BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047665
(530 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8KBY2|BRF2_DANRE Transcription factor IIIB 50 kDa subunit OS=Danio rerio GN=brf2
PE=2 SV=1
Length = 423
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
IL G C + + R + + + + +L+ D Y++G + + + LNL+ +V I M E
Sbjct: 114 ILAGCCMFHICRQNSWPVFMGTIGYLLDADNYQMGTIYQELTKSLNLQTTQVCITRMLES 173
Query: 171 VIRNSRL------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPV-VVAVLVF 223
+ +L + F+ + ++D Q LL A ++ TGRRP P+ + AV V
Sbjct: 174 FCYDFKLAPDEVEEVFSVAQQRLVD----QTSALLELAADTWILTGRRPFPLFLAAVYVA 229
Query: 224 VVELNGVS---------VKIENVAKEVHC-TVVTCRKRYKELLEALVKVAQALPWGKDVT 273
LN ++ KI +++ C + T KR ELLE L K+ + LPW +
Sbjct: 230 WQSLNPLARMKYSLMKFCKIAKAPEQLWCKSKDTINKRLNELLEVLCKLGRELPWVRPTD 289
Query: 274 ---------VKNVLKNAPFVMNYMEMKSMEKRKEERDGLNCGGIDLGDVVS 315
V+++LK+ ++ + +K EK+ EE +L D S
Sbjct: 290 IQMNTVTTLVEDILKHRKALL-ILAVKHYEKQLEETQTSQYSESELSDSKS 339
>sp|P61999|TF2B_PYRWO Transcription initiation factor IIB OS=Pyrococcus woesei GN=tfb
PE=1 SV=1
Length = 300
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C +C S L + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRERRSRTGAPESILL 66
Query: 50 H-------VGTAGTGSAL------------------NYKEKKIYESNKLIDELTFKLDLT 84
H +G + S L + E+ + + +D +T +L L
Sbjct: 67 HDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G ++ AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L+ A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILDEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>sp|P61998|TF2B_PYRFU Transcription initiation factor IIB OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=tfb PE=1 SV=1
Length = 300
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 114/295 (38%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C +C S L + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPACESAELIYDPERGEIVCAKCGYVIEENIIDMGPEWRAFDASQRERRSRTGAPESILL 66
Query: 50 H-------VGTAGTGSAL------------------NYKEKKIYESNKLIDELTFKLDLT 84
H +G + S L + E+ + + +D +T +L L
Sbjct: 67 HDKGLSTEIGIDRSLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G ++ AC Y RL + E+A + D E+
Sbjct: 127 RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L+ A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILDEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>sp|Q9V0V5|TF2B_PYRAB Transcription initiation factor IIB OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=tfb PE=3 SV=1
Length = 300
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 110/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIVDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + + E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A K
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYK 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>sp|Q5JGN1|TF2B1_PYRKO Transcription initiation factor IIB 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb1 PE=3
SV=1
Length = 300
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 108/295 (36%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAFDPGQREKRARVGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D L L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLASNLSLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E+A V D E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSRVDKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A +
Sbjct: 187 GRSFRFIARHLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYQ 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L + G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>sp|O59151|TF2B_PYRHO Transcription initiation factor IIB OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=tfb PE=3 SV=1
Length = 300
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/295 (23%), Positives = 110/295 (37%), Gaps = 46/295 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AFD + R G P I +
Sbjct: 7 CPVCGSTEFIYDPERGEIVCARCGYVIEENIIDMGPEWRAFDASQREKRSRTGAPESILL 66
Query: 50 HVGTAGTGSALNYK-----EKKIYESNKL--------------------IDELTFKLDLT 84
H T ++ +K+Y K +D +T +L L
Sbjct: 67 HDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRITAQLKLP 126
Query: 85 GQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYEL 144
+ + + G +I AC Y RL + E++ + + E+
Sbjct: 127 KHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEISDIARVEKKEI 186
Query: 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVK 204
GR + LNL P+ V + V + + G + +++R++ + +L A +
Sbjct: 187 GRSYRFIARNLNL-TPKKLFVKPTDYVNKFADELGLS-------EKVRRRAIEILEEAYR 238
Query: 205 WFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
LT+G+ P +V A L L G VA+ T VT R RYKEL+E L
Sbjct: 239 RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 293
>sp|Q9P6R0|TF3B_SCHPO Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=brf1 PE=1 SV=2
Length = 492
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 26/272 (9%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQLYGRDGPTGIYV----------- 49
M C +CGS T + SG+ C CGVV D +++ + TG V
Sbjct: 1 MGCPNCGSTTFESDTASGNTYCTQCGVVVEQDAIVSEVTFGEASTGAAVVQGSLVSNDQT 60
