 232
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
L+ ++ S ++ + V T RKR E E
Sbjct: 233 LLLAARMHDFSRTPNDIVRIVKIHESTLRKRLFEFGE 269
>gi|448665373|ref|ZP_21684648.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445773054|gb|EMA24088.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 339
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 55/304 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +T +D G +C SCG+V +AFD+ + R G PT
Sbjct: 30 CPDCGGSLVT-DDSRGETVCESCGLVVDEDEIDHGPEWRAFDSQERDNKRRVGAPTTEMK 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + DE D + Q ID++
Sbjct: 89 HDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDRMG 148
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
+ G+ G + A Y +R + + ++A V
Sbjct: 149 SALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMAVVSR 208
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
D E R + L+L++ D + + I + LD D + +Q L
Sbjct: 209 VDEMEFTRAYRYLNRELSLQVGPPDPATYLSKFI--------SELDAD--DALERQARAL 258
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ + + +G+ P+ + A + L G + E V++ + VT R+RY+ELLEA
Sbjct: 259 IEAGKEANVHSGKSPVGLAAAAIYAAGLLLGEEMTQETVSEATDISTVTIRERYRELLEA 318
Query: 259 LVKV 262
++
Sbjct: 319 EAEL 322
>gi|336477091|ref|YP_004616232.1| transcription factor TFIIB cyclin [Methanosalsum zhilinae DSM 4017]
gi|335930472|gb|AEH61013.1| Transcription factor TFIIB cyclin-related protein [Methanosalsum
zhilinae DSM 4017]
Length = 337
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 113/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLEHDYERAELVCADCGLVVDAEFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRL-RKWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R +L+G ++
Sbjct: 216 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLQLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|444511198|gb|ELV09836.1| Rab11 family-interacting protein 1 [Tupaia chinensis]
Length = 1069
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 772 VLVGCCVLITCRQHNWPLTMGTICTLLYADLEVFSGTYMQMVKLLGLDVPTLCLADLVKT 831
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ RL Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 832 YCSSFRLFQASPSVPAKYVEDKEKMVSRTLQLVELASETWLVTGRHPLPVITAAAFLAWQ 891
Query: 227 LNGVSV----------KIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPW 268
S K+ NV ++ C + R +ELL L+++A L W
Sbjct: 892 SLRPSAPLPCSLARFCKLANV--DLPCPAAS---RLQELLAVLLRMAAQLAW 938
>gi|403294366|ref|XP_003938161.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 419
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLSLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELASETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPW 268
+ ++ ++A+ V R +ELL L+++A+ L W
Sbjct: 236 SLQPAYRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEHLAW 282
>gi|308507101|ref|XP_003115733.1| CRE-TTB-1 protein [Caenorhabditis remanei]
gi|308256268|gb|EFP00221.1| CRE-TTB-1 protein [Caenorhabditis remanei]
Length = 306
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 105/286 (36%), Gaps = 50/286 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNY-------------DAQLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDG 101
G + + ++L N ++++ + LI E++ ++ L R+IQ + + D
Sbjct: 81 GGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLP--RNIQENASRIFKDVLDS 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
G AC Y+ R D E+ +V E+GR ++ L L +
Sbjct: 139 RALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIIRNLETNLEQ 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N L N ++ R+ K+ AV L GR P+ + A +
Sbjct: 199 ITSADFMSRFCGNLYL---PNSIQAAATRIAKR-------AVDMDLVAGRTPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP 267
+ +G + + +T R+ YK L K A+ P
Sbjct: 249 YMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYP---KAAELFP 291
>gi|116753584|ref|YP_842702.1| transcription initiation factor IIB [Methanosaeta thermophila PT]
gi|121694369|sp|A0B5T8.1|TF2B_METTP RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|116665035|gb|ABK14062.1| Transcription initiation factor IIB (TFIIB) [Methanosaeta
thermophila PT]
Length = 337
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L R+ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ D
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKTISSKNRAQL-YRLR-KWQRRIRVSNATERNLAFALSELD 157
Query: 108 WFPILIG-------ACSYVVMRLDDKSL-------------------------PISEVAS 135
+G + + R +K+L + E+A
Sbjct: 158 RMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+GR V L+LKL + R L+G ++ +G
Sbjct: 218 VSRVSRKEIGRTYRFVSRELSLKLMPTSPIDYIPRFCSGLNLKGD----------VQAKG 267
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L VA T VT R RYKEL
Sbjct: 268 IEILRQAAEKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYKEL 327
Query: 256 LEAL 259
E L
Sbjct: 328 AEEL 331
>gi|118401704|ref|XP_001033172.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila]
gi|89287519|gb|EAR85509.1| Transcription factor TFIIB repeat family protein [Tetrahymena
thermophila SB210]
Length = 582
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 114 GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL------KLPEVDIVSM 167
A Y+ +R + + + L ++++L R ++ +FLN+ +LP +D S+
Sbjct: 127 AAALYIALRFQKAPFLLMDFSEKLCINLFKLARCYRKLAKFLNVTLKLNERLPSID-PSI 185
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
+ + R ++ F + +D++++ + LL +++ GRRP + A ++ +
Sbjct: 186 Y--IPRFCKMLEFND----KVDQVKETAIKLLKRMKLDWMSHGRRPSSLCGAAILIAARM 239
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEALV 260
+G V K V+ T RKR +E E V
Sbjct: 240 HGFKRTTSEVCKVVYVCEETLRKRLEEFKETDV 272
>gi|440897044|gb|ELR48817.1| Transcription factor IIIB 50 kDa subunit [Bos grunniens mutus]
Length = 421
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ + ++ + K + + R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>gi|268565685|ref|XP_002647378.1| C. briggsae CBR-TTB-1 protein [Caenorhabditis briggsae]
Length = 306
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 105/286 (36%), Gaps = 50/286 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNY-------------DAQLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLTGGDLSTTIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDG 101
G + + ++L N ++++ + LI E++ ++ L R+IQ + + D
Sbjct: 81 GGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLP--RNIQDNASRIFKDVLDS 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
G AC Y+ R D E+ +V E+GR ++ L L +
Sbjct: 139 RALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIIRNLETNLEQ 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N L N ++ R+ K+ AV L GR P+ + A +
Sbjct: 199 ITSADFMSRFCGNLYL---PNSIQAAATRIAKR-------AVDMDLVAGRTPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP 267
+ +G + + +T R+ YK L K A+ P
Sbjct: 249 YMASQASGEKRSAKEIGDVAGAAEITVRQTYKLLYP---KAAELFP 291
>gi|449436026|ref|XP_004135795.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 643
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 15/264 (5%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C++C D +G L C CG V N+ + G G NY
Sbjct: 4 CSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQSNY 63
Query: 63 KEKKIYESNKLIDELTF---KLDL-TGQRSIQIKNMIDKIT-DGEFGLGDWFPILIGACS 117
+ NK +++ + L++ I++ +I + F G + AC
Sbjct: 64 SASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACL 123
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV------SMFERV 171
Y+ R +K + + ++ L +VY LG + ++ + L +L E IV S+F
Sbjct: 124 YIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVL--RLEEHPIVQKPVDPSLFIDK 181
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G D+ M + K + ++ + ++ TGR+P + A L NGV
Sbjct: 182 FTQCLLGGTK--DDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVK 239
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ K VH T KR E
Sbjct: 240 CTKSDIIKIVHICDATLTKRLIEF 263
>gi|71153596|sp|Q8CFK2.1|TF3B_MOUSE RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=mTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1
gi|23512360|gb|AAH37224.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 94/276 (34%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDG--- 43
C CG + + G +C CG V Q +N Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGSQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|327259002|ref|XP_003214327.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Anolis
carolinensis]
Length = 672
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 24/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN---YDAQLY----GRDGPTGIYVHVGTAG 55
C CG + + G +C CG V DN + Q G G +V + AG
Sbjct: 7 CAVCGGCEIEVDSARGDAVCTGCGSVLE-DNIIVSEVQFVENSGGGSSAVGQFVSLDAAG 65
Query: 56 TGSALN---------YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ + + + + I L +L L N G
Sbjct: 66 KTQTVGGFHVNLGKESRAQTLQNGKRQIHHLGNQLQLNQHCLDTAFNFFKMAVSKHLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 126 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R G N + SM + LL + ++ TGRRP + A L+
Sbjct: 186 YIPRFAHMLEF-GTKNHEVSMT------ALRLLQQMKRDWMHTGRRPSGLCGAALLVAAR 238
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ ++ V + V T RKR E
Sbjct: 239 MHDFRRTVKEVIRVVKVGESTLRKRLTEF 267
>gi|281205803|gb|EFA79992.1| hypothetical protein PPL_06813 [Polysphondylium pallidum PN500]
Length = 678
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 121/306 (39%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGV----------------VQAFDNYDA-QLYGRDGPT 45
CTSCGS L E G+L+C CG + A N + RD +
Sbjct: 5 CTSCGSSEL--ESAEGTLVCTQCGTILNEVKLVFEEETSVKIDAISNSKSISNKKRDSSS 62
Query: 46 GIYVHVGTAG--TGSALNYKEKKIYESNKLIDELTFKLDLTG--QRSIQIKNMIDKITDG 101
+ + T+ T + LN + +KL T K ++ G +++++ I K
Sbjct: 63 VLRRYTSTSDVITTNLLNSID---ITCDKLKLSSTLKNEMIGFYNNVLRVRSSIKK---- 115
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
++ G +Y+ ++ + K L + +++ + D+ +L + RV+
Sbjct: 116 -----HRADLIAGGLAYISIKHNKKPLSLMDISPM---DMSDLSTFVDRVLSHYK----- 162
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
T D + +RK V L+N A K + GR P +VVA +
Sbjct: 163 -------------------TQFDNEDMRFLRKLTVELINYADKNQIVDGRAPNNIVVACV 203
Query: 222 VFVVEL-NGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPW-GKDVTVKNVLK 279
++ G ++ ++ + ++ RYKEL LV ++ + GK +T KN +
Sbjct: 204 YMSMQAKTGALPDLKKISSVLSTSIKCITDRYKELKRQLVTYSKKSAFLGKLITEKNFHQ 263
Query: 280 NAPFVM 285
P ++
Sbjct: 264 YIPIIL 269
>gi|449485890|ref|XP_004157302.1| PREDICTED: transcription factor IIIB 60 kDa subunit-like [Cucumis
sativus]
Length = 663
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 15/264 (5%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C++C D +G L C CG V N+ + G G NY
Sbjct: 4 CSNCVKNVAGSRDEAGFLYCDMCGKVLDSYNFSQEPTFTKDSGGQSQLSGNFVRSIQSNY 63
Query: 63 KEKKIYESNKLIDELTF---KLDL-TGQRSIQIKNMIDKIT-DGEFGLGDWFPILIGACS 117
+ NK +++ + L++ I++ +I + F G + AC
Sbjct: 64 SASRERTLNKAFEDMRYMRNGLNMGESDEIIRVAGAFYRIALERNFTRGRNAEFVQAACL 123
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV------SMFERV 171
Y+ R +K + + ++ L +VY LG + ++ + L +L E IV S+F
Sbjct: 124 YIACREKNKPYLLIDFSNYLRINVYVLGAVFLQLCKVL--RLEEHPIVQKPVDPSLFIDK 181
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G D+ M + K + ++ + ++ TGR+P + A L NGV
Sbjct: 182 FTQCLLGGTK--DDGMKKEVSKTALKIITSMKRDWMQTGRKPSGLCGAALYISALSNGVK 239
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ K VH T KR E
Sbjct: 240 CTKSDIIKIVHICDATLTKRLIEF 263
>gi|70608137|ref|NP_082469.2| transcription factor IIIB 90 kDa subunit [Mus musculus]
gi|148686622|gb|EDL18569.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae) [Mus musculus]
Length = 676
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 94/276 (34%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDG--- 43
C CG + + G +C CG V Q +N Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGSQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|257388038|ref|YP_003177811.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257170345|gb|ACV48104.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 322
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 69/311 (22%), Positives = 124/311 (39%), Gaps = 65/311 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG L + G +C CG+V +AFD + R G PT
Sbjct: 27 CPECGGD-LVADSERGETVCEDCGLVVEEDEIDPGPEWRAFDASEKDEKSRVGAPTTNMM 85
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 86 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 142
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 143 RMASALG--LPENVRETASVIYRRALDEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 200
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V + E+ R VV L L++ D S R ++LD + D + +
Sbjct: 201 SAVSRVEKDEIARTYRYVVRELGLEIQPADPESYVPRFA--------SDLD--LSDEVER 250
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 251 RARQLLQNAKQQGVHSGKSPVGLAAAGVYAASLLTNEKVTQSEVSEVANISEVTIRNRYH 310
Query: 254 ELLEALVKVAQ 264
ELLEA +V Q
Sbjct: 311 ELLEAEEEVQQ 321
>gi|325090389|gb|EGC43699.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H88]
Length = 837
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G V GT AG
Sbjct: 55 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQSY 112
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 113 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 171
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 172 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 231
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 232 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 284
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N I V V T +T +R E
Sbjct: 285 ALILAARMNNFRRTIREVVYVVKVTELTIHQRLNEF 320
>gi|14590724|ref|NP_142794.1| transcription initiation factor IIB [Pyrococcus horikoshii OT3]
gi|3257275|dbj|BAA29958.1| 208aa long hypothetical transcription initiation factor IIB
[Pyrococcus horikoshii OT3]
Length = 208
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G + AC Y+ RL + E+A V D + R+ VV+ L L ++ I
Sbjct: 59 GRSIESVAAACIYISCRLYKVPRTLDEIAKVAKEDKKVIARVYRLVVKKLGLSSKDMLIR 118
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+ + F + + + +R++++ + LLN A +T+G+ P+ + ++L
Sbjct: 119 PEYY-------IDKFAD-ELEVSERVKRRALRLLNEAKDKGITSGKNPLGLAASILYIAS 170
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G + +A+ T VT R RYKEL++ L
Sbjct: 171 LLEGERRTQKEIARVAGITEVTIRNRYKELVKEL 204
>gi|448419967|ref|ZP_21580777.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445674135|gb|ELZ26680.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 348
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 111/304 (36%), Gaps = 62/304 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L ++ G +C +CG+V +AFD+ + R G PT +
Sbjct: 43 CPECGSTDLATDEGRGETVCENCGLVVDEDAVDRGPEWRAFDSKEKDQKSRVGAPTTNMM 102
Query: 50 HVGTAGTGSALNYKEKKIY----ESN-----KLIDELTFKLDLTGQRSIQIKNMIDKITD 100
H G + + +++K Y SN K + + + +K + +I
Sbjct: 103 H--DKGLSTNIGWQDKDAYGNSLSSNQRQKMKRLRTWNERFRTRDSKERNLKQALGEIDR 160
Query: 101 GEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEVA 134
LG P + S V+ R L+D LP + EVA
Sbjct: 161 MASALG--LPDNVRETSSVIYRRALEDDLLPGRSIEGIATASLHAAARMAQVPRSLDEVA 218
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
V D E R +V L+L++ D V R + + T +
Sbjct: 219 RVSRVDEDEFERAYRYIVRELSLEIKPADPVEYLPRFASDVEVPKETE----------RT 268
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
LL A + + +G+ P+ + A L +L V V+ + VT R RY+E
Sbjct: 269 ARELLENAKRENVHSGKSPVGLAAAALYAAAQLTNEDVTQHQVSGVTDISEVTIRNRYQE 328
Query: 255 LLEA 258
LLEA
Sbjct: 329 LLEA 332
>gi|257051641|ref|YP_003129474.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
gi|256690404|gb|ACV10741.1| Transcription factor TFIIB cyclin-related [Halorhabdus utahensis
DSM 12940]
Length = 330
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 126/307 (41%), Gaps = 69/307 (22%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +T + G +C CG+V +AFD + R G PT
Sbjct: 33 CPECGGGLVT-DSERGETVCGECGLVVEEDEIDPGPEWRAFDAAEKDQKSRVGAPTTNMM 91
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 92 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 150
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVY-------------- 142
LG P + + V+ R LD+ LP + V +Y
Sbjct: 151 ASA---LG--LPENVRETASVIYRRALDENLLPGRSIEGVATASLYAAARQAGNPRSLDE 205
Query: 143 -----ELGRM-ITR----VVEFLNLKLPEVDIVSMFERVIRNSRL-QGFTNLDESMLDRM 191
+GRM +TR VV LNL++ D S R + + L + + ++D
Sbjct: 206 IERVSRIGRMELTRTYRYVVRELNLEVQPADPESYVPRFVSDLELNEEVSRRARELVDSA 265
Query: 192 RKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
RK+GVL +G+ P+ + A + L+ V +++ + VT R R
Sbjct: 266 RKEGVL-----------SGKSPVGIAAAAIYAAALLSNERVTQGEISEVADISEVTIRNR 314
Query: 252 YKELLEA 258
YKELLEA
Sbjct: 315 YKELLEA 321
>gi|448613121|ref|ZP_21663001.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445740018|gb|ELZ91524.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 345
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 120/297 (40%), Gaps = 44/297 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C CGS+ L + G +C CG+V +AF++ + R G PT
Sbjct: 47 LSCPECGSEALVSDSEHGETVCDECGLVVEENEIDRGPEWRAFNSSEKDQKSRVGAPTTN 106
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +
Sbjct: 107 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGE 163
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVV 152
I LG P + + V+ R L+D LP + V +Y RM +
Sbjct: 164 IDRMASALG--LPENVRETTSVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLD 221
Query: 153 EFLNLKLPEVD-IVSMFERVIRNSRLQGFTNLDESMLDRM----------RKQGVLLLNC 201
E ++ E D I + V+R +L+ E + R ++ LL
Sbjct: 222 EITSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGISDESERRARQLLKN 281
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
A + + +G+ P+ + A + L V V+ + + VT R RY ELLEA
Sbjct: 282 AKEQGVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSDVANISEVTIRNRYHELLEA 338
>gi|67078472|ref|NP_001019944.1| transcription factor IIIB 50 kDa subunit [Rattus norvegicus]
gi|81908686|sp|Q4V8D6.1|BRF2_RAT RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|66911070|gb|AAH97435.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Rattus norvegicus]
gi|149057849|gb|EDM09092.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Rattus norvegicus]
Length = 416
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+++G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VVVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLADLVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ + D+M + +LL+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSMPAKYVEDKDKMLSRTLLLVELANETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ ++ + K + + R +ELL L+++A L W
Sbjct: 236 SLRPSDRLTCSLARFCKLANVDLPYPAASRLQELLAVLLQMASQLAW 282
>gi|323333395|gb|EGA74791.1| Brf1p [Saccharomyces cerevisiae AWRI796]
Length = 404
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L + + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYALHIP-----------EYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|323304747|gb|EGA58507.1| Brf1p [Saccharomyces cerevisiae FostersB]
Length = 523
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|124486326|ref|YP_001030942.1| transcription initiation factor IIB [Methanocorpusculum labreanum
Z]
gi|124363867|gb|ABN07675.1| Transcription initiation factor IIB (TFIIB) [Methanocorpusculum
labreanum Z]
Length = 340
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 113/307 (36%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGSK L + L+C CG+V +AFD+ R G P +
Sbjct: 44 CPECGSKQLVHDYERAELVCQHCGLVLDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 103
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 104 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 157
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 158 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDE 217
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL R L+G ++
Sbjct: 218 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPGDYVPRFCSGLGLKG----------EVQ 267
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ + +L A + LT+GR P V A + L+G VA T VT R RY
Sbjct: 268 SRAMEILKQAGERELTSGRGPTGVAAAAIYISSILSGERRTQREVADVAGVTEVTIRNRY 327
Query: 253 KELLEAL 259
KEL E L
Sbjct: 328 KELAEQL 334
>gi|115530760|emb|CAL49303.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 461
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 96/274 (35%), Gaps = 33/274 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CG + + G +C CG V + +++ +G GI VG
Sbjct: 6 CKNCGCTDIDVDAARGDAVCTGCGSVLEDNIIVSEVQFVEGAGGISSAVGQFVSSECSGK 65
Query: 53 TAGTGSAL------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
T G + + + + I L +L L N G
Sbjct: 66 TPSLGEGFYTSVGKESRAQTLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 126 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESM-----LDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
R G N + SM + RM++ W + TGRRP + A L
Sbjct: 186 YIPRFAHLLEF-GDKNHEVSMTALRLVQRMKRD----------W-MHTGRRPSGLCGAAL 233
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ ++ I+ V + V T RKR E
Sbjct: 234 LVASRMHDFRRTIKEVIRVVKVCESTLRKRLTEF 267
>gi|55376957|ref|YP_134807.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448634689|ref|ZP_21675087.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|448640892|ref|ZP_21677679.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448651198|ref|ZP_21680267.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448678748|ref|ZP_21689755.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448689160|ref|ZP_21694897.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229682|gb|AAV45101.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445749662|gb|EMA01107.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445761417|gb|EMA12665.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445770725|gb|EMA21783.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445772735|gb|EMA23780.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779030|gb|EMA29972.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 319
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 112/304 (36%), Gaps = 61/304 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S++++ D G L+C CG+V +AF++ + Q R G PT +
Sbjct: 27 CPECESESIS-SDGGGELVCEDCGLVIEDENIDRGPEWRAFNHSERQSKSRVGAPTTQTM 85
Query: 50 HVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMIDK 97
H G + +++K+K Y E + L + G+R++Q + ID+
Sbjct: 86 H--DKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 98 ITDG---------------------EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ + G + AC Y R + + EV+ V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL-QGFTNLDESMLDRMRKQG 195
+ E+GR V + L LK+ VD R L + + ++D +QG
Sbjct: 204 SRVEQKEIGRTYRYVAQELELKMEPVDPKQYVPRFASELELSEEVQSKANEIIDTTAEQG 263
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+L +G+ P A + L VA T VT R RY+E
Sbjct: 264 LL-----------SGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQ 312
Query: 256 LEAL 259
+EA+
Sbjct: 313 IEAM 316
>gi|50287787|ref|XP_446323.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525630|emb|CAG59247.1| unnamed protein product [Candida glabrata]
Length = 598
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 33/273 (12%)
Query: 3 CTSCGSKTLTREDIS--GSLICVSCGVVQAFD------NYDAQLYGRDGPTGIYVHVGTA 54
C +CG+ L + + L+CV+CGVV + + G TG ++ G +
Sbjct: 5 CKNCGNTELVVDSSTPNNDLVCVACGVVSEENPIVSEVTFAETSSGAATVTGSFLSAGQS 64
Query: 55 GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPIL-- 112
T L + E+ ++ KL G ++ I + I + + + L + +
Sbjct: 65 HTSGGLGSNAMESREAT--LNNAKKKLRAVGH-ALNIPDYIVEASHQWYKLALAYNFVQG 121
Query: 113 ------IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIV 165
I AC Y+ R + + + +S L VY +G ++V+ L + KLP D
Sbjct: 122 RRSQNVIAACLYIACRKEMTHHMLIDFSSRLQVSVYSIGATFLKMVKRLQITKLPLAD-P 180
Query: 166 SMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
S+F +Q F L E + +R L + W GRRP + A ++
Sbjct: 181 SLF--------IQHFAEKLELGEKKIKVVRDAVKLAQRMSNDWMF-EGRRPAGIAGACIL 231
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + + H T ++R E
Sbjct: 232 LACRMNNLRRTHSEIVAVSHVAEETLQQRLNEF 264
>gi|240278695|gb|EER42201.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus H143]
Length = 774
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G V GT AG
Sbjct: 55 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQSY 112
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 113 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 171
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 172 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 231
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 232 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 284
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N I V V T +T +R E
Sbjct: 285 ALILAARMNNFRRTIREVVYVVKVTELTIHQRLNEF 320
>gi|349578449|dbj|GAA23615.1| K7_Brf1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 596
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|298674300|ref|YP_003726050.1| transcription factor tFIIB cyclin-like protein [Methanohalobium
evestigatum Z-7303]
gi|298287288|gb|ADI73254.1| Transcription factor TFIIB cyclin-related protein [Methanohalobium
evestigatum Z-7303]
Length = 341
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 114/306 (37%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L ++ L+C CG+V +AFD+ R G Y
Sbjct: 45 CPECGSINLEQDYERAELVCSDCGLVVDAELVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 103
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 104 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 159
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 160 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 219
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L+LKL + R +L+G ++
Sbjct: 220 GEVSRVSRKEIGRTYRFISRELSLKLMPTSPIDYVPRFCSGLKLKG----------EVQS 269
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+GV +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 270 KGVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 329
Query: 254 ELLEAL 259
EL E L
Sbjct: 330 ELSEEL 335
>gi|336270840|ref|XP_003350179.1| hypothetical protein SMAC_01071 [Sordaria macrospora k-hell]
gi|380095574|emb|CCC07047.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 862
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 132 EVASVLNCDVYELGR----MITRVVEFLNLKLPEV--DIVSMFERVIRNSRLQGFTNLDE 185
++A +L DV+ LGR +TR EFL P V D++ F S+L+ + ++
Sbjct: 190 DLADLLKVDVFALGRGYKDFLTRFPEFLTGPRPIVIEDLIYRFA-----SKLEFLHDTNK 244
Query: 186 SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTV 245
L +R + + +T GRRP + A L+ + + V V T+
Sbjct: 245 VALSAVRIAKRMQHDN-----ITHGRRPAGICGAALIMAARAHNYRRTVREVVYIVKVTM 299
Query: 246 VTCRKRYKELLEALVKVAQALPW---GKDVTVKNVLKNAPFVMNYME-------MKSMEK 295
T ++R E A V AQ KD + PFV + K
Sbjct: 300 ATIQERMDEF--ASVPAAQLTVQDFHNKDPLEAGPAHDPPFVYKQTDEWKAKHTRPKKRK 357
Query: 296 RKEERDGLNCGG 307
RKE RDG N G
Sbjct: 358 RKEARDGKNKGA 369
>gi|6321685|ref|NP_011762.1| Brf1p [Saccharomyces cerevisiae S288c]
gi|135646|sp|P29056.1|TF3B_YEAST RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|172897|gb|AAB04945.1| transcription factor III B component [Saccharomyces cerevisiae]
gi|172905|gb|AAA35148.1| transcription factor IIIB [Saccharomyces cerevisiae]
gi|258516|gb|AAB23865.1| RNA polymerase III transcription factor 4, PCF4, pol III
transcription initiation factor 4=TFIIB homolog
[Saccharomyces cerevisiae, Peptide, 596 aa]
gi|1323446|emb|CAA97275.1| BRF1 [Saccharomyces cerevisiae]
gi|1702956|emb|CAA68968.1| BRF1 [Saccharomyces cerevisiae]
gi|285812437|tpg|DAA08337.1| TPA: Brf1p [Saccharomyces cerevisiae S288c]
gi|392299501|gb|EIW10595.1| Brf1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 596
