Query 047665
Match_columns 530
No_of_seqs 189 out of 1126
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 23:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 100.0 1.5E-52 5.1E-57 435.8 11.9 268 1-279 22-341 (345)
2 3k7a_M Transcription initiatio 100.0 4.8E-49 1.6E-53 409.5 8.2 268 1-279 22-341 (345)
3 1ais_B TFB TFIIB, protein (tra 100.0 3E-37 1E-41 296.2 24.0 190 61-260 3-194 (200)
4 1c9b_A General transcription f 100.0 4.9E-35 1.7E-39 282.4 23.9 205 63-279 1-206 (207)
5 1zp2_A RNA polymerase II holoe 99.8 2.7E-20 9.3E-25 182.9 18.8 184 67-261 28-220 (235)
6 2i53_A Cyclin K; cell cycle, t 99.8 8.9E-18 3.1E-22 166.6 20.2 187 68-260 42-250 (258)
7 2ivx_A Cyclin-T2; transcriptio 99.8 5.3E-17 1.8E-21 161.2 23.7 184 68-261 32-240 (257)
8 2b9r_A Human cyclin B1; cell c 99.7 5E-17 1.7E-21 163.0 20.3 185 69-263 40-227 (269)
9 2w96_A G1/S-specific cyclin-D1 99.7 2.2E-16 7.4E-21 158.3 22.3 190 69-264 59-260 (271)
10 3rgf_B Cyclin-C; protein kinas 99.7 3.3E-16 1.1E-20 158.4 22.9 187 64-262 39-243 (285)
11 2cch_B Cyclin A2, cyclin-A; co 99.7 2.5E-16 8.5E-21 156.9 20.8 184 69-261 41-228 (260)
12 2pk2_A Cyclin-T1, protein TAT; 99.7 1.1E-16 3.8E-21 167.0 12.4 182 68-259 39-245 (358)
13 2f2c_A Cyclin homolog, V-cycli 99.7 1.2E-14 4.1E-19 144.3 23.2 188 69-262 54-249 (254)
14 1g3n_C V-cyclin; cyclin-depend 99.6 7E-15 2.4E-19 146.2 20.5 188 69-262 53-249 (257)
15 1jkw_A Cyclin H; cell cycle, c 99.6 4.2E-14 1.4E-18 145.5 21.9 189 64-258 53-258 (323)
16 1w98_B Cyclin E, G1/S-specific 99.6 9.7E-14 3.3E-18 140.2 19.9 187 69-262 52-243 (283)
17 3g33_B CCND3 protein; Ser/Thr 99.5 3.7E-13 1.3E-17 137.5 21.9 191 69-265 73-271 (306)
18 1ais_B TFB TFIIB, protein (tra 99.3 1E-11 3.5E-16 118.5 11.8 92 70-161 108-199 (200)
19 1c9b_A General transcription f 99.1 4.8E-10 1.6E-14 107.5 11.3 92 70-161 102-193 (207)
20 1f5q_B Gamma herpesvirus cycli 98.9 8.2E-08 2.8E-12 95.5 21.7 187 69-263 51-244 (252)
21 4bbr_M Transcription initiatio 98.6 3.8E-09 1.3E-13 109.6 0.0 98 70-171 235-332 (345)
22 1dl6_A Transcription factor II 98.6 3.7E-08 1.3E-12 76.7 3.8 36 1-36 12-47 (58)
23 3k7a_M Transcription initiatio 98.4 3.1E-08 1E-12 102.7 0.0 86 71-156 236-321 (345)
24 3k1f_M Transcription initiatio 98.3 2.2E-07 7.4E-12 86.7 2.6 32 1-32 22-55 (197)
25 1pft_A TFIIB, PFTFIIBN; N-term 98.2 1.2E-06 4.1E-11 65.8 5.1 35 2-36 7-41 (50)
26 3h4c_A Transcription factor TF 97.5 0.0017 5.7E-08 62.1 14.7 106 70-177 15-129 (260)
27 1zp2_A RNA polymerase II holoe 96.9 0.0057 2E-07 59.3 11.1 83 165-257 32-123 (235)
28 3m03_A ORC6, origin recognitio 96.6 0.0077 2.6E-07 51.1 8.1 80 74-155 6-91 (95)
29 2cch_B Cyclin A2, cyclin-A; co 96.5 0.0079 2.7E-07 59.3 9.4 88 70-157 139-228 (260)
30 2b9r_A Human cyclin B1; cell c 96.5 0.0055 1.9E-07 60.8 7.9 87 70-156 138-224 (269)
31 2i53_A Cyclin K; cell cycle, t 96.2 0.013 4.4E-07 57.3 8.6 88 70-157 151-251 (258)
32 3rgf_B Cyclin-C; protein kinas 96.1 0.012 4.2E-07 58.8 8.2 104 71-177 158-261 (285)
33 2w96_A G1/S-specific cyclin-D1 96.1 0.016 5.3E-07 57.5 8.7 91 70-160 157-260 (271)
34 2ivx_A Cyclin-T2; transcriptio 96.1 0.04 1.4E-06 53.9 11.6 67 165-241 35-101 (257)
35 1jkw_A Cyclin H; cell cycle, c 95.9 0.057 2E-06 55.1 12.4 93 166-268 62-156 (323)
36 2f2c_A Cyclin homolog, V-cycli 95.4 0.054 1.9E-06 53.0 9.6 85 72-156 154-247 (254)
37 2pk2_A Cyclin-T1, protein TAT; 95.0 0.042 1.4E-06 57.0 7.8 67 165-241 42-108 (358)
38 1g3n_C V-cyclin; cyclin-depend 95.0 0.054 1.9E-06 53.1 8.1 87 70-156 151-247 (257)
39 4ell_A Retinoblastoma-associat 95.0 0.048 1.6E-06 57.6 8.0 75 65-139 276-354 (411)
40 1vq8_Z 50S ribosomal protein L 94.3 0.028 9.7E-07 46.5 3.4 34 2-36 29-62 (83)
41 1qxf_A GR2, 30S ribosomal prot 94.3 0.02 6.7E-07 45.2 2.3 30 2-31 9-38 (66)
42 2js4_A UPF0434 protein BB2007; 94.2 0.036 1.2E-06 44.4 3.7 29 1-30 9-37 (70)
43 2pk7_A Uncharacterized protein 94.2 0.033 1.1E-06 44.5 3.4 29 1-30 9-37 (69)
44 2hf1_A Tetraacyldisaccharide-1 94.2 0.032 1.1E-06 44.5 3.4 29 1-30 9-37 (68)
45 3j20_W 30S ribosomal protein S 94.1 0.019 6.5E-07 45.0 1.8 30 2-31 17-46 (63)
46 2jr6_A UPF0434 protein NMA0874 94.0 0.035 1.2E-06 44.3 3.3 29 1-30 9-37 (68)
47 2jny_A Uncharacterized BCR; st 93.8 0.042 1.4E-06 43.7 3.4 28 2-30 12-39 (67)
48 4elj_A Retinoblastoma-associat 93.7 0.12 4.2E-06 57.4 8.2 73 65-137 521-597 (656)
49 2qdj_A Retinoblastoma-associat 93.7 0.2 6.8E-06 50.9 9.0 73 73-146 5-82 (304)
50 2r7g_A PP110, retinoblastoma-a 93.6 0.15 5.1E-06 52.7 8.1 73 66-138 213-289 (347)
51 2xzm_6 RPS27E; ribosome, trans 93.2 0.034 1.2E-06 45.6 2.0 30 2-31 34-63 (81)
52 3g33_B CCND3 protein; Ser/Thr 93.1 0.31 1.1E-05 49.2 9.3 87 72-158 173-268 (306)
53 3u5c_b RP61, YS20, 40S ribosom 92.9 0.029 1E-06 46.1 1.2 30 2-31 36-65 (82)
54 3j20_Y 30S ribosomal protein S 92.1 0.11 3.9E-06 38.8 3.4 27 2-29 21-47 (50)
55 3iz6_X 40S ribosomal protein S 92.0 0.036 1.2E-06 45.9 0.6 31 2-32 38-68 (86)
56 1w98_B Cyclin E, G1/S-specific 90.7 1.1 3.8E-05 44.4 10.2 82 166-257 55-140 (283)
57 4elj_A Retinoblastoma-associat 88.6 1.8 6.1E-05 48.2 10.5 77 73-153 7-88 (656)
58 2lnb_A Z-DNA-binding protein 1 87.8 0.38 1.3E-05 39.2 3.4 45 116-160 23-67 (80)
59 3iz5_m 60S ribosomal protein L 87.4 1.4 4.8E-05 37.0 6.7 35 2-37 38-72 (92)
60 3izc_m 60S ribosomal protein R 86.7 1.5 5.2E-05 36.8 6.5 35 2-37 38-72 (92)
61 3m03_A ORC6, origin recognitio 86.5 2.4 8.3E-05 35.8 7.8 45 212-257 45-89 (95)
62 4a17_Y RPL37A, 60S ribosomal p 86.4 1.4 4.7E-05 37.7 6.2 35 2-37 38-72 (103)
63 1tc3_C Protein (TC3 transposas 84.5 0.85 2.9E-05 31.6 3.6 25 231-255 21-45 (51)
64 2kpi_A Uncharacterized protein 84.2 0.78 2.7E-05 35.0 3.3 26 2-30 12-39 (56)
65 2r7g_A PP110, retinoblastoma-a 84.1 11 0.00039 38.7 13.1 125 108-240 103-287 (347)
66 3j21_i 50S ribosomal protein L 83.9 0.98 3.4E-05 37.2 4.0 35 2-37 37-71 (83)
67 3o9x_A Uncharacterized HTH-typ 83.9 0.45 1.5E-05 41.4 2.2 24 125-148 82-105 (133)
68 2k4x_A 30S ribosomal protein S 83.6 0.54 1.8E-05 35.8 2.2 27 2-29 20-46 (55)
69 2jt1_A PEFI protein; solution 82.3 1 3.6E-05 36.4 3.6 29 229-257 22-50 (77)
70 2akl_A PHNA-like protein PA012 82.3 0.74 2.5E-05 41.0 2.9 27 2-30 29-55 (138)
71 1qyp_A RNA polymerase II; tran 81.9 0.98 3.4E-05 34.2 3.1 30 2-31 17-55 (57)
72 1ffk_W Ribosomal protein L37AE 81.9 0.92 3.1E-05 36.6 3.0 35 2-37 29-63 (73)
73 3ga8_A HTH-type transcriptiona 81.6 0.66 2.3E-05 37.3 2.2 30 1-30 3-47 (78)
74 3cc2_Z 50S ribosomal protein L 81.6 0.92 3.1E-05 39.6 3.1 35 2-37 62-96 (116)
75 1nui_A DNA primase/helicase; z 81.2 0.86 2.9E-05 44.3 3.3 26 2-28 16-42 (255)
76 2jpc_A SSRB; DNA binding prote 81.0 1.6 5.6E-05 32.3 4.1 30 231-260 13-42 (61)
77 2o8x_A Probable RNA polymerase 80.1 2 6.8E-05 32.5 4.4 35 230-264 30-64 (70)
78 3hug_A RNA polymerase sigma fa 80.0 1.8 6.3E-05 35.1 4.4 36 230-265 52-87 (92)
79 1l9z_H Sigma factor SIGA; heli 79.2 54 0.0019 34.6 16.5 31 230-260 394-424 (438)
80 2k5r_A Uncharacterized protein 78.5 0.95 3.3E-05 38.4 2.2 14 17-30 51-64 (97)
81 3jyw_9 60S ribosomal protein L 78.0 1.2 4.1E-05 35.8 2.5 35 2-37 28-62 (72)