Query: 50 HVGTAG----TGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGL 105
H T G ++ +E I + I L L L + + F
Sbjct: 61 HARTFGGPYRNQGSVESRELTIANGRRRISALAIALKLNERHIEAAVRYFTLAINNNFIK 120
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G ++ +C Y+V R+ S + + + +L +V++LG ++ L LP +D
Sbjct: 121 GRRSQYVVASCLYIVCRISKTSHMLIDFSDILQINVFKLGSTFLKLCRVLRPNLPLLDPS 180
Query: 166 SMFERVIRNSRLQGFTNLDE--SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223
R F +L E R+ + L+ + ++ GRRP + A L+
Sbjct: 181 LYISR---------FASLLEFGPETHRVANDAIRLVARMNRDWMQIGRRPAGICGACLLI 231
Query: 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+N + V V +T +KR E
Sbjct: 232 AARMNNFRRSVREVVHVVKVADITIQKRLDEF 263
>sp|Q2NEL6|TF2B_METST Transcription initiation factor IIB OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tfb PE=3 SV=1
Length = 311
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 109/302 (36%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + G ++C +CG+V +AFD+ R G Y
Sbjct: 15 CPECGSTKLINDHERGEVVCGACGLVIDDNIVDMGPEWRAFDHEQRDKRTRVGAPITYT- 73
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQI-----KNMIDKITD---- 100
+ G + ++++ K IY + + + QR I+I +N+ +++
Sbjct: 74 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 133
Query: 101 -GEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
GL G ++ A Y R + E+A V
Sbjct: 134 SSRLGLPRSVRESASVVYRNAVENKLIRGRSIEGVVAASLYAACRRCKVPRTLDEIADVS 193
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + L+++LP + R L G ++ + +
Sbjct: 194 RVSKKEVGRTYRFLTRELHIRLPPTSPIDYVPRFASELNLSGV----------VQSKAIE 243
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++N A+ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 244 IINQAMDNGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 303
Query: 258 AL 259
L
Sbjct: 304 QL 305
>sp|P58109|TF2B2_PYRKO Transcription initiation factor IIB 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=tfb2 PE=3
SV=1
Length = 306
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 112/303 (36%), Gaps = 58/303 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + G ++C CG V +AF+ + R G P + +
Sbjct: 10 CPICGSTEFIYDPRRGEIVCAKCGYVIEENVVDEGPEWRAFEPGQREKRARTGAPMTLMI 69
Query: 50 HVGTAGTGSALNYKEKKIYES-------NKL--------------------------IDE 76
H G + +++++K I+ + NKL +D
Sbjct: 70 H--DKGLSTDIDWRDKDIHGNQITGMYRNKLRRLRMWQRRMRINDAAERNLAFALSELDR 127
Query: 77 LTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ +L L ++ K + G ++ A Y R++ + E+ASV
Sbjct: 128 MAAQLRLPRHLKEVAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDEIASV 187
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
E+GR + L L L S E V R G + R +K+
Sbjct: 188 SKVSKKEIGRSYRFMARGLGLNL---RPTSPIEYVDRFGDALGVSA-------RTKKRAK 237
Query: 197 LLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELL 256
+LN A+K +T+G+ P + A L L G VA+ H T VT R RYKEL+
Sbjct: 238 EILNEAIKRGITSGKGPTGLAAAALYIAALLEGEKKTQREVAEVAHVTEVTVRNRYKELV 297
Query: 257 EAL 259
E L
Sbjct: 298 EKL 300
>sp|O26971|TF2B_METTH Transcription initiation factor IIB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=tfb PE=3 SV=1
Length = 310
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 108/302 (35%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + ++C CG+V +AFD+ R G Y
Sbjct: 14 CPECGSDDLRGDYERAEIVCGKCGLVIDDNLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 72
Query: 51 VGTAGTGSALNYKEKKIYE-----------------------SNKLIDELTFKLD----- 82
+ G + ++++ K IY S L F L
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 132
Query: 83 ---LTGQRSI-QIKNMI-DKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
L RS+ + +M+ + + + G ++ A Y R + + E+A V
Sbjct: 133 SSRLGLPRSVREAASMVYRRAVENKLIRGRSIEGVVAASLYAACRKCNVPRTLDEIAEVS 192
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G ++ + +
Sbjct: 193 RVSKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EVQSKAIE 242
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA+ T VT R RYKEL E
Sbjct: 243 IIEMAMENGLTSGRGPTGVAAAALYIASVLLGEHKTQRDVAEVAGVTEVTIRNRYKELTE 302
Query: 258 AL 259
L
Sbjct: 303 QL 304
>sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=tfb PE=3 SV=1
Length = 326
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 104/304 (34%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G IC CG+V +AFD+ R G Y
Sbjct: 30 CPECGSPRLIRDYRRGEFICQDCGLVIEDTYIDAGPEWRAFDSEQRDKRSRVGAPVTYT- 88
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELT--FKLDLTGQRSIQIKNM-----------IDK 97
+ G + +++ K Y + F+L QR I+I N +D+
Sbjct: 89 IHDKGLSTIIDWSNKDYYGKAISVRNRAQLFRLR-KWQRRIRISNATERNLAFALSELDR 147
Query: 98 ITDGEFGL----------------------GDWFPILIGACSYVVMRLDDKSLPISEVAS 135
+ GL G ++ A Y R + E+A+
Sbjct: 148 MASA-LGLPKSVRETAAVIYRKAVEKNLIRGRSIEGVVAAALYAACRQAGVPRTLDEIAT 206
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
D E+GR + L LKL R L G ++K+
Sbjct: 207 YSRVDRKEIGRTYRFITRELGLKLMPTSPADYIPRFCAALGLSG----------EVQKKA 256
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ ++ A + LT+GR P V A L L G VA+ T VT R RYKEL
Sbjct: 257 IEIIKKAEERELTSGRGPTGVAAAALYVASILLGERRTQREVAEVAGVTEVTIRNRYKEL 316
Query: 256 LEAL 259
E L