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|354611558|ref|ZP_09029514.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196378|gb|EHB61880.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 325
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R I EVA+V D E R +V L L++ D S R
Sbjct: 190 YAAARQMQTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLEVAPADPASYVPRFA----- 244
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
+ LD + D + ++ LL+ A K +T+G+ P+ + A + L V V
Sbjct: 245 ---SELD--LPDEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQV 299
Query: 238 AKEVHCTVVTCRKRYKELLEA 258
+ + VT R RY+ELLEA
Sbjct: 300 SDVTDVSEVTIRNRYQELLEA 320
>gi|328770639|gb|EGF80680.1| hypothetical protein BATDEDRAFT_24490 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/254 (18%), Positives = 98/254 (38%), Gaps = 26/254 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---TAGTGSA 59
C CG ++ G ++C+ CG V + +++ + G + G + G A
Sbjct: 6 CQYCGPTEAETDERMGHIVCLECGAVLEENTIVSEVTFSETSKGSAIADGFQLSTGQARA 65
Query: 60 LN-------------YKEKKIYESNKLIDELTFKLDLTGQRSI--QIKNMIDKITDGEFG 104
N +E+ + ++ I E+ + + + + + F
Sbjct: 66 SNRGTFGLIRTGGQESREQTLQNGHRRIQEVANQPQIRMNERLVGHARRFFNVAVVNNFT 125
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVD 163
G ++ AC Y+V RL+ + + + A L+ +VY++G FL L K+ VD
Sbjct: 126 KGRKSGNVVAACLYIVCRLEKTAHMLIDFADALSTNVYQVG------ATFLALCKISGVD 179
Query: 164 IVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
+ + + + SR + E + ++ L+ W + TGRRP + A L
Sbjct: 180 KMPLVDPSLYISRFAAKLDFGEDTQNIVKDANRLVQRMCRDW-MQTGRRPAGICAASLFV 238
Query: 224 VVELNGVSVKIENV 237
++ + I +
Sbjct: 239 ASRMHNHNRTIREI 252
>gi|378734701|gb|EHY61160.1| transcription initiation factor TFIIB [Exophiala dermatitidis
NIH/UT8656]
Length = 977
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE--------VDIVSMFERVIRNSRLQ 178
SL + + A LN DV+ LG+M + +V L L+ P+ D+++M V+ N R
Sbjct: 216 SLMLIDFAEKLNIDVFALGKMYSDLVRRLYLQ-PDGSVQADVSADLLAMGPEVLVN-RFV 273
Query: 179 GFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVA 238
D D+++ + ++ + +++TGRRP V A ++ +N V
Sbjct: 274 DELEFDREHRDKIKMDAIRIVQRMKRDWMSTGRRPSGVCGAAVILAARMNNYRRTTREVV 333
Query: 239 KEVHCTVVTCRKRYKEL 255
T +T KR E
Sbjct: 334 LTAKVTEITINKRLAEF 350
>gi|323337428|gb|EGA78678.1| Brf1p [Saccharomyces cerevisiae Vin13]
Length = 584
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|330038667|ref|XP_003239664.1| TFIIB related factor hBRF [Cryptomonas paramecium]
gi|327206588|gb|AEA38766.1| TFIIB related factor hBRF [Cryptomonas paramecium]
Length = 385
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 107/252 (42%), Gaps = 45/252 (17%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCG-VVQAF----DNYDAQLYGRDGPTGIYVHVGTAG 55
M C C ++ + I+ +C SCG +V+ + +NY L ++ ++ T+
Sbjct: 1 MKCNKCNKNSIDYQFINSKTLCKSCGTMVEEYHLISENYSDCLNLKNNKIKNFLQKKTSS 60
Query: 56 TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKITDGEF----------- 103
+ ++E++ L D + L+ +R I QI N++ D F
Sbjct: 61 S----------LFETSNLADII----PLSAKRKIAQIVNLLK--LDSTFQEYAYRLFLFV 104
Query: 104 ---GLGDWFPILIGA--CSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158
G+ + +LI C YVV R + + + ++ + +LG + ++V LN+
Sbjct: 105 FQRGIIRKYKLLITCICCVYVVCRYKKAPYLLIDFSEIVQTQLNKLGAIFLKIVRDLNIF 164
Query: 159 LPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
LP +D + N + TN + K + L++ + +++TGR+P +
Sbjct: 165 LPIIDPSLFVHKFATNLQFGNKTN-------AITKTALRLVSKMKRDWISTGRKPSGLCG 217
Query: 219 AVLVFVVELNGV 230
A L+ ++G+
Sbjct: 218 AALLISSCMHGL 229
>gi|323308921|gb|EGA62153.1| Brf1p [Saccharomyces cerevisiae FostersO]
Length = 523
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|207344925|gb|EDZ71907.1| YGR246Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 596
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|323348488|gb|EGA82733.1| Brf1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 596
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|344211069|ref|YP_004795389.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|448667562|ref|ZP_21686062.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|343782424|gb|AEM56401.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|445770130|gb|EMA21198.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 319
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 114/303 (37%), Gaps = 59/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S++++ D G L+C CG+V +AF++ + Q R G PT +
Sbjct: 27 CPECESESIS-SDGGGELVCEDCGLVIEDENIDRGPEWRAFNHSERQSKSRVGAPTTQTM 85
Query: 50 HVGTAGTGSALNYKEKKIY------ESNKLIDELT-----FKLDLTGQRSIQIK-NMIDK 97
H G + +++K+K Y E + L + G+R++Q + ID+
Sbjct: 86 H--DKGLTTQIDWKDKDAYGRSLSSEKRSQMHRLRKWQERIRTKDAGERNLQFALSEIDR 143
Query: 98 ITDG---------------------EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ + G + AC Y R + + EV+ V
Sbjct: 144 MASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATACLYAACRQEGIPRSLEEVSDV 203
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+GR V + L LK+ VD R S L+ + + ++ +
Sbjct: 204 SRVEQKEIGRTYRYVAQELELKMEPVDPKQYVPRFA--SELE--------LSEEVQSKAN 253
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+++ + L +G+ P A + L VA T VT R RY+E +
Sbjct: 254 EIIDTTAEQGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVADVAQVTEVTIRNRYQEQI 313
Query: 257 EAL 259
EA+
Sbjct: 314 EAM 316
>gi|386002924|ref|YP_005921223.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
gi|357210980|gb|AET65600.1| Transcription initiation factor IIB [Methanosaeta harundinacea 6Ac]
Length = 337
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 108/304 (35%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSHALVHDYERAELVCSDCGLVIDENFIDQGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ D
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKTISSKNRAQL-YRLR-KWQRRIRVSNATERNLAFALSELD 157
Query: 108 WFPILIG-------ACSYVVMRLDDKSL-------------------------PISEVAS 135
+G + + + DK+L + E+A
Sbjct: 158 RMASALGLSRNVRETAAVIYRKAVDKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+GR V L LKL + R L+G ++ +G
Sbjct: 218 VSRVSRKEIGRTYRFVSRELALKLMPTSPIDYIPRFCSGLSLKG----------EVQAKG 267
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 268 IEILRQAAEKELTSGRGPTGVAAAAIYIASILCGDRRTQREVADVAGVTEVTIRNRYKEL 327
Query: 256 LEAL 259
E L
Sbjct: 328 AEEL 331
>gi|365765493|gb|EHN07001.1| Brf1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 596
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|151943520|gb|EDN61831.1| transcription factor TFIIIB subunit [Saccharomyces cerevisiae
YJM789]
gi|256272646|gb|EEU07623.1| Brf1p [Saccharomyces cerevisiae JAY291]
gi|259146747|emb|CAY80004.1| Brf1p [Saccharomyces cerevisiae EC1118]
gi|323354892|gb|EGA86725.1| Brf1p [Saccharomyces cerevisiae VL3]
Length = 596
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|225560369|gb|EEH08651.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
capsulatus G186AR]
Length = 832
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G V GT AG
Sbjct: 55 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAVVQGTFVGAGQSY 112
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 113 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 171
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 172 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 231
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 232 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 284
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N I V V T +T +R E
Sbjct: 285 ALILAARMNNFRRTIREVVYVVKVTELTIHQRLNEF 320
>gi|190406748|gb|EDV10015.1| RNA polymerase III transcription factor [Saccharomyces cerevisiae
RM11-1a]
Length = 596
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>gi|307344666|ref|NP_001182550.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Xenopus (Silurana) tropicalis]
Length = 665
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 23/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------AGT 56
C +CG + + G +C CG V + +++ +G GI VG +G
Sbjct: 6 CKNCGCTDIDVDAARGDAVCTGCGSVLEDNIIVSEVQFVEGAGGISSAVGQFVSSECSGK 65
Query: 57 GSAL----------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+L + + + + I L +L L N G
Sbjct: 66 TPSLGEGFYTSVGKESRAQTLQNGKRQIHNLGVQLQLNKHCLDTAFNFFKMAVSKHLTRG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 126 RKMTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R G N + SM + L+ + ++ TGRRP + A L+
Sbjct: 186 YIPRFAHLLEF-GDKNHEVSMT------ALRLVQRMKRDWMHTGRRPSGLCGAALLVASR 238
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ I+ V + V T RKR E
Sbjct: 239 MHDFRRTIKEVIRVVKVCESTLRKRLTEF 267
>gi|452206486|ref|YP_007486608.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082586|emb|CCQ35847.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 337
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 119/305 (39%), Gaps = 67/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + LT + G +C CG+V +AFD+ + R G PT
Sbjct: 43 CPECGGR-LTADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKSRVGAPTTNMM 101
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L ++++ + + +E F+ + +R++ Q ID++
Sbjct: 102 HDKGLSTNIGWQDKDAYGNSLGSRQRQKMQRLRKWNE-RFRTRDSKERNLKQALGEIDRM 160
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LDD LP + E
Sbjct: 161 A---SALG--LPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYAAAKQAGTPRSLDE 215
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
VA V + E+ R VV L L++ D S R + +L E R R
Sbjct: 216 VAGVSRVEKSEIARTYRYVVRELGLEIAPADPKSYVPRFASD------LDLSEEAERRAR 269
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ LL+ A + +G+ P+ + A + L V V++ + VT R RY
Sbjct: 270 Q----LLDGARDAGVHSGKSPVGLAAAAVYAASLLTNEKVTQNAVSEVADISEVTIRNRY 325
Query: 253 KELLE 257
ELLE
Sbjct: 326 HELLE 330
>gi|321260370|ref|XP_003194905.1| transcription factor iiib 70 kd subunit [Cryptococcus gattii WM276]
gi|317461377|gb|ADV23118.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
gattii WM276]
Length = 696
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 22/270 (8%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYV-HVGTA 54
C CG D+S G+++C CG ++ + + GR G +V + T
Sbjct: 6 CPQCGPDGQLETDLSAGNIVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATG 65
Query: 55 GTGSALNYKEKKIYESNKL-----IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
GS ++ E+ K I+ L+ ++ L+ + D +F G
Sbjct: 66 VAGSRGGRGGQQNIENIKAQGASRIEALSRQMHLSSAITRGAIRFFSLAVDNKFNRGRKT 125
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEVDIVSM 167
+I +C Y+ RL + + + + +V+ELG ++ LNL +PEVD
Sbjct: 126 DYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDPMPEVDP--- 182
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
I N R N + L+ W +T GRRP V A L+ +
Sbjct: 183 ---AIYNLRFAHRLNFGAQVNTVAADASRLVRRFRADW-MTQGRRPAGVCGACLIIAGRM 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + VA+ V T +KR E +
Sbjct: 239 SNFLRTPDEVAQVVKVHPNTIKKRLLEFAQ 268
>gi|383624782|ref|ZP_09949188.1| transcription initiation factor IIB [Halobiforma lacisalsi AJ5]
Length = 325
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 117/310 (37%), Gaps = 61/310 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGR-LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTN-LDESMLDRMRKQG 195
D EL R V+ L L++ D S R + + L T + +LD RK+G
Sbjct: 207 SRVDKMELTRTYRYVIRELGLEVQPADPESYVPRFVSDLDLSDETERMARELLDSARKEG 266
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
V +G+ P+ + A + L V V++ + VT R RYKEL
Sbjct: 267 V-----------HSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKEL 315
Query: 256 LEALVKVAQA 265
LEA A A
Sbjct: 316 LEASDTAAPA 325
>gi|294660130|ref|XP_462571.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
gi|199434484|emb|CAG91084.2| DEHA2G23738p [Debaryomyces hansenii CBS767]
Length = 583
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 104/288 (36%), Gaps = 63/288 (21%)
Query: 3 CTSCGSKTLT--REDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTA------ 54
C +CG T R +G + C CG VQ + +++ + +G + G
Sbjct: 9 CPNCGHTNFTVDRYTAAGDISCSRCGTVQVENPIVSEVQFGESSSGAAMVQGAMVGADQA 68
Query: 55 -----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G +A+ +E+ + K I + L + D I D G WF
Sbjct: 69 RATFNGRQNAMESREQTLANGKKKIRRIATALKIP-----------DYIADA---AGAWF 114
Query: 110 PI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+ ++ AC YV R + + + +S L VY LG ++V+ L
Sbjct: 115 RLALTNNFVQGRRSQNVLAACLYVACRKEKTHHMLIDFSSRLQISVYSLGATFLKMVKTL 174
Query: 156 NL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW-------FL 207
++ LP D S+F +Q F E + R Q ++ AVK ++
Sbjct: 175 HITSLPLAD-PSLF--------IQHFA---EKL--NFRDQNSKVIKDAVKLAQRMANDWI 220
Query: 208 TTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP V A ++ +N + H T ++R E
Sbjct: 221 HEGRRPAGVAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLNEF 268
>gi|336254888|ref|YP_004597995.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338877|gb|AEH38116.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 323
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S +L R + L+C CG+V +AF++ + Q R G PT +
Sbjct: 30 CPECNSDSLVRSEDQRELVCDDCGLVVEESNIDRGPEWRAFNHSERQSKSRVGAPTTQAM 89
Query: 50 HVGTAGTGSALNYKEKKIYESNKLIDELT-----------FKLDLTGQRSIQIK-NMIDK 97
H G + +++K Y + D+ + + G+R++Q + ID+
Sbjct: 90 H--DKGLTTQIDWKNTDAYGRSLSADKRSQMRRLRKWQERIRTKDAGERNLQSALSEIDR 147
Query: 98 ITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
++ G+ G + C Y R + + EVA
Sbjct: 148 MSSA-LGIPRSVREVASVVYRRALSEDLIRGRSIEGVATGCLYAACRQEGIPRSLEEVAE 206
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V + E+GR V + L+L+L VD R +L E + + R+
Sbjct: 207 VSRVERKEIGRTYRYVAQELSLELKPVDPQEYVPRFC------SELDLSEEVTAKTRE-- 258
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ + L +G+ P A + L VA+ T VT R RY+E
Sbjct: 259 --IIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAEVAQVTEVTIRNRYQEQ 316
Query: 256 LEAL 259
+EA+
Sbjct: 317 IEAM 320
>gi|50553846|ref|XP_504334.1| YALI0E24035p [Yarrowia lipolytica]
gi|49650203|emb|CAG79933.1| YALI0E24035p [Yarrowia lipolytica CLIB122]
Length = 512
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 101/269 (37%), Gaps = 28/269 (10%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL-----YGRDGPTGIYVH---VG 52
M C CGS ++ R+ S C +CGVV DA + +G VH VG
Sbjct: 1 MKCPRCGSTSIKRDGNDSS--CANCGVVVD----DAPIVSEVTFGESSSGAAVVHGSFVG 54
Query: 53 TAGTGSALN-----YKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+G N +E + + I L +D+ + F G
Sbjct: 55 ADQSGIRNNNFHGESRELTLQKGKNRITALAHAMDIPQHIIEKAHRYFVLAVTKNFVKGR 114
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIVS 166
++ AC YV R + + + + A L C+V+ +G ++++ L++K LP +D
Sbjct: 115 RSQYVVSACLYVACRRELRHEMLIDFADKLFCNVFAIGTTYLQLLKTLDIKNLPLIDPSI 174
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+R + LD +R V L+ + +L GRRP + A L+
Sbjct: 175 YIQRFA--------SKLDFDNAKNVRNDAVRLVQRMGRDYLVEGRRPAGIAAAALLLAAR 226
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N +A T ++R E
Sbjct: 227 MNNQRRSKTQIAFYAKVAEETLQRRLDEF 255
>gi|389847221|ref|YP_006349460.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|448614833|ref|ZP_21663861.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|388244527|gb|AFK19473.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
gi|445752920|gb|EMA04339.1| transcription initiation factor TFB [Haloferax mediterranei ATCC
33500]
Length = 331
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 59/301 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG L ++D G +C CG+V +AFD + R G PT
Sbjct: 36 CPECGG-NLVQDDEHGETVCQECGLVVEDTVVDRGPEWRAFDASERDSKSRVGAPTTKMM 94
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 95 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 153
Query: 99 TDGEFGL-----------------GDWFP-----ILIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R+ D + E+ V
Sbjct: 154 ASA-LGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEKV 212
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R +V L L++ D R + LD + D +Q
Sbjct: 213 SRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFA--------SELD--LSDEAERQAR 262
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V+K + VT R RYKELL
Sbjct: 263 QLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSKVADISEVTIRNRYKELL 322
Query: 257 E 257
E
Sbjct: 323 E 323
>gi|346468655|gb|AEO34172.1| hypothetical protein [Amblyomma maculatum]
Length = 385
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 40/324 (12%)
Query: 3 CTSCGSKTLTREDISG-SLICVSCGVVQAFDNYD---AQLYGRDGPTGIYVHVGTAGTGS 58
C SCG+ + E G S +C +CGVV D+ AQ +G + YV T S
Sbjct: 6 CPSCGASAVIDESGDGISQVCTACGVV--VDSAALCVAQGINSEGLS--YVPSAETATLS 61
Query: 59 ALNYKEKK------IYESNKL-----IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ K K+ SN+L I + K + Q N +K G+ L
Sbjct: 62 MVRTKSKRGTHYHCHLSSNRLRCNDWIKKEGAKFGMDPVMREQACNFFNKHV-GQMPLTQ 120
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSM 167
AC Y V+R ++S+ + + S C L + + V E +++ + +
Sbjct: 121 QL-AFAAACCYQVLRDSNQSVLLHTLTSSAQCSSTHLCQALRMVRETTGVEVGHARVEEL 179
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
V ++ + + + + LL + WFL GR P V A++ +
Sbjct: 180 LPEVAQSLEAKERKEV-------ISRATALLKPLRLCWFL-EGRSPHCVAPALIFTAWKS 231
Query: 228 NGVSVKIENVAKEVHC-------TVVTCRKRYKELLEALVKVAQALPW--GKDVTVKNVL 278
+S ++ + C T CR L + L+++A +PW GK ++ KN
Sbjct: 232 LDISTRVR-TSYPAFCQRHSLPNTKPDCRT-VCGLNKVLIQLAAQIPWLKGKKLSKKNAS 289
Query: 279 KNAPFVMNYMEMKSMEKRKEERDG 302
P V+ Y +++ KE D
Sbjct: 290 VYVPDVIRYAASLAIDGTKEADDS 313
>gi|160331383|ref|XP_001712399.1| tfIIB-brf [Hemiselmis andersenii]
gi|159765847|gb|ABW98074.1| tfIIB-brf [Hemiselmis andersenii]
Length = 408
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 20/265 (7%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGP----TGIYVHVGTA 54
M C CG + G +IC CG++ + N + G+D G +V
Sbjct: 1 MKCIKCGGGEINFNFTEGKIICKFCGLLLEENISNPEITFEGKDKKNFSLNGQFVRNSNI 60
Query: 55 GTGSALNYKEKK----IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFP 110
++L+YK K + + + I++++ L L G + T F G
Sbjct: 61 ---NSLSYKNKFNDLVLSSAKRRINQISHSLKLKGSFQDEAFKFFILATQRGFINGQKLQ 117
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
L + Y V R + + + + ++G + + + L + +P +D +R
Sbjct: 118 NLCVSSLYTVCRQKKTHHLLIDFSDITQIQTNKIGSVFLKFIRDLKINIPVIDPSLYIQR 177
Query: 171 VIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ SRLQ + +R L+ +W ++TGRRP + A ++ +++G+
Sbjct: 178 FV--SRLQLGNKTKLVSMSALR----LIARMKREW-VSTGRRPSGLCGAAILLATKMHGL 230
Query: 231 SVKIENVAKEVHCTVVTCRKRYKEL 255
+ ++ V R R +E+
Sbjct: 231 KKTQKEISSIVRIGDFAIRSRLREI 255
>gi|452206067|ref|YP_007486189.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082167|emb|CCQ35419.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 342
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 12/147 (8%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+ A Y RLD + I E+A+V D E+ R + L L+ P R
Sbjct: 199 MAAASLYAASRLDGVARSIDEIATVSRVDDLEIKRAYRYIDRELGLETPPAHPNEYLGRF 258
Query: 172 IRNSRLQGFTNLD-ESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ LD E +R+ + L AV+ + +G+ P+ + + L L
Sbjct: 259 A--------SELDCEEATERLARD---LAETAVEAAVHSGKSPVGIAASALYAASRLRNE 307
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257
+ +++ + + VT R RY+E+LE
Sbjct: 308 GLTQAAISETANVSEVTIRNRYREVLE 334
>gi|255078514|ref|XP_002502837.1| predicted protein [Micromonas sp. RCC299]
gi|226518103|gb|ACO64095.1| predicted protein [Micromonas sp. RCC299]
Length = 636
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 20/162 (12%)
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL--- 159
F G + AC Y++ R + + + + + V+ +VY LG + ++ L L+
Sbjct: 85 FTRGRRTQQVAAACLYIICRQESRPYMLIDFSDVVQTNVYVLGAVFLQLCRLLRLEQHPL 144
Query: 160 ------PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRP 213
P + I +R+ ++ N ++ M++ W + TGRRP
Sbjct: 145 ISKPIDPSLFIHRFADRLTLGRKMHAVANTALRLVASMKRD----------W-MQTGRRP 193
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
V A L L+G +V VH T RKR E
Sbjct: 194 SGVCGAALWVAALLHGYERSKRDVVAVVHVGEATLRKRVTEF 235
>gi|121706010|ref|XP_001271268.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
gi|119399414|gb|EAW09842.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus clavatus NRRL 1]
Length = 755
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 113/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 61 PNPGCPAPHIVEDD--GHKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGAFVGEDQTH 118
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G A+ +E N+ I++L+ L++ + +++ + K+ G F
Sbjct: 119 VRSYGPGFQRGGAMESREITEQNGNRYINQLSRALNIP-ESAMKAAGQVFKLAVGLNFIQ 177
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 178 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLM 237
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 238 NPIDPESLIYRFAKQLEFGTATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 290
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 291 ALILAARMNNFRRTVREVVYVVKVTEITINQRLNEF 326
>gi|357622230|gb|EHJ73794.1| TFIIB-related factor [Danaus plexippus]
Length = 195
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYVHV----G 52
C CGS + + G +C +CG ++ A + +G G +V G
Sbjct: 6 CKHCGSSEIEVDPARGDAVCTNCGSVLEDNIIVAEVEFQENAHGGASAIGQFVSADSKGG 65
Query: 53 TAGTGSALNY------KEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFGL 105
+G G A N +E + ++ + I L +L L Q+ I I N +
Sbjct: 66 ASGFGRAFNAGIGQESREITLRKAREGITALCQQLRLN-QQCIDIACNFFKMALARHLTI 124
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLP 160
G + AC Y+ R + + +++ L D Y+LGR ++ + L + +P
Sbjct: 125 GRQSALTQAACVYITCRTEGTPHLLIDISDALQIDCYQLGRTYFKLSKALCINIP 179
>gi|242018725|ref|XP_002429824.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
gi|212514842|gb|EEB17086.1| transcription initiation factor IIB, putative [Pediculus humanus
corporis]
Length = 184
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 19/178 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG----------VVQAFDNYD------AQLYGRDGPTG 46
C +CG + + G +C +CG VQ DN Q D G
Sbjct: 6 CKNCGCAEIDVDPARGDAVCTNCGSVLESNIIVSSVQFEDNAHGGSTAIGQFVASDSKGG 65
Query: 47 IYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFGL 105
G+ TG + KE + + K I +L ++ L Q I+I N
Sbjct: 66 ARSFGGSFHTGLGVESKEITLRNAKKKITDLAHQMRLN-QHCIEIAYNFFKMALSRHLTR 124
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNC-DVYELGRMITRVVEFLNLKLPEV 162
G ++ AC Y+ R++ + + + VL+ VYELGR ++ + L + +P +
Sbjct: 125 GRKTGNVVAACVYMTCRMEGTAHMLIDFCDVLDTVGVYELGRTYLKLSQALCINIPAL 182
>gi|365983082|ref|XP_003668374.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
gi|343767141|emb|CCD23131.1| hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Length = 636
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 60/290 (20%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C SC R+ + + L+C SCG V DN + G G ++
Sbjct: 1 MPVCKSCKGTEFERDHSNANSDLVCKSCGFVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA-------GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEF 103
G + G SAL+ +E + + + + ++ L + + ITD F
Sbjct: 60 AGQSHASFMSHGGSSALDSRENTLNNARRKLRAVSHALSIP-----------EYITDAAF 108
Query: 104 GLGDWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149
W+ + +I +C YV R + + + +S L VY +G
Sbjct: 109 ---QWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFL 165
Query: 150 RVVEFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKW 205
++V+ L++ KLP D S+F +Q F +L + + ++ L + W
Sbjct: 166 KMVKRLHISKLPLAD-PSLF--------IQHFAEKLDLGDKKIKVVKDAVKLAQRMSHDW 216
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 217 MF-EGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETLQQRLNEF 265
>gi|448529404|ref|ZP_21620542.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445709166|gb|ELZ60999.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 324
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 124/310 (40%), Gaps = 65/310 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + T + G +CV CG+V +AFD+ + R G PT
Sbjct: 29 CPECGGQLATDTE-HGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKSRVGAPTTNMM 87
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 88 HDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 144
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 145 RMASALG--LPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 202
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A+V + E+ R VV L L++ D S R F + D + D +
Sbjct: 203 AAVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPR---------FAS-DLGLSDEAER 252
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ LL+ A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 253 RARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYH 312
Query: 254 ELLEALVKVA 263
ELLEA VA
Sbjct: 313 ELLEAEDSVA 322
>gi|448381827|ref|ZP_21561803.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
gi|445662908|gb|ELZ15671.1| transcription initiation factor IIB [Haloterrigena thermotolerans
DSM 11522]
Length = 341
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 59/302 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 47 CPECGGR-LVSDDGRAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 105
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 106 HDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNER-FRTRNSKERNLKQALGEIDRM 164
Query: 99 TDGEFGLGDWF--------------PILIG--------ACSYVVMRLDDKSLPISEVASV 136
GL D +L G A Y R + E+A+V
Sbjct: 165 ASA-LGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIAAV 223
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+ R VV L L++ D S R ++LD + D ++
Sbjct: 224 SRVEKAEIARTYRYVVRELGLEVQPADPESYVPRFA--------SDLD--LADETERRAR 273
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL+ A + + +G+ P+ + A + L V +V+ + VT R RYKELL
Sbjct: 274 DLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKELL 333
Query: 257 EA 258
EA
Sbjct: 334 EA 335
>gi|50302609|ref|XP_451240.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|52788254|sp|P46070.2|TF3B_KLULA RecName: Full=Transcription factor IIIB 70 kDa subunit;
Short=TFIIIB; AltName: Full=B-related factor 1;
Short=BRF-1
gi|49640371|emb|CAH02828.1| KLLA0A05434p [Kluyveromyces lactis]
Length = 556
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 57/286 (19%)
Query: 3 CTSCGSKTLTREDISGS---LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG------- 52
C +CGS R DIS + LIC CG+V ++ +++ + G V G
Sbjct: 12 CKNCGSTDFVR-DISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQ 70
Query: 53 ------TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ +AL +E + + + + +++ L N+ + +TD F
Sbjct: 71 AHPTFMSHSGQNALMSRETTLNNARRKLKAVSYAL-----------NIPEYVTDAAF--- 116
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I AC Y+ R + + + +S L VY +G ++
Sbjct: 117 QWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLA 176
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR--KQGVLLLNCAVKWFLTT 209
+ L + KLP D S+F +Q F E +++ + V L + ++
Sbjct: 177 KKLQIVKLPLAD-PSLF--------IQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYE 227
Query: 210 GRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A L+ +N + + H T ++R E
Sbjct: 228 GRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLNEF 273
>gi|161527525|ref|YP_001581351.1| transcription factor TFIIB cyclin-related protein [Nitrosopumilus
maritimus SCM1]
gi|160338826|gb|ABX11913.1| Transcription factor TFIIB cyclin-related [Nitrosopumilus maritimus
SCM1]
Length = 306
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 102/278 (36%), Gaps = 57/278 (20%)
Query: 18 GSLICVSCGVV------------QAFDNYDAQLYGRDGPT--------GIYVHVGTA--G 55
G ++C CG++ + D R GP G+ +G+
Sbjct: 30 GEIVCGGCGLILVQNLADASYENNGYTQEDFMKQARTGPATSLTMFDKGLSTVIGSNKDS 89
Query: 56 TGSALNYKEKKIYESNKLI---------DELTFKLDLTGQRSIQIK-----NMID----- 96
+G+AL K K YE N+L T T S++ K N+++
Sbjct: 90 SGNALPSKTK--YEFNRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLSVPDNVVENAAYI 147
Query: 97 --KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154
KI + G LI A Y R ++ + ++A N + L R + +++
Sbjct: 148 YRKIVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIAKAGNVERRILSRDLRTIIKK 207
Query: 155 LNLKLPEVDIVSMFERVIRNSRLQGFTNLDE-SMLDRMRKQGVLLLNCAVKWFLTTGRRP 213
L L L + D S ++ N L+ T +L R ++G+ T G+ P
Sbjct: 208 LGLNLNQYDTASFISKISNNMNLKETTKRGAFDILKRCEEEGI-----------TAGKHP 256
Query: 214 MPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
+ A L LNG V + V+ E + VT R R
Sbjct: 257 VAQAAASLYISCVLNGERVSQKRVSVEAGVSDVTIRNR 294
>gi|7023474|dbj|BAA91975.1| unnamed protein product [Homo sapiens]
Length = 419
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTCMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|11968170|gb|AAG35669.2|AF206673_1 TFIIIB50 [Homo sapiens]
Length = 419
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|22035562|ref|NP_060780.2| transcription factor IIIB 50 kDa subunit [Homo sapiens]
gi|114619669|ref|XP_001169914.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Pan
troglodytes]
gi|397521403|ref|XP_003830786.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Pan paniscus]
gi|74734246|sp|Q9HAW0.1|BRF2_HUMAN RecName: Full=Transcription factor IIIB 50 kDa subunit;
Short=TFIIIB50; Short=hTFIIIB50; AltName: Full=B-related
factor 2; Short=BRF-2; AltName: Full=hBRFU
gi|11096175|gb|AAG30222.1|AF298153_1 RNA polymerase III transcription initiation factor BRFU [Homo
sapiens]
gi|14714978|gb|AAH10648.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Homo sapiens]
gi|119583755|gb|EAW63351.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like, isoform CRA_a [Homo sapiens]
gi|119583756|gb|EAW63352.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like, isoform CRA_a [Homo sapiens]
gi|119583757|gb|EAW63353.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like, isoform CRA_a [Homo sapiens]
gi|167773217|gb|ABZ92043.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [synthetic construct]
gi|189067871|dbj|BAG37809.1| unnamed protein product [Homo sapiens]
gi|208965896|dbj|BAG72962.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [synthetic construct]
gi|410218058|gb|JAA06248.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Pan troglodytes]
gi|410287486|gb|JAA22343.1| BRF2, subunit of RNA polymerase III transcription initiation
factor, BRF1-like [Pan troglodytes]
Length = 419
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|150401578|ref|YP_001325344.1| transcription initiation factor IIB [Methanococcus aeolicus
Nankai-3]
gi|189029853|sp|A6UW60.1|TF2B_META3 RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|150014281|gb|ABR56732.1| Transcription factor TFIIB cyclin-related [Methanococcus aeolicus
Nankai-3]
Length = 334
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+A + D E+GR + L ++L + R +L G
Sbjct: 209 LDEIAEMSRVDRKEIGRTYRFISRELKIRLAPTSPIDYVPRFASELKLPG---------- 258
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A LT+GR P V A + L+G VA T VT R
Sbjct: 259 EVESKAISILQKAGDKGLTSGRGPTGVAAAAIYIASVLHGTRKTQREVADVAGVTEVTIR 318
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 319 NRYKELTEHL 328
>gi|313126285|ref|YP_004036555.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|448286126|ref|ZP_21477361.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
gi|312292650|gb|ADQ67110.1| Transcription initiation factor IIB (TFIIB) [Halogeometricum
borinquense DSM 11551]
gi|445575177|gb|ELY29656.1| transcription initiation factor iib (tfiib) [Halogeometricum
borinquense DSM 11551]
Length = 330
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 49/296 (16%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +T ++ G +C CG+V +AF++ + R G PT
Sbjct: 35 CPECGGSLIT-DEARGETVCGDCGLVVETDAVDRGPEWRAFNSSERDSKSRVGAPTTRMM 93
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G AL+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 94 HDKGLSTNIGWQNKDAYGKALSARQREQMQRLRTWNE-RFRTRNSKERN--LKQALGEID 150
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R LDD LP + V +Y R R ++ L
Sbjct: 151 RMASALG--LPENVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARQAGTPRSLDEL 208
Query: 156 NL--KLPEVDIVSMFERVIRNSRLQ------------GFTNLDESMLDRMRKQGVLLLNC 201
++ ++++ + V+R +L+ + LD + D +Q LL
Sbjct: 209 ETVSRVDKMELTRTYRYVVRELKLEIEPADPEQYVPRFASELD--LSDEAERQARDLLRN 266
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
A K + +G+ P+ + A + L V V++ + VT R RYKELLE
Sbjct: 267 AKKAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVASISEVTIRNRYKELLE 322
>gi|134113394|ref|XP_774722.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257366|gb|EAL20075.1| hypothetical protein CNBF4010 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 694
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 22/270 (8%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYV-HVGTA 54
C CG D+S G+++C CG ++ + + GR G +V + T
Sbjct: 6 CPQCGPDGQLETDLSAGNIVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATG 65
Query: 55 GTGSALNYKEKKIYESNKL-----IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
GS ++ E+ K I+ L+ ++ L+ + D +F G
Sbjct: 66 VAGSRGGRGGQQNIENIKAQGASRIEALSRQMHLSSAITRGAIRFFSLAVDNKFNRGRKT 125
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEVDIVSM 167
+I +C Y+ RL + + + + +V+ELG ++ LNL +PEVD
Sbjct: 126 DYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDPMPEVDP--- 182
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
I N R N + L+ W +T GRRP V A L+ +
Sbjct: 183 ---AIYNLRFAHRLNFGAQVNTVAADASRLVRRFRADW-MTQGRRPAGVCGACLIIAGRM 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + VA+ V T +KR E +
Sbjct: 239 SNFLRTPDEVAQVVKVHPNTIKKRLLEFAQ 268
>gi|344212801|ref|YP_004797121.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343784156|gb|AEM58133.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 339
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 119/304 (39%), Gaps = 55/304 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +T +D G +C +CG+V +AFD+ + R G PT
Sbjct: 30 CPDCGGSLVT-DDSRGETVCEACGLVVDEDEIDHGPEWRAFDSQERDNKRRVGAPTTEMK 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + DE D + Q ID++
Sbjct: 89 HDKGLSTNIGWQNKDAYGNSLSTRQREKMQRLRTWDERFRTRDHAERNLKQALGEIDRMG 148
Query: 100 DG-------------------EFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
+ G+ G + A Y +R + + ++A V
Sbjct: 149 SALGVPESARETASVIYRRALDEGMLPGRSIEGMATAALYAAIRQSNLPQTLDDMAVVSR 208
Query: 139 CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLL 198
D E R + L+L++ D + + I + LD D + +Q L
Sbjct: 209 VDEMEFTRAYRYLNRELSLQVGPPDPATYLSKFI--------SELDAD--DALERQARAL 258
Query: 199 LNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ + + +G+ P+ + A + L G + E V++ + VT R+RY+ELLEA
Sbjct: 259 IEAGKEANVHSGKSPVGLAAAAIYAAGLLLGEEMTQETVSEATDISTVTIRERYRELLEA 318
Query: 259 LVKV 262
++
Sbjct: 319 EAEL 322
>gi|58268656|ref|XP_571484.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227719|gb|AAW44177.1| transcription factor iiib 70 kd subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 691
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 22/270 (8%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYV-HVGTA 54
C CG D+S G+++C CG ++ + + GR G +V + T
Sbjct: 6 CPQCGPDGQLETDLSAGNIVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATG 65
Query: 55 GTGSALNYKEKKIYESNKL-----IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
GS ++ E+ K I+ L+ ++ L+ + D +F G
Sbjct: 66 VAGSRGGRGGQQNIENIKAQGASRIEALSRQMHLSSAITRGAIRFFSLAVDNKFNRGRKT 125
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEVDIVSM 167
+I +C Y+ RL + + + + +V+ELG ++ LNL +PEVD
Sbjct: 126 DYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDPMPEVDP--- 182
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
I N R N + L+ W +T GRRP V A L+ +
Sbjct: 183 ---AIYNLRFAHRLNFGAQVNTVAADASRLVRRFRADW-MTQGRRPAGVCGACLIIAGRM 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + VA+ V T +KR E +
Sbjct: 239 SNFLRTPDEVAQVVKVHPNTIKKRLLEFAQ 268
>gi|408405841|ref|YP_006863824.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408366437|gb|AFU60167.1| transcription initiation factor IIB [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 297
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 115/297 (38%), Gaps = 55/297 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYD------AQLYG---RDGPT------ 45
C +CG + SG LIC CG V + N + A+ G R PT
Sbjct: 10 CPNCGDGQKVTDVESGELICTKCGFVIRERVGNEEEDWSVLAREPGSKLRTSPTSLARSG 69
Query: 46 -GIYVHVGTA--GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIK---------- 92
G+ +G GS LN + ++ + D F++ +RS++
Sbjct: 70 MGLSTIIGRPDMSAGSGLNAAMRSTFDRLRAWD---FRIKGQDERSLRRAFVELDRLRSA 126
Query: 93 -NMIDKITD---------GEFGL--GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140
+ D I + E GL G ++GA Y+V R S + ++ + N
Sbjct: 127 LGLSDAIVEKTAYIYRRAQERGLVRGRTMRAVLGAAIYIVQREMGVSGTLQDIINATNTT 186
Query: 141 VYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLN 200
+L R ++ L+LK+P +D RV + N+ E R +++ + ++
Sbjct: 187 EKDLARAYRILLRELDLKVPMLDPAKCVSRVASKA------NISE----RTKRKAMDMIY 236
Query: 201 CAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+K L G+ PM + +VL +G +A + VT RK + ++E
Sbjct: 237 NVIKSGLAAGKDPMGLAASVLYIACTSSGEPKSQAAIADAAGVSEVTLRKNQRMIIE 293
>gi|296221995|ref|XP_002756997.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Callithrix
jacchus]
Length = 419
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELASETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPW 268
+ ++ ++A+ V R +ELL L+++A+ L W
Sbjct: 236 SLQPAYRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEHLAW 282
>gi|426359352|ref|XP_004046940.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Gorilla
gorilla gorilla]
Length = 419
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>gi|45190394|ref|NP_984648.1| AEL213Wp [Ashbya gossypii ATCC 10895]
gi|44983290|gb|AAS52472.1| AEL213Wp [Ashbya gossypii ATCC 10895]
Length = 571
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGT 53
C +CG + + + + +C +CGVV + DN + G G +V G
Sbjct: 4 CKNCGHTEIVVDLSNANNDRVCKACGVV-SEDNPIVSEVTFGETSSGAAVVQGSFVAAGQ 62
Query: 54 AGTG------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A SAL +E + + + + ++ L + F G
Sbjct: 63 AHAAFGPHGTSALESREATLNNARRKLQAVSHALQIPEYVREAAFQWYQLALSNNFVQGR 122
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIVS 166
+I AC YV R + + + +S L VY +G ++V+ L++ KLP D S
Sbjct: 123 RSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVKLPLAD-PS 181
Query: 167 MFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
+F +Q F +L + + ++ K V L K ++ GRRP + A L+
Sbjct: 182 LF--------IQHFAEKLDLGDKKI-KVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLL 232
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V H T ++R E
Sbjct: 233 ACRMNNLRRTHSEVVAVSHVAEETLQQRLNEF 264
>gi|222479752|ref|YP_002565989.1| transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
gi|222452654|gb|ACM56919.1| Transcription factor TFIIB cyclin-related [Halorubrum lacusprofundi
ATCC 49239]
Length = 326
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 120/305 (39%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L + G +CV CG+V +AFD+ + R G PT
Sbjct: 31 CPEC-SGQLASDTEHGETVCVDCGLVVEEDEIDRGPEWRAFDSSEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 90 HDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGEID 146
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 147 RMASALG--LPDNVRETASVIYRRALDEDLLPGRSIEGVSTSSLYAAARQAGTPRSLDEI 204
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A+V + E+ R VV L L++ D S R F + D + D +
Sbjct: 205 AAVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPR---------FAS-DLGLSDEAER 254
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ LLN A + L +G+ P+ + A + L V V+ + + VT R RY
Sbjct: 255 RARSLLNTAKEQGLHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRYH 314
Query: 254 ELLEA 258
ELLEA
Sbjct: 315 ELLEA 319
>gi|374107864|gb|AEY96771.1| FAEL213Wp [Ashbya gossypii FDAG1]
Length = 571
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 104/272 (38%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGT 53
C +CG + + + + +C +CGVV + DN + G G +V G
Sbjct: 4 CKNCGHTEIVVDLSNANNDRVCKACGVV-SEDNPIVSEVTFGETSSGAAVVQGSFVAAGQ 62
Query: 54 AGTG------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
A SAL +E + + + + ++ L + F G
Sbjct: 63 AHAAFGPHGTSALESREATLNNARRKLQAVSHALQIPEYVREAAFQWYQLALSNNFVQGR 122
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIVS 166
+I AC YV R + + + +S L VY +G ++V+ L++ KLP D S
Sbjct: 123 RSQNVIAACLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKVLHIVKLPLAD-PS 181
Query: 167 MFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
+F +Q F +L + + ++ K V L K ++ GRRP + A L+
Sbjct: 182 LF--------IQHFAEKLDLGDKKI-KVVKDAVKLAQTMSKDWMYEGRRPAGIAGACLLL 232
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V H T ++R E
Sbjct: 233 ACRMNNLRRTHSEVVAVSHVAEETLQQRLNEF 264
>gi|448448980|ref|ZP_21591478.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814072|gb|EMA64044.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 325
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 115/309 (37%), Gaps = 63/309 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + T + G +CV CG+V +AFD+ + R G PT +
Sbjct: 30 CPECGGQLATDTE-HGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDSKSRVGAPTTNMM 88
Query: 50 HVGTAGTGSALNYKEKKIY---------ESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
H G + + +++K Y E + + + + +K + +I
Sbjct: 89 H--DKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 146
Query: 101 GEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEVA 134
LG P + + V+ R LD+ LP + E+A
Sbjct: 147 MASALG--LPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIA 204
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
V + E+ R VV L L++ D S R F + D + D ++
Sbjct: 205 GVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPR---------FAS-DLGLSDEAERR 254
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
LL+ A + + +G+ P+ + A + L V V++ + + VT R RY E
Sbjct: 255 ARSLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHE 314
Query: 255 LLEALVKVA 263
LLEA VA
Sbjct: 315 LLEAEDSVA 323
>gi|448575069|ref|ZP_21641592.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445732748|gb|ELZ84330.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 315
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 44/301 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C C S++L + G +C CG+V +AF++ + R G PT
Sbjct: 17 LECPECESESLVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSTEKNQKSRVGAPTTN 76
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGE 133
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVV 152
I LG P + + V+ R L+D LP + V +Y RM +
Sbjct: 134 IDRMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATSSLYAAARMADTPRSLD 191
Query: 153 EFLNLKLPEVD-IVSMFERVIRNSRLQGFTNLDESMLDRM----------RKQGVLLLNC 201
E ++ E D I + V+R +L+ E + R ++ LL
Sbjct: 192 EITSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEPERRARQLLKN 251
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + + +G+ P+ + A + L V V++ + + VT R RY ELLEA K
Sbjct: 252 AKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEK 311
Query: 262 V 262
Sbjct: 312 A 312
>gi|448727279|ref|ZP_21709645.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
gi|445791493|gb|EMA42133.1| transcription initiation factor TFB 2 [Halococcus morrhuae DSM
1307]
Length = 326
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 120/306 (39%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + G +C +CG+V +AFD+ + R G PT
Sbjct: 31 CPECGGR-LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G+AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 149 ASA---LG--LPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDE 203
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A+V EL R VV L L++ D S R + L E R R
Sbjct: 204 IATVSRVGKMELTRTYRYVVRELGLEIQPADPASYVPRFASD------LELSEEAERRAR 257
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ LL A + +G+ P+ + A + L V V++ + VT R RY
Sbjct: 258 Q----LLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRY 313
Query: 253 KELLEA 258
KELLEA
Sbjct: 314 KELLEA 319
>gi|409730105|ref|ZP_11271696.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|448722749|ref|ZP_21705280.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
gi|445788886|gb|EMA39587.1| transcription factor TFIIB cyclin-related protein [Halococcus
hamelinensis 100A6]
Length = 327
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 65/307 (21%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C CG + L + G +C+ CG+V +AFD+ + R G PT
Sbjct: 30 LTCPECGGR-LAADTEHGETVCMDCGLVVETDEIDRGPEWRAFDSAERDQKSRVGAPTTN 88
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G+AL+ ++++ + + +E F+ + +R++ K + +
Sbjct: 89 MMHDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGE 145
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------IS 131
I LG P + + V+ R LD+ LP +
Sbjct: 146 IDRMASALG--LPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLD 203
Query: 132 EVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRM 191
E+A+V EL R VV L L++ D S R + +L E R
Sbjct: 204 EIATVSRVGKMELTRTYRYVVRELGLEIQPADPASYVPRFASD------LDLSEESERRA 257
Query: 192 RKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
R+ LL A + +G+ P+ + A + L V V++ + VT R R
Sbjct: 258 RQ----LLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNR 313
Query: 252 YKELLEA 258
YKELLEA
Sbjct: 314 YKELLEA 320
>gi|431902262|gb|ELK08763.1| Transcription factor IIIB 50 kDa subunit [Pteropus alecto]
Length = 421
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELADETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
S ++ ++A+ V R +ELL L+++A+ L W + + + ++V+K
Sbjct: 236 SLQPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
++ + ++ + RK R+G
Sbjct: 296 ---YIGDLLQHRHTLIRKAFREG 315
>gi|333911004|ref|YP_004484737.1| transcription initiation factor IIB [Methanotorris igneus Kol 5]
gi|333751593|gb|AEF96672.1| Transcription initiation factor IIB [Methanotorris igneus Kol 5]
Length = 343
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+A D E+GR + L +KL + + R L G
Sbjct: 218 LDEIAEASRVDRKEIGRTYRFLARELGIKLAPTNPIDYVPRFASELGLPG---------- 267
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A + LT+GR P V A + L G +VA+ T VT R
Sbjct: 268 EVESKAIAILQKAAEKGLTSGRGPTGVAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIR 327
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 328 NRYKELTEHL 337
>gi|302837151|ref|XP_002950135.1| hypothetical protein VOLCADRAFT_90667 [Volvox carteri f.
nagariensis]
gi|300264608|gb|EFJ48803.1| hypothetical protein VOLCADRAFT_90667 [Volvox carteri f.
nagariensis]
Length = 423
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 113 IGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVI 172
+GA Y+ R + +L ++EVA D++ +G M + FL L LP VD+ R+
Sbjct: 234 LGALLYLASRSERGTLTLAEVAMATCTDIFRVGEMARQQAAFLQLSLPAVDVERFVMRMA 293
Query: 173 RNSRLQGFTNLDESMLD 189
R G ES +
Sbjct: 294 RELVASGQLQQQESTTE 310
>gi|448739366|ref|ZP_21721381.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
gi|445799961|gb|EMA50330.1| transcription initiation factor TFB 2 [Halococcus thailandensis JCM
13552]
Length = 326
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 120/306 (39%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + G +C +CG+V +AFD+ + R G PT
Sbjct: 31 CPECGGR-LAADSEHGETVCTNCGLVVEADEIDRGPEWRAFDSAERDQKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G+AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDKGLSTNIGWQNKDAYGNALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 149 ASA---LG--LPDSVRETASVIYRRALDEDLLPGRSIEGVSTSALYAAARQAGTPRSLDE 203
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A+V EL R VV L L++ D S R + L E R R
Sbjct: 204 IATVSRVGKMELTRTYRYVVRELGLEIQPADPASYVPRFASD------LELSEEAERRAR 257
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ LL A + +G+ P+ + A + L V V++ + VT R RY
Sbjct: 258 Q----LLETAKDEGIISGKSPVGLAAAAVYAAALLTNEKVTQGAVSEVADISEVTIRNRY 313
Query: 253 KELLEA 258
KELLEA
Sbjct: 314 KELLEA 319
>gi|336254131|ref|YP_004597238.1| transcription initiation factor IIB [Halopiger xanaduensis SH-6]
gi|335338120|gb|AEH37359.1| Transcription initiation factor IIB [Halopiger xanaduensis SH-6]
Length = 325
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 117/309 (37%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGR-LVSDAEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R ++ L L++ D S R + ++LD + D +
Sbjct: 207 SRVDKMELTRTYRYIIRELGLEVQPADPESYVPRFV--------SDLD--LSDETERMAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A K + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 257 ELLESARKAGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 316
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 317 EASDTAAPA 325
>gi|448502246|ref|ZP_21612519.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445694402|gb|ELZ46531.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 325
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 118/307 (38%), Gaps = 59/307 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + T + G +CV CG+V +AFD+ + R G PT
Sbjct: 30 CPECGGQLATDTE-HGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDNKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLGDWF--------------PILIG--------ACSYVVMRLDDKSLPISEVASV 136
GL D +L G A Y R + E+A V
Sbjct: 148 ASA-LGLPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIAGV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+ R VV L L++ D S R D + D ++
Sbjct: 207 SRVEKDEIARTYRYVVRELKLEIQPADPESYVPRFAS----------DLGLSDEAERRAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL+ A + + +G+ P+ + A + L V V++ + + VT R RY ELL
Sbjct: 257 SLLDTAKEQGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSEVANISEVTIRNRYHELL 316
Query: 257 EALVKVA 263
EA VA
Sbjct: 317 EAEDSVA 323
>gi|448100207|ref|XP_004199299.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359380721|emb|CCE82962.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 571
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 49/281 (17%)
Query: 3 CTSCGSKTLT--REDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------- 53
C +CG + R S + C CG V+ + +++ + TG + G
Sbjct: 8 CRNCGHTNFSVDRFTASADVSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQA 67
Query: 54 ----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G +A+ +E+ + K I ++ L + D I+D +WF
Sbjct: 68 RAPYGGRQNAMESREQTFEKGKKRIKKIATALRIP-----------DYISDA---ASEWF 113
Query: 110 PI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+ ++ AC YV R + + + +S L VY LG ++V+ L
Sbjct: 114 RLALLNNFVQGRRSQNVLAACLYVACRKEKTHHMLIDFSSRLQISVYSLGATFLKMVKAL 173
Query: 156 NL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214
+ KLP D + + GF ++ K V L ++ GRRP
Sbjct: 174 QITKLPLADPSLFIQHFVEK---LGFRESTSKVI----KDAVKLAQRMANDWIHEGRRPA 226
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ A ++ +N + H T ++R E
Sbjct: 227 GIAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLNEF 267
>gi|448436023|ref|ZP_21587039.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
gi|445683183|gb|ELZ35586.1| transcription factor TFIIB cyclin-related protein [Halorubrum
tebenquichense DSM 14210]
Length = 384
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL + D
Sbjct: 260 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRLD--------LSD 309
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
++ LL+ A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 310 ETERRARELLDDAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIR 369
Query: 250 KRYKELLEALVKVA 263
RYKELLEA VA
Sbjct: 370 NRYKELLEASGDVA 383
>gi|417403827|gb|JAA48700.1| Putative transcription initiation factor tfiiib brf1 subunit
[Desmodus rotundus]
Length = 676
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 93/270 (34%), Gaps = 25/270 (9%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVHVGTAG 55
C CG + + G +C CG V DN + G G +V + AG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTGCGSVLE-DNIIVSEVQFVESSGGGSSAVGQFVSLDGAG 64
Query: 56 TGSALNY----------KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
+L + + + + I L +L L N
Sbjct: 65 KTPSLGSGFHVNLGKESRAQTLQNGRRQIHHLGSQLQLNQHCLDTAFNFFKMAVSKHLTR 124
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G +I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 125 GRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPC 184
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R G N + SM + LL + ++ TGRRP + A L+
Sbjct: 185 LYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAA 237
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ I+ V V T RKR E
Sbjct: 238 RMHDFRRTIKEVISVVKVCESTLRKRLTEF 267
>gi|327311923|ref|YP_004338820.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
gi|326948402|gb|AEA13508.1| transcription initiation factor IIB [Thermoproteus uzoniensis
768-20]
Length = 317
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+++P D V RV +L G
Sbjct: 190 PLDELIRFTKASRREVARCYRLLLRELNVRVPISDPVLYISRVAEQLKLTG--------- 240
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + ++N A K LT G+ P + A + L+G + ++ A T VT
Sbjct: 241 -DVVKTAIDIINKAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAIAAGVTEVTV 299
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 300 RNRYKELAKAL 310
>gi|432940985|ref|XP_004082772.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Oryzias
latipes]
Length = 684
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 23/269 (8%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQL----YGRDGPTGIYVHVGTAG--- 55
C +CGS + + G+ +C+SCG V + +++ G G + V + G
Sbjct: 6 CKNCGSTAIDVDHARGNAVCMSCGSVLDDNIIVSEVEFVETGGGGSLAVGQFVSSEGGQR 65
Query: 56 ---------TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + + + + + I+ L +L + N + G
Sbjct: 66 LPSFGDSYYPGVGSQSRAQTLQRAKQNINTLGHQLQMNQHCLDTAFNFYKMALNKRLTNG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVS 166
+I AC Y+V R + + +++ VL +VY LG++ + + L + P +D
Sbjct: 126 HRSSHVIAACLYLVCRTEGTPHMLLDLSDVLQVNVYVLGKVFLHLAKELCINAPAIDPCL 185
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
R + G N D SM + L+ + ++ TGRRP + A L+
Sbjct: 186 YIPRFAQMLEF-GEKNHDVSMT------AMRLVQRMKRDWMHTGRRPSGLCGAALLVSAH 238
Query: 227 LNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ ++ V V T RKR E
Sbjct: 239 MHDFCRTVKEVVNVVKVCESTLRKRLTEF 267
>gi|194377318|dbj|BAG57607.1| unnamed protein product [Homo sapiens]
Length = 396
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 93 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 152
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 153 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQ 212
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 213 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 259
>gi|380812142|gb|AFE77946.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|448103917|ref|XP_004200158.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
gi|359381580|emb|CCE82039.1| Piso0_002732 [Millerozyma farinosa CBS 7064]
Length = 570
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 49/281 (17%)
Query: 3 CTSCGSKTLT--REDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT------- 53
C +CG + R S + C CG V+ + +++ + TG + G
Sbjct: 8 CRNCGHTNFSVDRFTASADVSCSRCGTVREENPIVSEVQYGESSTGAAMVQGAMVGADQA 67
Query: 54 ----AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
G +A+ +E+ + K I ++ L + D I+D +WF
Sbjct: 68 RAPYGGRQNAMESREQTFEKGKKRIKKIATALRIP-----------DYISDA---ASEWF 113
Query: 110 PI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL 155
+ ++ AC YV R + + + +S L VY LG ++V+ L
Sbjct: 114 RLALLNNFVQGRRSQNVLAACLYVACRKEKTHHMLIDFSSRLQISVYSLGATFLKMVKAL 173
Query: 156 NL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214