82 1t6s_A Conserved hypothetical 76.5 3.2 0.00011 38.2 5.4 43 110-156 9-53 (162)
83 4ich_A Transcriptional regulat 76.2 2 6.8E-05 42.2 4.2 48 216-264 125-173 (311)
84 1fse_A GERE; helix-turn-helix 76.0 4.3 0.00015 30.8 5.3 30 231-260 26-55 (74)
85 1k81_A EIF-2-beta, probable tr 74.9 1.2 4.3E-05 30.8 1.6 30 1-30 1-32 (36)
86 2p7v_B Sigma-70, RNA polymeras 74.3 2.6 8.8E-05 32.2 3.5 33 230-262 24-56 (68)
87 1je8_A Nitrate/nitrite respons 74.1 4 0.00014 32.6 4.8 31 230-260 35-65 (82)
88 1twf_L ABC10-alpha, DNA-direct 73.6 0.86 2.9E-05 36.4 0.6 27 2-30 30-57 (70)
89 1ku3_A Sigma factor SIGA; heli 72.8 4.9 0.00017 31.0 4.9 31 230-260 29-59 (73)
90 3lwf_A LIN1550 protein, putati 72.8 5.3 0.00018 36.4 5.8 47 108-154 25-71 (159)
91 2w7n_A TRFB transcriptional re 72.4 11 0.00037 32.0 7.3 69 223-295 26-96 (101)
92 2x48_A CAG38821; archeal virus 72.4 2.2 7.6E-05 31.0 2.6 23 231-253 31-53 (55)
93 3i4p_A Transcriptional regulat 72.3 4.4 0.00015 36.4 5.2 30 229-258 15-44 (162)
94 3c57_A Two component transcrip 72.2 3.9 0.00013 33.6 4.4 32 231-262 42-73 (95)
95 1rp3_A RNA polymerase sigma fa 71.6 60 0.0021 29.6 16.4 35 230-264 202-236 (239)
96 1jko_C HIN recombinase, DNA-in 71.5 1 3.4E-05 31.7 0.5 23 232-254 22-44 (52)
97 1qbj_A Protein (double-strande 71.3 4.4 0.00015 32.9 4.4 29 229-257 25-53 (81)
98 1x3u_A Transcriptional regulat 71.0 5.5 0.00019 30.8 4.8 31 230-260 30-60 (79)
99 1gh9_A 8.3 kDa protein (gene M 70.7 2.1 7.3E-05 34.2 2.3 28 2-32 6-33 (71)
100 1tty_A Sigma-A, RNA polymerase 70.7 4.8 0.00017 32.3 4.5 34 230-263 37-70 (87)
101 1qgp_A Protein (double strande 70.3 3.8 0.00013 32.8 3.7 28 230-257 30-57 (77)
102 2cg4_A Regulatory protein ASNC 69.7 6.3 0.00022 34.7 5.5 30 229-258 20-49 (152)
103 2dbb_A Putative HTH-type trans 69.3 6.6 0.00023 34.5 5.5 30 229-258 21-50 (151)
104 2cyy_A Putative HTH-type trans 69.1 6.6 0.00023 34.6 5.5 29 230-258 20-48 (151)
105 2e1c_A Putative HTH-type trans 68.0 6.5 0.00022 35.9 5.3 29 230-258 40-68 (171)
106 3j21_g 50S ribosomal protein L 67.9 1.1 3.7E-05 33.7 -0.0 23 1-28 15-37 (51)
107 2cfx_A HTH-type transcriptiona 67.8 6.8 0.00023 34.3 5.3 30 229-258 17-46 (144)
108 1i1g_A Transcriptional regulat 67.5 7.6 0.00026 33.5 5.5 30 229-258 16-45 (141)
109 2rnj_A Response regulator prot 67.4 3.9 0.00013 33.1 3.3 30 231-260 44-73 (91)
110 3mzy_A RNA polymerase sigma-H 67.1 5.3 0.00018 34.5 4.4 35 230-264 123-157 (164)
111 3ulq_B Transcriptional regulat 67.1 5.2 0.00018 32.8 4.0 30 231-260 44-73 (90)
112 2y75_A HTH-type transcriptiona 66.6 9.4 0.00032 32.7 5.8 44 110-153 9-52 (129)
113 1wii_A Hypothetical UPF0222 pr 66.5 3.8 0.00013 33.9 3.0 30 2-31 25-59 (85)
114 1p4w_A RCSB; solution structur 66.3 6.1 0.00021 33.0 4.4 30 231-260 49-78 (99)
115 2pmi_B PHO85 cyclin PHO80, ami 66.2 87 0.003 31.4 13.5 104 70-174 77-184 (293)
116 2p5v_A Transcriptional regulat 66.2 7.5 0.00026 34.7 5.3 30 229-258 22-51 (162)
117 2htj_A P fimbrial regulatory p 65.9 10 0.00034 29.9 5.5 28 231-258 14-41 (81)
118 2pn6_A ST1022, 150AA long hypo 65.5 7.8 0.00027 33.9 5.2 30 229-258 15-44 (150)
119 1xn7_A Hypothetical protein YH 65.4 6.8 0.00023 31.5 4.3 28 230-257 15-42 (78)
120 2ia0_A Putative HTH-type trans 65.2 7.9 0.00027 35.3 5.3 30 229-258 29-58 (171)
121 3t8r_A Staphylococcus aureus C 65.1 6.6 0.00023 34.8 4.6 46 109-154 10-55 (143)
122 1s7o_A Hypothetical UPF0122 pr 64.0 6.9 0.00024 33.5 4.4 36 230-265 37-72 (113)
123 2heo_A Z-DNA binding protein 1 64.0 8.3 0.00029 29.7 4.5 33 122-154 20-52 (67)
124 1xsv_A Hypothetical UPF0122 pr 64.0 7 0.00024 33.3 4.4 36 230-265 40-75 (113)
125 1uxc_A FRUR (1-57), fructose r 63.7 5.5 0.00019 30.8 3.4 22 232-253 1-22 (65)
126 2w25_A Probable transcriptiona 63.3 9.4 0.00032 33.5 5.3 29 229-257 19-47 (150)
127 1dxg_A Desulforedoxin; non-hem 62.4 3.8 0.00013 28.2 1.9 21 2-22 8-28 (36)
128 1ylf_A RRF2 family protein; st 62.0 10 0.00034 33.7 5.3 45 108-153 12-56 (149)
129 2w48_A Sorbitol operon regulat 61.6 9.6 0.00033 38.0 5.6 34 224-257 14-47 (315)
130 1or7_A Sigma-24, RNA polymeras 61.3 8.6 0.00029 34.5 4.8 36 230-265 155-190 (194)
131 1twf_I B12.6, DNA-directed RNA 61.3 4.3 0.00015 35.5 2.6 29 2-30 6-37 (122)
132 1tfi_A Transcriptional elongat 60.6 5.7 0.00019 29.4 2.7 28 2-29 11-47 (50)
133 2lfw_A PHYR sigma-like domain; 60.5 8.2 0.00028 34.1 4.4 36 230-265 108-143 (157)
134 2pmi_B PHO85 cyclin PHO80, ami 60.4 63 0.0022 32.4 11.2 93 157-263 70-166 (293)
135 2jt1_A PEFI protein; solution 59.7 10 0.00036 30.4 4.5 30 125-154 22-51 (77)
136 1q1h_A TFE, transcription fact 59.6 13 0.00045 30.7 5.3 31 228-258 30-60 (110)
137 2heo_A Z-DNA binding protein 1 59.3 12 0.00042 28.7 4.7 31 228-258 22-52 (67)
138 3v2d_5 50S ribosomal protein L 59.1 1.6 5.6E-05 33.7 -0.4 20 2-27 32-51 (60)
139 2zjr_Z 50S ribosomal protein L 58.5 1.8 6.2E-05 33.5 -0.3 20 2-27 32-51 (60)
140 3h0g_I DNA-directed RNA polyme 58.3 6.3 0.00022 33.9 3.1 29 2-30 6-37 (113)
141 2zcm_A Biofilm operon icaabcd 58.1 12 0.00043 32.8 5.2 51 211-262 7-58 (192)
142 2p5k_A Arginine repressor; DNA 57.6 18 0.0006 26.7 5.2 27 229-255 17-48 (64)
143 1zs4_A Regulatory protein CII; 57.6 7.1 0.00024 32.1 3.1 38 231-268 24-61 (83)
144 2a6h_F RNA polymerase sigma fa 57.0 1.9E+02 0.0063 30.1 14.8 31 230-260 379-409 (423)
145 3e6c_C CPRK, cyclic nucleotide 56.9 34 0.0012 31.8 8.4 28 230-257 176-203 (250)
146 2z99_A Putative uncharacterize 56.4 31 0.0011 33.2 7.9 44 109-156 16-59 (219)
147 3h4c_A Transcription factor TF 56.0 39 0.0013 32.4 8.2 60 167-237 18-81 (260)
148 3qkx_A Uncharacterized HTH-typ 55.9 10 0.00036 32.8 4.3 47 216-263 13-60 (188)
149 4esj_A Type-2 restriction enzy 55.9 4.3 0.00015 39.7 1.8 30 1-30 35-67 (257)
150 1oyi_A Double-stranded RNA-bin 55.6 13 0.00045 30.3 4.4 26 232-257 31-56 (82)
151 2d1h_A ST1889, 109AA long hypo 55.2 17 0.00059 29.0 5.2 29 229-257 34-62 (109)
152 1j5y_A Transcriptional regulat 54.9 17 0.00059 33.3 5.7 29 230-258 35-63 (187)
153 6rxn_A Rubredoxin; electron tr 54.8 3.2 0.00011 30.4 0.5 7 21-27 32-38 (46)
154 3r0a_A Putative transcriptiona 54.3 17 0.00057 31.1 5.2 38 220-257 30-68 (123)
155 3u50_C Telomerase-associated p 54.1 7.5 0.00026 36.1 3.1 25 2-28 44-68 (172)
156 3bqz_B HTH-type transcriptiona 54.0 16 0.00054 31.9 5.1 48 216-264 7-55 (194)
157 1j1v_A Chromosomal replication 53.7 70 0.0024 26.3 8.7 48 210-259 24-75 (94)
158 3k69_A Putative transcription 52.6 13 0.00044 33.7 4.4 45 109-154 11-55 (162)
159 3lwj_A Putative TETR-family tr 52.5 15 0.0005 32.4 4.7 46 216-262 17-63 (202)
160 1p4x_A Staphylococcal accessor 52.2 84 0.0029 30.3 10.4 30 125-154 48-77 (250)
161 1f5q_B Gamma herpesvirus cycli 51.9 48 0.0017 32.1 8.7 84 70-156 149-241 (252)
162 1j1v_A Chromosomal replication 51.9 35 0.0012 28.2 6.6 70 72-157 5-77 (94)
163 3ppb_A Putative TETR family tr 51.9 14 0.0005 32.0 4.5 48 215-263 13-61 (195)
164 2apo_B Ribosome biogenesis pro 51.8 4.9 0.00017 31.1 1.1 22 2-30 8-29 (60)
165 3f1b_A TETR-like transcription 51.8 16 0.00055 32.0 4.8 47 216-263 19-66 (203)
166 3dv8_A Transcriptional regulat 51.6 34 0.0011 30.8 7.1 28 230-257 168-195 (220)