Sbjct: 317 AEKL 320
>sp|A5UKA1|TF2B_METS3 Transcription initiation factor IIB OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=tfb PE=3 SV=1
Length = 310
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 103/302 (34%), Gaps = 56/302 (18%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L + ++C CG+V +AFD+ R G Y
Sbjct: 14 CPECGSTELIGDYERAEVVCAHCGLVIDENLVDMGPEWRAFDHEQRDKRTRVGAPITYT- 72
Query: 51 VGTAGTGSALNYKEKKIYESN-KLIDELTFKLDLTGQRSIQIKNMIDK------------ 97
+ G + ++++ K IY + + + QR I+I ++
Sbjct: 73 IHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATERNLAFALSELDRD 132
Query: 98 --------------------ITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
D + G ++ A Y R + + E+A V
Sbjct: 133 SSRLGLPRSVREAASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCNVPRTLDEIAEVS 192
Query: 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVL 197
E+GR + LN+KLP V R L G + + +
Sbjct: 193 RVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSG----------EAQSRAIE 242
Query: 198 LLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
++ A++ LT+GR P V A L L G +VA T VT R RYKEL E
Sbjct: 243 IIEKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVADIAGVTEVTIRNRYKELTE 302
Query: 258 AL 259
L
Sbjct: 303 QL 304
>sp|Q979Q3|TF2B1_THEVO Transcription initiation factor IIB 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=tfbA PE=3 SV=1
Length = 312
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 106/304 (34%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS L R+ G L+C CG V +AFD+ + R G P +
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDSYIDQGPEWRAFDSEQNESRARAGSPMTFTI 75
Query: 50 HVGTAGT----------GSAL---------------------NYKEKKIYESNKLIDELT 78
H T G ++ N E+ + ++ + ++ +
Sbjct: 76 HDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERMA 135
Query: 79 FKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138
F L + + K G ++ Y R+ + + E+ASV
Sbjct: 136 FNLSIPNDVRETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVTR 195
Query: 139 CDVYELGRMITRVVEFLNLK-LPEV--DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
E+GR + +L L +P D +S F + L SM R +
Sbjct: 196 VKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRF-----------CSKLKLSM--DTRNKA 242
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A LT+G+ P V A + + G VA+ T VT R RYKEL
Sbjct: 243 LEILRDAENVGLTSGKGPTGVAAAAIYIASLITGERRTQRAVAEVAGVTEVTIRNRYKEL 302
Query: 256 LEAL 259
E L
Sbjct: 303 TEKL 306
>sp|Q9P9I7|TF2B_METTL Transcription initiation factor IIB OS=Methanococcus
thermolithotrophicus GN=tfb PE=3 SV=1
Length = 339
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 112/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C +CG V +AFD+ R GP Y
Sbjct: 43 CPMCGSKNIIKDYERAEIVCETCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGPPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
D E+GR + LN++L + + R +L G + +
Sbjct: 220 GSRVDRKEIGRTYRFISRELNIRLTPTNPIDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L+G VA T VT R RYKEL
Sbjct: 270 ISILQKANEKGLTSGRGPTGVAAAAIYIASVLHGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>sp|Q66IW8|BRF2_XENLA Transcription factor IIIB 50 kDa subunit OS=Xenopus laevis GN=brf2
PE=2 SV=1
Length = 396
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
I++G C Y+ R + + + S++ + +V+ L + +P + + ++ +
Sbjct: 116 IIVGCCVYITCRQQQWPITMGTICSLIYAKKELFASLFMDIVQVLKVDVPSISLQNLVKS 175
Query: 171 VIRNSRLQGFTNLDE------SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R+ +L F + E LD + ++ V + A + +L TGR P+P++ A
Sbjct: 176 HCRSFKL--FKDSSEVPPQYAEKLDTVSERTVQTVELAYETWLVTGRHPIPMITAAAYIS 233
Query: 225 VELNGVS----------VKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV 274
+ S K+ +V T+ R KEL E L+K+A LPW K +++
Sbjct: 234 WQSFQPSRRLSCSLSRFCKLSDVDMPPPSTI-----RLKELQETLIKLAYHLPWLKILSL 288
Query: 275 --KNVLKN 280
KN++++
Sbjct: 289 NRKNIVQH 296
>sp|Q9HJM7|TF2B1_THEAC Transcription initiation factor IIB 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tfbA PE=3 SV=1
Length = 312
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 104/305 (34%), Gaps = 62/305 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS L R+ G L+C CG V +AFD+ + R G Y
Sbjct: 16 CPECGSTNLIRDYEHGELVCGECGAVIEDAYIDQGPEWRAFDSEQNESRARAGSPMTYT- 74
Query: 51 VGTAGTGSALNYKEKKIY-ESNKLIDELTFKLDLTGQRSIQIKNMID------------- 96
+ G + +++K K Y S + Q+ I++ N +
Sbjct: 75 IHDKGLSTDISWKNKDSYGRSIPTRNRAQLYRLRKWQKRIKVSNAAERNLSQALQELERM 134
Query: 97 -------------------KITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137
K G ++ Y R+ + + E+ASV
Sbjct: 135 ASNLSIPDDVKETAAVIYRKAVKQNMIRGRSIEGVVAGALYAACRITNVPRTLGEIASVT 194
Query: 138 NCDVYELGRMITRVVEFLNLK-LPEV--DIVSMFERVIRNSRLQGFTNLDESMLDRMRKQ 194
E+GR + +L L +P D +S F + L SM R +
Sbjct: 195 RVKKKEIGRTYRIMSRYLKLNIMPSKAEDYISRF-----------CSKLKLSM--DTRNK 241
Query: 195 GVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254
+ +L A LT+G+ P V A + + G VA+ T VT R RYKE
Sbjct: 242 ALEILRSAENAGLTSGKGPTGVAAAAIYIASLMTGERRTQRAVAEVAGVTEVTIRNRYKE 301
Query: 255 LLEAL 259
L E L
Sbjct: 302 LTEKL 306
>sp|A8AC96|TF2B_IGNH4 Transcription initiation factor IIB OS=Ignicoccus hospitalis