+ KLP D + + + T+ ++ K V L ++ GRRP
Sbjct: 174 QITKLPLADPSLFIQHFVEKLDFRESTS-------KVIKDAVKLAQRMANDWIHEGRRPA 226
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ A ++ +N + H T ++R E
Sbjct: 227 GIAGACVLLAARMNNFRRTHAEIVAVAHVAEETLQRRLNEF 267
>gi|352682668|ref|YP_004893192.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
gi|269990954|emb|CAP46908.1| transcription initiation factor IIB [Thermoproteus tenax Kra 1]
gi|350275467|emb|CCC82114.1| transcription initiation factor B [Thermoproteus tenax Kra 1]
Length = 332
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+++P D V RV +L G ++ ++ +
Sbjct: 205 PLDELIRYTKASRREVARCYRLLLRELNVRVPISDPVLYISRVAEQLKLTG--DVVKTAI 262
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
D ++N A K LT G+ P + A + L+G + ++ A T VT
Sbjct: 263 D--------IINRAKKAGLTAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTV 314
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 315 RNRYKELAKAL 325
>gi|402877358|ref|XP_003902396.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Papio anubis]
Length = 677
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|383408305|gb|AFH27366.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
gi|384946668|gb|AFI36939.1| transcription factor IIIB 90 kDa subunit isoform 1 [Macaca mulatta]
Length = 677
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|399574277|ref|ZP_10768036.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
gi|399240109|gb|EJN61034.1| transcription initiation factor iib (tfiib) [Halogranum salarium
B-1]
Length = 324
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 112/305 (36%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C + LT E+ G L+C CG+V +AFD+ + R G PT +
Sbjct: 29 CPECDGRLLTDEE-HGELVCGDCGLVVEEANVDRGPEWRAFDSAERDSKSRVGAPTTKMM 87
Query: 50 HVGTAGTGSALNYKEKKIYESNKLIDELT-------------FKLDLTGQRSI-QIKNMI 95
H G + + +++K Y K + F+ + +R++ Q I
Sbjct: 88 H--DKGLSTNIGWQDKDAY--GKTLSSRQRQQMQRLRTWNERFRTRDSKERNLKQALGEI 143
Query: 96 DKITDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEV 133
D++ GL D P + A Y R + E+
Sbjct: 144 DRMASA-LGLPQAVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEI 202
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
ASV D EL R VV L L++ D R F + D + D +
Sbjct: 203 ASVSRVDKMELTRTYRYVVRELKLEIQPADPEQYVPR---------FAS-DLGLSDEAER 252
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ LL A + + +G+ P+ + A + L V V+ + + VT R RYK
Sbjct: 253 RARELLRTAKEAGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSSVANISEVTIRNRYK 312
Query: 254 ELLEA 258
ELLEA
Sbjct: 313 ELLEA 317
>gi|156718014|ref|NP_001096549.1| transcription factor IIIB 50 kDa subunit [Xenopus (Silurana)
tropicalis]
gi|189081455|sp|A4QNR3.1|BRF2_XENTR RecName: Full=Transcription factor IIIB 50 kDa subunit; AltName:
Full=B-related factor 2; Short=BRF-2
gi|141794275|gb|AAI36235.1| brf2 protein [Xenopus (Silurana) tropicalis]
Length = 519
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
I++G C Y+ R + ++ + S++ + +V+ L L +P V + ++
Sbjct: 116 IIVGCCVYITCRQHQWPITMATICSLVYAKKELFASIFLSIVQVLKLDVPSVSLQNLVMS 175
Query: 171 VIRNSRLQGFTNLDE------SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R+ +L F + E LD + ++ V + A + +L TGR P+P++ A
Sbjct: 176 HCRSFKL--FKDSCEVPSHYAEKLDTVSERTVQTVELAYETWLVTGRHPIPIITAAAY-- 231
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRK------------RYKELLEALVKVAQALPWGK 270
+S + A+ + C++ K R +EL L+K++ LPW K
Sbjct: 232 -----ISWQSLLPARRLSCSLSRFCKLSDVDLPPPSAIRLRELQGTLIKLSVYLPWLK 284
>gi|448345333|ref|ZP_21534230.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445635331|gb|ELY88501.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 329
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 111/304 (36%), Gaps = 63/304 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C + L +D +C CG+V +AFD + R G PT +
Sbjct: 35 CPECNGR-LVADDEHAETVCADCGLVVEEGEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 93
Query: 50 HVGTAGTGSALNYKEKKIY---------ESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
H G + + +++K Y E + + + R +K + +I
Sbjct: 94 H--DQGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRNSRERNLKQALGEIDR 151
Query: 101 GEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEVA 134
LG P + + V+ R L+D+ LP + E++
Sbjct: 152 MASALG--LPDNVRETASVIYRRALEDELLPGRSIEGVATSSLYAAARQAGTPRSLDEIS 209
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
+V D E+ R VV L L++ D VS R + L T L R R
Sbjct: 210 AVSRVDKAEVARTYRYVVRELGLEVQPADPVSYVPRFASDLDLSDETEL------RARD- 262
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
LL A + + +G+ P+ + A + L V +V++ + VT R RY E
Sbjct: 263 ---LLTTAKEKGIHSGKSPVGLAAAAVYAAALLTNEQVTQNDVSEVASISEVTIRNRYHE 319
Query: 255 LLEA 258
LLEA
Sbjct: 320 LLEA 323
>gi|308506715|ref|XP_003115540.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
gi|308256075|gb|EFP00028.1| hypothetical protein CRE_18811 [Caenorhabditis remanei]
Length = 306
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 103/286 (36%), Gaps = 50/286 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNYDA-------------QLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNEKSGNDPSRVGAPESPYLSGGDLSTSIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQIK--NMIDKITDG 101
G + + + L N ++++ + LI E++ ++ L R+IQ M ++ D
Sbjct: 81 GGSDSDNTLANAQRKTMNNTDRQMTTAMNLIREMSERVHLP--RNIQESAFRMFKEVLDS 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
G AC Y+ R D E+ ++ E+GR +V + L
Sbjct: 139 GVLRGKNIEAQAAACLYIACRQDGVPRTFKEICAISRVSKKEIGRCFKIIVRNSSTNLEH 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
V R N L N ++ R+ K+ AV L GR P+ + A +
Sbjct: 199 VTSADFMSRFCGNLYL---PNSIQAAATRIAKR-------AVDMDLVAGRSPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP 267
+ + + + VT R+ YK L K A+ P
Sbjct: 249 YMASQASAEKRTAKEIGDIAGAAEVTIRQTYKLLYP---KAAELFP 291
>gi|329764707|ref|ZP_08256302.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329138757|gb|EGG42998.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 288
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 114/290 (39%), Gaps = 55/290 (18%)
Query: 14 EDISGSLICVSCGVVQAFDNYDAQL----YGRDG-------------------PTGIYVH 50
++I+G + C SCGVV A +++ +L + DG PT I
Sbjct: 4 DEITGEIACSSCGVVLAEKSWETRLENSGFTDDGYLNSRVGGRISLKMADRSLPTIIEAQ 63
Query: 51 VGTAGTGSALNYKEKKIY---------------------ESNKLIDELTFKLDLTGQRSI 89
TG +++ + + ++ ++ L+D L KL L
Sbjct: 64 -NKDSTGKSISRQNRILFYRLRMWDRNSRSSSSSTQSFQKAFTLLDGLRAKLGLPESVVE 122
Query: 90 QIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149
Q KI+ + G +++ A +Y+V RL + I +VA N L
Sbjct: 123 QTAYWFRKISAKKILGGRSTVVILCATTYIVCRLTNTPRTIQDVADAGNVKTKHL----Q 178
Query: 150 RVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTT 209
R+ FL +L I + + +RL TN+ E + ++ +L+ A K +TT
Sbjct: 179 RIYRFLVKELDIHPIAYKPDEFV--TRLAKATNVSE----KTQRLAFKILSIAEKKGITT 232
Query: 210 GRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+ PM + AV+ N V +++ + VT R R KE+ + +
Sbjct: 233 SKNPMSMAAAVVHLASLKNKEKVSQLKISEVSGISAVTIRDRSKEITKCI 282
>gi|297298726|ref|XP_001098066.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Macaca
mulatta]
Length = 621
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 94/278 (33%), Gaps = 47/278 (16%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESM-----LDRMRKQGVLLLNCAVKWFLTTGRRPM 214
P +D R G N + SM L RM++ ++ TGRRP
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMTALRLLQRMKRD-----------WMHTGRRPS 226
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ A L+ ++ ++ V V T RKR+
Sbjct: 227 GLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRW 264
>gi|448439368|ref|ZP_21588009.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
gi|445691419|gb|ELZ43610.1| transcription factor TFIIB cyclin-related protein [Halorubrum
saccharovorum DSM 1137]
Length = 326
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 116/299 (38%), Gaps = 43/299 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + T + G +CV CG+V +AFD+ + R G PT +
Sbjct: 31 CPECGGQLATDTE-HGETVCVDCGLVVEEDEIDRGPEWRAFDSKEKDEKSRVGAPTTNMM 89
Query: 50 HVGTAGTGSALNYKEKKIY---------ESNKLIDELTFKLDLTGQRSIQIKNMIDKITD 100
H G + + +++K Y E + + + + +K + +I
Sbjct: 90 H--DKGLSTNIGWQDKDAYGKSLSSRQREKMQRLRTWNERFRTRDSKERNLKQALGEIDR 147
Query: 101 GEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFLN 156
LG P + + V+ R LD+ LP + V +Y R R ++ ++
Sbjct: 148 MASALG--LPDNVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEIS 205
Query: 157 L--KLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAVK 204
++ + +I + V+R +L+ ES + D ++ LL+ A
Sbjct: 206 AVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPRFASDLGLSDEAERRARSLLDTAKS 265
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263
+ +G+ P+ + A + L V V+ + + VT R RY ELLEA VA
Sbjct: 266 QGIHSGKSPVGLAAAAVYAASLLVNEKVTQSEVSDVANISEVTIRNRYHELLEAEDGVA 324
>gi|167044706|gb|ABZ09376.1| putative transcription factor TFIIB repeat protein [uncultured
marine microorganism HF4000_APKG7N23]
Length = 242
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 85/231 (36%), Gaps = 24/231 (10%)
Query: 38 LYGRDGPTGIYVHV--------GTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI 89
+YG + PT V T + SA + + E N+L ++ + + ++
Sbjct: 21 IYGNNVPTKNRSQVYRMRKWQNRTRASNSADRNLAQALNELNRLASKIGLHRQVREEAAM 80
Query: 90 QIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMI 148
+ + D + G G L GAC R + +SE+ E+GR
Sbjct: 81 LYRRAVQDNLVRGRSVEGVAAAALYGAC-----RRCEVPRTLSEITEASRASKKEVGRTY 135
Query: 149 TRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L L L R R L G+ + + +LN A++ LT
Sbjct: 136 RYISRELKLNLQPASPAVYIIRFCRELELPGY----------VESAAINILNQAIEAELT 185
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+GR P V A + + + +A V T VT R RYKEL + L
Sbjct: 186 SGRGPTGVAAAAIYIASVVYDQRKTQKTIADTVGVTEVTIRNRYKELAKNL 236
>gi|409041381|gb|EKM50866.1| hypothetical protein PHACADRAFT_31958 [Phanerochaete carnosa
HHB-10118-sp]
Length = 706
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+ S V+ELG ++V LNL+LP +D + R + L F DE+ R+
Sbjct: 174 LTSAFKVSVFELGHTYLQLVRTLNLRLPPIDPS---HHISRFAALLEFG--DET--PRVA 226
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
L+ + +L GRRP + A L+ +N + + + V T RKR
Sbjct: 227 VDATRLVARMDRDWLARGRRPSGICGAALLLAARMNNFRRSVAEIVQVVKIADSTVRKRL 286
Query: 253 KEL 255
+E
Sbjct: 287 EEF 289
>gi|22035556|ref|NP_001510.2| transcription factor IIIB 90 kDa subunit isoform 1 [Homo sapiens]
gi|397470867|ref|XP_003807033.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
paniscus]
gi|20455319|sp|Q92994.1|TF3B_HUMAN RecName: Full=Transcription factor IIIB 90 kDa subunit;
Short=TFIIIB90; Short=hTFIIIB90; AltName: Full=B-related
factor 1; Short=BRF-1; Short=hBRF; AltName: Full=TAF3B2;
AltName: Full=TATA box-binding protein-associated
factor, RNA polymerase III, subunit 2
gi|1737205|gb|AAB38876.1| TFIIB related factor hBRF [Homo sapiens]
gi|119602316|gb|EAW81910.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_d
[Homo sapiens]
gi|261857828|dbj|BAI45436.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [synthetic construct]
gi|410213426|gb|JAA03932.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410254028|gb|JAA14981.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410306454|gb|JAA31827.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
gi|410332909|gb|JAA35401.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Pan troglodytes]
Length = 677
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|119602312|gb|EAW81906.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_a
[Homo sapiens]
Length = 699
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|395746383|ref|XP_002825219.2| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Pongo abelii]
Length = 677
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|323451551|gb|EGB07428.1| hypothetical protein AURANDRAFT_71825 [Aureococcus anophagefferens]
Length = 1025
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ AC YV+ R + + + + + VL +VY LG + LNL+LP +D R
Sbjct: 529 VVCACLYVMCRREKSAHMLIDFSDVLQVNVYALGATFLKFRRLLNLELPIIDPSLYIHRF 588
Query: 172 IRNSRL----QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
L ++ RM++ ++ TGRRP V A L+
Sbjct: 589 AAKLELGDKCGAVATTALRVVQRMKRD-----------WIETGRRPAGVCAAALLVGARA 637
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+G ++V K + +T KR +
Sbjct: 638 HGFHRTQDDVVKALRVCGMTVAKRLADF 665
>gi|441666045|ref|XP_004091858.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Nomascus leucogenys]
Length = 699
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|405121456|gb|AFR96225.1| transcription factor iiib 70 kd subunit [Cryptococcus neoformans
var. grubii H99]
Length = 684
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 22/270 (8%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYV-HVGTA 54
C CG D+S G+++C CG ++ + + GR G +V + T
Sbjct: 6 CPQCGPDGQLETDLSAGNIVCQRCGQIVEEGILVSEVGFAESAGGRVHVQGTFVSNYATG 65
Query: 55 GTGSALNYKEKKIYESNKL-----IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWF 109
GS ++ E+ K I+ L+ ++ L+ + D +F G
Sbjct: 66 VAGSRGGRGGQQNIENIKAQGASRIEALSRQMHLSSAITRGAIRFFSLAVDNKFNRGRKT 125
Query: 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL--KLPEVDIVSM 167
+I +C Y+ RL + + + + +V+ELG ++ LNL +PEVD
Sbjct: 126 DYIIASCLYLQCRLKKDAHMLIDFSEHKGINVFELGATYLKLRSTLNLLDPMPEVDP--- 182
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
I N R N + L+ W +T GRRP V A L+ +
Sbjct: 183 ---AIYNLRFAHRLNFGAQVNIVAADASRLVRRFRADW-MTQGRRPAGVCGACLIIAGRM 238
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + VA+ V T +KR E +
Sbjct: 239 SNFLRTPDEVAQVVKVHPNTIKKRLLEFAQ 268
>gi|407464443|ref|YP_006775325.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407047631|gb|AFS82383.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 298
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 109/299 (36%), Gaps = 60/299 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV--QAFDNYDAQLYGRDGPTGIYVHVGTA------ 54
C CG TL + S + C +CG+V + D+ + D P I H G
Sbjct: 8 CPRCGKNTLVTDVESSEVFCSNCGIVVEEKVDDGRPERRFADSPV-IKSHTGDKTSLTRH 66
Query: 55 --------------GTGSALNYKEK------KIYES-------------NKLIDELTFKL 81
TG+ L+ K + ++S L++ L K
Sbjct: 67 DRGLSTMINPFNKDSTGNPLSTSMKLSMTRLRKWDSRSRVKTSTDRNLQQALLELLKMKE 126
Query: 82 DLTGQRSIQIKN--MIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
L+ +I K + K + + G L+ A Y R + + EVA+ +
Sbjct: 127 KLSLPDAIAEKASYIYRKALEKKLVRGRSISSLVAASLYAACRESETPRTLREVAATIGI 186
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
E+ + + L+LK+P +D VS ++ N+ L ++ ++ + +L
Sbjct: 187 KRKEISATYRLIFKELDLKMPVIDSVSCIAKIASNAELS----------EKTKRHAIKIL 236
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFV---VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A K G+ PM V + L +E N +++A T VT R R K L
Sbjct: 237 KNAEKQNALAGKHPMGVAASALYLACINLEENRTQ---KDIADAAGITEVTIRNRCKNL 292
>gi|328851991|gb|EGG01140.1| hypothetical protein MELLADRAFT_92647 [Melampsora larici-populina
98AG31]
Length = 649
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 26/271 (9%)
Query: 3 CTSCG-SKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRD-GPTGIY 48
C CG S + + +G+++C +CG V N A L G G T +
Sbjct: 6 CPVCGDSAVIEYDSAAGNVVCTTCGYVVDENTIVSDVTFGESSNGAAVLQGAQLGATDLR 65
Query: 49 VH-VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
VG G A + E+ + + + L+L+ + F +G
Sbjct: 66 ARIVGPRGRPQASAESRAQTLENGLRNLLSMAHGLNLSEVIAESAHRFFTLALSNGFVMG 125
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIV 165
P ++ +C YV R++ + +++ L +V+ +G ++V+ L L ++P +D
Sbjct: 126 RRSPYVLASCIYVACRMNKLPTMLIDISDFLQVNVFIVGATYLKLVKELCLTQIPLID-P 184
Query: 166 SMFERVIRNSRLQGFTNLDESM-LDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
S++ + R + L F E + D R L+ W +TTGRRP + A L+
Sbjct: 185 SLY--ISRFAALLEFGEETEKVAYDATR----LVKRFDHDW-ITTGRRPSGIAGACLLIA 237
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + + + V VT +KR E
Sbjct: 238 ARMNNFKRSVLEIVQVVKIADVTIKKRLDEF 268
>gi|448358672|ref|ZP_21547349.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445645254|gb|ELY98260.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 329
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 122/312 (39%), Gaps = 65/312 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 34 CPECGGR-LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 93 HDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 149
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L++ LP + E+
Sbjct: 150 RMASALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V D EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETER 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL+ A K + +G+ P+ + A + L V V++ + VT R RYK
Sbjct: 258 MARELLDSARKEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYK 317
Query: 254 ELLEALVKVAQA 265
ELLEA A A
Sbjct: 318 ELLEASDTAAPA 329
>gi|390469562|ref|XP_003734142.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 90 kDa
subunit [Callithrix jacchus]
Length = 681
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|385304224|gb|EIF48251.1| brf1p [Dekkera bruxellensis AWRI1499]
Length = 420
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 62/324 (19%), Positives = 124/324 (38%), Gaps = 48/324 (14%)
Query: 1 MPCTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQLYGRDGPTG-----------I 47
+ C CG+ TRE S L C CG V + +++ + G
Sbjct: 9 LRCKVCGNTEFTREYHTASSDLACTKCGTVLEENPIVSEVTFAETSNGGAMIQGSFVGSD 68
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
H +L+ +E+ + K I + L + S F G
Sbjct: 69 QAHANFGNNRGSLDSREQTLANGRKRIKNVASALGIQDYISDAAYQWFQLALTNNFVQGR 128
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-LPEVDIVS 166
++ AC Y+ R + + + +S L V+ +G ++V+ L++ LP +D S
Sbjct: 129 RSQNVVAACLYIACRKEKTHHMLIDFSSRLQVSVFAVGATFLKMVKALHITDLPLID-PS 187
Query: 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW-------FLTTGRRPMPVVVA 219
+F +Q F + LD R + + ++N A+K +L GRRP + A
Sbjct: 188 LF--------IQHFAD----KLDFGRAK-LKVINDALKLARRMDDNWLYEGRRPSGIAGA 234
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLK 279
++ +N + H T +KR E + + +++++ K
Sbjct: 235 CILLAARMNNFHRTHSEIVAVSHVGXSTIQKRLWEFQKT---------YSSNLSIEKFRK 285
Query: 280 N----APFVMNYMEMKSMEKRKEE 299
N A ++++ +++EK++++
Sbjct: 286 NEKVRASLPPSFIKDRTIEKKRKK 309
>gi|407465789|ref|YP_006776671.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
gi|407048977|gb|AFS83729.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus sp. AR2]
Length = 306
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 55/277 (19%)
Query: 18 GSLICVSCGVV------------QAFDNYDAQLYGRDGPT--------GIYVHVGTA--G 55
G ++C CG++ + + D R GP G+ +GT
Sbjct: 30 GEIVCGGCGLILLQNMADASYENNGYTSEDFMKMSRTGPASSLTMNDRGLSTVIGTNKDS 89
Query: 56 TGSALNYKEKKIYESNKL---------------------IDELTFKLDLTGQRSIQIKNM 94
TG AL+ K K YE N+L + + KL ++ +
Sbjct: 90 TGKALSSKTK--YEFNRLRTWDQRSKSRKTASLSKAFTLLHGMKTKLGISDNVVENAAYI 147
Query: 95 IDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154
K+ + G LI A Y R ++ + ++A N + L R + +++
Sbjct: 148 YRKVVSAKLTRGRTMASLISASLYAACRENNIPRTLDDIADAGNVERRILSRDLRTIIKK 207
Query: 155 LNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214
L + L + D S ++ N L+ ++ ++ +L K +T G+ P+
Sbjct: 208 LGMNLNQYDTTSFISKISNNMNLK----------EKTKRDAFEILRRCEKEQITAGKHPV 257
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
A L +NG + + + E + VT R R
Sbjct: 258 AQAAASLYISCIMNGEKISQKKFSVESGVSDVTIRNR 294
>gi|433421758|ref|ZP_20405837.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
gi|432198809|gb|ELK55052.1| transcription initiation factor TFB [Haloferax sp. BAB2207]
Length = 318
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 44/295 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CGS++L + G +C CG+V +AF++ + R G PT
Sbjct: 22 CPECGSESLVSDTEHGETVCDDCGLVVEEDEIDHGPEWRAFNSSEKDEKSRVGAPTTNMM 81
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 82 HDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNER-FRTRDSKERN--LKQALGEID 138
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVVEF 154
LG P + + V+ R LDD LP + V +Y RM + E
Sbjct: 139 RMASALG--LPDNVRETASVIYRRALDDDLLPGRSIEGVATSALYAAARMAGTPRSLDEI 196
Query: 155 LNLKLPEVD-IVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ E D I + V+R L+ E + D +Q LL A
Sbjct: 197 TSVSRVEKDEIARTYRYVVRELSLEIKPADPEQYVPRFASELGLSDEAERQARQLLRDAK 256
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ + +G+ P+ + A + L V+ + VT R RY ELLEA
Sbjct: 257 ETGIHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSDVADISEVTIRNRYHELLEA 311
>gi|115391595|ref|XP_001213302.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194226|gb|EAU35926.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 756
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 116/276 (42%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 60 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSH 117
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G A+ +E ++ I++L+ L++ + +++ + K+ G F
Sbjct: 118 VRSFGPGFQRGGAMESREITEQNGSRYINQLSRALNVP-ESAMKAAGQVFKLAVGLNFIQ 176
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + ++A VL +V++LGR +++ L L +
Sbjct: 177 GRRTKTVAAVCLYIACRRQDGNTVMLIDLADVLMINVFKLGRTYKALLDELRLGGNVFLM 236
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + G + + ++ + V ++ + ++TTGRRP + A
Sbjct: 237 NPIDPESLIYRFAKQLEF-GPSTM------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 289
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 290 ALILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 325
>gi|4262235|gb|AAD14528.1| putative transcription factor [Arabidopsis thaliana]
Length = 257
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL---- 155
D F G ++ +C Y+ R SL + +S L VYELG + ++ E L
Sbjct: 2 DQNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCEMLYLVQ 61
Query: 156 NLKLPEVDIVSMFERVIRNSRLQG-------FTNLDESMLDRMRKQGVLLLNCAVKWFLT 208
N E+ S+F NS L+G N ++++ M++ ++
Sbjct: 62 NKNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRD-----------WIQ 110
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
TGR+P + A + +G+ ++AK VH T KR E
Sbjct: 111 TGRKPSGICGAAIYMAALSHGIMYSRADIAKVVHMCEATITKRLNEF 157
>gi|76802797|ref|YP_330892.1| transcription initiation factor TFB 5 [Natronomonas pharaonis DSM
2160]
gi|76558662|emb|CAI50254.1| transcription initiation factor TFB [Natronomonas pharaonis DSM
2160]
Length = 327
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 123/305 (40%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C ++ L + G +C CG+V +AFD+ + R G PT
Sbjct: 33 CPECDAR-LQADTEHGETVCSDCGLVVEEDEIDRGPEWRAFDSAEKDEKSRVGAPTTNMM 91
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 92 HDKGLSTNIGWQDKDAYGNSLSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEIE 148
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L + LP + EV
Sbjct: 149 RMASALG--LPENVRETASVIYRRALSEDLLPGRSIEGVATAALYAAARQANVPRSLDEV 206
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V D EL R ++ LNL++ D S R + ++LD S D + +
Sbjct: 207 EHVSRVDRMELTRTYRYIIRELNLEVQPADPESYIPRFV--------SDLDRS--DEVER 256
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ L++ A + + +G+ P+ + A + L V V++ + VT R RYK
Sbjct: 257 RARQLIDNAREAGVISGKSPVGLAAAAVYAASLLCNEKVTQTEVSEVAEISEVTIRNRYK 316
Query: 254 ELLEA 258
ELLEA
Sbjct: 317 ELLEA 321
>gi|329764985|ref|ZP_08256572.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795852|ref|ZP_10379216.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum limnia BG20]
gi|329138522|gb|EGG42771.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 305
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 62/301 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C +L +D++G C CG V ++F + R G PT + +
Sbjct: 11 CPRCAKNSLLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNKARAGAPTSLTM 70
Query: 50 H----------VGTAGTGSALNYKEK-------------KIYES------------NKLI 74
H + +G L K +++ES N+L
Sbjct: 71 HDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNRLK 130
Query: 75 DELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVA 134
D+L+ + + + + I+K + G +I + Y R + +++V
Sbjct: 131 DKLSLSDAVIEKAAYIYRKAIEK----KLVRGRSISAMIASALYAACRDTETPRTLNDVG 186
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
N ++ R + L LK+P VD + R+ SR+ G T ++ ++
Sbjct: 187 EAANLKKKDIARCYRLLHRELELKMPVVDPIQCLARIA--SRI-GIT-------EKTKRY 236
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+L + + + G+ PM + A L NG + ++A+ T VT R RYK
Sbjct: 237 AAKVLKISQEHEESAGKDPMGLAAAALYLACVKNGEDITQRDIAEAASVTEVTIRNRYKG 296
Query: 255 L 255
L
Sbjct: 297 L 297
>gi|452206769|ref|YP_007486891.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452082869|emb|CCQ36145.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/305 (22%), Positives = 118/305 (38%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C ++ L + G +C CG+V +AFD+ + R G PT
Sbjct: 30 CPECDAR-LEADSEHGETVCTECGLVVEEDEIDRGPEWRAFDSAEKDQKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G L+ ++++ + + +E F+ + +R+ +K + +I
Sbjct: 89 HDKGLSTNIGWQDKDAYGRQLSTRQRQKMQRLRTWNE-RFRTRDSKERN--LKQALGEIE 145
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LDD LP + E+
Sbjct: 146 RMASALG--LPENVRETASVIYRRALDDNLLPGRSIEGVSTAALYTAARQAGIPRSLDEI 203
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V D EL R ++ LNL++ D S R + D + D + +
Sbjct: 204 ERVSRVDRMELTRTYRYIIRELNLEVKPADPESYIPRFV----------SDLGLSDEVER 253
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ L+ A L +G+ P+ + A + L V +V++ + VT R RYK
Sbjct: 254 RARELIEAARGDGLLSGKSPVGLAAAAVYAAALLCNEKVTQNDVSEVADISEVTIRNRYK 313
Query: 254 ELLEA 258
ELLEA
Sbjct: 314 ELLEA 318
>gi|119491136|ref|XP_001263190.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
gi|119411350|gb|EAW21293.1| transcription factor TFIIIB complex subunit Brf1, putative
[Neosartorya fischeri NRRL 181]
Length = 752
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 61 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTH 118
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G A+ +E + I++L+ L++ + +++ + K+ G F
Sbjct: 119 VRSYGPGFQRGGAMESREITEQNGTRYINQLSRALNIP-ESAMKAAGQVFKLAVGLNFIQ 177
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 178 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLM 237
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 238 NPIDPESLIYRFAKQLEFGTATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 290
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 291 ALILAARMNNFRRTVREVVYVVKVTEITINQRLNEF 326
>gi|448590590|ref|ZP_21650355.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445734086|gb|ELZ85645.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 315
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 123/305 (40%), Gaps = 45/305 (14%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT-- 45
+ C C S L + G +C CG+V +AF++ + R G PT
Sbjct: 17 LECPECESDALVSDTEHGETVCDDCGLVVEENEIDHGPEWRAFNSSEKNQKSRVGAPTTN 76
Query: 46 -----GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK 97
G+ ++G G +L+ ++++ + + +E F+ + +R+ +K + +
Sbjct: 77 MMHDKGLSTNIGWQNKDAYGRSLSSRQREKMQRLRTWNE-RFRTRDSKERN--LKQALGE 133
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMI---TRVV 152
I LG P + + V+ R L+D LP + V +Y RM +
Sbjct: 134 IDRMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATSALYAAARMADTPRSLD 191
Query: 153 EFLNLKLPEVD-IVSMFERVIRNSRLQGFTNLDESMLDRM----------RKQGVLLLNC 201
E ++ E D I + V+R +L+ E + R ++ LL
Sbjct: 192 EITSVSRVEKDEIARTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEPERRARQLLKN 251
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + + +G+ P+ + A + L V V++ + + VT R RY ELLEA K
Sbjct: 252 AKEQSVHSGKSPVGLAAAAVYAASLLTNEKVTQNEVSEVANISEVTIRNRYHELLEAEEK 311
Query: 262 VAQAL 266
AQ L
Sbjct: 312 -AQVL 315
>gi|73668919|ref|YP_304934.1| transcription initiation factor IIB [Methanosarcina barkeri str.