167 3la7_A Global nitrogen regulat 51.5 36 0.0012 31.6 7.5 28 230-257 192-219 (243)
168 3vp5_A Transcriptional regulat 51.4 13 0.00045 33.0 4.2 49 215-264 16-65 (189)
169 2b0l_A GTP-sensing transcripti 51.4 10 0.00035 31.8 3.2 29 230-258 41-70 (102)
170 2hku_A A putative transcriptio 51.3 20 0.0007 32.1 5.6 50 213-263 22-71 (215)
171 2k02_A Ferrous iron transport 51.2 9.4 0.00032 31.5 2.9 28 230-257 15-42 (87)
172 3knw_A Putative transcriptiona 51.2 16 0.00055 32.3 4.8 49 214-263 17-66 (212)
173 4ham_A LMO2241 protein; struct 51.1 12 0.00041 32.5 3.8 30 228-257 34-64 (134)
174 2qtq_A Transcriptional regulat 50.6 22 0.00074 31.4 5.6 47 216-263 21-68 (213)
175 2riq_A Poly [ADP-ribose] polym 50.6 10 0.00035 34.8 3.3 30 2-36 80-111 (160)
176 3k2z_A LEXA repressor; winged 50.5 21 0.00072 32.9 5.6 31 227-257 20-50 (196)
177 2pg4_A Uncharacterized protein 50.5 27 0.00091 28.0 5.6 31 228-258 27-58 (95)
178 1l3l_A Transcriptional activat 50.4 17 0.00059 34.2 5.1 31 230-260 187-217 (234)
179 3dew_A Transcriptional regulat 50.3 17 0.00058 31.8 4.7 48 216-264 13-61 (206)
180 2g2k_A EIF-5, eukaryotic trans 50.2 9.6 0.00033 35.4 3.1 29 2-30 98-130 (170)
181 3cuo_A Uncharacterized HTH-typ 50.0 18 0.00061 28.7 4.4 29 229-257 36-64 (99)
182 2y75_A HTH-type transcriptiona 50.0 21 0.00072 30.4 5.2 29 229-257 24-52 (129)
183 2nnn_A Probable transcriptiona 49.9 61 0.0021 26.9 8.1 28 231-258 52-79 (140)
184 2q0o_A Probable transcriptiona 49.9 14 0.00048 34.9 4.4 31 230-260 189-219 (236)
185 1pb6_A Hypothetical transcript 49.7 19 0.00064 31.9 5.0 47 216-263 23-70 (212)
186 2fmy_A COOA, carbon monoxide o 49.6 37 0.0013 30.7 7.1 28 230-257 166-193 (220)
187 3jth_A Transcription activator 49.5 18 0.00063 29.0 4.5 28 230-257 35-62 (98)
188 2hr3_A Probable transcriptiona 49.3 1.2E+02 0.004 25.4 10.0 30 229-258 48-77 (147)
189 2gau_A Transcriptional regulat 49.3 46 0.0016 30.3 7.7 28 230-257 179-206 (232)
190 2l8n_A Transcriptional repress 49.2 12 0.00039 29.1 3.0 22 231-252 9-30 (67)
191 2g7s_A Transcriptional regulat 49.2 14 0.0005 31.9 4.1 48 216-264 13-61 (194)
192 3t72_q RNA polymerase sigma fa 49.1 21 0.00071 29.8 4.8 33 230-262 38-70 (99)
193 3lwf_A LIN1550 protein, putati 48.8 21 0.0007 32.4 5.1 40 219-258 32-71 (159)
194 2hzt_A Putative HTH-type trans 48.6 28 0.00097 28.7 5.6 30 229-258 25-55 (107)
195 3lhq_A Acrab operon repressor 48.4 19 0.00065 31.8 4.8 47 216-263 19-66 (220)
196 1jhg_A Trp operon repressor; c 48.4 22 0.00074 30.2 4.8 27 230-257 57-83 (101)
197 3b02_A Transcriptional regulat 48.3 29 0.001 30.9 6.1 29 230-258 138-166 (195)
198 1sfx_A Conserved hypothetical 48.2 20 0.00069 28.5 4.5 29 230-258 33-61 (109)
199 3dcf_A Transcriptional regulat 47.9 18 0.00061 32.1 4.5 47 216-263 36-83 (218)
200 3tqn_A Transcriptional regulat 47.6 15 0.00052 30.9 3.8 29 229-257 30-59 (113)
201 3bro_A Transcriptional regulat 47.5 79 0.0027 26.2 8.5 29 230-258 49-77 (141)
202 3kz9_A SMCR; transcriptional r 47.3 18 0.0006 31.7 4.4 47 216-263 22-69 (206)
203 1y0u_A Arsenical resistance op 47.1 19 0.00064 29.0 4.1 29 230-258 42-70 (96)
204 1zx4_A P1 PARB, plasmid partit 46.9 20 0.00069 33.8 4.8 35 229-263 22-58 (192)
205 3cwr_A Transcriptional regulat 46.6 16 0.00056 32.0 4.0 47 216-263 22-69 (208)
206 1xd7_A YWNA; structural genomi 46.6 22 0.00075 31.3 4.8 45 107-154 6-50 (145)
207 3b73_A PHIH1 repressor-like pr 46.5 23 0.00078 30.3 4.7 28 231-258 27-56 (111)
208 4rxn_A Rubredoxin; electron tr 46.3 7 0.00024 29.5 1.2 12 20-31 4-15 (54)
209 3bni_A Putative TETR-family tr 46.2 21 0.00072 32.7 4.8 49 215-264 47-96 (229)
210 1uly_A Hypothetical protein PH 46.2 24 0.00083 32.8 5.3 29 230-258 32-60 (192)
211 3pqk_A Biofilm growth-associat 45.9 22 0.00074 28.9 4.4 28 230-257 35-62 (102)
212 3col_A Putative transcription 45.8 12 0.00042 32.5 3.0 48 215-263 14-62 (196)
213 3kjx_A Transcriptional regulat 45.8 19 0.00064 35.4 4.7 36 231-266 10-52 (344)
214 3neu_A LIN1836 protein; struct 45.7 20 0.00069 30.8 4.3 29 229-257 34-63 (125)
215 1d0q_A DNA primase; zinc-bindi 45.6 14 0.00048 30.9 3.2 26 2-27 39-66 (103)
216 2kko_A Possible transcriptiona 45.2 25 0.00084 29.2 4.7 28 230-257 37-64 (108)
217 3qt1_I DNA-directed RNA polyme 44.8 7.9 0.00027 34.5 1.5 29 2-30 26-57 (133)
218 3by6_A Predicted transcription 44.7 17 0.00059 31.3 3.8 29 229-257 32-61 (126)
219 3mvp_A TETR/ACRR transcription 44.5 17 0.0006 32.1 3.9 48 216-264 31-79 (217)
220 3on4_A Transcriptional regulat 44.5 19 0.00064 31.2 4.0 48 216-264 15-63 (191)
221 2d6y_A Putative TETR family re 44.4 31 0.0011 30.8 5.6 45 216-261 13-58 (202)
222 3c2b_A Transcriptional regulat 44.3 24 0.00081 31.6 4.8 47 216-263 20-67 (221)
223 3tgn_A ADC operon repressor AD 44.2 47 0.0016 28.0 6.5 26 232-257 52-77 (146)
224 2yve_A Transcriptional regulat 44.1 21 0.00073 31.4 4.4 47 216-263 9-56 (185)
225 3lsg_A Two-component response 44.1 39 0.0013 27.3 5.7 34 222-255 10-43 (103)
226 1tty_A Sigma-A, RNA polymerase 43.9 39 0.0013 26.8 5.5 34 126-159 37-70 (87)
227 1ylf_A RRF2 family protein; st 43.9 22 0.00074 31.5 4.3 38 219-257 19-56 (149)
228 2zb9_A Putative transcriptiona 43.8 18 0.00061 32.4 3.9 32 228-259 39-71 (214)
229 2ao9_A Phage protein; structur 43.7 50 0.0017 30.0 6.8 34 231-264 48-84 (155)
230 2guh_A Putative TETR-family tr 43.5 23 0.00078 32.3 4.6 49 216-265 44-93 (214)
231 2jpc_A SSRB; DNA binding prote 43.4 24 0.00084 25.6 3.9 32 127-158 13-44 (61)
232 2fq4_A Transcriptional regulat 43.2 27 0.00091 30.8 4.9 46 216-262 17-63 (192)
233 3bru_A Regulatory protein, TET 43.2 22 0.00075 31.8 4.4 47 216-263 35-82 (222)
234 3s5r_A Transcriptional regulat 43.0 23 0.0008 31.3 4.5 48 215-263 14-62 (216)
235 3oou_A LIN2118 protein; protei 43.0 38 0.0013 27.6 5.5 39 216-255 7-45 (108)
236 3dpj_A Transcription regulator 43.0 27 0.00091 30.5 4.8 47 216-263 13-60 (194)
237 3ryp_A Catabolite gene activat 42.9 32 0.0011 30.7 5.5 28 230-257 166-193 (210)
238 3t8r_A Staphylococcus aureus C 42.9 19 0.00066 31.7 3.9 40 219-258 16-55 (143)
239 3f0c_A TETR-molecule A, transc 42.5 26 0.00091 31.0 4.8 48 215-263 15-63 (216)
240 2v57_A TETR family transcripti 42.5 15 0.00052 32.0 3.1 34 230-263 31-64 (190)
241 1on2_A Transcriptional regulat 42.4 43 0.0015 28.5 6.0 28 230-257 21-48 (142)
242 2k9s_A Arabinose operon regula 42.4 39 0.0013 27.5 5.5 52 112-171 5-56 (107)
243 3r0a_A Putative transcriptiona 42.3 27 0.00093 29.7 4.6 38 117-154 31-69 (123)
244 3szt_A QCSR, quorum-sensing co 42.2 19 0.00063 34.3 3.9 31 230-260 189-219 (237)
245 1ku9_A Hypothetical protein MJ 42.2 64 0.0022 26.9 7.1 29 229-257 39-67 (152)
246 2oz6_A Virulence factor regula 42.1 34 0.0012 30.5 5.5 28 230-257 163-190 (207)
247 3cng_A Nudix hydrolase; struct 42.0 16 0.00054 33.2 3.2 28 2-29 5-35 (189)
248 1qgp_A Protein (double strande 42.0 32 0.0011 27.2 4.6 29 126-154 30-58 (77)
249 2qwt_A Transcriptional regulat 41.9 25 0.00085 31.2 4.5 47 216-263 18-64 (196)
250 3qbm_A TETR transcriptional re 41.9 20 0.00068 31.3 3.8 47 216-263 12-59 (199)
251 3he0_A Transcriptional regulat 41.9 20 0.00069 31.2 3.8 48 213-261 13-61 (196)