(strain KIN4/I / DSM 18386 / JCM 14125) GN=tfb PE=3 SV=1
Length = 316
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 113/304 (37%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS + + +G +C CG + +AF + + GR G P +
Sbjct: 11 CPVCGSTDIVFNEETGEYVCARCGTIVLDRYVDQGPEWRAFTPEERERRGRTGAPLSPTL 70
Query: 50 HVGTAGTGSALNYKEK----------KIYESNKL-----------------------IDE 76
H G + ++++++ K E +L +D
Sbjct: 71 H--DHGLSTVIDHRDRDALGKRLSPRKRQEVQRLRKWQLRARIQTGMDRNLTIAMNELDR 128
Query: 77 LTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASV 136
+ L+L Q + + K + G ++ A Y R+ + + E+A
Sbjct: 129 MANLLNLPKQIKEEAAVIYRKAVEKGLVRGRSIESVVAAVIYAACRIHHQPRTLDEIAKK 188
Query: 137 LNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGV 196
L + E+ R + + L LK+P D + R+ +L+G ++ E + M K
Sbjct: 189 LEVNRKEVARCYRLITKELKLKVPIADAMDHIPRIGEALKLRG--DIIEYAMKIMEK--- 243
Query: 197 LLLNCAVKWF-LTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+K +T G+ P + AV+ V G + +A T VT R RYKE+
Sbjct: 244 ------IKGHPITAGKDPAGIAAAVIYIAVMQKGERRTQKEIANVAGVTEVTVRNRYKEI 297
Query: 256 LEAL 259
++ L
Sbjct: 298 MKVL 301
>sp|Q6M176|TF2B_METMP Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain S2 / LL) GN=tfb PE=3 SV=1
Length = 339
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 111/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK++ ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKSIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGERGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>sp|A6VI28|TF2B_METM7 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=tfb PE=3 SV=1
Length = 339
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKNIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>sp|A9A8Q0|TF2B_METM6 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=tfb PE=3 SV=1
Length = 339
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK + ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKNIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSGRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>sp|A3CSQ6|TF2B_METMJ Transcription initiation factor IIB OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=tfb PE=3 SV=1
Length = 337
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CGS+ L + L+C +CG+V +AFD+ R G P +
Sbjct: 41 CPECGSRQLVHDYERAELVCQNCGLVLDEEFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 100
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 101 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 154
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 155 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 214
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 215 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLNLKG----------EVQ 264
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 265 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 324
Query: 253 KELLEAL 259
KEL E L
Sbjct: 325 KELAEKL 331
>sp|A7IAR4|TF2B_METB6 Transcription initiation factor IIB OS=Methanoregula boonei (strain
6A8) GN=tfb PE=3 SV=1
Length = 334
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C CG + L + L+C SCG+V +AFD+ R G P +
Sbjct: 38 CPECGGRQLVHDYERAELVCQSCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 97
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 98 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 151
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 212 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 261
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 262 SRAVEILRQAGERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 253 KELLEAL 259
KEL E L
Sbjct: 322 KELAEKL 328
>sp|Q9HRE6|TF2B2_HALSA Transcription initiation factor IIB 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tfbB PE=3
SV=1
Length = 325
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 65/312 (20%)
Query: 1 MPCTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGI 47
+ C CG + + E+ G +CV CG+V +AF++ + R G PT
Sbjct: 30 LTCPECGGQVIDDEE-HGESVCVDCGLVVEENGIDRGPEWRAFNSTEKDEKSRVGAPTTN 88
Query: 48 YVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLD----------LTGQRSIQIKNMIDK 97
+H G + + +++K Y N L K+ + +K + +
Sbjct: 89 MMH--DKGLSTNIGWQDKDAY-GNSLSSNQRQKMQRLRKWNERFRTRNSKERNLKQALGE 145
Query: 98 ITDGEFGLGDWFPILIGACSYVVMR--LDDKSLP------------------------IS 131
I LG P + + V+ R L + LP I
Sbjct: 146 IERMASALG--LPKEVRETASVIYRRALSEDLLPGRSIEGVATAALYASARQLSTPRSID 203
Query: 132 EVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRM 191
EVA+V D E R +V L+L++ D R ++LD + D +
Sbjct: 204 EVANVSRIDEMEFKRTYRYIVRELSLEVAPADPAQYVPRFA--------SDLD--LPDEV 253
Query: 192 RKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKR 251
++ L++ A +T+G+ P+ + A + L V V++ + VT R R
Sbjct: 254 ERRSRELISNAQADGVTSGKSPVGLAAAAIYASSLLTNHKVTQSEVSEVTDVSEVTIRNR 313
Query: 252 YKELLEALVKVA 263
Y+ELLEA A
Sbjct: 314 YQELLEATEAAA 325
>sp|A4G0F2|TF2B_METM5 Transcription initiation factor IIB OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=tfb PE=3 SV=1
Length = 339
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGSK++ ++ ++C CG V +AFD+ R G Y