Fusaro]
gi|72396081|gb|AAZ70354.1| Transcription initiation factor IIB (TFIIB) [Methanosarcina barkeri
str. Fusaro]
Length = 337
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|20089499|ref|NP_615574.1| transcription initiation factor IIB [Methanosarcina acetivorans
C2A]
gi|24212485|sp|Q8TT29.1|TF2B_METAC RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|19914407|gb|AAM04054.1| archaeal transcription factor B [Methanosarcina acetivorans C2A]
Length = 337
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|297789078|ref|XP_002862547.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297308133|gb|EFH38805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 420
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 105/272 (38%), Gaps = 30/272 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLY------GRDGPTGIYVHVGTAGT 56
C CG G+L C CG + N+ Q+ G+ +G V +G
Sbjct: 4 CNHCGKNVPGIRPFDGALSCDLCGRILENFNFSTQVTFVKNAAGQSQASGNIVKSVQSGM 63
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTG---QRS---IQIKNMIDKITDGEFGLGDWFP 110
S+ +E++I + IDEL D G R + N D F G
Sbjct: 64 SSS---RERRIRIA---IDELMNLRDALGIGDDRDDVIVMASNFFRTALDLNFTKGRRSE 117
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+++ +C Y+ R ++ + +S L VYELG + + + L + +E+
Sbjct: 118 LVLSSCLYLSCRQLKFAVLLIHFSSYLRVSVYELGSVYLQFCDMLYITENH-----NYEK 172
Query: 171 VIRNS-RLQGFTNLDESMLDRMRKQGVL------LLNCAVKWFLTTGRRPMPVVVAVLVF 223
++ S + FTN+ R + G + ++ + ++ TGR+P + A L
Sbjct: 173 LVDPSIFIPRFTNMLLKGAHRKKVVGTVVDTATDIIASMKRDWMQTGRKPSGICGAALYT 232
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+G+ ++ K VH T KR E
Sbjct: 233 AALSHGIKCSKTDIVKIVHICEATLTKRLIEF 264
>gi|407462691|ref|YP_006774008.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407046313|gb|AFS81066.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 323
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/310 (18%), Positives = 118/310 (38%), Gaps = 54/310 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV---QAFD-NYDAQLY--------GRDGP------ 44
C + K+ + +G +IC CG+V +A D N D++ + R+GP
Sbjct: 24 CLADSHKSPVTDVNAGEIICSDCGIVLEERAVDRNNDSKTFTKEDYLNTARNGPPTKISI 83
Query: 45 ----------------TGIYVHVGTA---------GTGSALNYKEKKIYESNKLIDELTF 79
G +H + S N KE+ + ++ ++D +
Sbjct: 84 SDMSSSSIISKKNFDAVGKKMHSNNIRHFSRMRFWDSRSKSNNKEQNLVKAFTVLDAYSN 143
Query: 80 KLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139
KL++ + K D + G+ P ++ A Y + + E++ + N
Sbjct: 144 KLNMPENAKEHAAYIYRKAVDKKIIRGNSIPSMMAASVYASCKQLGIPRSVDEISKITNI 203
Query: 140 DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLL 199
+ +L R R+V+ L +K+ I + + S + + L +L +++ + +
Sbjct: 204 NRKKLLRSYKRLVKKLEIKVDSTGINYVSKISSSLSVSEKTSRLANKILHDAKQEKIHV- 262
Query: 200 NCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
G+ P+ V A + +G V I +A++ + + VT RK K L
Sbjct: 263 ----------GKNPIGVTAASIYLSAINHGEHVPIARIARKTNISTVTIRKIIKMLRPFA 312
Query: 260 VKVAQALPWG 269
K +++ G
Sbjct: 313 AKYIKSIDIG 322
>gi|238489759|ref|XP_002376117.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
gi|220698505|gb|EED54845.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus flavus NRRL3357]
Length = 1098
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 104/275 (37%), Gaps = 30/275 (10%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G + H
Sbjct: 61 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTH 118
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
V + G G +E N+ I++L L++ S + F G
Sbjct: 119 VRSYGPGFQRGGGAESREITEQNGNRYINQLARALNIPESASKAAGQVFKLAVGLNFIQG 178
Query: 107 DWFPILIGACSYVVMRLDD-KSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R D ++ + + A VL +V++LGR ++E L L +
Sbjct: 179 RRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLMN 238
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 239 PIDPESLIYRFAKQLEFGAATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGAA 291
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 292 LILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 326
>gi|358368039|dbj|GAA84657.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
kawachii IFO 4308]
Length = 752
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 113/275 (41%), Gaps = 31/275 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 60 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSH 117
Query: 51 VGTAGTGSALNYKE-KKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLG 106
V + G G E ++I E N + I +L+ L++ + +++ + K+ G F G
Sbjct: 118 VRSYGPGFQRGGAESREITEQNGNRYITQLSRALNIP-ESAMKAAGQVFKLAVGLNFIQG 176
Query: 107 DWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 177 RRTKTVAAVCLYIACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMN 236
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 237 PIDPESLIYRFAKQLEFGSATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGAA 289
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 290 LILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 324
>gi|291409110|ref|XP_002720833.1| PREDICTED: RNA polymerase III transcription initiation factor BRF2
isoform 2 [Oryctolagus cuniculus]
Length = 378
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSSTYLQMVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASASVPAKYVEDKEKMLARTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
S ++ ++A+ V R +ELL L+++A L W + + + ++V+K
Sbjct: 236 SLRPSGRLTCSLARFCKLASVDLPYPASSRLQELLAVLLRMAGQLAWLQVLKLDKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + R RDG
Sbjct: 296 H---IGDLLQHRHTLVRAAFRDG 315
>gi|159127363|gb|EDP52478.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus A1163]
Length = 749
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 54 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTH 111
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G A+ +E + I++L+ L++ + +++ + K+ G F
Sbjct: 112 VRSYGPGFQRGGAMESREITEQNGTRYINQLSRALNIP-ESAMKAAGQVFKLAVGLNFIQ 170
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 171 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMVNVFKLGRTYKALLDELRLGGNVFLM 230
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 231 NPIDPESLIYRFAKQLEFGTATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 283
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 284 ALILAARMNNFRRTVREVVYVVKVTEITINQRLNEF 319
>gi|452208372|ref|YP_007488494.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
gi|452084472|emb|CCQ37817.1| transcription initiation factor TFB [Natronomonas moolapensis
8.8.11]
Length = 330
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+ A Y RL++ + +VA+V D E+ R + + L L++ D + R
Sbjct: 187 MATAALYAGSRLENAPRTLDDVAAVSRVDKIEIERTYRYLADELELEMTPTDPEAYVARF 246
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
S L D ++ L+ AV+ + +GR P+ + + L +L
Sbjct: 247 A--SEL--------GCSDETERRSRELIQAAVEAGVHSGRNPVGIAASALYAAAKLTNQD 296
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263
V +++A+ + + VT R RY E+LEA +V+
Sbjct: 297 VIQDDLAEIANVSKVTIRNRYTEILEAADEVS 328
>gi|409096766|ref|ZP_11216790.1| transcription initiation factor IIB [Thermococcus zilligii AN1]
Length = 303
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 62/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C +CGS + G C CG V +AF+ + R GP +
Sbjct: 7 CPNCGSTEFFYDRSRGEYYCAGCGQVLEWNIVDEEPEWRAFEPEQREKRARTGPP-MTNM 65
Query: 51 VGTAGTGSALNYKEKKIYES-------NKL--------------------------IDEL 77
+ G + +++++K I+ + NK+ +D +
Sbjct: 66 IHDKGLSTDIDWRDKDIHGNPITGVYRNKMRRLRMWQRRMRINDAAERNLAFALSELDRM 125
Query: 78 TFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
++ L + Q + K + G ++ A Y R++ + E+A
Sbjct: 126 AVQMGLPKRVKEQAAVLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIARFS 185
Query: 138 NCDVYELGRMITRVVEFLNLKL---PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+GR + L L L +D V F + + R +K+
Sbjct: 186 KVTKKEIGRSYRFMARGLGLNLLPTSPIDYVDRFGDAL-------------GVSARTKKR 232
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+L A++ +T+G+ P + A L L G VA+ + T VT R RYKE
Sbjct: 233 AREILQEAIRVGITSGKGPTGLAAAALYLASLLEGEKKTQREVAEVANVTEVTVRNRYKE 292
Query: 255 LLEAL 259
L+E L
Sbjct: 293 LVEKL 297
>gi|448306111|ref|ZP_21496021.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
gi|445598749|gb|ELY52801.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
bangense JCM 10635]
Length = 325
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 116/302 (38%), Gaps = 59/302 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + +T E+ +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGRLITDEE-HAETVCTDCGLVVEEDEVDRGPEWRAFDASEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQNKDAYGRALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R I ++LD + D +
Sbjct: 207 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFI--------SDLD--LSDETERMAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V +V+ + VT R RYKELL
Sbjct: 257 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKELL 316
Query: 257 EA 258
EA
Sbjct: 317 EA 318
>gi|21227874|ref|NP_633796.1| transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452210347|ref|YP_007490461.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
gi|332321738|sp|P0CW15.1|TF2B_METMA RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|332321739|sp|P0CW14.1|TF2B_METMZ RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|14586422|emb|CAC42919.1| transcription factor B (TFB) [Methanosarcina mazei]
gi|20906289|gb|AAM31468.1| Transcription initiation factor IIB [Methanosarcina mazei Go1]
gi|452100249|gb|AGF97189.1| Transcription initiation factor B [Methanosarcina mazei Tuc01]
Length = 337
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>gi|351699791|gb|EHB02710.1| Transcription factor IIIB 50 kDa subunit [Heterocephalus glaber]
Length = 419
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSGAYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEQMLSRALQLVELASETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ ++ + K + + R +EL+ L+++A+ L W
Sbjct: 236 SLRPSDRLTCSLAQFCKMANVDLPYPAASRLQELVAILLRMAEQLAW 282
>gi|448528868|ref|ZP_21620248.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
gi|445710316|gb|ELZ62135.1| transcription factor TFIIB cyclin-related protein [Halorubrum
hochstenium ATCC 700873]
Length = 354
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 10/134 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL + D
Sbjct: 230 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRLD--------LSD 279
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
++ LL A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 280 ETERRARELLADAASAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIR 339
Query: 250 KRYKELLEALVKVA 263
RYKELLEA VA
Sbjct: 340 NRYKELLEASGDVA 353
>gi|156845831|ref|XP_001645805.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
gi|156116473|gb|EDO17947.1| hypothetical protein Kpol_1010p65 [Vanderwaltozyma polyspora DSM
70294]
Length = 577
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 29/272 (10%)
Query: 3 CTSCGSKTLTRE--DISGSLICVSCGVVQAFDNYDAQLYGRDGPTGI------------- 47
C C RE + + L+C CG+V + +++ + +G
Sbjct: 5 CKGCKGTDFIRETSNANNDLVCTGCGMVSEDNPIVSEVTFGESSSGAAVVQGSFISGDQA 64
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G+ G SAL +E I + + + ++ L + + F G
Sbjct: 65 HAAFGSHGGSSALESRETTINNARRKLRAVSHALGIPEYITDAAHQWYKLALHQNFVQGR 124
Query: 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL-KLPEVDIVS 166
+I +C Y+ R + + + +S L VY +G ++V+ L++ LP D S
Sbjct: 125 RSQNVIASCLYIACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMVKRLHITNLPLAD-PS 183
Query: 167 MFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
+F +Q F +L + + ++ K V L K ++ GRRP + A ++
Sbjct: 184 LF--------IQHFAEKLDLGDKKI-KVVKDAVKLAQRMSKDWMYEGRRPAGIAGACILL 234
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + + H T ++R E
Sbjct: 235 ACRMNNLRRTHSEIVAVSHVAEETLQQRLNEF 266
>gi|407463400|ref|YP_006774717.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
gi|407047022|gb|AFS81775.1| transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosopumilus koreensis AR1]
Length = 306
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 55/277 (19%)
Query: 18 GSLICVSCGVV------------QAFDNYDAQLYGRDGPT--------GIYVHVGTA--G 55
G + C CG++ + D R GP+ G+ +G
Sbjct: 30 GEIFCGGCGLILVQNLADTSYENNGYTQEDFMKQARTGPSTSLTMFDKGLSTVIGNNKDS 89
Query: 56 TGSALNYKEKKIYESNKLI---------DELTFKLDLTGQRSIQIK-----NMID----- 96
+G+AL+ K K YE N+L T T S++ K N+++
Sbjct: 90 SGNALSSKTK--YEFNRLRTWDQRSKSRKTATLSKAFTLLHSMKTKLGIPDNVVENAAYI 147
Query: 97 --KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154
KI + G LI A Y R ++ + ++A+ N + L R + +++
Sbjct: 148 YRKIVSAKLTRGRTMASLISASLYASCRENNIPRTLDDIANAGNVERRILSRDLRTIIKK 207
Query: 155 LNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214
L L L + D S ++ N L+ ++ ++ +L K +T G+ P+
Sbjct: 208 LGLNLNQYDTSSFISKISNNMNLK----------EKTKRGAFEILKLCEKEQITAGKHPV 257
Query: 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
A L +NG + + + E + VT R R
Sbjct: 258 AQAAASLYISCIMNGEKISQKKFSVEAGVSDVTIRNR 294
>gi|374325545|ref|YP_005083742.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
gi|356640811|gb|AET31490.1| Transcription factor TFIIB [Pyrobaculum sp. 1860]
Length = 333
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D + R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPILYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVIKSAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>gi|341901067|gb|EGT57002.1| hypothetical protein CAEBREN_14440 [Caenorhabditis brenneri]
Length = 306
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 100/274 (36%), Gaps = 47/274 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNY-------------DAQLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDG 101
G + + ++L N ++++ + LI E++ ++ L R+IQ + + D
Sbjct: 81 GGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLP--RNIQENASRIFKDVLDS 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
G AC Y+ R D E+ +V E+GR ++ L L +
Sbjct: 139 RALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIIRNLETNLEQ 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N L N ++ R+ K+ AV L GR P+ + A +
Sbjct: 199 ITSADFMSRFCGNLYL---PNSIQAAATRIAKR-------AVDMDLVAGRTPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + + + +T R+ YK L
Sbjct: 249 YMASQASSEKRSAKEIGDVAGAAEITVRQTYKLL 282
>gi|194226441|ref|XP_001493779.2| PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIB 50 kDa
subunit [Equus caballus]
Length = 421
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + + + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPVTMGTLCTLLYADLDAFSGTYMQIVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R ++ L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFQPSPSVPAKYVEDKEKMLSRTQQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGK--DVTVK 275
+ + ++ + K + + R +ELL L+++A+ L W + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLNKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + RK RDG
Sbjct: 292 SVVKH---IGDLLQHRRTLVRKVFRDG 315
>gi|448401933|ref|ZP_21571844.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
gi|445665991|gb|ELZ18662.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
limicola JCM 13563]
Length = 325
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 117/309 (37%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGR-LVSDDEHAETVCTECGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 207 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 257 ELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 316
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 317 EASDTAAPA 325
>gi|448720890|ref|ZP_21703484.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
gi|445780503|gb|EMA31385.1| transcription initiation factor IIB [Halobiforma nitratireducens
JCM 10879]
Length = 355
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 10/151 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E+++V D EL R V+ L L++ D S R +
Sbjct: 215 ASLYAAARQAGTPRSLDEISAVSRVDKMELTRTYRYVIRELGLEVQPADPESYVPRFV-- 272
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
++LD + D + LL+ A + + +G+ P+ + A + L V
Sbjct: 273 ------SDLD--LSDETERMARELLDSAREEGVHSGKSPVGLAAAGVYAAALLTNEKVTQ 324
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265
V++ + VT R RYKELLEA A A
Sbjct: 325 NEVSEVASISEVTIRNRYKELLEASDSAAPA 355
>gi|302772278|ref|XP_002969557.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
gi|300163033|gb|EFJ29645.1| hypothetical protein SELMODRAFT_410325 [Selaginella moellendorffii]
Length = 507
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 27/271 (9%)
Query: 3 CTSCGSKTLT-REDISGSLICVSCGVVQAFDNY------------DAQLYGRDGPTGIYV 49
C+ C + R+DI+G C CG V + Y +QL G +G Y
Sbjct: 4 CSYCAKDQIADRDDINGFTCCTGCGRVLDDNVYSSEPTFCKGSAGQSQLVGNIIRSGQYS 63
Query: 50 HVGT--AGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI--QIKNMIDKITDGEFGL 105
+G+ +G EK + I ++ L ++G+ + + F
Sbjct: 64 RIGSDPGYSGFQSASHEKTLERGRNEIGDIADSLSISGRDDAVGAAHRLYVLAVEKSFTK 123
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G + AC Y+V R ++K + + + L +V + R+ E + P VD
Sbjct: 124 GRRTQQVAAACLYIVCRQENKPYLLIDFSDSLQVNV------LLRLEEHPIMAKP-VDPS 176
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW-FLTTGRRPMPVVVAVLVFV 224
R RL G +N L + ++K ++ TGR+P V A L
Sbjct: 177 LFIHRF--TDRLLGLSNGSFGRKHHAIANTALRIVASMKRDWIQTGRKPSGVCGAALFVS 234
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+++G +V VH T KR E
Sbjct: 235 AQIHGFECSKSDVVSVVHVCGDTLTKRLVEF 265
>gi|448361954|ref|ZP_21550567.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
gi|445649634|gb|ELZ02571.1| transcription factor TFIIB cyclin-like protein [Natrialba asiatica
DSM 12278]
Length = 329
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 119/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + +T +D +C CG+V +AFD + R G PT
Sbjct: 34 CPECGGRLIT-DDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 93 HDQGLSTNIGWQNKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 151
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 152 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R ++ L L++ D R + ++LD + D +
Sbjct: 211 SRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 260
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 261 ELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 320
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 321 EASDTAAPA 329
>gi|379003108|ref|YP_005258780.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
gi|375158561|gb|AFA38173.1| Transcription initiation factor TFIIIB, Brf1 subunit/Transcription
initiation factor TFIIB [Pyrobaculum oguniense TE7]
Length = 348
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G
Sbjct: 221 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG--------- 271
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 272 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 330
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 331 RNRYKELAKAL 341
>gi|374635845|ref|ZP_09707435.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
gi|373560981|gb|EHP87227.1| Transcription factor TFIIB cyclin-related protein [Methanotorris
formicicus Mc-S-70]
Length = 821
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E++ D E+GR + L +KL + + R L G
Sbjct: 696 LDEISEASRVDRKEIGRTYRFLSRELGIKLAPTNPIDYVPRFASELGLPG---------- 745
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A + LT+GR P V A + L G +VA+ T VT R
Sbjct: 746 EVESKAIAILQKAAEKGLTSGRGPTGVAAAAIYIASVLLGNRRTQRDVAEVAGVTEVTIR 805
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 806 NRYKELTEHL 815
>gi|448608903|ref|ZP_21660182.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
gi|445747280|gb|ELZ98736.1| transcription initiation factor TFB [Haloferax mucosum ATCC
BAA-1512]
Length = 331
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 113/301 (37%), Gaps = 59/301 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L +D G +C CG+V +AFD + R G PT
Sbjct: 36 CPEC-SGNLIHDDDHGETVCQECGLVVEDTIVDRGPEWRAFDASERDSKSRVGAPTTKMM 94
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 95 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 153
Query: 99 TDGEFGL-----------------GDWFP-----ILIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R+ D + E+ V
Sbjct: 154 ASA-LGLPENVRETASVIYRRALNDDLLPGRSIEGVATAALYGAARMADTPRSLDELEKV 212
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R +V L L++ D R + LD + D +Q
Sbjct: 213 SRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFA--------SELD--LSDEAERQAR 262
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 263 TLLRDAKETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVADISEVTIRNRYKELL 322
Query: 257 E 257
E
Sbjct: 323 E 323
>gi|395847357|ref|XP_003796345.1| PREDICTED: transcription factor IIIB 50 kDa subunit [Otolemur
garnettii]
Length = 414
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLDRMRK---QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ K + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEEKEKLLSRTLQLVELADETWLVTGRHPLPVITAASFLAWQ 235
Query: 227 LNGVSVKIENVAKEVHCTVVT------CRKRYKELLEALVKVAQALPWGKDVTV--KNVL 278
S ++ + C + R +ELL L+++A+ L W + + + ++V+
Sbjct: 236 SLQPSHRLRCSLAQF-CKLANIDLPHPASSRLQELLGVLLRMAEQLAWLQVLKLDKRSVV 294
Query: 279 KNAPFVMNYMEMKSMEKRKEERDG 302
K ++ + ++ + R RDG
Sbjct: 295 K---YIGDLLQHRHTLVRTAFRDG 315
>gi|15228267|ref|NP_187644.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
gi|21363045|sp|Q9SS44.1|TF2B2_ARATH RecName: Full=Transcription initiation factor IIB-2; AltName:
Full=General transcription factor TFIIB-2;
Short=AtTFIIB2
gi|6056193|gb|AAF02810.1|AC009400_6 transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|15215784|gb|AAK91437.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|16974427|gb|AAL31139.1| AT3g10330/F14P13_7 [Arabidopsis thaliana]
gi|21593436|gb|AAM65403.1| transcription initiation factor IIB (TFIIB) [Arabidopsis thaliana]
gi|39545880|gb|AAR28003.1| TFIIB2 [Arabidopsis thaliana]
gi|332641371|gb|AEE74892.1| transcription initiation factor IIB-2 [Arabidopsis thaliana]
Length = 312
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 72 KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPIS 131
K I + +L L + + ++ D + G L+ AC Y+ R +DK +
Sbjct: 110 KTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
Query: 132 EVASVLN-CDVYELGRMITRVVEFLNL---KLPEVDIVSMFERVIRNSRLQGFTNLD-ES 186
E+ SV N E+GR +V+ L L +L E+ + + + R G TN ++
Sbjct: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKA 229
Query: 187 MLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVV 246
+ ++K + R P+ + AV+ + +L+ + +++
Sbjct: 230 AQESVQKSEEFDIR----------RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEG 279
Query: 247 TCRKRYKELLEALVKVAQALPWGKDVTVKNV 277
T R YK+L L K+ A + K+ +KN+
Sbjct: 280 TIRNSYKDLYPHLSKIIPAW-YAKEEDLKNL 309
>gi|448448382|ref|ZP_21591195.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
gi|445814798|gb|EMA64756.1| transcription factor TFIIB cyclin-related protein [Halorubrum
litoreum JCM 13561]
Length = 380
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL +L E
Sbjct: 256 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRL----DLSEETER 309
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
R R+ LL A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 310 RARE----LLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIR 365
Query: 250 KRYKELLEALVKVA 263
RYKELLEA V+
Sbjct: 366 NRYKELLEASGTVS 379
>gi|350634822|gb|EHA23184.1| hypothetical protein ASPNIDRAFT_52343 [Aspergillus niger ATCC 1015]
Length = 745
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 31/275 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 53 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSH 110
Query: 51 VGTAGTGSALNYKE-KKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLG 106
V + G G E ++I E N + I +L+ L + + +++ + K+ G F G
Sbjct: 111 VRSYGPGFQRGGAESREITEQNGNRYITQLSRALTIP-ESAMKAAGQVFKLAVGLNFIQG 169
Query: 107 DWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 170 RRTKTVAAVCLYIACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMN 229
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 230 PIDPESLIYRFAKQLEFGSATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGAA 282
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 283 LILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 317
>gi|317027053|ref|XP_001400004.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus niger
CBS 513.88]
Length = 742
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 31/275 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 60 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSH 117
Query: 51 VGTAGTGSALNYKE-KKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLG 106
V + G G E ++I E N + I +L+ L + + +++ + K+ G F G
Sbjct: 118 VRSYGPGFQRGGAESREITEQNGNRYITQLSRALTIP-ESAMKAAGQVFKLAVGLNFIQG 176
Query: 107 DWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 177 RRTKTVAAVCLYIACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMN 236
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 237 PIDPESLIYRFAKQLEFGSATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGAA 289
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 290 LILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 324
>gi|134056932|emb|CAK44279.1| unnamed protein product [Aspergillus niger]
Length = 752
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 31/275 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 60 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGESSSGAAVVQGTFVGEDQSH 117
Query: 51 VGTAGTGSALNYKE-KKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLG 106
V + G G E ++I E N + I +L+ L + + +++ + K+ G F G
Sbjct: 118 VRSYGPGFQRGGAESREITEQNGNRYITQLSRALTIP-ESAMKAAGQVFKLAVGLNFIQG 176
Query: 107 DWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 177 RRTKTVAAVCLYIACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMN 236
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 237 PIDPESLIYRFAKQLEFGSATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGAA 289
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 290 LILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 324
>gi|18312777|ref|NP_559444.1| transcription initiation factor IIB [Pyrobaculum aerophilum str.