252 3d0s_A Transcriptional regulat 41.8 59 0.002 29.4 7.2 28 230-257 176-203 (227)
253 2x4h_A Hypothetical protein SS 41.8 39 0.0013 28.6 5.6 30 229-258 29-58 (139)
254 3lsg_A Two-component response 41.7 51 0.0017 26.6 6.0 50 114-171 6-55 (103)
255 3dkw_A DNR protein; CRP-FNR, H 41.7 37 0.0013 30.7 5.7 29 230-258 177-205 (227)
256 1t33_A Putative transcriptiona 41.5 29 0.00099 31.0 5.0 47 216-263 17-63 (224)
257 2zcw_A TTHA1359, transcription 41.4 35 0.0012 30.5 5.5 28 230-257 145-172 (202)
258 2dg8_A Putative TETR-family tr 41.4 18 0.0006 32.0 3.4 49 214-263 12-61 (193)
259 3clo_A Transcriptional regulat 41.3 19 0.00065 34.5 3.8 31 230-260 211-241 (258)
260 3oou_A LIN2118 protein; protei 41.3 41 0.0014 27.5 5.4 52 111-171 6-57 (108)
261 2k9s_A Arabinose operon regula 41.1 36 0.0012 27.8 5.1 37 219-255 8-44 (107)
262 3pas_A TETR family transcripti 41.1 14 0.00049 32.0 2.7 47 216-263 13-60 (195)
263 3nrv_A Putative transcriptiona 41.0 97 0.0033 26.0 8.1 28 231-258 54-81 (148)
264 3mn2_A Probable ARAC family tr 41.0 49 0.0017 26.9 5.9 51 112-171 4-54 (108)
265 3gzi_A Transcriptional regulat 40.9 23 0.00079 31.5 4.1 36 228-263 33-69 (218)
266 3df8_A Possible HXLR family tr 40.9 38 0.0013 28.3 5.3 27 232-258 43-70 (111)
267 4aci_A HTH-type transcriptiona 40.9 19 0.00063 31.5 3.4 49 215-264 18-67 (191)
268 2rdp_A Putative transcriptiona 40.8 1.3E+02 0.0045 25.2 8.9 28 231-258 56-83 (150)
269 3h5t_A Transcriptional regulat 40.8 23 0.00079 35.0 4.5 39 230-268 8-53 (366)
270 1vk6_A NADH pyrophosphatase; 1 40.7 15 0.0005 36.2 3.0 30 2-32 109-138 (269)
271 1sgm_A Putative HTH-type trans 40.7 18 0.00062 31.3 3.3 49 215-264 10-60 (191)
272 2f2e_A PA1607; transcription f 40.6 38 0.0013 29.8 5.4 29 230-258 36-64 (146)
273 1e8j_A Rubredoxin; iron-sulfur 40.5 7.2 0.00025 29.1 0.5 13 19-31 3-15 (52)
274 3e97_A Transcriptional regulat 40.4 47 0.0016 30.2 6.3 28 230-257 174-201 (231)
275 2ek5_A Predicted transcription 40.3 23 0.00078 30.7 3.8 29 229-257 25-54 (129)
276 3b81_A Transcriptional regulat 40.3 22 0.00074 31.2 3.8 47 216-263 16-63 (203)
277 2l0k_A Stage III sporulation p 40.3 17 0.00059 30.2 2.8 23 232-254 21-43 (93)
278 1twf_I B12.6, DNA-directed RNA 40.1 21 0.00071 31.0 3.5 31 2-32 74-113 (122)
279 3pvv_A Chromosomal replication 40.0 63 0.0022 27.1 6.4 70 72-157 9-80 (101)
280 3fm5_A Transcriptional regulat 39.8 94 0.0032 26.3 7.8 30 228-257 51-80 (150)
281 1ub9_A Hypothetical protein PH 39.7 22 0.00074 28.2 3.4 28 231-258 30-57 (100)
282 2rek_A Putative TETR-family tr 39.6 26 0.00089 30.9 4.3 47 216-263 21-67 (199)
283 2htj_A P fimbrial regulatory p 39.4 49 0.0017 25.7 5.4 29 126-154 13-41 (81)
284 3jsj_A Putative TETR-family tr 39.4 31 0.0011 30.0 4.7 46 216-262 14-59 (190)
285 2jj7_A Hemolysin II regulatory 39.2 21 0.00071 31.1 3.4 38 228-265 23-61 (186)
286 3q0w_A HTH-type transcriptiona 39.2 19 0.00066 33.0 3.4 47 216-263 49-96 (236)
287 3mn2_A Probable ARAC family tr 38.9 58 0.002 26.4 6.0 36 219-255 7-42 (108)
288 3g3z_A NMB1585, transcriptiona 38.8 1.2E+02 0.0042 25.3 8.4 27 231-257 45-71 (145)
289 3kcc_A Catabolite gene activat 38.7 44 0.0015 31.4 6.0 28 230-257 216-243 (260)
290 3g7r_A Putative transcriptiona 38.7 32 0.0011 31.1 4.8 48 215-263 39-87 (221)
291 3nnr_A Transcriptional regulat 38.6 24 0.00081 32.0 3.9 46 216-262 10-56 (228)
292 3o60_A LIN0861 protein; PSI, M 38.6 16 0.00054 32.9 2.6 34 228-261 36-70 (185)
293 3bpv_A Transcriptional regulat 38.5 39 0.0013 28.2 5.0 30 229-258 41-70 (138)
294 1r1u_A CZRA, repressor protein 38.5 37 0.0013 27.8 4.7 28 230-257 38-65 (106)
295 3cjd_A Transcriptional regulat 38.4 25 0.00084 31.4 3.9 48 215-263 16-64 (198)
296 3frw_A Putative Trp repressor 38.3 46 0.0016 28.5 5.3 32 224-255 51-82 (107)
297 2ct7_A Ring finger protein 31; 38.2 21 0.0007 28.9 3.0 28 2-30 27-54 (86)
298 4a5n_A Uncharacterized HTH-typ 38.1 50 0.0017 28.9 5.7 30 229-258 37-67 (131)
299 3rd3_A Probable transcriptiona 38.0 20 0.00069 31.2 3.2 47 215-262 14-61 (197)
300 3mnl_A KSTR, transcriptional r 38.0 16 0.00054 32.1 2.5 36 228-263 36-72 (203)
301 3e6c_C CPRK, cyclic nucleotide 38.0 71 0.0024 29.6 7.2 30 125-154 175-204 (250)
302 2p7v_B Sigma-70, RNA polymeras 37.9 25 0.00087 26.4 3.3 33 126-158 24-56 (68)
303 1qbj_A Protein (double-strande 37.9 48 0.0016 26.6 5.1 29 126-154 26-54 (81)
304 3rh2_A Hypothetical TETR-like 37.8 27 0.00091 31.2 4.0 43 216-259 8-51 (212)
305 3nxc_A HTH-type protein SLMA; 37.8 16 0.00055 32.3 2.5 50 214-263 27-77 (212)
306 2id3_A Putative transcriptiona 37.6 32 0.0011 31.3 4.6 47 216-263 45-92 (225)
307 2oqg_A Possible transcriptiona 37.4 31 0.0011 28.2 4.1 27 231-257 34-60 (114)
308 2fu4_A Ferric uptake regulatio 37.3 55 0.0019 25.3 5.4 28 230-257 32-64 (83)
309 2ibd_A Possible transcriptiona 37.3 36 0.0012 30.2 4.8 41 216-257 19-60 (204)
310 2lkp_A Transcriptional regulat 37.2 31 0.0011 28.6 4.1 27 231-257 45-71 (119)
311 2gxg_A 146AA long hypothetical 37.2 1.2E+02 0.0042 25.2 8.1 30 229-258 48-77 (146)
312 1l1o_C Replication protein A 7 37.2 17 0.00058 33.6 2.6 27 2-30 45-73 (181)
313 3eco_A MEPR; mutlidrug efflux 37.2 40 0.0014 28.2 4.9 29 230-258 46-74 (139)
314 3bdd_A Regulatory protein MARR 37.2 1.5E+02 0.0052 24.4 8.6 28 231-258 45-72 (142)
315 3egq_A TETR family transcripti 37.1 17 0.0006 31.1 2.6 36 228-263 20-56 (170)
316 3vib_A MTRR; helix-turn-helix 37.1 35 0.0012 30.4 4.7 27 228-254 26-53 (210)
317 2o7t_A Transcriptional regulat 36.9 24 0.00083 31.1 3.6 47 217-264 14-61 (199)
318 3qp6_A CVIR transcriptional re 36.8 25 0.00085 34.1 3.9 31 230-260 211-241 (265)
319 3vpr_A Transcriptional regulat 36.8 41 0.0014 29.4 5.1 41 216-257 8-49 (190)
320 2hsg_A Glucose-resistance amyl 36.7 19 0.00064 35.1 3.0 38 231-268 2-46 (332)
321 2ras_A Transcriptional regulat 36.7 22 0.00074 31.7 3.2 48 216-264 16-64 (212)
322 3ech_A MEXR, multidrug resista 36.6 92 0.0031 26.1 7.2 27 231-257 51-77 (142)
323 3kkc_A TETR family transcripti 36.6 9.6 0.00033 32.9 0.8 34 228-261 28-62 (177)
324 2elh_A CG11849-PA, LD40883P; s 36.6 42 0.0014 26.7 4.6 28 232-259 39-66 (87)
325 3bj6_A Transcriptional regulat 36.5 85 0.0029 26.5 7.0 28 231-258 54-81 (152)
326 1zyb_A Transcription regulator 36.4 46 0.0016 30.6 5.5 28 230-257 185-212 (232)
327 3bvo_A CO-chaperone protein HS 36.4 11 0.00037 35.9 1.1 29 2-32 12-40 (207)
328 3nqo_A MARR-family transcripti 36.3 1.1E+02 0.0038 27.4 8.1 29 229-257 55-83 (189)
329 2fmy_A COOA, carbon monoxide o 36.2 54 0.0019 29.6 5.9 29 126-154 166-194 (220)
330 2nyx_A Probable transcriptiona 36.1 1.1E+02 0.0039 26.6 7.9 28 231-258 59-86 (168)
331 1rzs_A Antirepressor, regulato 36.1 22 0.00075 26.6 2.7 20 232-251 11-30 (61)
332 1fse_A GERE; helix-turn-helix 36.0 55 0.0019 24.3 5.1 32 127-158 26-57 (74)
333 1zk8_A Transcriptional regulat 36.0 18 0.00062 31.4 2.5 49 214-263 11-60 (183)
334 3bro_A Transcriptional regulat 35.9 57 0.002 27.2 5.7 38 117-154 40-77 (141)
335 2xi8_A Putative transcription 35.8 25 0.00087 25.4 3.0 23 230-252 13-35 (66)
336 2w48_A Sorbitol operon regulat 35.8 1.3E+02 0.0046 29.5 9.2 31 124-154 18-48 (315)