Sbjct: 43 CPVCGSKSIIKDYERAEIVCEMCGCVLQQNLFDVGPEWRAFDHEQRVKRSRVGAPMTYT- 101
Query: 51 VGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTG-QRSIQIKNMIDKITDGEFGLGDW- 108
+ G + ++++ K Y + D+ L QR I++ + ++ + F L +
Sbjct: 102 IHDKGLSTVIDWRNKDSYGKDISADKRAQLYRLRKWQRRIRVSDASER--NLAFALSELD 159
Query: 109 -------FPILIGACSYVVMR-------LDDKSL-------------------PISEVAS 135
P + + V+ R + +S+ + E+A
Sbjct: 160 RIASKLGLPRNVRENAAVLYRGAVEKGLIRGRSIEGVAAAALYAACRRCKVPRTLDEIAE 219
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V D E+GR + LN++L + V R +L G + +
Sbjct: 220 VSRVDRKEIGRTYRFISRELNIRLAPTNPVDYVPRFASELKLPG----------EVESKA 269
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+ R P V A + L G VA T VT R RYKEL
Sbjct: 270 ISILQKAGEKGLTSSRGPTGVAAAAIYIASVLQGTRRTQREVADVAGVTEVTIRNRYKEL 329
Query: 256 LEAL 259
E L
Sbjct: 330 TEHL 333
>sp|A8MCX6|TF2B_CALMQ Transcription initiation factor IIB OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=tfb PE=3 SV=1
Length = 336
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 106 GDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIV 165
G +I AC ++ R+ + E++ E+ R + L ++LP D
Sbjct: 186 GRSVEAIIAACLHMACRMQGMPRSLDEISQYTRAPRKEIARCFRLIARELRIRLPLSDPR 245
Query: 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225
+++ +L G + K+ + +L A LT G+ P + A +
Sbjct: 246 QYVPKIVEQLKLPG----------DIAKEAIRVLEEAKDKGLTAGKDPAGLAAAAVYIAS 295
Query: 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEAL 259
L G + +A+ T VT R RYKEL + L
Sbjct: 296 LLKGEVRTQKEIAQAAQVTEVTVRNRYKELAKEL 329
>sp|B8GJQ9|TF2B_METPE Transcription initiation factor IIB OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tfb PE=3
SV=1
Length = 334
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 114/307 (37%), Gaps = 66/307 (21%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PTGIYV 49
C C S+ L + L+C +CG+V +AFD+ R G P +
Sbjct: 38 CPECKSRQLVHDYERAELVCQNCGLVIDDDFIDRGPEWRAFDHDQRMKRSRVGAPMTFTI 97
Query: 50 HVGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
H G + ++++ + Y S+K +L ++L QR I++ N ++ + F L
Sbjct: 98 H--DKGLSTMIDWRNRDSYGRAISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALS 151
Query: 107 DW--------FPILIGACSYVVMR-LDDKSL-------------------------PISE 132
+ P + + VV R DK+L + E
Sbjct: 152 ELDRMASALGLPRNVRETAAVVYRDAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDE 211
Query: 133 VASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR 192
+A V E+GR + L LKL + R L+G ++
Sbjct: 212 IAEVSRVSRKEIGRTYRFISRELGLKLLPTSPIDYVPRFCSGLTLKG----------EVQ 261
Query: 193 KQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRY 252
+ V +L A + LT+GR P V A + L G VA+ T VT R RY
Sbjct: 262 SRAVEILRQAAERELTSGRGPTGVAAAAIYISSILGGERRTQREVAEVAGVTEVTIRNRY 321
Query: 253 KELLEAL 259
KEL E L
Sbjct: 322 KELAEKL 328
>sp|Q3UAW9|BRF2_MOUSE Transcription factor IIIB 50 kDa subunit OS=Mus musculus GN=Brf2
PE=2 SV=1
Length = 420
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGTICTLLYADLDLFSGTYMQMVKLLGLDVPSLCLADLVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ + D+M + +LL+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKDKMLSRTLLLVELADETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGK--DVTVKNVLK 279
+ ++ + K + + R +ELL L+++A L W + + ++V+K
Sbjct: 236 SLRPSDRLTCSLAQFCKLANVDLPYPAASRLQELLAVLLQMAGQLAWLQVLKLNKRSVVK 295
Query: 280 NAPFVMNYMEMKSMEKRKEERDG 302
+ + + ++ + M R RDG
Sbjct: 296 H---IGDLLQHRHMLVRTAFRDG 315
>sp|Q4R318|BRF2_MACFA Transcription factor IIIB 50 kDa subunit OS=Macaca fascicularis
GN=BRF2 PE=2 SV=1
Length = 373
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 77/167 (46%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ + ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSIYMQIVKLLGLDMPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTLQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB OS=Caenorhabditis elegans
GN=ttb-1 PE=3 SV=2
Length = 306
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 100/274 (36%), Gaps = 47/274 (17%)
Query: 17 SGSLICVSCGVV------------QAFDNY-------------DAQLYGRDGPTGIYVHV 51
+G L+C +CG+V ++F N + L G D T I V
Sbjct: 21 AGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGAPENPLLSGGDLSTTIAVGF 80
Query: 52 GTAGTGSAL--------NYKEKKIYESNKLIDELTFKLDLTGQRSIQ--IKNMIDKITDG 101
G + + ++L N ++++ + LI E++ ++ L R+IQ + + +
Sbjct: 81 GGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIHLP--RNIQDSASRIFKDVLES 138
Query: 102 EFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE 161
+ G AC Y+ R D E+ +V E+GR +V L L +
Sbjct: 139 KALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSLETNLEQ 198
Query: 162 VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVL 221
+ R N S+ + ++ + CAV L GR P+ + A +
Sbjct: 199 ITSADFMSRFCGN----------LSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAAAAI 248
Query: 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ + + + +T R+ YK L
Sbjct: 249 YMASQASAEKRSAKEIGDVAGAAEITVRQTYKLL 282
>sp|Q58192|TF2B_METJA Transcription initiation factor IIB OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=tfb PE=3 SV=1