IM2]
gi|21363011|sp|Q8ZWS3.1|TF2B_PYRAE RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|18160260|gb|AAL63626.1| transcription initiation factor IIB (TFIIB) [Pyrobaculum aerophilum
str. IM2]
Length = 333
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D + R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPILYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>gi|340344692|ref|ZP_08667824.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519833|gb|EGP93556.1| Transcription factor TFIIB cyclin-related protein [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 305
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 110/301 (36%), Gaps = 62/301 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C L +D++G C CG V ++F + R G PT + +
Sbjct: 11 CPRCAKNALLTDDVTGERFCGKCGYVISEKSQESGPEWRSFTQDEHGNKARAGAPTSLTM 70
Query: 50 H----------VGTAGTGSALNYKEK-------------KIYES------------NKLI 74
H + +G L K +++ES N+L
Sbjct: 71 HDMGLSTIINPMNKDASGKPLTASMKSTIERLRTWDSRSQVHESVDRNLRQALSELNRLK 130
Query: 75 DELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVA 134
D+L + + + + I+K + G +I + Y R + +++V
Sbjct: 131 DKLALSDAVIEKAAYIYRKAIEK----KLVRGRSISAMIASALYAACRDTETPRTLNDVG 186
Query: 135 SVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
N ++ R + L+LK+P VD + R+ SR+ G T ++ ++
Sbjct: 187 EAANLKKKDIARCYRLLHRELDLKMPVVDPIQCVARIA--SRI-GIT-------EKTKRY 236
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+L + + + G+ PM + A L NG + ++A+ T VT R RYK
Sbjct: 237 AAKVLKISQEHEESAGKDPMGLAAAALYLACVKNGEDITQRDIAEAASVTEVTIRNRYKG 296
Query: 255 L 255
L
Sbjct: 297 L 297
>gi|448411716|ref|ZP_21576072.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
gi|445669650|gb|ELZ22258.1| transcription factor TFIIB cyclin-related protein [Halosimplex
carlsbadense 2-9-1]
Length = 324
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 123/306 (40%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG L + G +C CG+V +AFD + R G PT
Sbjct: 29 CPECGG-NLASDAEHGETVCEECGLVVEEDEIDPGPEWRAFDASEKDEKSRVGAPTTNMM 87
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 88 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 146
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R LD+ LP + E
Sbjct: 147 ASA---LG--LPESVRETASVIYRRALDEDLLPGRSIEGVATSALYAAARQAGTPRSLDE 201
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A+V E+ R VV L+L++ D S R + ++LD + D +
Sbjct: 202 IAAVSRVGKDEIARTYRYVVRELSLEIQPADPESYVPRFV--------SDLD--LPDEVE 251
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
++ LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 252 RRARQLLGTAKEQGVHSGKSPVGLAAAAVYAASLLANEKVTQSEVSEVANISEVTIRNRY 311
Query: 253 KELLEA 258
ELLEA
Sbjct: 312 HELLEA 317
>gi|1841399|emb|CAA84309.1| AtTFIIB2 [Arabidopsis thaliana]
Length = 301
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 72 KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPIS 131
K I + +L L + + ++ D + G L+ AC Y+ R +DK +
Sbjct: 99 KTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 158
Query: 132 EVASVLN-CDVYELGRMITRVVEFLNL---KLPEVDIVSMFERVIRNSRLQGFTNLD-ES 186
E+ SV N E+GR +V+ L L +L E+ + + + R G TN ++
Sbjct: 159 EICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKA 218
Query: 187 MLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVV 246
+ ++K + R P+ + AV+ + +L+ + +++
Sbjct: 219 AQESVQKSEEFDIR----------RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEG 268
Query: 247 TCRKRYKELLEALVKVAQALPWGKDVTVKNV 277
T R YK+L L K+ A + K+ +KN+
Sbjct: 269 TIRNSYKDLYPHLSKIIPAW-YAKEEDLKNL 298
>gi|145592173|ref|YP_001154175.1| transcription initiation factor IIB [Pyrobaculum arsenaticum DSM
13514]
gi|189029859|sp|A4WMA6.1|TF2B_PYRAR RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|145283941|gb|ABP51523.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
arsenaticum DSM 13514]
Length = 333
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>gi|291409108|ref|XP_002720832.1| PREDICTED: RNA polymerase III transcription initiation factor BRF2
isoform 1 [Oryctolagus cuniculus]
Length = 423
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDVFSSTYLQMVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASASVPAKYVEDKEKMLARTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPW 268
S ++ ++A+ V R +ELL L+++A L W
Sbjct: 236 SLRPSGRLTCSLARFCKLASVDLPYPASSRLQELLAVLLRMAGQLAW 282
>gi|350593420|ref|XP_003133415.3| PREDICTED: transcription factor IIIB 50 kDa subunit [Sus scrofa]
Length = 417
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + +++ D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQRNWPLTMGTICTLIYADLDVFSGTYMQMVKLLGLDVPSLCLADLVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PVV A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELADETWLVTGRHPLPVVTAATFLAWQ 235
Query: 227 LNGVSVKIE-NVAKEVHCTVV----TCRKRYKELLEALVKVAQALPWGKDVTV--KNVLK 279
S ++ ++A+ V R +ELL L+++A L W + + + ++V+K
Sbjct: 236 SLQPSDRLTCSLARFCKLANVDLPYPAASRLQELLAVLLRMAGQLAWLQVLKLDKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDGLN 304
+ + + ++ + RK RDG +
Sbjct: 296 H---IGDLLQHRHTLVRKAFRDGTS 317
>gi|83770830|dbj|BAE60963.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870227|gb|EIT79413.1| transcription initiation factor TFIIIB, Brf1 subunit [Aspergillus
oryzae 3.042]
Length = 734
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G + H
Sbjct: 39 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTH 96
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G +E N+ I++L L++ + + + + K+ G F
Sbjct: 97 VRSYGPGFQRGGGAESREITEQNGNRYINQLARALNIP-ESASKAAGQVFKLAVGLNFIQ 155
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR ++E L L +
Sbjct: 156 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLM 215
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 216 NPIDPESLIYRFAKQLEFGAATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 268
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 269 ALILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 304
>gi|356504767|ref|XP_003521166.1| PREDICTED: transcription initiation factor IIB-2-like [Glycine max]
Length = 306
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 64/310 (20%), Positives = 120/310 (38%), Gaps = 47/310 (15%)
Query: 3 CTSCGSKTLTREDIS-GSLICVSCGVV-----------------QAFDNYDAQLYG---- 40
C+ C +T D S G +C CG+V ++ DN ++ G
Sbjct: 6 CSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNP 65
Query: 41 --RDGPTGIYVHVGTAGTGSALN-----YKEKKIYESNKLIDELTFKLDLTGQRSIQIKN 93
DG + G+G L+ ++ + + + K I ++ +L L +
Sbjct: 66 LLTDGGLSTVIAKPNGGSGEFLSSSVGRWQNRGLIVAFKTIATMSDRLGLVATIKDRANE 125
Query: 94 MIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN-CDVYELGRMITRVV 152
+ ++ D + G L+ AC Y+ R +DK + E+ SV N E+GR +V
Sbjct: 126 IYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIV 185
Query: 153 EFLNLKLP---EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWF--L 207
+ L L+ E+ + + + R G TN Q V AV+
Sbjct: 186 KQLGLEQGQSVEIGTIHAGDFMRRFCSNLGMTN-----------QAVKAAQEAVQKSEEF 234
Query: 208 TTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP 267
R P+ + AV+ + +L+ ++++ T R YK+L + K+ +
Sbjct: 235 DIRRSPISIAAAVIYIITQLSDDKKPPKDISVATGVAEGTIRNSYKDLYPHVSKIIPSW- 293
Query: 268 WGKDVTVKNV 277
+ K+ +KN+
Sbjct: 294 YAKEEDLKNL 303
>gi|289580210|ref|YP_003478676.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448281448|ref|ZP_21472754.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289529763|gb|ADD04114.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445578870|gb|ELY33270.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 329
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 65/312 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + ++ +D +C CG+V +AFD + R G PT
Sbjct: 34 CPECGGRLIS-DDEHAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDQKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 93 HDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 149
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L++ LP + E+
Sbjct: 150 RMASALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEI 207
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V D EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SAVSRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETER 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + VT R RYK
Sbjct: 258 MARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYK 317
Query: 254 ELLEALVKVAQA 265
ELLEA A A
Sbjct: 318 ELLEASDTAAPA 329
>gi|448323476|ref|ZP_21512935.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
gi|445599623|gb|ELY53653.1| transcription initiation factor TFB [Natronococcus amylolyticus DSM
10524]
Length = 376
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + +SEV V + E+ R V + L L++ VD R
Sbjct: 227 AVLYAACRQEGIPRSLSEVTEVSRVENKEIARTYRYVSQELELEMRPVDPKKYLPRFC-- 284
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
+ LD S +R++ + +++ + + + +G+ P A + L G
Sbjct: 285 ------SQLDVS--ERIQSKAEEIIDTSAEQGILSGKSPTGFAAAAIYSSSLLYGEKKTQ 336
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALV 260
+ VA+ T VT R RY+E LEA+
Sbjct: 337 KQVAEVAQVTEVTIRNRYQEQLEAMT 362
>gi|302798535|ref|XP_002981027.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
gi|300151081|gb|EFJ17728.1| hypothetical protein SELMODRAFT_444750 [Selaginella moellendorffii]
Length = 636
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 43/287 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV---QAFDNY---------DAQLYG---RDGPTGI 47
C+ CG + E G + C CG V F + +Q G + G
Sbjct: 4 CSYCGKDQIA-EHNDGFICCTGCGRVLDDNVFSSEPTFAKSASGQSQFVGNIVKQSQYGT 62
Query: 48 YVHVGTAGTGSALNYK----EKKIYESNKLIDELTFKLDLTGQRSI--QIKNMIDKITDG 101
Y + GTG+ Y+ ++ + + + I + L + G I + +
Sbjct: 63 YARIVDDGTGTVSGYQSNSHQRTLDKGRQEIRNIASSLSVGGGDDIVGSAHRIYVLAVEK 122
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
F G + AC Y+V R +K + + + L VY LG + ++ L L
Sbjct: 123 NFTKGRRTSQVAAACLYIVCRQGNKPYLLIDFSDCLQTSVYLLGAVFLQLCTLLRL---- 178
Query: 162 VDIVSMFERVIRNSR-LQGFTNLDESMLDRM-----RKQGVLLLNCAVKW-------FLT 208
D M ++ + S + FT+ +L R+ K + N A++ ++
Sbjct: 179 -DQHPMVQKPVDPSLFIHRFTD---RLLHRIAPGTSSKNQFAIANTALRIVASMKQDWIQ 234
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
TGRRP + A L+ ++G+ +V V+ T KR E
Sbjct: 235 TGRRPSGICGAALLLSTRIHGLECSTADVESVVYVCKATITKRLVEF 281
>gi|386874734|ref|ZP_10116960.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
gi|386807357|gb|EIJ66750.1| putative transcription initiation factor IIB [Candidatus
Nitrosopumilus salaria BD31]
Length = 306
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 12/156 (7%)
Query: 97 KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN 156
K+ + G LI A Y R ++ + ++A+ N + L R + +++ L
Sbjct: 150 KVVSAKLTRGRTMTSLISASLYAACRENNIPRTLDDIANAGNVERRILSRDLRTIIKKLG 209
Query: 157 LKLPEVDIVSMFERVIRNSRLQGFTNLDE-SMLDRMRKQGVLLLNCAVKWFLTTGRRPMP 215
L L + D S ++ N L+ T D +L R K+ + T G+ P+
Sbjct: 210 LNLNQYDTSSFISKISNNMDLKEKTKRDAFEILKRCEKEQI-----------TAGKHPVA 258
Query: 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
A L +NG + + + E + VT R R
Sbjct: 259 QAAASLYISCIMNGEKISQKKFSAESGVSDVTIRNR 294
>gi|257389069|ref|YP_003178842.1| transcription factor TFIIB cyclin-related protein [Halomicrobium
mukohataei DSM 12286]
gi|257171376|gb|ACV49135.1| Transcription factor TFIIB cyclin-related [Halomicrobium mukohataei
DSM 12286]
Length = 327
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 45/302 (14%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S TL +D G +C CG+V +AFD+ + R G PT +
Sbjct: 32 CPEC-SGTLVVDDEHGETVCEDCGLVVETDEIDRGPEWRAFDSSEKDEKSRVGAPTTNMM 90
Query: 50 HVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD-- 107
H G + +++++K Y N L + K+ + + + + K + + LG+
Sbjct: 91 H--DKGLSTNIDWRDKDAY-GNSLSGKQRQKMQRLRKWNERFRTRDSKERNLKQALGEID 147
Query: 108 ------WFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFLN- 156
P + + V+ R LD+ LP + V VY R + R ++ ++
Sbjct: 148 RMASAVGLPENVRETASVIYRRALDENLLPGRSIEGVSTASVYAAARQAGVPRSLDEIDE 207
Query: 157 -LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAVKW 205
++ + +I + V+R L+ ES + D + LL A +
Sbjct: 208 VSRVEKSEIARTYRYVVRELGLEVAPADPESYVPRFASSLELSDEAEHRARQLLQNAKEQ 267
Query: 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265
+ +G+ P+ + A + L V++ + VT R RY ELLEA Q
Sbjct: 268 GVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYHELLEA----EQG 323
Query: 266 LP 267
LP
Sbjct: 324 LP 325
>gi|429190252|ref|YP_007175930.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134470|gb|AFZ71481.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 325
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 121/306 (39%), Gaps = 67/306 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C + L +D G +C CG+V +AFD+ + R G PT
Sbjct: 31 CPECSGR-LVSDDERGETVCEDCGLVVDEGEIDRGPEWRAFDSAEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISE 132
LG P + + V+ R L++ LP + E
Sbjct: 149 A---SALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDE 203
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+++V + E+ R VV L L++ D S R ++LD + D
Sbjct: 204 ISAVSRVEKDEIARTYRYVVRELGLEIQPADPESYVPRFA--------SDLD--LPDETE 253
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
++ LL A + +G+ P+ + A + L V +V++ + VT R RY
Sbjct: 254 RRARQLLKTAKDAEIHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRY 313
Query: 253 KELLEA 258
ELLEA
Sbjct: 314 HELLEA 319
>gi|424811965|ref|ZP_18237205.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756187|gb|EGQ39770.1| transcription initiation factor IIB, TFIIB [Candidatus
Nanosalinarum sp. J07AB56]
Length = 358
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 102/296 (34%), Gaps = 56/296 (18%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIY 48
+ C C S+ + G L+CV CG + +AF+ + + R G Y
Sbjct: 59 LTCPECESQRFEEDSAQGELVCVECGTIIDEDRIDDSAEYRAFNEAEREKKARAGQPLTY 118
Query: 49 VH----VGTA-GTGSALNYK---------------EKKIYESNKL--------IDELTFK 80
V T G GS YK K++ +S ++ +
Sbjct: 119 TKHDMGVSTEIGKGSGELYKVSGEKRAQYYRLRKWHKRLTKSKDRNLGFALSELNSMISN 178
Query: 81 LDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140
L+L ++ + +K D G +I A Y+V R + E++ +
Sbjct: 179 LNLPESVHEEVARLYEKAVDQGLVRGRSMESIISALLYIVARKQGTPRTLDEISDASGIE 238
Query: 141 VYELGRMITRVVEFLNLK-LP--EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR V L L+ LP D V F G L + R R
Sbjct: 239 KREIGRAYRYVARELGLRILPAKPQDYVPRF---------AGKLQLSGEVQARARN---- 285
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+L A + L +G+ P + A L L G VA V T VT R RYK
Sbjct: 286 ILEEAREKDLLSGKGPTGLAAAALYIAAVLEGEKRTQREVADVVGVTEVTIRNRYK 341
>gi|448503020|ref|ZP_21612884.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
gi|445693422|gb|ELZ45574.1| transcription factor TFIIB cyclin-related protein [Halorubrum
coriense DSM 10284]
Length = 335
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 10/149 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E +V + EL R V+ L L++ D S R
Sbjct: 196 ASLYAAARQVGNPRSLDEFTAVSRVEKMELTRTYRYVIRELGLRVQPADPTSYVPRFA-- 253
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
SRL +L E R R+ LL+ A +T+G+ P+ + A + L+ V
Sbjct: 254 SRL----DLSEETERRARE----LLDDAASEGITSGKSPVGLAAAAVYAAALLSNEKVTQ 305
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVA 263
V+ + VT R RYKELL+A V+
Sbjct: 306 SQVSGVADVSEVTIRNRYKELLDASASVS 334
>gi|448348503|ref|ZP_21537352.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
gi|445642870|gb|ELY95932.1| transcription factor TFIIB cyclin-like protein [Natrialba
taiwanensis DSM 12281]
Length = 360
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 65/312 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + +T +D +C CG+V +AFD + R G PT
Sbjct: 65 CPECGGRLIT-DDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 123
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 124 HDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 180
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L++ LP + E+
Sbjct: 181 RMASALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYASARQAGTPRSLDEI 238
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V D EL R ++ L L++ D R + ++LD + D +
Sbjct: 239 SAVSRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETER 288
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + VT R RYK
Sbjct: 289 MARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYK 348
Query: 254 ELLEALVKVAQA 265
ELLEA A A
Sbjct: 349 ELLEASDTAAPA 360
>gi|448562505|ref|ZP_21635463.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
gi|445718823|gb|ELZ70507.1| transcription initiation factor TFB [Haloferax prahovense DSM
18310]
Length = 332
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C +T E+ G IC CG+V +AFD+ + R G PT
Sbjct: 37 CPECSGHLVTDEE-HGETICEECGLVVEETVVDRGPEWRAFDSAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R L+D LP + V +Y RM R ++ L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 156 N--LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + V+R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEAERQARQLLRDAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLE 324
>gi|449278527|gb|EMC86349.1| Transcription factor IIIB 90 kDa subunit, partial [Columba livia]
Length = 536
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 72 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 131
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 132 AHMLEF-GDKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 184
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V + V T RKR E
Sbjct: 185 RTVKEVIRVVKVCESTLRKRLTEF 208
>gi|332028617|gb|EGI68652.1| Transcription factor IIIB 90 kDa subunit [Acromyrmex echinatior]
Length = 182
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 21/178 (11%)
Query: 3 CTSCGSKTLTREDISGSLICVSCG------VVQAFDNYDAQLYGRDGPTGIYVHVGTAGT 56
C +CGS + + G IC+ CG V+ + ++ G+ G +V T
Sbjct: 6 CRNCGSTNIETDPGRGDAICIECGFVLEDSVIISQTTFEESSSGKVRVPGHFV--ANDST 63
Query: 57 GSALNY--------KEKK---IYESNKLIDELTFKLDLTGQRSIQIK-NMIDKITDGEFG 104
GSA N+ KE + + + K I L +L L Q I+ N
Sbjct: 64 GSATNFGASYYVNGKESRRITLQNARKGITHLCLQLGLN-QNCIETSVNFYKMALCYHLT 122
Query: 105 LGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEV 162
G AC Y+ R++ + +++ VL+ V+ELGR R L + +P +
Sbjct: 123 RGRKQAHNQAACVYITCRIEKTEHMLIDISDVLHICVHELGRTYLRFTTALRIHIPTM 180
>gi|448352869|ref|ZP_21541649.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
gi|445641511|gb|ELY94588.1| transcription factor TFIIB cyclin-like protein [Natrialba
hulunbeirensis JCM 10989]
Length = 329
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 34 CPECGGR-LISDDEHAETVCQECGLVVEEDEIDRGPEWRAFDAAEKDQKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 93 HDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 151
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 152 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R ++ L L++ D R + ++LD + D +
Sbjct: 211 SRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 260
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 261 ELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 320
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 321 EASDTAAPA 329
>gi|429966286|gb|ELA48283.1| hypothetical protein VCUG_00324, partial [Vavraia culicis
'floridensis']
Length = 165
Score = 40.0 bits (92), Expect = 3.1, Method: Composition-based stats.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 37/176 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQ-----------AFDNYDAQLYGR-DGPTGIYVH 50
C +CGS + + S+ C CG + +N +QL G+ T Y
Sbjct: 6 CKACGSTDIDNGYSTSSICCRKCGTLNEELFITSSLNFTENNGASQLNGQFVRMTDTYAK 65
Query: 51 VG---TAGTGSALNYKEKKIYESNKLIDELT------FKLDLTGQRSIQIKNMIDKITDG 101
VG T + + K I S L DE+ +KL L G + + +N++ ++
Sbjct: 66 VGGNIIRTTNQQIQNQIKNICASLGLSDEVAQSAHRWYKLSLQGNLT-RGRNILYTLS-- 122
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL 157
AC Y+V R + + + A +L+ DV+++G + R+V FLN+
Sbjct: 123 -------------ACIYIVCRQEKTPHLLIDFAHLLDLDVFKIGNIFVRIVVFLNV 165
>gi|119873155|ref|YP_931162.1| transcription initiation factor IIB [Pyrobaculum islandicum DSM
4184]
gi|189029860|sp|A1RV37.1|TF2B_PYRIL RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|119674563|gb|ABL88819.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum islandicum
DSM 4184]
Length = 333
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + L+G + ++ A T VT
Sbjct: 257 -EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL + L
Sbjct: 316 RNRYKELAKTL 326
>gi|330834358|ref|YP_004409086.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
gi|329566497|gb|AEB94602.1| transcription initiation factor IIB [Metallosphaera cuprina Ar-4]
Length = 304
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN----LKLPEVDIVS 166
+L+G + V R++ + ++E+ + N + + RV L L PE I++
Sbjct: 145 VLVGITLFYVARMNRIPVQLNEIKEMYNASSKTIWDCLERVQLVLKSDIGLTRPEKQIIN 204
Query: 167 MFERVIRNS-----RLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ ++ G TNL + + + + LL LT+G+ +P A++
Sbjct: 205 SYPNRAPTPLEYIPKIVGKTNLPQPVETKAAEIAELLYRSG----LTSGKGYLPTAAAIV 260
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
V L + +A+ + T VT R RYKE++++L
Sbjct: 261 YLVSALLDTKKTQKEMAESLKVTEVTIRNRYKEIIDSL 298
>gi|70999253|ref|XP_754348.1| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
fumigatus Af293]
gi|66851985|gb|EAL92310.1| transcription factor TFIIIB complex subunit Brf1, putative
[Aspergillus fumigatus Af293]
Length = 748
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G V H
Sbjct: 54 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAVVQGTFVGEDQTH 111
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G A+ +E + I++L+ L++ + +++ + K+ G F
Sbjct: 112 VRSYGPGFQRGGAMESREITEQNGTRYINQLSRALNIP-ESAMKAAGQVFKLAVGLNFIQ 170
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A L +V++LGR +++ L L +
Sbjct: 171 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADALMVNVFKLGRTYKALLDELRLGGNVFLM 230
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 231 NPIDPESLIYRFAKQLEFGTATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 283
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 284 ALILAARMNNFRRTVREVVYVVKVTEITINQRLNEF 319
>gi|315425159|dbj|BAJ46829.1| transcription initiation factor TFIIB, partial [Candidatus
Caldiarchaeum subterraneum]
Length = 160
Score = 40.0 bits (92), Expect = 3.3, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 151 VVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTG 210
+++ L LK+P D I +++ LD+ R ++ + LLN AVK T G
Sbjct: 57 LLKHLGLKVPVAD------PSIYVNKIAAKVGLDQ----RTVQEAIRLLNEAVKRKATVG 106
Query: 211 RRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263
+ P+ + A L + ++ +++AK T VT R R+K L + L VA
Sbjct: 107 KDPVGIAAAALYMACQETTQNLTQKDIAKAAGVTEVTVRNRFKGLKDVLETVA 159
>gi|448329711|ref|ZP_21519008.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
gi|445613635|gb|ELY67331.1| Transcription factor TFIIB cyclin-related protein [Natrinema
versiforme JCM 10478]
Length = 326
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + ++ +D +C CG+V +AFD+ + R G PT
Sbjct: 31 CPECGGRLIS-DDEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 149 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 207
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 257
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 258 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 317
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 318 EASDTAAPA 326
>gi|448414464|ref|ZP_21577533.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
gi|445682030|gb|ELZ34454.1| transcription initiation factor iib (tfiib) [Halosarcina pallida
JCM 14848]
Length = 340
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 122/295 (41%), Gaps = 47/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG +L ++ G +C CG+V +AFD+ + R G PT
Sbjct: 45 CPECGG-SLVSDEARGETVCGDCGLVVEEDAVDHGPEWRAFDSSERDSKSRVGAPTTRMM 103
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 104 HDKGLSTNIGWQNKDAYGNSLSARQREQMQRLRTWNE-RFRTRNSKERNLKQALGEIDRM 162
Query: 99 TDGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEF 154
LG P + + V+ R L D LP + V +Y R R ++
Sbjct: 163 ASA---LG--LPENVRETASVIYRRALGDDLLPGRSIEGVATASLYAAARQAGTPRSLDE 217
Query: 155 LNL--KLPEVDIVSMFERVIRNSRLQGFTNLDESML----------DRMRKQGVLLLNCA 202
L ++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 218 LETVSRVDKMELTRTYRYIVRELKLEIEPADPEQYVPRFASELGISDEAERQAHTLLRGA 277
Query: 203 VKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V++ + VT R RYKELLE
Sbjct: 278 KEVGIHSGKSPVGLAAAAVYAAALLTNEKVTQSQVSEVASISEVTIRNRYKELLE 332
>gi|448591526|ref|ZP_21651014.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
gi|445733500|gb|ELZ85069.1| transcription initiation factor TFB [Haloferax elongans ATCC
BAA-1513]
Length = 331
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 121/294 (41%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG L +++ G +C CG+V +AFD + R G PT
Sbjct: 36 CPECGG-NLVQDNEHGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKSRVGAPTTKMM 94
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 95 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNL--KQALGEID 151
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R L+D LP + V +Y RM R ++ L
Sbjct: 152 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 209
Query: 156 N--LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 210 EKVSRVEKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARELLRGAK 269
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V++ + VT R RYKELLE
Sbjct: 270 ETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSEVADISEVTIRNRYKELLE 323
>gi|395861899|ref|XP_003803211.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Otolemur garnettii]
Length = 678
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 91/276 (32%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G + AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRRMAHVTAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>gi|167045037|gb|ABZ09701.1| putative transcription factor TFIIB repeat [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 300
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 106/297 (35%), Gaps = 52/297 (17%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGP------------TGIYVH 50
C CG K L + +G + C +CG V R P T + +H
Sbjct: 12 CLRCGEKALITDAETGEVFCGACGFVSPERIESPGPERRSFPDDRGNKERTGVGTSLTIH 71
Query: 51 ----------VGTAGTGSALNYKEKK------IYES---NKLIDE-----------LTFK 80
TG L+ KK +++S NK ID L K
Sbjct: 72 DQGLSTVINPTNRDATGKPLSSSMKKTLKRLRVWDSRSHNKPIDRNFKQAFNELYRLKDK 131
Query: 81 LDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140
L L+ + + K + + G L+ + Y R + +++ N
Sbjct: 132 LTLSDSVVEKAAYIYRKAINKKLVKGRTISALMASALYAACREVGTPRTLKDISDTTNIK 191
Query: 141 VYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLN 200
+L +V L+LK+P V+ V R+ S++ + ++ ++ +L
Sbjct: 192 KRDLAANYRLLVNELDLKIPVVNSVHNVARIA--SKI--------GISEKTKRIATEILR 241
Query: 201 CAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
A + ++ G+ PM + L G + ++A+ T VT R RYK LLE
Sbjct: 242 KAEESEISAGKNPMSLAATALYISCRKTGENYSQRDLAEAASVTEVTIRNRYKGLLE 298
>gi|325969119|ref|YP_004245311.1| zinc finger TFIIB-type domain protein [Vulcanisaeta moutnovskia
768-28]
gi|323708322|gb|ADY01809.1| Zinc finger TFIIB-type domain protein [Vulcanisaeta moutnovskia
768-28]
Length = 311
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 120/303 (39%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C +CGS + + L+C CG+V +AF+ + ++ R P I
Sbjct: 15 CPNCGSTDIVFDPERAELVCRHCGLVLEEHVMDLGPEWRAFNGEETLVHERAKP--ISPA 72
Query: 51 VGTAGTGSAL-------------------------NYKEKKIYESNKLIDELTFKLDLTG 85
+ G G+++ Y E++I E +I + ++L+L
Sbjct: 73 LPGQGLGNSVISIKHNILLHNKLRALIRLNRFNQYQYTERRIAELLDVIKPVKYELNLPD 132
Query: 86 QRSIQIKNMIDKITDGEFGL-GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+I+ ++ + + L G L YV + P+ E+ S LN E
Sbjct: 133 S-AIEEALVLFRQLASRYDLRGVRTKDLALVLLYVACKRSRIVCPLRELRSTLNI---ER 188
Query: 145 GRMITRVVEFLNLKLPEVDIV--------SMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ I+R++ + + D++ +RVI +L +E + + K +
Sbjct: 189 SKRISRLLGLVRQVVGNNDVIMKSQEELGRFLQRVINTLKL------NEDVRYHVTKLAM 242
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
++N + LT GR +V + + V L G+ + +VA+ T VT R RYKE++
Sbjct: 243 EIINEGQRKRLTNGRTFYALVASAVYIAVTLMGIRKRQRDVAEASGVTDVTIRNRYKEVI 302
Query: 257 EAL 259
+
Sbjct: 303 SKI 305
>gi|307192899|gb|EFN75927.1| Transcription factor IIIB 90 kDa subunit [Harpegnathos saltator]
Length = 190
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 31/183 (16%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG---------- 52
C +CGS ++ + G +C +CG V ++ + P+G + +G
Sbjct: 6 CRNCGSTSIDTDPARGDAVCTNCGFVLEDQLIVSETTFEESPSGHMMVLGQFVASDSTGG 65
Query: 53 TAGTGSA--LNYKEKK---IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
G G+A +N KE + + + K I L +L L N + G + +
Sbjct: 66 ATGFGAAYHVNGKESRGITLQNARKGITHLCAQLRL--------NNHCVETAMGFYKMAL 117
Query: 108 WFPILIG--------ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
+ + G AC Y+ R + S + +++ VL V+ELGR + + L++ +
Sbjct: 118 SYRLTRGRKQAHNQAACVYITCRTERTSHMLIDISDVLQICVHELGRTYVKFAKALHINI 177
Query: 160 PEV 162
P +
Sbjct: 178 PSI 180
>gi|449296571|gb|EMC92590.1| hypothetical protein BAUCODRAFT_77565 [Baudoinia compniacensis UAMH
10762]
Length = 809
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 107/268 (39%), Gaps = 34/268 (12%)
Query: 15 DISGSLICVSCGVVQAFDN------YDAQLYGRDGPTGIYV-----HVGT---------A 54
D G IC+SCG A N ++ G G ++ H T
Sbjct: 44 DEDGMKICLSCGTQLADVNIVADVTFEEDARGAATVQGGFIGENARHARTFGPKAFRRIG 103
Query: 55 GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIG 114
G G N ++ ++ + + + +L++T SIQ + + F G ++G
Sbjct: 104 GVGGERNSTQEAENKARRTLASICPRLNITDDYSIQAQRLFGLAARLNFTSGRSTDEVVG 163
Query: 115 ACSYVVMRLDDK-SLPISEVASVLNCDVYELGRMITRVVEFL-----NLKLPE-VDIVSM 167
AC + R + + S+ + ++A + + +V+ LG + + + L NL + + VD+ +
Sbjct: 164 ACLFAACRKNPQNSVLLMDIADIFHINVFRLGEVYKNLCKDLCYHKENLPIQQLVDVEPL 223
Query: 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVEL 227
++ R +L+ T + D V +L + ++ TGR P + A ++ +
Sbjct: 224 IQKYCR--KLEFGTRTRDVAED-----AVKILKRMNRDWMVTGRHPAGICGACIILAARM 276
Query: 228 NGVSVKIENVAKEVHCTVVTCRKRYKEL 255
N + V +T KR +E
Sbjct: 277 NNFRRSVREVVYVAKVADMTIAKRIEEF 304
>gi|354611426|ref|ZP_09029382.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
gi|353196246|gb|EHB61748.1| Transcription initiation factor IIB [Halobacterium sp. DL1]
Length = 330
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R + + EVA+V + E+ R VV L L++ D S R
Sbjct: 192 YAAARQANTPRSLDEVANVSRVERDEIARTYRYVVRELGLEVAPTDPASYVPRFC----- 246
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
+ LD + D + ++ LL A +T+G+ P+ + A + L + V
Sbjct: 247 ---SELD--LPDEVERRARELLTAAEDAGITSGKSPVGLAAAAVYAASLLTNERITQSEV 301
Query: 238 AKEVHCTVVTCRKRYKELLEA 258
+ + + VT R RY E+LEA
Sbjct: 302 SDVANISEVTIRNRYHEILEA 322
>gi|330792241|ref|XP_003284198.1| hypothetical protein DICPUDRAFT_27213 [Dictyostelium purpureum]
gi|325085895|gb|EGC39294.1| hypothetical protein DICPUDRAFT_27213 [Dictyostelium purpureum]
Length = 627
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 91/240 (37%), Gaps = 32/240 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGTAGTGSALNY 62
C+SC + DI L+C CG +Q+ Q P G+ V +G N
Sbjct: 4 CSSCNGDVV---DIDEKLVCQECGNIQSELGRFTQQLDFSAP-GVNVSLGGHS-----NT 54
Query: 63 KEKKIYES---------NKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPI-- 111
KK+Y S NK D L + + + S+ KN + T W PI