337 2rae_A Transcriptional regulat 35.8 41 0.0014 29.6 4.9 38 215-253 21-59 (207)
338 3dv8_A Transcriptional regulat 35.6 63 0.0022 28.9 6.3 43 112-154 151-196 (220)
339 3deu_A Transcriptional regulat 35.6 1.4E+02 0.0049 26.0 8.5 29 229-257 66-94 (166)
340 2q24_A Putative TETR family tr 35.6 39 0.0013 29.6 4.7 47 215-262 19-65 (194)
341 3oio_A Transcriptional regulat 35.6 49 0.0017 27.2 5.1 27 229-255 21-47 (113)
342 2iai_A Putative transcriptiona 35.5 23 0.0008 32.3 3.3 47 215-262 34-81 (230)
343 3bhq_A Transcriptional regulat 35.2 51 0.0017 29.3 5.5 27 228-254 28-55 (211)
344 1neq_A DNA-binding protein NER 35.2 36 0.0012 26.6 3.9 22 230-251 21-42 (74)
345 3fx3_A Cyclic nucleotide-bindi 35.1 49 0.0017 30.2 5.5 30 229-258 176-205 (237)
346 3bqy_A Putative TETR family tr 35.1 33 0.0011 31.4 4.3 50 214-264 5-55 (209)
347 2gen_A Probable transcriptiona 34.9 42 0.0014 29.7 4.9 38 216-254 12-50 (197)
348 2zcx_A SCO7815, TETR-family tr 34.8 40 0.0014 31.1 4.8 48 215-263 27-75 (231)
349 2qib_A TETR-family transcripti 34.8 25 0.00087 32.1 3.4 47 216-263 18-65 (231)
350 3la7_A Global nitrogen regulat 34.7 66 0.0023 29.7 6.4 30 125-154 191-220 (243)
351 2q1z_A RPOE, ECF SIGE; ECF sig 34.7 10 0.00034 33.7 0.6 33 230-262 150-182 (184)
352 3frq_A Repressor protein MPHR( 34.7 26 0.00088 30.8 3.3 48 216-264 13-61 (195)
353 2pg4_A Uncharacterized protein 34.7 41 0.0014 26.9 4.3 33 122-154 25-58 (95)
354 2fbh_A Transcriptional regulat 34.7 51 0.0017 27.6 5.1 31 228-258 49-79 (146)
355 3anp_C Transcriptional repress 34.6 34 0.0012 30.3 4.2 27 228-254 25-52 (204)
356 1z7u_A Hypothetical protein EF 34.4 47 0.0016 27.5 4.8 28 231-258 35-63 (112)
357 1ku3_A Sigma factor SIGA; heli 34.2 54 0.0019 24.8 4.8 31 126-156 29-59 (73)
358 2kdx_A HYPA, hydrogenase/ureas 34.2 13 0.00046 31.9 1.3 22 2-26 75-97 (119)
359 3kor_A Possible Trp repressor; 34.1 51 0.0017 28.8 4.9 34 222-255 66-99 (119)
360 3e7q_A Transcriptional regulat 34.1 21 0.00072 31.5 2.6 34 230-263 33-66 (215)
361 2r1j_L Repressor protein C2; p 34.0 28 0.00096 25.3 3.0 21 231-251 18-38 (68)
362 1z4h_A TORI, TOR inhibition pr 34.0 31 0.001 26.2 3.2 52 232-293 11-62 (66)
363 2kn9_A Rubredoxin; metalloprot 33.9 15 0.0005 30.1 1.4 15 18-32 26-40 (81)
364 3iwz_A CAP-like, catabolite ac 33.9 53 0.0018 29.7 5.5 28 230-257 186-213 (230)
365 3omt_A Uncharacterized protein 33.8 28 0.00095 26.1 3.0 23 231-253 21-43 (73)
366 1r69_A Repressor protein CI; g 33.8 28 0.00097 25.4 3.0 22 230-251 13-34 (69)
367 3dkw_A DNR protein; CRP-FNR, H 33.6 52 0.0018 29.7 5.4 30 125-154 176-205 (227)
368 1qpz_A PURA, protein (purine n 33.6 25 0.00086 34.4 3.4 37 232-268 1-44 (340)
369 2g7g_A RHA04620, putative tran 33.6 41 0.0014 30.7 4.7 51 212-264 12-62 (213)
370 3oio_A Transcriptional regulat 33.6 61 0.0021 26.6 5.3 52 111-171 8-59 (113)
371 2oi8_A Putative regulatory pro 33.6 32 0.0011 31.4 3.9 47 216-263 21-68 (216)
372 2eh3_A Transcriptional regulat 33.5 46 0.0016 28.7 4.8 27 228-254 18-45 (179)
373 1vi0_A Transcriptional regulat 33.5 35 0.0012 30.6 4.1 41 216-257 13-54 (206)
374 2gau_A Transcriptional regulat 33.4 81 0.0028 28.6 6.7 30 125-154 178-207 (232)
375 3kz3_A Repressor protein CI; f 33.1 29 0.00098 26.7 3.0 24 230-253 24-47 (80)
376 3f6o_A Probable transcriptiona 33.1 38 0.0013 28.3 4.0 28 230-257 30-57 (118)
377 1ug2_A 2610100B20RIK gene prod 33.0 81 0.0028 26.3 5.7 43 115-157 42-86 (95)
378 1v4r_A Transcriptional repress 33.0 12 0.00042 30.7 0.8 28 230-257 33-61 (102)
379 2vut_I AREA, nitrogen regulato 33.0 11 0.00038 27.1 0.5 27 2-28 3-31 (43)
380 4gat_A Nitrogen regulatory pro 32.9 9.9 0.00034 29.9 0.2 29 2-30 11-41 (66)
381 2qko_A Possible transcriptiona 32.9 22 0.00075 31.9 2.6 48 216-264 33-81 (215)
382 1uxc_A FRUR (1-57), fructose r 32.9 72 0.0024 24.3 5.2 22 128-149 1-22 (65)
383 1lj9_A Transcriptional regulat 32.8 1.1E+02 0.0037 25.5 7.0 29 230-258 42-70 (144)
384 2nnn_A Probable transcriptiona 32.8 1.3E+02 0.0044 24.7 7.4 28 127-154 52-79 (140)
385 1zug_A Phage 434 CRO protein; 32.7 30 0.001 25.4 3.0 22 230-251 15-36 (71)
386 1r1t_A Transcriptional repress 32.7 68 0.0023 27.2 5.6 28 230-257 58-85 (122)
387 3hta_A EBRA repressor; TETR fa 32.6 35 0.0012 30.8 4.0 47 216-263 33-80 (217)
388 2pex_A Transcriptional regulat 32.6 1.7E+02 0.0059 24.6 8.4 29 230-258 60-88 (153)
389 2qvo_A Uncharacterized protein 32.4 66 0.0023 25.6 5.2 28 230-257 29-56 (95)
390 2eth_A Transcriptional regulat 32.4 77 0.0026 27.1 6.0 28 231-258 58-85 (154)
391 2d1h_A ST1889, 109AA long hypo 32.3 50 0.0017 26.2 4.5 31 124-154 33-63 (109)
392 3k2z_A LEXA repressor; winged 32.2 58 0.002 29.8 5.4 37 117-153 14-50 (196)
393 3ljl_A Transcriptional regulat 32.0 20 0.00067 30.9 2.0 47 216-263 19-66 (156)
394 1jgs_A Multiple antibiotic res 32.0 1.7E+02 0.0058 24.0 8.1 29 230-258 47-75 (138)
395 2xdn_A HTH-type transcriptiona 32.0 35 0.0012 30.4 3.8 38 216-254 16-54 (210)
396 2a6c_A Helix-turn-helix motif; 31.9 84 0.0029 24.3 5.6 25 229-253 29-53 (83)
397 1vzi_A Desulfoferrodoxin; ferr 31.8 19 0.00066 31.5 1.9 27 2-30 9-35 (126)
398 1s3j_A YUSO protein; structura 31.7 93 0.0032 26.3 6.4 28 231-258 51-78 (155)
399 1pdn_C Protein (PRD paired); p 31.7 48 0.0016 27.1 4.4 27 231-257 33-59 (128)
400 3b02_A Transcriptional regulat 31.7 63 0.0022 28.6 5.5 29 126-154 138-166 (195)
401 3ulq_B Transcriptional regulat 31.6 52 0.0018 26.6 4.4 32 127-158 44-75 (90)
402 2fa5_A Transcriptional regulat 31.4 62 0.0021 27.8 5.2 30 229-258 61-90 (162)
403 1yk4_A Rubredoxin, RD; electro 31.4 14 0.0005 27.5 0.9 12 20-31 3-14 (52)
404 2pz9_A Putative regulatory pro 31.4 23 0.0008 32.2 2.6 43 214-257 33-76 (226)
405 2hyt_A TETR-family transcripti 31.3 45 0.0015 29.4 4.4 36 228-263 28-64 (197)
406 2a61_A Transcriptional regulat 31.2 2E+02 0.0068 23.8 8.4 29 230-258 46-74 (145)
407 3ryp_A Catabolite gene activat 31.2 54 0.0019 29.1 5.0 29 126-154 166-194 (210)
408 3mkl_A HTH-type transcriptiona 31.2 50 0.0017 27.5 4.5 38 216-254 9-46 (120)
409 2o3f_A Putative HTH-type trans 31.1 33 0.0011 29.0 3.2 23 231-253 39-61 (111)
410 1xwr_A Regulatory protein CII; 31.0 27 0.00093 29.3 2.6 35 231-265 23-57 (97)
411 2glo_A Brinker CG9653-PA; prot 30.9 45 0.0015 24.4 3.6 28 234-261 28-55 (59)
412 1zyb_A Transcription regulator 30.9 88 0.003 28.6 6.5 30 125-154 184-213 (232)
413 2k9q_A Uncharacterized protein 30.8 33 0.0011 26.1 3.0 22 230-251 14-35 (77)
414 1u2w_A CADC repressor, cadmium 30.8 50 0.0017 27.9 4.4 28 230-257 55-82 (122)
415 1je8_A Nitrate/nitrite respons 30.8 49 0.0017 26.0 4.1 32 127-158 36-67 (82)
416 2jn6_A Protein CGL2762, transp 30.8 42 0.0014 27.0 3.7 26 231-256 23-48 (97)
417 2f07_A YVDT; helix-turn-helix, 30.7 45 0.0016 29.5 4.3 37 216-253 15-52 (197)
418 1gnf_A Transcription factor GA 30.6 9.3 0.00032 27.9 -0.3 27 2-28 6-34 (46)
419 4ev0_A Transcription regulator 30.6 60 0.0021 29.0 5.2 28 230-257 162-189 (216)
420 3c07_A Putative TETR-family tr 30.4 43 0.0015 31.9 4.4 47 216-263 46-93 (273)
421 1x3u_A Transcriptional regulat 30.4 72 0.0025 24.1 4.9 32 127-158 31-62 (79)