Length = 673
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171
++ A Y R + E+A D E+GR + LN+KL + + R
Sbjct: 530 VVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELNIKLTPTNPIDYVPRF 589
Query: 172 IRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVS 231
L G + + + +L A + LT+GR P V A + L G
Sbjct: 590 ASELGLPG----------EVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCR 639
Query: 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259
VA+ T VT R RYKEL E L
Sbjct: 640 RTQREVAEVAGVTEVTIRNRYKELTEHL 667
>sp|Q29S07|BRF2_BOVIN Transcription factor IIIB 50 kDa subunit OS=Bos taurus GN=BRF2 PE=2
SV=1
Length = 421
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 22/207 (10%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L G C + R + L + + ++L D+ ++V+ L L +P + +V + +
Sbjct: 116 VLAGCCVLITCRQRNWPLTMGTICTLLYADLDVFSGTYMQIVKLLGLDVPSLCLVDLVKT 175
Query: 171 VIRNSRL--------QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222
+ +L + E ML R + L+ A + +L TGR P+PV+ A
Sbjct: 176 YCSSFKLFEASPSVPAKYVEDKEKMLSRTLQ----LVELADETWLVTGRHPLPVITAATF 231
Query: 223 FVVE----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPWGKDVTV--K 275
+ + ++ + K + + R +ELL L+++A+ L W + + + +
Sbjct: 232 LAWQSLRPSDRLTCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAWLQVLKLDKR 291
Query: 276 NVLKNAPFVMNYMEMKSMEKRKEERDG 302
+V+K+ + + ++ + M RK RDG
Sbjct: 292 SVVKH---IGDLLQHRHMLVRKAFRDG 315
>sp|A0B5T8|TF2B_METTP Transcription initiation factor IIB OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=tfb PE=3 SV=1
Length = 337
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 110/304 (36%), Gaps = 60/304 (19%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L R+ L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRALVRDYERAELVCSECGLVIDENFIDQGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ D
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKTISSKNRAQL-YRLR-KWQRRIRVSNATERNLAFALSELD 157
Query: 108 WFPILIG-------ACSYVVMRLDDKSL-------------------------PISEVAS 135
+G + + R +K+L + E+A
Sbjct: 158 RMASALGLSRNVRETAAVIYRRAVEKNLIRGRSIEGVAAAALYAACRQCNVPRTLDEIAE 217
Query: 136 VLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQG 195
V E+GR V L+LKL + R L+G ++ +G
Sbjct: 218 VSRVSRKEIGRTYRFVSRELSLKLMPTSPIDYIPRFCSGLNLKGD----------VQAKG 267
Query: 196 VLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
+ +L A + LT+GR P V A + L VA T VT R RYKEL
Sbjct: 268 IEILRQAAEKELTSGRGPTGVAAAAIYIASILCNDRRTQREVADVAGVTEVTIRNRYKEL 327
Query: 256 LEAL 259
E L
Sbjct: 328 AEEL 331
>sp|Q8CFK2|TF3B_MOUSE Transcription factor IIIB 90 kDa subunit OS=Mus musculus GN=Brf1
PE=1 SV=1
Length = 676
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 94/276 (34%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------QAFDNYDA------QLYGRDG--- 43
C CG + + G +C CG V Q +N Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFVENSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGSQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>sp|Q4V8D6|BRF2_RAT Transcription factor IIIB 50 kDa subunit OS=Rattus norvegicus
GN=Brf2 PE=2 SV=1
Length = 416
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+++G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VVVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLADLVKS 175
Query: 171 VIRNSRL-QGFTNLDESML---DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ + D+M + +LL+ A + +L TGR P+P++ A +
Sbjct: 176 YCSSFKLFQASPSMPAKYVEDKDKMLSRTLLLVELANETWLVTGRHPLPIITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ ++ + K + + R +ELL L+++A L W
Sbjct: 236 SLRPSDRLTCSLARFCKLANVDLPYPAASRLQELLAVLLQMASQLAW 282
>sp|P29056|TF3B_YEAST Transcription factor IIIB 70 kDa subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BRF1 PE=1
SV=1
Length = 596
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 114/287 (39%), Gaps = 57/287 (19%)
Query: 1 MP-CTSCGSKTLTRE--DISGSLICVSCGVVQAFDN-------YDAQLYGRDGPTGIYVH 50
MP C +C R+ + + L+C +CGVV DN + G G ++
Sbjct: 1 MPVCKNCHGTEFERDLSNANNDLVCKACGVVSE-DNPIVSEVTFGETSAGAAVVQGSFIG 59
Query: 51 VGTA----GTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
G + G SAL +E + + + + +++ L ++ + ITD F
Sbjct: 60 AGQSHAAFGGSSALESREATLNNARRKLRAVSYAL-----------HIPEYITDAAF--- 105
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I +C YV R + + + +S L VY +G ++V
Sbjct: 106 QWYKLALANNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSIGATFLKMV 165
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFT---NLDESMLDRMRKQGVLLLNCAVKWFLT 208
+ L++ +LP D S+F +Q F +L + + ++ K V L K ++
Sbjct: 166 KKLHITELPLAD-PSLF--------IQHFAEKLDLADKKI-KVVKDAVKLAQRMSKDWMF 215
Query: 209 TGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A ++ +N + + H T ++R E
Sbjct: 216 EGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNEF 262
>sp|P46070|TF3B_KLULA Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
Length = 556
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/286 (20%), Positives = 110/286 (38%), Gaps = 57/286 (19%)
Query: 3 CTSCGSKTLTREDISGS---LICVSCGVVQAFDNYDAQLYGRDGPTGIYVHVG------- 52
C +CGS R DIS + LIC CG+V ++ +++ + G V G