Sbjct: 55 TTKKVYFSNTGCKGPYHNKFEDALEYICNQL-KTSVSFKNTMR--THYYLAFSKWRPIRR 111
Query: 112 -------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDI 164
+ A +++V R ++K ++++ LN Y +G++ ++ + + E+
Sbjct: 112 IDPTYSYVCAALAHIVYRSENKGTTLADIGIKLNLKYYTIGKISMKIQSVAGILVDELSE 171
Query: 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
S +R N + ++ E R L+ C L+ GR P + A L
Sbjct: 172 FSYLDRGC-NILKKSYSYSHEDCESTKRLASELIKFCKT-ISLSDGRNPSSIYCACLYLA 229
>gi|317137549|ref|XP_001727802.2| transcription factor TFIIIB complex subunit Brf1 [Aspergillus
oryzae RIB40]
Length = 745
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------H 50
P C + + +D G +C CG V + N +++ + +G + H
Sbjct: 61 PNPGCPAPHIVEDD--GQKVCSGCGTVISEANIVSEVTFGETSSGAAIVQGTFVGEDQTH 118
Query: 51 VGTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
V + G G +E N+ I++L L++ + + + + K+ G F
Sbjct: 119 VRSYGPGFQRGGGAESREITEQNGNRYINQLARALNIP-ESASKAAGQVFKLAVGLNFIQ 177
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR ++E L L +
Sbjct: 178 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRTYKALLEELRLGGNVFLM 237
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + T ++ + V ++ + ++TTGRRP + A
Sbjct: 238 NPIDPESLIYRFAKQLEFGAATM-------QVASEAVRIVQRMNRDWMTTGRRPAGICGA 290
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 291 ALILAARMNNFRRTVREVVYVVKVTEITISQRLNEF 326
>gi|315425611|dbj|BAJ47270.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315427578|dbj|BAJ49177.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343484494|dbj|BAJ50148.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 235
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
I E+AS + + +L R I+++V LNL+L ++ ++ +++ R L T
Sbjct: 113 IEEIASAADVPLNQLNREISKLVFGLNLRLKPFNVAALIDKLTRTLELPPTTA------- 165
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ A +GR+P + A + GV + V++ +V+T R
Sbjct: 166 ---NTACRIYQSAASLGKISGRKPAAISAAAVYLACRREGVKKPLSTVSEAAGISVLTLR 222
Query: 250 K 250
K
Sbjct: 223 K 223
>gi|397773185|ref|YP_006540731.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340837|ref|ZP_21529806.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682278|gb|AFO56655.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629443|gb|ELY82726.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 319
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R +D + EV SV + E+GR + + L++ L + R S L
Sbjct: 182 YTACRKEDIPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQFVPRFC--SEL 239
Query: 178 QGFTNLDE---SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
T+++ ++DR +QG L +G+ P A + L ++
Sbjct: 240 DVGTDVETKAIEIIDRTTEQG-----------LHSGKSPTGFAAAAIYAAGLLCDETIPQ 288
Query: 235 ENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ TVVT R RY+E LEA+
Sbjct: 289 RAVAETAQTTVVTVRNRYREQLEAI 313
>gi|429190412|ref|YP_007176090.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
gi|429134630|gb|AFZ71641.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronobacterium gregoryi SP2]
Length = 324
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 121/305 (39%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L + +C CG+V +AFD+ + R G PT
Sbjct: 29 CPECGGR-LVSDAEHAETVCSDCGLVVEEDEIDRGPEWRAFDSAEKDEKSRVGAPTTNMM 87
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G AL+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 88 HDQGLSTNIGWQDKDAYGKALSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 144
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L++ LP + E+
Sbjct: 145 RMASALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEI 202
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V + EL R V+ L L++ D S R + ++LD + D +
Sbjct: 203 SAVSRVEKMELTRTYRYVIRELGLEVQPADPESYVPRFV--------SDLD--LPDETER 252
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RYK
Sbjct: 253 MARELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVANISEVTIRNRYK 312
Query: 254 ELLEA 258
ELLEA
Sbjct: 313 ELLEA 317
>gi|448576224|ref|ZP_21642267.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
gi|445729904|gb|ELZ81498.1| transcription initiation factor TFB [Haloferax larsenii JCM 13917]
Length = 332
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG L +++ G +C CG+V +AFD + R G PT
Sbjct: 37 CPECGG-NLVQDNERGETVCGECGLVVEDTVVDRGPEWRAFDAAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R L+D LP + V +Y RM R ++ L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATASLYAAARMADTPRSLDEL 210
Query: 156 N--LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVEKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARELLRGAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSAVADISEVTIRNRYKELLE 324
>gi|433591588|ref|YP_007281084.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433306368|gb|AGB32180.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 341
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 117/302 (38%), Gaps = 59/302 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C C +V +AFD + R G PT
Sbjct: 47 CPECGGR-LVSDDGRAETVCTDCSLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 105
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 106 HDQGLSTNIGWQDKDAYGRSLSSRQREKMQRLRTWNER-FRTRNSKERNLKQALGEIDRM 164
Query: 99 TDGEFGLGDWF--------------PILIG--------ACSYVVMRLDDKSLPISEVASV 136
GL D +L G A Y R + E+++V
Sbjct: 165 ASA-LGLPDTVRETSSVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 223
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ E+ R VV L L++ D S R ++LD + D ++
Sbjct: 224 SRVEKAEIARTYRYVVRELGLEVQPADPESYVPRFA--------SDLD--LADETERRAH 273
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL+ A + + +G+ P+ + A + L V +V+ + VT R RYKELL
Sbjct: 274 DLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSDVASISEVTIRNRYKELL 333
Query: 257 EA 258
EA
Sbjct: 334 EA 335
>gi|448346035|ref|ZP_21534924.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633968|gb|ELY87155.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 319
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R +D + EV SV + E+GR + + L++ L + R S L
Sbjct: 182 YTACRKEDIPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQFVPRFC--SEL 239
Query: 178 QGFTNLDE---SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
T+++ ++DR +QG L +G+ P A + L ++
Sbjct: 240 DVDTDVETKAIEIIDRTTEQG-----------LHSGKSPTGFAAAAIYAAGLLCDETIPQ 288
Query: 235 ENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ TVVT R RY+E LEA+
Sbjct: 289 RAVAETAQTTVVTVRNRYREQLEAI 313
>gi|448419596|ref|ZP_21580440.1| Cyclin domain-containing protein [Halosarcina pallida JCM 14848]
gi|445674510|gb|ELZ27047.1| Cyclin domain-containing protein [Halosarcina pallida JCM 14848]
Length = 176
Score = 39.7 bits (91), Expect = 4.3, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 21/156 (13%)
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLP-EVDIV 165
DW I GA Y R P+ +A V C V E + LNL+L E ++
Sbjct: 34 DW--IAAGAV-YGTCRCASIIRPVEAIAEVARCSVQE----VKLGYNVLNLELGLETEVQ 86
Query: 166 SMFE---RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ E +V RL R+R + L + +V+ + GR+P V A +
Sbjct: 87 TPIEYIPQVASACRLS----------QRVRSRATELAHLSVEASIANGRKPSAVAAACVY 136
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258
+ ++ +VA V T VT R+RY EL +A
Sbjct: 137 LASQELDTGLRQTDVAAAVDSTPVTVRRRYYELQDA 172
>gi|171185160|ref|YP_001794079.1| transcription initiation factor IIB [Pyrobaculum neutrophilum
V24Sta]
gi|226703639|sp|B1YCX0.1|TF2B_THENV RecName: Full=Transcription initiation factor IIB; Short=TFIIB
gi|170934372|gb|ACB39633.1| Transcription factor TFIIB cyclin-related [Pyrobaculum neutrophilum
V24Sta]
Length = 333
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPTLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>gi|448336885|ref|ZP_21525972.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627223|gb|ELY80548.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 319
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R +D + EV SV + E+GR + + L++ L + R S L
Sbjct: 182 YTACRKEDIPRSLEEVTSVARVEQREIGRTYRYIADELDINLEPTNPRQFVPRFC--SEL 239
Query: 178 QGFTNLDE---SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
T+++ ++DR +QG L +G+ P A + L ++
Sbjct: 240 DVDTDVETKAIEIIDRTTEQG-----------LHSGKSPTGFAAAAIYAAGLLCDETIPQ 288
Query: 235 ENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ TVVT R RY+E LEA+
Sbjct: 289 RAVAETAQTTVVTVRNRYREQLEAI 313
>gi|429217323|ref|YP_007175313.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
gi|429133852|gb|AFZ70864.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Caldisphaera lagunensis DSM
15908]
Length = 317
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 7/208 (3%)
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGAC 116
G L+ EK I ++ K++DEL ++L+ + + M T G ++ A
Sbjct: 116 GRTLSSLEKNINQALKILDELATHMELSNKVREEASKMYRDATQKGLTRGRSIESVVAAT 175
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSR 176
Y R I E+A L+ ++ R I R L L EVDI + + N
Sbjct: 176 LYAACRKLRIPCTIDEIAKHLSIKDNDVKREIARCYRLLVRDL-EVDIPVIEPELFVNRI 234
Query: 177 LQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIEN 236
+ + D + + + +L A T G+ P + A + +G+ +
Sbjct: 235 VSAL-----GLPDYVAVEAIKILREARGKGTTAGKDPSGLAAAAVYLAALKHGLRRTQKE 289
Query: 237 VAKEVHCTVVTCRKRYKELL-EALVKVA 263
VA T VT R RYKE+ EA K++
Sbjct: 290 VAHVAGVTEVTVRNRYKEIAGEAASKLS 317
>gi|395504300|ref|XP_003756493.1| PREDICTED: transcription factor IIIB 90 kDa subunit, partial
[Sarcophilus harrisii]
Length = 619
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 69 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 128
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 129 AHMLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 181
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V + V T RKR E
Sbjct: 182 RTVKEVIRVVKVCESTLRKRLTEF 205
>gi|448512194|ref|ZP_21616308.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
gi|445694514|gb|ELZ46639.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 9100]
Length = 263
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL +L E
Sbjct: 139 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRL----DLSEETER 192
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
R R+ LL A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 193 RARE----LLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIR 248
Query: 250 KRYKELLEA 258
RYKELLEA
Sbjct: 249 NRYKELLEA 257
>gi|435846710|ref|YP_007308960.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
gi|433672978|gb|AGB37170.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natronococcus occultus SP4]
Length = 325
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R + E+++V D EL R ++ L L++ D R +
Sbjct: 188 YAAARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV----- 242
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
++LD + D + LL+ A + + +G+ P+ + A + L V +V
Sbjct: 243 ---SDLD--LSDETERMARELLDSAREEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDV 297
Query: 238 AKEVHCTVVTCRKRYKELLEALVKVAQA 265
++ + VT R RYKELLEA A A
Sbjct: 298 SEVASISEVTIRNRYKELLEASDSAAPA 325
>gi|145338292|ref|NP_187547.2| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
gi|110741698|dbj|BAE98795.1| putative transcription factor [Arabidopsis thaliana]
gi|332641235|gb|AEE74756.1| Cyclin/Brf1-like TBP-binding protein [Arabidopsis thaliana]
Length = 604
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL----NLK 158
F G ++ +C Y+ R + +L + + +S L VYELG + ++ E L N
Sbjct: 110 FTKGRRTELVQASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRN 169
Query: 159 LPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
++ S+F NS L+G N D R ++ + W + TGR+P +
Sbjct: 170 YEKLVDPSIFMDRFSNSLLKGKNNKDVVATAR-----DIIASMKRDW-IQTGRKPSGICG 223
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A L +G+ ++ VH T KR E
Sbjct: 224 AALYTAALSHGIKCSKTDIVNIVHICEATLTKRLIEF 260
>gi|305663777|ref|YP_003860065.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
gi|304378346|gb|ADM28185.1| Transcription initiation factor IIB (TFIIB) [Ignisphaera aggregans
DSM 17230]
Length = 315
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 109/303 (35%), Gaps = 64/303 (21%)
Query: 6 CGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYVHVG 52
C S + +++ G IC G V +AF + + R G P I +H
Sbjct: 17 CPSGNIVYDEVRGEWICADSGEVIAEHVIDRGPEWRAFTAEERERRSRAGAPINIALH-- 74
Query: 53 TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRS---------------IQIKNMIDK 97
+G + +++ ++ + + +D L +L+L R +Q N +++
Sbjct: 75 DSGLSTVIDWYDRD--SAGRRLD-LKRRLELIRIRKWHSRTRIQSTIDRNIVQAMNELER 131
Query: 98 ITDG---------------------EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
I D E G ++ A Y R+ + E++
Sbjct: 132 IADQLNLPRVIVEEATMIYRRAVERELVRGRAIESMVAAALYAACRIHGIPRTLDEISKY 191
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+ R +V L+L++P VD +R+ L G T K +
Sbjct: 192 TKSGRKEVARCYRLLVRELSLRIPIVDAAEYAQRIASMLGLSGATV----------KTAI 241
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
++ A +T GR P + A + LN + VA T VT R RYKEL+
Sbjct: 242 DIIRRARDMGVTAGRDPAGIAAAAVYIAALLNDERRTQKEVASAAGVTEVTVRNRYKELI 301
Query: 257 EAL 259
+ L
Sbjct: 302 KVL 304
>gi|148508035|gb|ABQ75833.1| transcription initiation factor TFB [uncultured haloarchaeon]
Length = 331
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 59/302 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L + G +C CG+V +AFD+ + R G PT
Sbjct: 36 CPEC-SGNLVTDGARGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKSRVGAPTTNLM 94
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G++L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 95 HDKGLSTNIGWRNKDAYGNSLSARQREQMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 153
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+ V
Sbjct: 154 ASA-LGLPENVRETASVIYRRALAEDLLPGRSIEGVATAALYASARQAGTPRSLDEIERV 212
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R VV L L++ D R ++LD + D +Q
Sbjct: 213 SRVEKMELTRTYRYVVRELKLEIEPADPEQYVPRFA--------SDLD--LSDEAERQAR 262
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V+ + + VT R RYKELL
Sbjct: 263 QLLKNAKEAAIHSGKSPVGLAAASVYAAALLTNEKVTQSEVSDVANVSEVTIRNRYKELL 322
Query: 257 EA 258
EA
Sbjct: 323 EA 324
>gi|448369498|ref|ZP_21556050.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
gi|445650673|gb|ELZ03589.1| transcription factor TFIIB cyclin-like protein [Natrialba aegyptia
DSM 13077]
Length = 329
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 34 CPECGGR-LIADDEHAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 92
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 93 HDQGLSTNIGWQDKDAYGKSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 151
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 152 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 210
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
D EL R ++ L L++ D R + ++LD + D +
Sbjct: 211 SRVDKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 260
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 261 ELLESARQEGVHSGKSPVGLAAAGVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 320
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 321 EASDTAAPA 329
>gi|448520817|ref|ZP_21618150.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
gi|445702953|gb|ELZ54892.1| transcription factor TFIIB cyclin-related protein [Halorubrum
distributum JCM 10118]
Length = 267
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL +L E
Sbjct: 143 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRL----DLSEETER 196
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
R R+ LL A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 197 RARE----LLEDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSEVSDVADVSEVTIR 252
Query: 250 KRYKELLEA 258
RYKELLEA
Sbjct: 253 NRYKELLEA 261
>gi|433590514|ref|YP_007280010.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
gi|433305294|gb|AGB31106.1| transcription initiation factor TFIIIB, Brf1 subunit/transcription
initiation factor TFIIB [Natrinema pellirubrum DSM
15624]
Length = 325
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 116/309 (37%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGR-LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNER-FRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 207 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V+ + VT R RYKELL
Sbjct: 257 ELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKELL 316
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 317 EASDTAAPA 325
>gi|345311718|ref|XP_001520037.2| PREDICTED: transcription factor IIIB 50 kDa subunit-like
[Ornithorhynchus anatinus]
Length = 427
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEV---DIVSM 167
+L+G C V R + L + V S+L D+ +VV+ L L +P + D+V
Sbjct: 117 VLVGCCVLVTCRQHNWPLTMGTVCSLLYADLELFSAAYLQVVKLLGLDVPALSLADLVKT 176
Query: 168 FERVIRNSRLQG-----FTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+ + S+ F E ++ R V L+ A +L TGR+P+PV+ A
Sbjct: 177 YCGSFKVSQASPSVPAKFAEDKEKLVSRT----VQLVELASDTWLVTGRQPVPVITAA 230
>gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana]
Length = 600
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFL----NLK 158
F G ++ +C Y+ R + +L + + +S L VYELG + ++ E L N
Sbjct: 110 FTKGRRTELVQASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRN 169
Query: 159 LPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218
++ S+F NS L+G N D R ++ + W + TGR+P +
Sbjct: 170 YEKLVDPSIFMDRFSNSLLKGKNNKDVVATAR-----DIIASMKRDW-IQTGRKPSGICG 223
Query: 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
A L +G+ ++ VH T KR E
Sbjct: 224 AALYTAALSHGIKCSKTDIVNIVHICEATLTKRLIEF 260
>gi|448383049|ref|ZP_21562478.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
gi|445660229|gb|ELZ13026.1| Transcription factor TFIIB cyclin-related protein [Haloterrigena
thermotolerans DSM 11522]
Length = 325
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 116/309 (37%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGR-LVSDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 89 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNER-FRTRDSKERNLKQALGEIDRM 147
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 148 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEISAV 206
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 207 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 256
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V+ + VT R RYKELL
Sbjct: 257 ELLESARQEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSDVASISEVTIRNRYKELL 316
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 317 EASDTAAPA 325
>gi|448300614|ref|ZP_21490613.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445585433|gb|ELY39728.1| transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 323
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L+ + +C CG+V +AFD + R G PT
Sbjct: 28 CPECGGRVLSDAE-HAETVCEDCGLVVEEDEIDRGPEWRAFDAAEKDKKSRVGAPTTNMM 86
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G AL+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 87 HDQGLSTNIGWQDKDAYGRALSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 145
Query: 99 TDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVASV 136
GL D P + A Y R + E+++V
Sbjct: 146 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATASLYASARQASTPRSLDEISAV 204
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 205 SRVEKMELTRTYRYIIRELGLEVKPADPEQYVPRFV--------SDLD--LSDETERMAR 254
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V +V++ + VT R RYKELL
Sbjct: 255 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYKELL 314
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 315 EASDTAAPA 323
>gi|315426667|dbj|BAJ48293.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|315428010|dbj|BAJ49599.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
gi|343485421|dbj|BAJ51075.1| transcription initiation factor TFIIB [Candidatus Caldiarchaeum
subterraneum]
Length = 307
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 151 VVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTG 210
+++ L LK+P D I +++ LD+ R ++ + LLN AVK T G
Sbjct: 204 LLKHLGLKVPVADPS------IYVNKIAAKVGLDQ----RTVQEAIRLLNEAVKRKATVG 253
Query: 211 RRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263
+ P+ + A L + ++ +++AK T VT R R+K L + L VA
Sbjct: 254 KDPVGIAAAALYMACQETTQNLTQKDIAKAAGVTEVTVRNRFKGLKDVLETVA 306
>gi|300711217|ref|YP_003737031.1| transcription factor TFIIB cyclin-like protein [Halalkalicoccus
jeotgali B3]
gi|299124900|gb|ADJ15239.1| Transcription factor TFIIB cyclin-related protein [Halalkalicoccus
jeotgali B3]
Length = 335
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 61/303 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + L + G +C +CG+V +AFD+ + R G PT +
Sbjct: 31 CPECGGR-LETDTEHGETVCSACGLVVEENEIDRGPEWRAFDSAERDQKSRVGAPTTTMM 89
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELT--------FKLDLTGQRSI-QIKNMIDK 97
H G + + ++ K Y SN+ ++ F+ + +R++ Q ID+
Sbjct: 90 H--DKGLSTNIGWQNKDAYGNTLSNRQRQKMQRLRTWNERFRTRNSKERNLKQALGEIDR 147
Query: 98 ITDGEFGLG-----------------DWFPI-----LIGACSYVVMRLDDKSLPISEVAS 135
+ GL D P + A Y R + E+
Sbjct: 148 MASA-LGLPKNVRETASVIYRRALEEDLLPGRSIEGVATASLYAAARQAGTPRSLDEIVQ 206
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D EL R V+ L+L++ D S R D + D +
Sbjct: 207 VSRIDRMELTRTYRYVIRELDLEVQPADPESYVPRFAS----------DLELSDEAEHRA 256
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
LL+ A + + +G+ P+ + A + L V V++ + + VT R RYKEL
Sbjct: 257 RELLSNAKQSGIHSGKSPVGLAAAAVYAAALLTNEKVTQAEVSEVANISEVTIRNRYKEL 316
Query: 256 LEA 258
L+A
Sbjct: 317 LQA 319
>gi|391338244|ref|XP_003743470.1| PREDICTED: transcription initiation factor IIB-like [Metaseiulus
occidentalis]
Length = 314
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 101/286 (35%), Gaps = 48/286 (16%)
Query: 17 SGSLICVSCGVV------------QAFDNYDAQ-------------LYGRDGPTGIYVHV 51
+G +IC CG+V + F N + L G D T I
Sbjct: 27 AGDMICPQCGLVVGDRIVDVGTEWRVFQNEKSSNDPTRVGAAENPLLNGSDLSTIIGRGT 86
Query: 52 GTAG---TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDK-------ITDG 101
G A +G+A K + S++ + ++ G R +N+ID+ + DG
Sbjct: 87 GDASFDESGNAKYANRKTMSSSDRALIGAFREISAMGDRINLTRNIIDRSNALFKQVHDG 146
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
G + AC Y+ R + E+ +V E+GR +++ L +
Sbjct: 147 RSLKGRSNDAIASACLYIACRQESVPRTFKEICAVSKVSKKEIGRCFKLILKALETSVEL 206
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N L T + ++ RK AV+ + GR P+ V A +
Sbjct: 207 ITTGDFMSRFCSNLALS--TAVQKAATHIARK--------AVEMDIVAGRSPISVAAAAI 256
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP 267
+ + + + VT R+ YK++ + AQ P
Sbjct: 257 YMASQASAEKKSQKEIGDIAGVAEVTIRQSYKQMYP---RAAQLFP 299
>gi|302349045|ref|YP_003816683.1| transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
gi|302329457|gb|ADL19652.1| Transcription initiation factor IIB [Acidilobus saccharovorans
345-15]
Length = 318
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 57 GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGAC 116
G L+ EK I ++ K++DE+ +++L + + + T+ G ++ A
Sbjct: 116 GRTLSGIEKNINQALKILDEIATRMELPDRVKEEASKLYRDATEKGLTRGRSIESVVAAT 175
Query: 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITR----VVEFLNLKLPEVDIVSMFERVI 172
Y R I ++A L + R + R +V L + +P ++ R++
Sbjct: 176 LYAACRKLKIPCTIDDIAKNLPSKSADTKREVARCYRLLVRDLGVDIPVIEPELFISRIV 235
Query: 173 RNSRLQGFTNLDES-MLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L + ++ + +L R +GV T G+ P + A + NG+
Sbjct: 236 SALGLPDYITIEAAKILREARNKGV-----------TAGKDPSGLAAAAVYLAALKNGLR 284
Query: 232 VKIENVAKEVHCTVVTCRKRYKELL 256
+ +A T VT R RYKEL+
Sbjct: 285 RTQKEIAHVAGVTEVTVRNRYKELV 309
>gi|222479934|ref|YP_002566171.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
gi|222452836|gb|ACM57101.1| Zinc finger TFIIB-type domain protein [Halorubrum lacusprofundi
ATCC 49239]
Length = 333
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+++V D EL R V+ L L++ D S R + SRL + +
Sbjct: 209 LDEISAVSRVDKMELTRTYRYVIRELKLEIQPADPGSYVPRFV--SRL--------GLSE 258
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
++ LL+ A + +T+G+ P+ + + + L+ V V++ + VT R
Sbjct: 259 ETQRVARELLDSAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSEVADISEVTIR 318
Query: 250 KRYKELLEA 258
RYKELL+A
Sbjct: 319 NRYKELLDA 327
>gi|449502947|ref|XP_002200378.2| PREDICTED: transcription factor IIIB 90 kDa subunit [Taeniopygia
guttata]
Length = 565
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 16 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCINAPAIDPCLYIPRF 75
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 76 AHMLEF-GDKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 128
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V + V T RKR E
Sbjct: 129 RTVKEVIRVVKVCESTLRKRLTEF 152
>gi|448624536|ref|ZP_21670484.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
gi|445749741|gb|EMA01183.1| transcription initiation factor TFB [Haloferax denitrificans ATCC
35960]
Length = 331
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C +T E+ G IC CG+V +AFD+ + R G PT
Sbjct: 37 CPECSGHLVTDEE-HGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNER-FRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL 157
LG P + + V+ R L+D LP + V +Y RM + L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEL 210
Query: 158 ----KLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDESERQARQLLRDAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLE 324
>gi|448585353|ref|ZP_21647746.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
gi|445726053|gb|ELZ77670.1| transcription initiation factor TFB [Haloferax gibbonsii ATCC
33959]
Length = 332
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C +T E+ G IC CG+V +AFD+ + R G PT
Sbjct: 37 CPECSGHLVTDEE-HGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R L+D LP + V +Y RM R ++ L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMAGTPRSLDEL 210
Query: 156 N--LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + V+R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVDKMELTRTYRYVVRELKLEIKPADPEQYVPRFASELGLSDEAERQARKLLRDAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLE 324
>gi|448300851|ref|ZP_21490848.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
gi|445584841|gb|ELY39146.1| Transcription factor TFIIB cyclin-related protein [Natronorubrum
tibetense GA33]
Length = 316
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 10/142 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R +D + EV SV D E+GR + + L++ L + R
Sbjct: 180 YTACRKEDIPRSLEEVTSVSRVDQREIGRTYRYIADELDINLEPTNPRQFVPRFC----- 234
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
+ LD + + + V +++ + L +G+ P A + L ++ V
Sbjct: 235 ---SELD--VGKEVETKAVEIIDTTTEQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAV 289
Query: 238 AKEVHCTVVTCRKRYKELLEAL 259
A TVVT R RY+E LEA+
Sbjct: 290 ADTAQTTVVTVRNRYREQLEAI 311
>gi|448492014|ref|ZP_21608682.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
gi|445692232|gb|ELZ44413.1| transcription factor TFIIB cyclin-related protein [Halorubrum
californiensis DSM 19288]
Length = 208
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E +V + EL R VV L L++ D S R + SRL +L E
Sbjct: 84 LDEFTAVSRVEKMELTRTYRYVVRELGLRVQPADPTSYVPRFV--SRL----DLSEETER 137
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
R R+ LL+ A +T+G+ P+ + A + L+ V V+ + VT R
Sbjct: 138 RARE----LLDDAANAGITSGKSPVGLAAAAVYAAALLSNEKVTQSQVSDVADVSEVTIR 193
Query: 250 KRYKELLEA 258
RYKELLEA
Sbjct: 194 NRYKELLEA 202
>gi|326921138|ref|XP_003206821.1| PREDICTED: transcription factor IIIB 90 kDa subunit-like [Meleagris
gallopavo]
Length = 737
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 188 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 247
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 248 AHMLEF-GDKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 300
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V + V T RKR E
Sbjct: 301 RTVKEVIRVVKVCESTLRKRLTEF 324
>gi|239607291|gb|EEQ84278.1| transcription factor tfiiib complex subunit brf1 [Ajellomyces
dermatitidis ER-3]
Length = 818
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G + GT AG
Sbjct: 53 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQSH 110
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 111 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 169
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 170 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 229
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 230 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 282
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 283 ALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 318
>gi|403284473|ref|XP_003933594.1| PREDICTED: transcription factor IIIB 90 kDa subunit [Saimiri
boliviensis boliviensis]
Length = 623
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 77 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 136
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 137 AHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 189
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 190 RTVKEVISVVKVCESTLRKRLTEF 213
>gi|327284129|ref|XP_003226791.1| PREDICTED: transcription factor IIIB 50 kDa subunit-like [Anolis
carolinensis]
Length = 422
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
I++G C +V R + L + V +L D + + ++ ++L +P + ++ + +
Sbjct: 116 IIVGCCVFVTCRQHNWPLTMGTVCLLLYADKEVFAGVYMQFLKEMSLDVPSLSLIDLVKA 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ + +L Q +++ ++ ++ ++ + ++ + + +L TGRRP+P+V+A +
Sbjct: 176 HLNSFKLFQQSSDIPPKFVEDKEQLVERTIQIVELSSETWLVTGRRPIPIVMAAAFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
L+ + K V +R +EL +++A L W
Sbjct: 236 SLRPLDRFRCTLSEFCKLAGTDVPPPAHRRLRELHNIFLQMASHLAW 282
>gi|448604552|ref|ZP_21657719.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743961|gb|ELZ95441.1| transcription initiation factor TFB [Haloferax sulfurifontis ATCC
BAA-897]
Length = 331
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C +T E+ G IC CG+V +AFD+ + R G PT
Sbjct: 37 CPECSGHLVTDEE-HGETICEECGLVVEDTVVDRGPEWRAFDSAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNER-FRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNL 157
LG P + + V+ R L+D LP + V +Y RM + L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATAALYASARMASTPRSLDEL 210
Query: 158 ----KLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDESERQARQLLRDAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGVHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLE 324
>gi|448717212|ref|ZP_21702667.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
gi|445786016|gb|EMA36792.1| transcription factor TFIIB cyclin-like protein [Halobiforma
nitratireducens JCM 10879]
Length = 322
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+A+V D E+ R +V L L + D + R SRL+ +
Sbjct: 199 PVDELATVSRIDYLEVTRAYRYLVRELELPMSPPDPLEYVPRYA--SRLE--------LS 248
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ + +L+ V+ + +G+ P+ + A L L G S+ V+ + VT
Sbjct: 249 NETERTAREILDAGVREGVHSGKHPVGLAAAALYAASRLTGESLTQNEVSATADVSKVTI 308
Query: 249 RKRYKELL 256
R RY+ELL
Sbjct: 309 RNRYQELL 316
>gi|327356251|gb|EGE85108.1| transcription factor TFIIIB complex subunit brf1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 820
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 111/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT---AGT-- 56