422 3fmy_A HTH-type transcriptiona 30.3 23 0.00078 27.1 1.9 21 230-250 23-43 (73)
423 3b7h_A Prophage LP1 protein 11 30.3 34 0.0012 25.7 2.9 22 230-251 19-40 (78)
424 2oz6_A Virulence factor regula 30.2 58 0.002 28.9 5.0 29 126-154 163-191 (207)
425 3geu_A Intercellular adhesion 30.2 15 0.00052 32.1 1.0 34 230-263 22-55 (189)
426 4a0z_A Transcription factor FA 30.2 38 0.0013 31.5 3.8 27 230-256 25-51 (190)
427 2iu5_A DHAS, YCEG, HTH-type dh 30.2 13 0.00045 32.9 0.6 48 214-262 16-64 (195)
428 1j9i_A GPNU1 DBD;, terminase s 30.2 24 0.00083 26.8 2.1 53 231-293 2-55 (68)
429 3mkl_A HTH-type transcriptiona 30.0 69 0.0024 26.6 5.2 51 111-171 8-58 (120)
430 3e97_A Transcriptional regulat 30.0 66 0.0023 29.2 5.4 30 125-154 173-202 (231)
431 1u78_A TC3 transposase, transp 29.9 89 0.0031 26.1 5.9 72 73-150 24-102 (141)
432 2opt_A Actii protein; helical 29.9 60 0.0021 30.4 5.3 51 212-263 7-58 (234)
433 1adr_A P22 C2 repressor; trans 29.8 34 0.0012 25.5 2.8 21 231-251 18-38 (76)
434 3nrv_A Putative transcriptiona 29.8 69 0.0023 27.0 5.2 31 123-154 51-81 (148)
435 2jsc_A Transcriptional regulat 29.8 34 0.0012 28.8 3.1 27 231-257 34-60 (118)
436 2v3b_B Rubredoxin 2, rubredoxi 29.8 18 0.00062 27.3 1.2 13 19-31 3-15 (55)
437 3hrs_A Metalloregulator SCAR; 29.7 40 0.0014 31.6 3.9 30 229-258 18-47 (214)
438 2of7_A Putative TETR-family tr 29.7 50 0.0017 30.8 4.7 44 216-260 53-97 (260)
439 2zkr_2 60S ribosomal protein L 29.6 19 0.00066 30.3 1.4 22 2-27 18-39 (97)
440 3iwf_A Transcription regulator 29.6 43 0.0015 28.2 3.7 24 230-253 34-57 (107)
441 2fsw_A PG_0823 protein; alpha- 29.6 64 0.0022 26.4 4.8 28 230-257 37-65 (107)
442 2i10_A Putative TETR transcrip 29.6 72 0.0025 28.3 5.5 46 216-262 16-62 (202)
443 1y7y_A C.AHDI; helix-turn-heli 29.5 36 0.0012 25.2 2.9 23 230-252 25-47 (74)
444 1rkt_A Protein YFIR; transcrip 29.4 60 0.002 28.7 4.9 27 228-254 28-55 (205)
445 3h0g_L DNA-directed RNA polyme 29.2 18 0.0006 28.2 1.0 25 2-28 23-47 (63)
446 1bl0_A Protein (multiple antib 29.2 72 0.0025 26.9 5.2 53 110-171 11-63 (129)
447 3cjn_A Transcriptional regulat 29.2 54 0.0019 28.2 4.5 29 230-258 65-93 (162)
448 2b5a_A C.BCLI; helix-turn-heli 29.2 36 0.0012 25.4 2.9 23 230-252 22-44 (77)
449 3c7j_A Transcriptional regulat 29.1 47 0.0016 31.5 4.4 39 229-269 47-85 (237)
450 2bgc_A PRFA; bacterial infecti 29.1 88 0.003 28.7 6.2 28 230-257 167-196 (238)
451 2o8x_A Probable RNA polymerase 29.1 60 0.0021 23.8 4.2 31 127-157 31-61 (70)
452 2dg7_A Putative transcriptiona 29.0 40 0.0014 29.5 3.6 41 216-257 12-53 (195)
453 2aus_D NOP10, ribosome biogene 28.9 10 0.00036 29.2 -0.3 22 2-30 7-28 (60)
454 2np5_A Transcriptional regulat 28.9 46 0.0016 29.6 4.0 38 216-254 14-52 (203)
455 1gdt_A GD resolvase, protein ( 28.9 1.2E+02 0.004 27.3 6.8 59 191-253 122-180 (183)
456 1ui5_A A-factor receptor homol 28.8 59 0.002 29.3 4.8 37 216-253 14-51 (215)
457 1ft9_A Carbon monoxide oxidati 28.8 47 0.0016 30.1 4.2 28 230-257 162-189 (222)
458 3g1o_A Transcriptional regulat 28.8 27 0.00092 32.4 2.5 47 216-263 48-95 (255)
459 3t76_A VANU, transcriptional r 28.7 36 0.0012 27.5 2.9 24 230-253 36-59 (88)
460 1yyv_A Putative transcriptiona 28.7 60 0.002 28.0 4.6 29 230-258 47-76 (131)
461 1bia_A BIRA bifunctional prote 28.6 57 0.002 32.5 5.1 29 229-257 17-45 (321)
462 3h5o_A Transcriptional regulat 28.5 12 0.00041 36.7 0.0 38 231-268 4-48 (339)
463 3bs3_A Putative DNA-binding pr 28.4 38 0.0013 25.2 2.9 23 230-252 22-44 (76)
464 1dx8_A Rubredoxin; electron tr 28.3 18 0.0006 28.7 0.9 14 18-31 6-19 (70)
465 2fbi_A Probable transcriptiona 28.3 48 0.0016 27.6 3.8 28 231-258 50-77 (142)
466 1z91_A Organic hydroperoxide r 28.2 69 0.0024 26.9 4.9 28 231-258 54-81 (147)
467 3on2_A Probable transcriptiona 28.1 14 0.00048 32.2 0.4 48 214-262 15-63 (199)
468 2dk5_A DNA-directed RNA polyme 28.1 82 0.0028 25.7 5.1 29 229-257 34-62 (91)
469 3crj_A Transcription regulator 28.0 45 0.0015 29.6 3.8 38 216-254 19-57 (199)
470 2kpj_A SOS-response transcript 28.0 57 0.002 25.8 4.1 23 229-251 20-42 (94)
471 3cdl_A Transcriptional regulat 27.9 67 0.0023 28.4 5.0 37 216-253 14-51 (203)
472 2au3_A DNA primase; zinc ribbo 27.9 33 0.0011 35.5 3.2 26 2-27 36-63 (407)
473 2qdj_A Retinoblastoma-associat 27.8 1.9E+02 0.0066 28.9 8.7 70 168-248 6-80 (304)
474 1sfx_A Conserved hypothetical 27.8 80 0.0027 24.8 5.0 29 126-154 33-61 (109)
475 2qww_A Transcriptional regulat 27.8 59 0.002 27.6 4.4 28 230-257 54-81 (154)
476 3c57_A Two component transcrip 27.8 60 0.0021 26.2 4.2 31 128-158 43-73 (95)
477 2zcw_A TTHA1359, transcription 27.8 67 0.0023 28.6 5.0 30 125-154 144-173 (202)
478 2di3_A Bacterial regulatory pr 27.6 95 0.0032 29.1 6.2 39 228-268 24-65 (239)
479 3s8q_A R-M controller protein; 27.6 40 0.0014 25.8 2.9 22 230-251 23-44 (82)
480 1z6r_A MLC protein; transcript 27.6 80 0.0027 32.1 6.0 31 228-258 27-57 (406)
481 3qq6_A HTH-type transcriptiona 27.5 40 0.0014 26.0 2.9 23 230-252 22-44 (78)
482 2wui_A MEXZ, transcriptional r 27.5 57 0.0019 29.1 4.4 27 228-254 27-54 (210)
483 3cdh_A Transcriptional regulat 27.5 73 0.0025 27.1 5.0 29 230-258 56-84 (155)
484 3npi_A TETR family regulatory 27.5 39 0.0013 31.2 3.4 48 214-262 21-69 (251)
485 1tbx_A ORF F-93, hypothetical 27.4 63 0.0022 25.7 4.3 29 230-258 21-53 (99)
486 1p4w_A RCSB; solution structur 27.4 62 0.0021 26.7 4.2 32 127-158 49-80 (99)
487 2h09_A Transcriptional regulat 27.4 71 0.0024 27.6 4.9 29 230-258 53-81 (155)
488 2fiy_A Protein FDHE homolog; F 27.3 26 0.00089 35.4 2.2 30 2-31 184-220 (309)
489 2eth_A Transcriptional regulat 27.3 75 0.0026 27.2 5.0 28 127-154 58-85 (154)
490 2l1p_A DNA-binding protein SAT 27.3 39 0.0013 27.7 2.8 21 231-251 32-52 (83)
491 3ni7_A Bacterial regulatory pr 27.2 54 0.0018 29.9 4.3 39 215-254 11-50 (213)
492 2nx4_A Transcriptional regulat 27.2 68 0.0023 28.2 4.8 38 216-254 15-53 (194)
493 4fx0_A Probable transcriptiona 27.2 1.2E+02 0.0041 26.2 6.4 29 230-258 51-79 (148)
494 3f6w_A XRE-family like protein 27.2 41 0.0014 25.7 3.0 21 231-251 27-47 (83)
495 1q1h_A TFE, transcription fact 27.1 85 0.0029 25.6 5.1 32 123-154 29-60 (110)
496 3bjb_A Probable transcriptiona 27.1 41 0.0014 30.1 3.4 41 216-257 27-68 (207)
497 2w53_A Repressor, SMet; antibi 27.0 48 0.0016 29.7 3.8 40 214-254 14-54 (219)
498 3jw4_A Transcriptional regulat 27.0 56 0.0019 27.7 4.1 28 230-257 56-83 (148)
499 2ef8_A C.ECOT38IS, putative tr 27.0 41 0.0014 25.6 2.9 22 230-251 22-43 (84)
500 3u2r_A Regulatory protein MARR 26.9 1.6E+02 0.0053 25.5 7.2 29 229-257 60-88 (168)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=1.5e-52 Score=435.84 Aligned_cols=268 Identities=15% Similarity=0.210 Sum_probs=132.6
Q ss_pred CCCCCCCC--CCeEEecCCCcEEcCCCceeec---------ccCcccCC------CCCCCCCCcEEee---------ccc
Q 047665 1 MPCTSCGS--KTLTREDISGSLICVSCGVVQA---------FDNYDAQL------YGRDGPTGIYVHV---------GTA 54 (530)
Q Consensus 1 M~Cp~CG~--~~iv~D~~~G~~VCt~CG~Vle---------~~~f~~~~------~~~g~p~gt~i~~---------g~~ 54 (530)
+.||+||+ +++++|+.+|++||++||+|++ |+.|+++. .+.|+|.+++++. +..