Sbjct: 12 CKNCGSTDFVR-DISNTTNELICKVCGLVTEENSIVSEVTFGEASNGAAVIQGAFVSANQ 70
Query: 53 ------TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG 106
+ +AL +E + + + + +++ L N+ + +TD F
Sbjct: 71 AHPTFMSHSGQNALMSRETTLNNARRKLKAVSYAL-----------NIPEYVTDAAF--- 116
Query: 107 DWFPI--------------LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVV 152
W+ + +I AC Y+ R + + + +S L VY +G ++
Sbjct: 117 QWYRLALSNNFVQGRKSQNVIAACLYIACRKERTHHMLIDFSSRLQVSVYSIGATFLKLA 176
Query: 153 EFLNL-KLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMR--KQGVLLLNCAVKWFLTT 209
+ L + KLP D S+F +Q F E +++ + V L + ++
Sbjct: 177 KKLQIVKLPLAD-PSLF--------IQHFAEKLELGDKKIKVIRDAVKLAQTMSRDWMYE 227
Query: 210 GRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
GRRP + A L+ +N + + H T ++R E
Sbjct: 228 GRRPAGIAGACLLLACRMNNLRRTHSEIVAISHVAEETLQQRLNEF 273
>sp|Q9HAW0|BRF2_HUMAN Transcription factor IIIB 50 kDa subunit OS=Homo sapiens GN=BRF2
PE=1 SV=1
Length = 419
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
+L+G C + R + L + + ++L D+ ++V+ L L +P + + + +
Sbjct: 116 VLVGCCVLITCRQHNWPLTMGAICTLLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKT 175
Query: 171 VIRNSRL-QGFTNLDESMLD---RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVE 226
+ +L Q ++ ++ +M + + L+ A + +L TGR P+PV+ A +
Sbjct: 176 YCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVELANETWLVTGRHPLPVITAATFLAWQ 235
Query: 227 ----LNGVSVKIENVAKEVHCTV-VTCRKRYKELLEALVKVAQALPW 268
+ +S + K + + R +ELL L+++A+ L W
Sbjct: 236 SLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQLAW 282
>sp|A6UW60|TF2B_META3 Transcription initiation factor IIB OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=tfb PE=3 SV=1
Length = 334
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 130 ISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLD 189
+ E+A + D E+GR + L ++L + R +L G
Sbjct: 209 LDEIAEMSRVDRKEIGRTYRFISRELKIRLAPTSPIDYVPRFASELKLPG---------- 258
Query: 190 RMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCR 249
+ + + +L A LT+GR P V A + L+G VA T VT R
Sbjct: 259 EVESKAISILQKAGDKGLTSGRGPTGVAAAAIYIASVLHGTRKTQREVADVAGVTEVTIR 318
Query: 250 KRYKELLEAL 259
RYKEL E L
Sbjct: 319 NRYKELTEHL 328
>sp|A4QNR3|BRF2_XENTR Transcription factor IIIB 50 kDa subunit OS=Xenopus tropicalis
GN=brf2 PE=2 SV=1
Length = 519
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFER 170
I++G C Y+ R + ++ + S++ + +V+ L L +P V + ++
Sbjct: 116 IIVGCCVYITCRQHQWPITMATICSLVYAKKELFASIFLSIVQVLKLDVPSVSLQNLVMS 175
Query: 171 VIRNSRLQGFTNLDE------SMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFV 224
R+ +L F + E LD + ++ V + A + +L TGR P+P++ A
Sbjct: 176 HCRSFKL--FKDSCEVPSHYAEKLDTVSERTVQTVELAYETWLVTGRHPIPIITAAAY-- 231
Query: 225 VELNGVSVKIENVAKEVHCTVVTCRK------------RYKELLEALVKVAQALPWGK 270
+S + A+ + C++ K R +EL L+K++ LPW K
Sbjct: 232 -----ISWQSLLPARRLSCSLSRFCKLSDVDLPPPSAIRLRELQGTLIKLSVYLPWLK 284
>sp|Q92994|TF3B_HUMAN Transcription factor IIIB 90 kDa subunit OS=Homo sapiens GN=BRF1
PE=1 SV=1
Length = 677
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 37/276 (13%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV----------------QAFDNYDAQLYGRDG--- 43
C CG + + G +C +CG V + Q DG
Sbjct: 6 CRGCGGTDIELDAARGDAVCTACGSVLEDNIIVSEVQFVESSGGGSSAVGQFVSLDGAGK 65
Query: 44 -PT---GIYVHVGTAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
PT G +V++G L + I+ L +L L N
Sbjct: 66 TPTLGGGFHVNLGKESRAQTLQNGRRHIHH-------LGNQLQLNQHCLDTAFNFFKMAV 118
Query: 100 DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159
G +I AC Y+V R + + +++ +L +VY LG+ + L +
Sbjct: 119 SRHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINA 178
Query: 160 PEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVA 219
P +D R G N + SM + LL + ++ TGRRP + A
Sbjct: 179 PAIDPCLYIPRFAHLLEF-GEKNHEVSM------TALRLLQRMKRDWMHTGRRPSGLCGA 231
Query: 220 VLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255
L+ ++ ++ V V T RKR E
Sbjct: 232 ALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEF 267
>sp|Q8TT29|TF2B_METAC Transcription initiation factor IIB OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=tfb
PE=3 SV=1
Length = 337
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>sp|P0CW14|TF2B_METMZ Transcription initiation factor IIB OS=Methanosarcina mazei GN=tfb
PE=3 SV=1
Length = 337
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>sp|P0CW15|TF2B_METMA Transcription initiation factor IIB OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=tfb PE=3 SV=1
Length = 337
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 111/306 (36%), Gaps = 64/306 (20%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDGPTGIYVH 50
C CGS+ L + L+C CG+V +AFD+ R G Y
Sbjct: 41 CPECGSRNLVHDYERAELVCGDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYT- 99
Query: 51 VGTAGTGSALNYKEKKIYE---SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGD 107
+ G + ++++ + Y S+K +L ++L QR I++ N ++ + F L +
Sbjct: 100 IHDKGLSTMIDWRNRDSYGKSISSKNRAQL-YRLR-KWQRRIRVSNATER--NLAFALSE 155
Query: 108 W--------FPILIGACSYVVMRLD-DKSL-------------------------PISEV 133