P C + + +D G +C CG V + N +++ + +G + GT AG
Sbjct: 53 PNPGCPAPNIVEDD--GMKVCSGCGTVVSEANIVSEITFGESASGAAIVQGTFVGAGQTH 110
Query: 57 ----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
G + +E N+ I +L+ L++ + + + + K+ G F
Sbjct: 111 GRSFGPGFQRGGGMESREITEQNGNRYIAQLSRALNVP-ESATKAAGQVFKLAVGLNFIQ 169
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C Y+ R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 170 GRRTKTVAAVCLYIACRRQDGNTVMLIDFADVLMINVFKLGRAYKALLDELRLGGNVFIM 229
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 230 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 282
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 283 ALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 318
>gi|448681685|ref|ZP_21691776.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445767555|gb|EMA18658.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
Length = 324
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S +L + G +C CG+V +AFD+ + R G PT
Sbjct: 30 CPEC-SGSLLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 89 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 145
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 146 RMASALG--LPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A V + E+ R VV L+L++ D S R + +L E + R R+
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLEIQPADPESYVPRFASD------LDLSEEVERRARQ 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 258 ----LLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSEVSEVANISEVTIRNRYH 313
Query: 254 ELLEA 258
ELLEA
Sbjct: 314 ELLEA 318
>gi|55376477|ref|YP_134329.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448690641|ref|ZP_21695802.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55229202|gb|AAV44623.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445776603|gb|EMA27580.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 320
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 118/300 (39%), Gaps = 49/300 (16%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C +TR SG C SCG+V +AF + + R G PT +
Sbjct: 27 CPECQGH-ITRTSDSGEATCESCGLVFEDNPIDHGPEWRAFTSEERDEKSRVGAPTTQLM 85
Query: 50 HVGTAGT----------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
H T G A++ +++ + + DE F+ +R++ K + +I+
Sbjct: 86 HDKGLSTTIGWQDKDAYGQAVSGRKRAQLQRLRTWDE-RFRTKDAHERNL--KQALGEIS 142
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGR---MITRVVEF 154
LG P + + V+ R ++ LP + + +Y R M + EF
Sbjct: 143 RMASALG--LPESVRETAGVLYRRAVEQNLLPGRSIEGMSTASLYAAARQHGMPRPLTEF 200
Query: 155 LNL-KLPEVDIVSMFERVIRNSRL------------QGFTNLDESMLDRMRKQGVLLLNC 201
++ ++ ++ I + + R L Q ++LD S D ++ LL
Sbjct: 201 ADVSRVEKIRIQRAYRYLSRELGLEIEPEDPMQYIPQFASSLDVS--DEAERRSRELLEV 258
Query: 202 AVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261
A + +G+ P + A L L + E V++ H + VT R RY+ELLE +
Sbjct: 259 ATDNAVHSGKSPAGLAAAALYAATHLTNEQLTQETVSEVAHVSRVTIRNRYQELLEVYAQ 318
>gi|402877360|ref|XP_003902397.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Papio anubis]
Length = 650
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 104 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 163
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 164 AHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 216
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 217 RTVKEVISVVKVCESTLRKRLTEF 240
>gi|41054023|ref|NP_956192.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIBa [Danio rerio]
gi|28422474|gb|AAH46877.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB [Danio rerio]
gi|182889790|gb|AAI65640.1| Brf1 protein [Danio rerio]
Length = 661
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 54/275 (19%), Positives = 94/275 (34%), Gaps = 35/275 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDGPTG 46
C +CG + + G +C+ CG V + Q D
Sbjct: 4 CKTCGGTDIDVDQARGVAVCMGCGSVLEDNIIVSEVTFVESGGGGSSAVGQFVAGDASGN 63
Query: 47 IYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ G T + + + + I+ L +L + N G
Sbjct: 64 VPSLGGNFQTSVGRESRAATLQNAKRQINHLGHQLQMNQHCLDTAFNFYKMALSKHLTKG 123
Query: 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVD--- 163
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 124 RKSTHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLVLARELCINAPAIDPCL 183
Query: 164 IVSMFERVI---RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+ F +++ S T L +L RM++ W + TGRRP + A
Sbjct: 184 YIPRFAQLLEFGEKSHEVSMTAL--RLLQRMKRD----------W-MHTGRRPSGLCGAA 230
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ I+ V V T RKR E
Sbjct: 231 LLVAARMHEFRRTIKEVISVVKVCEATLRKRLYEF 265
>gi|338753410|ref|NP_001229717.1| transcription factor IIIB 90 kDa subunit isoform 6 [Homo sapiens]
gi|397470869|ref|XP_003807034.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 3 [Pan
paniscus]
gi|56270588|gb|AAH86856.1| BRF1 protein [Homo sapiens]
Length = 650
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 104 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 163
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 164 AHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 216
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 217 RTVKEVISVVKVCESTLRKRLTEF 240
>gi|255942361|ref|XP_002561949.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586682|emb|CAP94327.1| Pc18g01030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 739
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 109/275 (39%), Gaps = 30/275 (10%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------HV 51
C + G D G +C CG V + +N +++ + +G V HV
Sbjct: 57 CPNPGCPAPHIVDDGGMKVCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHV 116
Query: 52 GTAGTG----SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLG 106
+ G G A+ +E N+ + +L+ L + + + + + K+ G F G
Sbjct: 117 RSYGPGFQRGGAMESREMTEQNGNRYMLQLSRALTIP-ESATKAAGQVFKLAVGLNFIQG 175
Query: 107 DWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LP 160
+ C Y+ R + ++ + + A VL +V++LGR +++ L L +
Sbjct: 176 RRTKTVAAVCLYIACRRQNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMN 235
Query: 161 EVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAV 220
+D S+ R + S++ + + V ++ + ++TTGRRP + A
Sbjct: 236 PIDPESLIYRFAKQ------LEFGPSLM-AVAGEAVRIVQRMNRDWMTTGRRPAGLCGAA 288
Query: 221 LVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T T +R E
Sbjct: 289 LILAARMNNFRRTVREVVYIVKVTETTISQRLNEF 323
>gi|425768851|gb|EKV07363.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum Pd1]
gi|425770184|gb|EKV08657.1| Transcription factor TFIIIB complex subunit Brf1, putative
[Penicillium digitatum PHI26]
Length = 740
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 106/263 (40%), Gaps = 30/263 (11%)
Query: 15 DISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV-----------HVGTAGTG----SA 59
D G +C CG V + +N +++ + +G V HV + G G A
Sbjct: 69 DDGGVKVCTGCGTVISENNIVSEVTFGESSSGAAVVQGSFVGEDQTHVRSYGPGFQRGGA 128
Query: 60 LNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLGDWFPILIGACSY 118
+ +E N+ + +L+ L + + + + + K+ G F G + C Y
Sbjct: 129 MESREMTEQNGNRYMLQLSRALTIP-ESATKAAGQVFKLAVGLNFIQGRRTKTVAAVCLY 187
Query: 119 VV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----LPEVDIVSMFERVI 172
+ R + ++ + + A VL +V++LGR +++ L L + +D S+ R
Sbjct: 188 IACRRQNGNTVMLIDFADVLMINVFKLGRTYKALLDELRLGGNVFLMNPIDPESLIYRFA 247
Query: 173 RNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSV 232
+ S++ + + V ++ + ++TTGRRP + A L+ +N
Sbjct: 248 KQ------LEFGPSLMA-VAGEAVRIVQRMNRDWMTTGRRPAGLCGAALILAARMNNFRR 300
Query: 233 KIENVAKEVHCTVVTCRKRYKEL 255
+ V V T T +R E
Sbjct: 301 TVREVVYIVKVTETTISQRLNEF 323
>gi|448666488|ref|ZP_21685133.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
gi|445771619|gb|EMA22675.1| transcription initiation factor IIB [Haloarcula amylolytica JCM
13557]
Length = 322
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R+ + E+A V + EL R +V L+L++ D R I
Sbjct: 187 YAAARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEHYLPRFIS---- 242
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
D + + ++Q L+ A + + +G+ P+ + A + L V V
Sbjct: 243 ------DLGLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQV 296
Query: 238 AKEVHCTVVTCRKRYKELLEA 258
+ + VT R RYKELLEA
Sbjct: 297 SDVADISEVTIRNRYKELLEA 317
>gi|344212001|ref|YP_004796321.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
gi|343783356|gb|AEM57333.1| transcription initiation factor IIB [Haloarcula hispanica ATCC
33960]
Length = 322
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R+ + E+A V + EL R +V L+L++ D R I
Sbjct: 187 YAAARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEHYLPRFIS---- 242
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
D + + ++Q L+ A + + +G+ P+ + A + L V V
Sbjct: 243 ------DLGLSEETQRQARDLIEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQV 296
Query: 238 AKEVHCTVVTCRKRYKELLEA 258
+ + VT R RYKELLEA
Sbjct: 297 SDVADISEVTIRNRYKELLEA 317
>gi|448455066|ref|ZP_21594392.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
gi|445814181|gb|EMA64149.1| Zinc finger TFIIB-type domain protein [Halorubrum lipolyticum DSM
21995]
Length = 333
Score = 38.5 bits (88), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 122 RLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFT 181
R D + E +V D EL R V+ L L++ D S R + SRL
Sbjct: 201 RQDGNPRSLDEFTAVSRVDKMELTRTYRYVIRELKLEIQPADPESYVPRFV--SRL---- 254
Query: 182 NLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEV 241
+L E R+ LL+ A + +T+G+ P+ + + + L+ V V+
Sbjct: 255 DLSEETQRLARE----LLDGAKRAGITSGKSPVGLAASAVYAAALLSNEKVTQSQVSAVA 310
Query: 242 HCTVVTCRKRYKELLEA 258
+ VT R RYKELL+A
Sbjct: 311 DISEVTIRNRYKELLDA 327
>gi|410963031|ref|XP_003988070.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Felis catus]
Length = 587
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 16 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 75
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 76 AHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 128
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 129 RTVKEVISVVKVCESTLRKRLTEF 152
>gi|297696024|ref|XP_002825220.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2
[Pongo abelii]
Length = 650
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 104 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 163
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 164 AHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 216
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 217 RTVKEVISVVKVCESTLRKRLTEF 240
>gi|303317508|ref|XP_003068756.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108437|gb|EER26611.1| Transcription factor TFIIB repeat containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320038733|gb|EFW20668.1| transcription factor tfiiib complex subunit brf1 [Coccidioides
posadasii str. Silveira]
Length = 805
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT-------- 53
P C + + +D G +C CG V + N +++ + +G V GT
Sbjct: 51 PNPGCPAPNIVEDD--GQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSH 108
Query: 54 -AGTGSALNY----KEKKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
TG + ++I E N + I +L+ L++ + + + + K+ G F
Sbjct: 109 GRSTGPGFQRGGGVESREITEQNGNRYIAQLSRALNIP-ESASKAAGQVFKLAVGLNFIQ 167
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C YV R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 168 GRRTKTVAAICLYVACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIM 227
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 228 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 280
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 281 ALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 316
>gi|126459199|ref|YP_001055477.1| transcription initiation factor IIB [Pyrobaculum calidifontis JCM
11548]
gi|126248920|gb|ABO08011.1| Transcription initiation factor IIB (TFIIB) [Pyrobaculum
calidifontis JCM 11548]
Length = 331
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G E++
Sbjct: 204 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG-----EAI- 257
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
K + +L A K +T G+ P + A + + G + ++ A T VT
Sbjct: 258 ----KLAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMLGDNKTQKDFAVAAGVTEVTV 313
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 314 RNRYKELAKAL 324
>gi|448358436|ref|ZP_21547118.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
gi|445646069|gb|ELY99061.1| transcription factor TFIIB cyclin-like protein [Natrialba
chahannaoensis JCM 10990]
Length = 352
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E+A V + E+ R V+ L L++ D VS R
Sbjct: 213 ASLYASARQAGTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVKPADPVSYVPRFA-- 270
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
++LD + D ++ LL A + + +G+ P+ + A + L V
Sbjct: 271 ------SDLD--LSDETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQ 322
Query: 235 ENVAKEVHCTVVTCRKRYKELLEA 258
+V++ + VT R RY ELLEA
Sbjct: 323 NDVSEVASISEVTIRNRYHELLEA 346
>gi|289583194|ref|YP_003481660.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|448283340|ref|ZP_21474616.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
gi|289532747|gb|ADD07098.1| Transcription factor TFIIB cyclin-related protein [Natrialba
magadii ATCC 43099]
gi|445574256|gb|ELY28759.1| transcription factor TFIIB cyclin-like protein [Natrialba magadii
ATCC 43099]
Length = 349
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E+A V + E+ R V+ L L++ D VS R
Sbjct: 210 ASLYASARQAGTPRSLDEIAGVSRVEKDEIARTYRYVIRELGLEVQPADPVSYVPRFA-- 267
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
++LD + D ++ LL A + + +G+ P+ + A + L V
Sbjct: 268 ------SDLD--LSDETERRARQLLETAKESGIHSGKSPVGLAAAAVYAGALLTNEKVTQ 319
Query: 235 ENVAKEVHCTVVTCRKRYKELLEA 258
+V++ + VT R RY ELLEA
Sbjct: 320 NDVSEVASISEVTIRNRYHELLEA 343
>gi|355673453|gb|AER95177.1| BRF1-like protein, subunit of RNA polymerase III transcription
initiation factor IIIB [Mustela putorius furo]
Length = 610
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 14/210 (6%)
Query: 46 GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
G +V++G L ++I+ L +L L N
Sbjct: 6 GFHVNLGKESRAQTLQNGRRQIHH-------LGSQLQLNQHCLDTAFNFFKMAVSKHLTR 58
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G +I AC Y+V R + + +++ +L +VY LG+ + L + P +D
Sbjct: 59 GRRMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPC 118
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
R G N + SM + LL + ++ TGRRP + A L+
Sbjct: 119 LYIPRFAHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAA 171
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
++ ++ V V T RKR E
Sbjct: 172 RMHDFRRTVKEVISVVKVCESTLRKRLTEF 201
>gi|448345937|ref|ZP_21534826.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
gi|445633870|gb|ELY87057.1| Transcription factor TFIIB cyclin-related protein [Natrinema
altunense JCM 12890]
Length = 326
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 31 CPECGGR-LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 149 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 207
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 257
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 258 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 317
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 318 EASDTAAPA 326
>gi|448336782|ref|ZP_21525873.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
gi|445627873|gb|ELY81188.1| Transcription factor TFIIB cyclin-related protein [Natrinema
pallidum DSM 3751]
Length = 326
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 118/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + L +D +C CG+V +AFD + R G PT
Sbjct: 31 CPECGGR-LISDDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 149 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 207
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 257
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 258 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 317
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 318 EASDTAAPA 326
>gi|170594171|ref|XP_001901837.1| Transcription initiation factor IIB [Brugia malayi]
gi|158590781|gb|EDP29396.1| Transcription initiation factor IIB, putative [Brugia malayi]
Length = 309
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 50/273 (18%), Positives = 98/273 (35%), Gaps = 38/273 (13%)
Query: 11 LTREDISGSLICVSCGVV------------QAFDNYDAQ-------------LYGRDGPT 45
L + +G LIC CG+V ++F N + L D T
Sbjct: 23 LVEDHRAGDLICPECGLVVGDRLVDVGTEWRSFSNEKSGADPSRVGAPENPLLGSADLST 82
Query: 46 GIYVHVGTAGTGSA---LNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGE 102
I V G + T + +N ++++ + +I E++ ++ L + + D +
Sbjct: 83 SIAVGFGGSETNAQRKNMNNMDRQMSQGLSVIREMSARIHLPKSIEDGAAKIFKDVLDSK 142
Query: 103 FGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEV 162
G AC Y+ R + E+ + E+GR +++ L L ++
Sbjct: 143 ALRGKNNEAQAAACLYIACRKEGVPRTFKEICAASRVSKKEIGRCFKLIIKSLETSLEQI 202
Query: 163 DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
R N G + ++ R+ K+ AV+ L GR P+ + A +
Sbjct: 203 TSADFMSRFCGN---LGLPHSIQAAATRIAKK-------AVELDLVAGRSPISIAAAAIY 252
Query: 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + + + + VT ++ YK L
Sbjct: 253 MASQASSNKKTAKEIGEIAGAAEVTVKQTYKLL 285
>gi|119186801|ref|XP_001244007.1| hypothetical protein CIMG_03448 [Coccidioides immitis RS]
gi|392870729|gb|EAS32553.2| transcription factor TFIIIB complex subunit brf1 [Coccidioides
immitis RS]
Length = 804
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 112/276 (40%), Gaps = 32/276 (11%)
Query: 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVGT-------- 53
P C + + +D G +C CG V + N +++ + +G V GT
Sbjct: 51 PNPGCPAPNIVEDD--GQKVCSGCGTVISEANIVSEITFGESSSGAAVVQGTFIGADQSH 108
Query: 54 -AGTGSALNY----KEKKIYESN--KLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGL 105
TG + ++I E N + I +L+ L++ + + + + K+ G F
Sbjct: 109 GRSTGPGFQRGGGVESREITEQNGNRYIAQLSRALNIP-ESASKAAGQVFKLAVGLNFIQ 167
Query: 106 GDWFPILIGACSYVV-MRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK-----L 159
G + C YV R D ++ + + A VL +V++LGR +++ L L +
Sbjct: 168 GRRTKTVAAICLYVACRRQDGNTIMLIDFADVLMINVFKLGRTYKALLDELRLGGNIFIM 227
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
+D S+ R + SM+ ++ + V ++ + ++ TGRRP + A
Sbjct: 228 NPIDPESLIYRFAKQ------LEFGSSMM-QVASEAVRIVQRMNRDWMITGRRPAGICGA 280
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ +N + V V T +T +R E
Sbjct: 281 ALILAARMNNFRRTVREVVYVVKVTELTIHQRLNEF 316
>gi|448309192|ref|ZP_21499054.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
gi|445591113|gb|ELY45322.1| transcription factor TFIIB cyclin-like protein [Natronorubrum
bangense JCM 10635]
Length = 316
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R +D + EV +V D E+GR + + L++ L + R S L
Sbjct: 180 YTACRKEDIPRSLEEVTAVSRVDQREIGRTYRYIADELDINLEPTNPRQFVPRFC--SEL 237
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
N+D+ + + V +++ + L +G+ P A + L ++ V
Sbjct: 238 ----NVDKDV----ETKAVEIIDQTTQQGLHSGKSPTGFAAAAIYAAGLLCDETIPQRAV 289
Query: 238 AKEVHCTVVTCRKRYKELLEAL 259
A TVVT R RY+E LEA+
Sbjct: 290 ADTAQTTVVTVRNRYREQLEAI 311
>gi|397773294|ref|YP_006540840.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|448340933|ref|ZP_21529900.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
gi|397682387|gb|AFO56764.1| Transcription factor TFIIB cyclin-related protein [Natrinema sp.
J7-2]
gi|445629271|gb|ELY82562.1| Transcription factor TFIIB cyclin-related protein [Natrinema gari
JCM 14663]
Length = 326
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 59/309 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + ++ +D +C CG+V +AFD + R G PT
Sbjct: 31 CPECGGRLIS-DDEHAETVCTDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 89
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSI-QIKNMIDKI 98
G+ ++G G +L+ ++++ + + +E F+ + +R++ Q ID++
Sbjct: 90 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNE-RFRTRDSKERNLKQALGEIDRM 148
Query: 99 TDGEFGLG-----------------DWFP--ILIGACS---YVVMRLDDKSLPISEVASV 136
GL D P + G + Y R + E+++V
Sbjct: 149 ASA-LGLPENVRETASVIYRRALEEDLLPGRSIEGVATSSLYAAARQAGTPRSLDEISAV 207
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
+ EL R ++ L L++ D R + ++LD + D +
Sbjct: 208 SRVEKMELTRTYRYIIRELGLEVKPADPEHYVPRFV--------SDLD--LSDETERMAR 257
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
LL A + + +G+ P+ + A + L V V++ + VT R RYKELL
Sbjct: 258 ELLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNEVSEVASISEVTIRNRYKELL 317
Query: 257 EALVKVAQA 265
EA A A
Sbjct: 318 EASDTAAPA 326
>gi|448333191|ref|ZP_21522402.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
gi|445623529|gb|ELY76934.1| transcription initiation factor IIB [Natrinema pellirubrum DSM
15624]
Length = 370
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E+++V + E+ R VV L L++ D S R
Sbjct: 231 ASLYAAARQAGTPRSLDEISAVSRVEKAEIARTYRYVVRELGLEVQPADPESYVPRFA-- 288
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
++LD + D ++ LL+ A + + +G+ P+ + A + L V
Sbjct: 289 ------SDLD--LADETERRAHDLLSTAKERGVHSGKSPVGLAAAAVYAAALLTNEKVTQ 340
Query: 235 ENVAKEVHCTVVTCRKRYKELLEA 258
+V+ + VT R RYKELLEA
Sbjct: 341 NDVSDVASISEVTIRNRYKELLEA 364
>gi|440791418|gb|ELR12656.1| hypothetical protein ACA1_091660 [Acanthamoeba castellanii str.
Neff]
Length = 623
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 9/171 (5%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
L GA Y V R ++K + + VA + Y +G+ T++ LN+ EVD + E
Sbjct: 176 LAGAIIYAVCREEEKPVTLGTVAMAVGEGPYAVGKSFTQMKRHLNIGNHEVDPILFIEPA 235
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLN-CAVKWFLTTGRRPMPVVVAVLVFVVELNGV 230
+ S+L+ L +R + +L A K ++ GR V +A ++ E + +
Sbjct: 236 V--SKLK----LSTPERKALRNLAIAILEYIADKEWIMEGRVRAGVALASVMLAAEFSKI 289
Query: 231 SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA-QALPWGKDVTVKNVLKN 280
+ + + + T ++R EL +A+++ A + LP+ + L +
Sbjct: 290 KISPQ-LMMHPDVKLRTVKERVAELKKAMIRCADEYLPFPSGTVTRQNLHH 339
>gi|410963029|ref|XP_003988069.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1
[Felis catus]
Length = 563
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 16 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 75
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 76 AHLLEF-GEKNHEVSMT------ALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 128
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 129 RTVKEVISVVKVCESTLRKRLTEF 152
>gi|338753408|ref|NP_001229716.1| transcription factor IIIB 90 kDa subunit isoform 5 [Homo sapiens]
gi|332843232|ref|XP_510208.3| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 2 [Pan
troglodytes]
gi|397470865|ref|XP_003807032.1| PREDICTED: transcription factor IIIB 90 kDa subunit isoform 1 [Pan
paniscus]
gi|119602317|gb|EAW81911.1| BRF1 homolog, subunit of RNA polymerase III transcription
initiation factor IIIB (S. cerevisiae), isoform CRA_e
[Homo sapiens]
gi|194380648|dbj|BAG58477.1| unnamed protein product [Homo sapiens]
Length = 562
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I AC Y+V R + + +++ +L +VY LG+ + L + P +D R
Sbjct: 16 VIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRF 75
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
G N + SM + LL + ++ TGRRP + A L+ ++
Sbjct: 76 AHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFR 128
Query: 232 VKIENVAKEVHCTVVTCRKRYKEL 255
++ V V T RKR E
Sbjct: 129 RTVKEVISVVKVCESTLRKRLTEF 152
>gi|448473771|ref|ZP_21601913.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
gi|445819283|gb|EMA69132.1| transcription factor TFIIB cyclin-related protein [Halorubrum
aidingense JCM 13560]
Length = 353
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 10/149 (6%)
Query: 115 ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRN 174
A Y R + E+A+V + E+ R VV L L++ D S R
Sbjct: 213 ASLYAAARQAGTPRSLDEIAAVSRVEKDEIARTYRYVVRELKLEIQPADPESYVPRFAS- 271
Query: 175 SRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKI 234
D + D ++ LL+ A + +G+ P+ + A + L V
Sbjct: 272 ---------DLGLSDEAERRARSLLDTAKAQGIHSGKSPVGLAAAAVYAASLLVNEKVTQ 322
Query: 235 ENVAKEVHCTVVTCRKRYKELLEALVKVA 263
V++ + + VT R RY ELLEA VA
Sbjct: 323 SEVSEVANISEVTIRNRYHELLEAEDDVA 351
>gi|448629133|ref|ZP_21672532.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
gi|445757699|gb|EMA09040.1| transcription initiation factor IIB [Haloarcula vallismortis ATCC
29715]
Length = 324
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 121/305 (39%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L + G +C CG+V +AFD+ + R G PT
Sbjct: 30 CPEC-SGALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 89 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 145
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 146 RMASALG--LPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A V + E+ R VV L+L++ D S R + +L E + R R+
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLEIQPADPESYVPRFASD------LDLSEEVERRARQ 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 258 ----LLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYH 313
Query: 254 ELLEA 258
ELLEA
Sbjct: 314 ELLEA 318
>gi|448677609|ref|ZP_21688799.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|448687989|ref|ZP_21693957.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|445773284|gb|EMA24317.1| transcription initiation factor IIB [Haloarcula argentinensis DSM
12282]
gi|445779780|gb|EMA30696.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 322
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 118 YVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL 177
Y R+ + E+A V + EL R +V L+L++ D R I
Sbjct: 187 YAAARMAGNPRSLDEMARVSRVEKMELTRTYRYIVRELSLEVQPADPEHYLPRFIS---- 242
Query: 178 QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237
D + + ++Q L+ A + + +G+ P+ + A + L V V
Sbjct: 243 ------DLGLSEETQRQARDLVEGARQSGMLSGKSPVGIAAAAVYAAALLTNEKVTQSQV 296
Query: 238 AKEVHCTVVTCRKRYKELLEA 258
+ + VT R RYKELLEA
Sbjct: 297 SDVADISEVTIRNRYKELLEA 317
>gi|448321391|ref|ZP_21510871.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
gi|445604251|gb|ELY58202.1| transcription factor TFIIB cyclin-like protein [Natronococcus
amylolyticus DSM 10524]
Length = 325
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 65/312 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C CG + ++ + +C CG+V +AFD + R G PT
Sbjct: 30 CPECGGRVISDTE-HAETVCQDCGLVVEEDEIDRGPEWRAFDAAEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 89 HDQGLSTNIGWQDKDAYGRSLSSRQRQKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 145
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R L++ LP + E+
Sbjct: 146 RMASALG--LPENVRETASVIYRRALEEDLLPGRSIEGVATAALYAAARQAGTPRSLDEI 203
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
++V D EL R V+ L L++ D R + ++LD + D +
Sbjct: 204 SAVSRVDKMELTRTYRYVIRELGLEVQPADPEHYVPRFV--------SDLD--LSDETER 253
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V +V++ + VT R RYK
Sbjct: 254 MARDLLESARQEGVHSGKSPVGLAAAAVYAAALLTNEKVTQNDVSEVASISEVTIRNRYK 313
Query: 254 ELLEALVKVAQA 265
ELLEA A A
Sbjct: 314 ELLEASDSAAPA 325
>gi|55378144|ref|YP_135994.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|448636768|ref|ZP_21675216.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|448648512|ref|ZP_21679643.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|448685471|ref|ZP_21693463.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
gi|55230869|gb|AAV46288.1| transcription initiation factor IIB [Haloarcula marismortui ATCC
43049]
gi|445765074|gb|EMA16213.1| transcription initiation factor IIB [Haloarcula sinaiiensis ATCC
33800]
gi|445775613|gb|EMA26623.1| transcription initiation factor IIB [Haloarcula californiae ATCC
33799]
gi|445782082|gb|EMA32933.1| transcription initiation factor IIB [Haloarcula japonica DSM 6131]
Length = 324
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 121/305 (39%), Gaps = 65/305 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C S L + G +C CG+V +AFD+ + R G PT
Sbjct: 30 CPEC-SGALLSDSERGETVCEDCGLVVEEDEIDPGPEWRAFDSKEKDEKSRVGAPTTNMM 88
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G++L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 89 HDKGLSTNIGWQDKDAYGNSLSSRQREKMQRLRTWNE-RFRTRDSKERNL--KQALGEID 145
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------ISEV 133
LG P + + V+ R LD+ LP + E+
Sbjct: 146 RMASALG--LPENVRETASVIYRRALDEDLLPGRSIEGVSTASLYAAARQAGTPRSLDEI 203
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
A V + E+ R VV L+L++ D S R + +L E + R R+
Sbjct: 204 AGVSRVEKDEIARTYRYVVRELSLEIQPADPESYVPRFASD------LDLSEEVERRARQ 257
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
LL A + + +G+ P+ + A + L V V++ + + VT R RY
Sbjct: 258 ----LLQNAKQEGVHSGKSPVGLAAAAVYAASLLTNEKVTQSQVSEVANISEVTIRNRYH 313
Query: 254 ELLEA 258
ELLEA
Sbjct: 314 ELLEA 318
>gi|82617153|emb|CAI64060.1| probable transcription initiation factor IIB [uncultured archaeon]
gi|82617265|emb|CAI64171.1| probable transcription initiation factor IIB [uncultured archaeon]
Length = 306
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 36/283 (12%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIY-V 49
C CGSK + + L C CGVV +++D A R GP Y +
Sbjct: 15 CPECGSKNVITDSRHAELYCADCGVVIAENIVDLGPEWRSYDEEQASKRIRTGPPMSYRI 74
Query: 50 HVGTAGT-------------GSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMID 96
H GT G +++ +K + + ID + L L +
Sbjct: 75 HDKGLGTPTPGLPARTRRLRGISIDSSDKTLAFALVEIDRMACALGLPNNIKEATSVLYR 134
Query: 97 KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN 156
K G L+ A Y+ R + E+A V + ++ R ++ L
Sbjct: 135 KAMKRGLIKGRSIEELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLLRRLE 194
Query: 157 LKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPV 216
+KL D R L +R++ +++L + G P+
Sbjct: 195 IKLAPADPARYIPRFCSKLGLSA----------EIREKAMVILQDDDGTGMAKGWGPIGT 244
Query: 217 VVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
A + L+G + +AK T +T R RYKEL++ L
Sbjct: 245 AAAAIYIATVLSGEYRTEKEIAKVAGTTEITIRDRYKELVKRL 287
>gi|385805988|ref|YP_005842386.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
gi|383795851|gb|AFH42934.1| Transcription initiation factor IIB (TFIIB) [Fervidicoccus fontis
Kam940]
Length = 316
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
+I A YV RL + E++ + E+ R +V+ L LK+P D + R+
Sbjct: 171 VIAASVYVACRLKKLPRTLDEISLHTRANRKEIARCYRLLVKELQLKVPIADPIDYIPRM 230
Query: 172 IRNSRLQGFTNLDESMLDRMRKQ---GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELN 228
S+LD K ++ A + LT G+ P + A + L
Sbjct: 231 -------------GSLLDLSGKAMNIAARIVKIAKQKALTAGKDPAGLAAAAIYVATLLE 277
Query: 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
+ +A T VT R RYKEL+ L
Sbjct: 278 NEKRTQKEIANIAGVTEVTVRNRYKELVNEL 308
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,012,387,366
Number of Sequences: 23463169
Number of extensions: 336184234
Number of successful extensions: 780931
Number of sequences better than 100.0: 813
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 736
Number of HSP's that attempted gapping in prelim test: 779826
Number of HSP's gapped (non-prelim): 1157
length of query: 530
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 383
effective length of database: 8,910,109,524
effective search space: 3412571947692
effective search space used: 3412571947692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)