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e~~iD~g~EWR~f~~d~~~~~d~sRvG~~~~~~~~~~glsT~I~~~~~ 101 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEESCCBCHHHHHTTTSCSCSSSCCSSCCEEEECHHHHCSCCCCEEECCSS
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCCccCcccccCccccCCCcccccCCCcCCCCCCCCccccCCCcceeecCCCC
Confidence 47999997 6899999999999999999998 45665332 2346665444432 111
Q ss_pred CC---C---------CCcchHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHH
Q 047665 55 GT---G---------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122 (530)
Q Consensus 55 g~---g---------s~~s~rer~L~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR 122 (530)
+. + +..+++||+|..|++.|+++|.+|+||..++++|..+|+++.+.++++||+.+.++|||||+|||
T Consensus 102 ~~~~~~~~L~r~q~r~~~~~~er~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR 181 (345)
T 4bbr_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCR 181 (345)
T ss_dssp CCHHHHHHHHHHHHHTCCCCSSSSTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 11 1 12466789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc------------CCccchhhHHHHHHHhcccCCCCccchHHHHH
Q 047665 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLK------------LPEVDIVSMFERVIRNSRLQGFTNLDESMLDR 190 (530)
Q Consensus 123 ~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~------------~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~ 190 (530)
++++|+|++||++++++++++|+++|+.|.+.|++. +|+++|+.||+|||++|++ + ..
T Consensus 182 ~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l---~-------~~ 251 (345)
T 4bbr_M 182 RAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL---P-------MQ 251 (345)
T ss_dssp HTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC-----------------------------------------------
T ss_pred hcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCC---c-------HH
Confidence 999999999999999999999999999999999974 7889999999999999997 4 46
Q ss_pred HHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCCc
Q 047665 191 MRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGK 270 (530)
Q Consensus 191 V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~~ 270 (530)
+.+.|.+|++.+.+.|+++||+|.+|||||||+|++++|.++|+++||++++||++|||+||+||++++.+++++- |..
T Consensus 252 v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~~-~~~ 330 (345)
T 4bbr_M 252 VTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQ-LIA 330 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCHH-Hhh
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999652 654
Q ss_pred --cCccccccc
Q 047665 271 --DVTVKNVLK 279 (530)
Q Consensus 271 --~v~~knl~~ 279 (530)
.++.+++|+
T Consensus 331 ~~~~~~~~l~~ 341 (345)
T 4bbr_M 331 NGVVSLDNLPG 341 (345)
T ss_dssp -----------
T ss_pred cccCchhhCCC
Confidence 466777754
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-49 Score=409.47 Aligned_cols=268 Identities=15% Similarity=0.210 Sum_probs=131.3
Q ss_pred CCCCCCCCC--CeEEecCCCcEEcCCCceeeccc---------CcccCC------CCCCCCCCcEEeecc----cCCC--
Q 047665 1 MPCTSCGSK--TLTREDISGSLICVSCGVVQAFD---------NYDAQL------YGRDGPTGIYVHVGT----AGTG-- 57 (530)
Q Consensus 1 M~Cp~CG~~--~iv~D~~~G~~VCt~CG~Vle~~---------~f~~~~------~~~g~p~gt~i~~g~----~g~g-- 57 (530)
|.||+||+. ++++|+.+|++||++||+|++++ +|+++. .+.|+|.+++++.++ .|.+
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id~~~EwR~F~~~~~~~~~~srvG~~~~~~~~~~~l~T~I~~~~~ 101 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGET 101 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCCTTCCCCCC--------------CCCCCSSSCCCCCCCCCCTTS
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEcccccccCCccccccccccccCCCCCccCCCCCccccCCCCceeeccCCC
Confidence 689999995 79999999999999999999843 555321 234667666555321 1111
Q ss_pred ---------------CCcchHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHH
Q 047665 58 ---------------SALNYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMR 122 (530)
Q Consensus 58 ---------------s~~s~rer~L~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR 122 (530)
...+++||+|.+|++.|+.+|..|+||..++++|..+|+++.+.++++|++.+.++|||||+|||
T Consensus 102 ~~~~~~r~l~~~~~~~~~~~~er~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR 181 (345)
T 3k7a_M 102 TDMRFTKELNKAQGKNVMDKKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCR 181 (345)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSB
T ss_pred CCchhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHH
Confidence 02366789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhh------------hcCCccchhhHHHHHHHhcccCCCCccchHHHHH
Q 047665 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEFLN------------LKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDR 190 (530)
Q Consensus 123 ~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~------------i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~ 190 (530)
++++|+|++||+.++++++++|+++|+.|.+.|+ +.+|+++|..||+||++.|++ + ..
T Consensus 182 ~e~~prtl~ei~~~~~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l---~-------~~ 251 (345)
T 3k7a_M 182 RAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGL---P-------MQ 251 (345)
T ss_dssp TTBSSCCHHHHHHSSSCCSHHHHHHHHHHHHHHTCC--------------------------------------------
T ss_pred HcCCCccHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCC---C-------HH
Confidence 9999999999999999999999999999999999 788899999999999999997 4 46
Q ss_pred HHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCC-
Q 047665 191 MRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWG- 269 (530)
Q Consensus 191 V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~- 269 (530)
+.+.|..|++.+.+.|++.||+|.+|||||||+|++++|.++|+++|+++++||+.||++|||||++.+.+++++ .|.
T Consensus 252 v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~~~l~~~-~~~~ 330 (345)
T 3k7a_M 252 VTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDP-QLIA 330 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCH-HHhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999988865 254
Q ss_pred c-cCccccccc
Q 047665 270 K-DVTVKNVLK 279 (530)
Q Consensus 270 ~-~v~~knl~~ 279 (530)
+ .++..+||.
T Consensus 331 ~~~~~~~~lp~ 341 (345)
T 3k7a_M 331 NGVVSLDNLPG 341 (345)
T ss_dssp -----------
T ss_pred cccCCHhhCCC
Confidence 2 255666655
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=3e-37 Score=296.16 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=180.4
Q ss_pred chHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCC
Q 047665 61 NYKEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140 (530)
Q Consensus 61 s~rer~L~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd 140 (530)
+++||++.+|++.|.++|.+|+||+.+.++|..+|+++.+.++.+|++.+.++|||+|+|||+++.|++++||+.+++++
T Consensus 3 ~~~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~ 82 (200)
T 1ais_B 3 DAAERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82 (200)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSC
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCc--cchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHH
Q 047665 141 VYELGRMITRVVEFLNLKLPE--VDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVV 218 (530)
Q Consensus 141 ~~~Lgr~~k~L~k~L~i~~p~--vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAA 218 (530)
.++|+++|+.|.+.|++.+|+ ++|..||+||++.|++ + +.+.+.|..|++.+.+.|+..||+|.+|||
T Consensus 83 ~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l---~-------~~v~~~A~~i~~~~~~~~~~~gr~P~~iAa 152 (200)
T 1ais_B 83 KKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL---S-------EKVRRRAIEILDEAYKRGLTSGKSPAGLVA 152 (200)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC---C-------HHHHHHHHHHHHHHHHTTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHHcCcccCCCHHHHHH
Confidence 999999999999999999999 9999999999999997 4 468899999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
||||+|++++|.++|+++|++++||++.||+++|++|.+.|.
T Consensus 153 Aaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 153 AALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999886
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=4.9e-35 Score=282.39 Aligned_cols=205 Identities=16% Similarity=0.225 Sum_probs=192.7
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHH
Q 047665 63 KEKKIYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVY 142 (530)
Q Consensus 63 rer~L~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~ 142 (530)
+||++.+|++.|+++|.+|+||..++++|..+|+++...+..+|++.+.++|||+|+|||+++.|++++||+.+++++.+
T Consensus 1 ~er~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 1 SDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 80 (207)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHH
T ss_pred CchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHH
Q 047665 143 ELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLV 222 (530)
Q Consensus 143 ~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIY 222 (530)
+|+++|+.|.+.|+++++..+|..|+.|+++.|++ + +.+.+.|..+++.+.+.++..||+|.+|||||||
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l---~-------~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiy 150 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL---P-------KQVQMAATHIARKAVELDLVPGRSPISVAAAAIY 150 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCC---C-------HHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999997 4 4678899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCCc-cCccccccc
Q 047665 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGK-DVTVKNVLK 279 (530)
Q Consensus 223 lAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~~-~v~~knl~~ 279 (530)
+|++++|.++++++|+++++|++.||+++|++|.+.+..++++ |+. ..+.+++|.