P + + VV R DK+L + E+
Sbjct: 156 LDRMASALGLPRTVRETAAVVYRKAVDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEI 215
Query: 134 ASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRK 193
V E+GR + L LKL + R L+G ++
Sbjct: 216 EEVSRVSRKEIGRTYRFISRELALKLMPTSPIDYVPRFCSGLNLKG----------EVQS 265
Query: 194 QGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253
+ V +L A + LT+GR P V A + L G VA T VT R RYK
Sbjct: 266 KSVEILRQASEKELTSGRGPTGVAAAAIYIASILCGERRTQREVADVAGVTEVTIRNRYK 325
Query: 254 ELLEAL 259
EL E L
Sbjct: 326 ELAEEL 331
>sp|Q9SS44|TF2B2_ARATH Transcription initiation factor IIB-2 OS=Arabidopsis thaliana
GN=TFIIB2 PE=2 SV=1
Length = 312
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 72 KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPIS 131
K I + +L L + + ++ D + G L+ AC Y+ R +DK +
Sbjct: 110 KTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVK 169
Query: 132 EVASVLN-CDVYELGRMITRVVEFLNL---KLPEVDIVSMFERVIRNSRLQGFTNLD-ES 186
E+ SV N E+GR +V+ L L +L E+ + + + R G TN ++
Sbjct: 170 EICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKA 229
Query: 187 MLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVV 246
+ ++K + R P+ + AV+ + +L+ + +++
Sbjct: 230 AQESVQKSEEFDIR----------RSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEG 279
Query: 247 TCRKRYKELLEALVKVAQALPWGKDVTVKNV 277
T R YK+L L K+ A + K+ +KN+
Sbjct: 280 TIRNSYKDLYPHLSKIIPAW-YAKEEDLKNL 309
>sp|Q8ZWS3|TF2B_PYRAE Transcription initiation factor IIB OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=tfb PE=3 SV=1
Length = 333
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D + R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPILYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>sp|A4WMA6|TF2B_PYRAR Transcription initiation factor IIB OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=tfb PE=3 SV=1
Length = 333
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKAAIDILQRAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>sp|A1RV37|TF2B_PYRIL Transcription initiation factor IIB OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=tfb PE=3 SV=1
Length = 333
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D V R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPVLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + L+G + ++ A T VT
Sbjct: 257 -EVVKTAIEILQKAKKAGITAGKDPAGLAAAAVYIASLLHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL + L
Sbjct: 316 RNRYKELAKTL 326
>sp|B1YCX0|TF2B_PYRNV Transcription initiation factor IIB OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=tfb PE=3 SV=1
Length = 333
Score = 39.7 bits (91), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 129 PISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESML 188
P+ E+ E+ R ++ LN+K+P D R+ +L G
Sbjct: 206 PLDELVRYTKASRREVARCYRLLLRELNVKVPISDPTLYISRIAEQLKLSG--------- 256
Query: 189 DRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTC 248
+ K + +L A K +T G+ P + A + ++G + ++ A T VT
Sbjct: 257 -EVVKTAIDILQKAKKAGITAGKDPAGLAAAAVYIASLMHGDNRTQKDFAVAAGVTEVTV 315
Query: 249 RKRYKELLEAL 259
R RYKEL +AL
Sbjct: 316 RNRYKELAKAL 326
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80
PE=1 SV=2
Length = 1638
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 396 YELHAYRDWWCGKSELSKKVLLKKILEKDVGLDVMPPSFV 435
Y L AYR +W K S+ LL+ +LE + LD MPP+ V
Sbjct: 940 YPLLAYRRFWWKKQPDSRYQLLEPMLENKLALDYMPPNSV 979
>sp|Q9YGA5|TFB2_HALVD Transcription initiation factor IIB 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=tfb2 PE=1 SV=1
Length = 332
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 3 CTSCGSKTLTREDISGSLICVSCGVV------------QAFDNYDAQLYGRDG-PT---- 45
C C +T E+ G IC CG+V +AFD+ + R G PT
Sbjct: 37 CPECSGHLVTDEE-HGETICEDCGLVVEDTVVDRGPEWRAFDSAERDSKSRVGAPTTKMM 95
Query: 46 ---GIYVHVG---TAGTGSALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKIT 99
G+ ++G G +L+ ++++ + + +E F+ + +R++ K + +I
Sbjct: 96 HDKGLSTNIGWQNKDAYGKSLSPRQREQMQRLRTWNE-RFRTRDSKERNL--KQALGEID 152
Query: 100 DGEFGLGDWFPILIGACSYVVMR--LDDKSLPISEVASVLNCDVYELGRM--ITRVVEFL 155
LG P + + V+ R L+D LP + V +Y RM R ++ L
Sbjct: 153 RMASALG--LPENVRETASVIYRRALNDDLLPGRSIEGVATSALYASARMAGTPRSLDEL 210
Query: 156 N--LKLPEVDIVSMFERVIRNSRLQGFTNLDES----------MLDRMRKQGVLLLNCAV 203
++ ++++ + ++R +L+ E + D +Q LL A
Sbjct: 211 EKVSRVDKMELTRTYRYIVRELKLEIKPADPEQYVPRFASELGLSDEAERQARQLLRDAK 270
Query: 204 KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257
+ + +G+ P+ + A + L V V+ + VT R RYKELLE
Sbjct: 271 ETGIHSGKSPVGLAAAAVYAAALLTNEKVTQSEVSTVADISEVTIRNRYKELLE 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,473,771
Number of Sequences: 539616
Number of extensions: 8357734
Number of successful extensions: 19863
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 19722
Number of HSP's gapped (non-prelim): 123
length of query: 530
length of database: 191,569,459
effective HSP length: 122
effective length of query: 408
effective length of database: 125,736,307
effective search space: 51300413256
effective search space used: 51300413256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)