T Consensus 151 lA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~--~~~~~~~~~~l~~ 206 (207)
T 1c9b_A 151 MASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPT--DFKFDTPVDKLPQ 206 (207)
T ss_dssp HHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCS--SCCCSSCSTTSCC
T ss_pred HHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChH--HHcccCCHhhCCC
Confidence 9999999999999999999999999999999999999988854 874 355666654
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.7e-20 Score=182.86 Aligned_cols=184 Identities=8% Similarity=0.058 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCC-CchhHHHHHHHHHHHHhcCCCCChHHHHHHh--------
Q 047665 67 IYESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG-DWFPILIGACSYVVMRLDDKSLPISEVASVL-------- 137 (530)
Q Consensus 67 L~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rG-R~~~~vaAAclYiACR~~~~P~TL~DIA~~~-------- 137 (530)
...+.+.|.+++.+|+||..+..+|..+|+++...+..++ +....+++||+|+|||.++.|++++||+.++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchh
Confidence 4568899999999999999999999999999987777777 9999999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHH
Q 047665 138 NCDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVV 217 (530)
Q Consensus 138 ~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIA 217 (530)
..+.++|.++.+.|.+.|+.++...+|..|+.++++.+++ + ..+.+.|..+++.+...++..|++|..||
T Consensus 108 ~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~---~-------~~~~~~A~~~l~~s~~~~~~l~~~Ps~IA 177 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII---N-------QKQLEFAWSIVNDSYASSLCLMAHPHQLA 177 (235)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS---C-------HHHHHHHHHHHHHHTTTTGGGTSCHHHHH
T ss_pred hccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHcCCchhccCHHHHH
Confidence 5789999999999999999999999999999999998875 4 35788999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 218 VAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 218 AAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
|||||+|+++.|.+.+ .+.+...++++.+|+.++++|.+....
T Consensus 178 aAai~lA~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 178 YAALLISCCNDENTIP-KLLDLIKSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp HHHHHHHHTSCTTHHH-HHHHHCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCC-CCcchhhcCCHHHHHHHHHHHHHHHhh
Confidence 9999999999886543 233444489999999999999886443
No 6
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.78 E-value=8.9e-18 Score=166.56 Aligned_cols=187 Identities=9% Similarity=0.031 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCC--------
Q 047665 68 YESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC-------- 139 (530)
Q Consensus 68 ~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~v-------- 139 (530)
..+.+.|.+++..|+||..+..+|..+|+++......+++....+++||+|+|||.++.|++++||+.+++.
T Consensus 42 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~ 121 (258)
T 2i53_A 42 REGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFG 121 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHG
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhh
Confidence 457799999999999999999999999999988877788899999999999999999999999999976431
Q ss_pred -----CHHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCch
Q 047665 140 -----DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPM 214 (530)
Q Consensus 140 -----d~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~ 214 (530)
...+|.++.+.|.+.|+.++....|..|+.++++.++. +. +....+...|..+++.+....+..+.+|.
T Consensus 122 ~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~---~~---~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps 195 (258)
T 2i53_A 122 QFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKG---DK---NKIQKLVQMAWTFVNDSLCTTLSLQWEPE 195 (258)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCS---CH---HHHHHHHHHHHHHHHHHTTTTGGGTSCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCC---Cc---chHHHHHHHHHHHHHHHHcCCchhccChH
Confidence 25789999999999999999889999999999999886 31 22347889999999999988899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH-------HHHH--hCCCHHHHHHHHHHHHHHHH
Q 047665 215 PVVVAVLVFVVELNGVSVKIEN-------VAKE--VHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~k~t~~e-------IA~~--~~VS~~TIrkRyKEL~e~L~ 260 (530)
.|||||||+|++++|.++++.+ .... .++++.+|+.++++|.+...
T Consensus 196 ~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 196 IIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998765432 2233 49999999999999887443
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.77 E-value=5.3e-17 Score=161.16 Aligned_cols=184 Identities=10% Similarity=0.090 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhC---------
Q 047665 68 YESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN--------- 138 (530)
Q Consensus 68 ~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~--------- 138 (530)
..+.+.|.+++.+|+||..+..+|..+|+++......++.....+++||+|+||+.++.|+++.||+.+++
T Consensus 32 ~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~ 111 (257)
T 2ivx_A 32 QQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPL 111 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCC
Confidence 35779999999999999999999999999999887778899999999999999999999999999987753
Q ss_pred --CC-------HHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHh-hcccc
Q 047665 139 --CD-------VYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAV-KWFLT 208 (530)
Q Consensus 139 --vd-------~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~-~~~l~ 208 (530)
+. ..+|.++.+.|.+.|+.++....|..|+.++++.++. + ..+...|..+++.+. ...+.
T Consensus 112 ~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~---~-------~~~~~~A~~~~~~sl~~~~~~ 181 (257)
T 2ivx_A 112 LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA---S-------KDLAQTSYFMATNSLHLTTFC 181 (257)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHHHHCCGG
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC---C-------cHHHHHHHHHHHhhhhcccHH
Confidence 11 6789999999999999999989999999999999885 3 357788999988776 46667
Q ss_pred cccCchhHHHHHHHHHHHHcCCCCCHH----HHHHH--hCCCHHHHHHHHHHHHHHHHh
Q 047665 209 TGRRPMPVVVAVLVFVVELNGVSVKIE----NVAKE--VHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 209 tGR~P~sIAAAAIYlAa~~~g~k~t~~----eIA~~--~~VS~~TIrkRyKEL~e~L~~ 261 (530)
.+..|..|||||||+|++++|.++++. .+... .++++.+|+.++++|.+...+
T Consensus 182 l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 182 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999876642 35554 378999999999999987654
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.75 E-value=5e-17 Score=162.97 Aligned_cols=185 Identities=10% Similarity=0.101 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC-CCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK-SLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~-P~TL~DIA~~~~--vd~~~Lg 145 (530)
...++|.+++..++++..+.-.|..+++++......+++....+++||+|+|||.++. |.++.|++..++ .+.++|.
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~ 119 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIR 119 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHH
Confidence 4678999999999999999999999999998877678889999999999999999887 899999999885 7899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++.+.|.+.|+.++....|..|+.++++.++. + ..+...|..+++.+.......|.+|..|||||||+|.
T Consensus 120 ~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~---~-------~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~ 189 (269)
T 2b9r_A 120 QMEMKILRALNFGLGRPLPLHFLRRASKIGEV---D-------VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLAL 189 (269)
T ss_dssp HHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCC---C-------HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCCCHHHHHHHHHHhcCC---C-------HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 99999999999998888999999999998875 3 3566789999999887777889999999999999999
Q ss_pred HHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 226 ELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 226 ~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
...|.+...+++...+|+++.+|+.++++|.+.+.+..
T Consensus 190 ~~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~ 227 (269)
T 2b9r_A 190 KILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVN 227 (269)
T ss_dssp HHHTCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTT
T ss_pred HHhCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 99998878889999999999999999999998876643
No 9
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.73 E-value=2.2e-16 Score=158.31 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC-CCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK-SLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~-P~TL~DIA~~~~--vd~~~Lg 145 (530)
.+.++|.+++..++++..+.-.|..+++++....-.+.++...+++||+|+|||.++. |+++.|++..++ .+.++|.
T Consensus 59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~ 138 (271)
T 2w96_A 59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELL 138 (271)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHH
Confidence 4668899999999999999999999999998766667778999999999999999988 999999998865 7899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++.+.|.+.|+.++..+.|..|+.+|++.++. +. +....+.+.|..+++.+.......+.+|..|||||||+|.
T Consensus 139 ~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~---~~---~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~ 212 (271)
T 2w96_A 139 QMELLLVNKLKWNLAAMTPHDFIEHFLSKMPE---AE---ENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAV 212 (271)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCC---CH---HHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC---Cc---hHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH
Confidence 99999999999999989999999999999986 31 2223345668888887765555578999999999999999
Q ss_pred HHcCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 226 ELNGV---------SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 226 ~~~g~---------k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
...+. ...++.++.++|+++.+|+.++++|.+.+..-.+
T Consensus 213 ~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 213 QGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 87653 1236789999999999999999999998766544
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.73 E-value=3.3e-16 Score=158.41 Aligned_cols=187 Identities=9% Similarity=0.021 Sum_probs=164.8
Q ss_pred hHHH-HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCC-ChHHHHHHhC---
Q 047665 64 EKKI-YESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSL-PISEVASVLN--- 138 (530)
Q Consensus 64 er~L-~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~-TL~DIA~~~~--- 138 (530)
++++ ..+.+.|.+++.+|+||..+..+|..+|+++...+..++.....+++||+|+||+.++.|+ ++.||..++.
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 3444 3467999999999999999999999999999887778899999999999999999999997 7889876542
Q ss_pred -------------CCHHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhc
Q 047665 139 -------------CDVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW 205 (530)
Q Consensus 139 -------------vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~ 205 (530)
....+|.++.+.|.+.|+.++....|..|+.++++.++. + ..+.+.|..+++.+...
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~---~-------~~~~~~A~~~l~~sl~t 188 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ---E-------DMLLPLAWRIVNDTYRT 188 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC---H-------HHHHHHHHHHHHHHTTS
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC---C-------HHHHHHHHHHHHHHHcc
Confidence 467899999999999999998888999999999999986 3 46888999999999888
Q ss_pred ccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 206 FLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 206 ~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
.+.-+..|..||+||||+|+++.+.+. .......+++...+...+++|.+.....
T Consensus 189 ~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~ly~~~ 243 (285)
T 3rgf_B 189 DLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKLYEQW 243 (285)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999988654 5788889999999999999988866553
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.72 E-value=2.5e-16 Score=156.94 Aligned_cols=184 Identities=11% Similarity=0.073 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC-CCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK-SLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~-P~TL~DIA~~~~--vd~~~Lg 145 (530)
.+.++|.+++..++++..+.-.|..+++++....-.+.+....+++||+|+|||.++. |.++.|++.+++ .+.++|.
T Consensus 41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~ 120 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVL 120 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHH
Confidence 4678999999999999999999999999997655556667899999999999999988 999999999874 7899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhccc-ccccCchhHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFL-TTGRRPMPVVVAVLVFV 224 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l-~tGR~P~sIAAAAIYlA 224 (530)
++.+.|.+.|+.++....|..|+.++++.++. +. ..+...|..+++.+..... ..|.+|..|||||||+|
T Consensus 121 ~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~---~~------~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA 191 (260)
T 2cch_B 121 RMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQP---AN------CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLA 191 (260)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSS---CC------HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC---Ch------HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999998888999999999999886 31 2567788888888653333 67999999999999999
Q ss_pred HHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 225 VELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 225 a~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
....+.+...++++..+|+++.+|+.++++|.+....
T Consensus 192 ~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~ 228 (260)
T 2cch_B 192 LYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLK 228 (260)
T ss_dssp HHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHhCcCHHHHHHHHHHHHHHHHh
Confidence 9998878888899999999999999999999997754
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.68 E-value=1.1e-16 Score=167.05 Aligned_cols=182 Identities=9% Similarity=0.072 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCC--------
Q 047665 68 YESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC-------- 139 (530)
Q Consensus 68 ~~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~v-------- 139 (530)
..+.++|.+++..|+||..+..+|..||+++......++.....+++||+|+||+.+..|+++.||+.++..
T Consensus 39 ~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~ 118 (358)
T 2pk2_A 39 QQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESL 118 (358)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccc
Confidence 347799999999999999999999999999998877788899999999999999999999999999876521
Q ss_pred ----------CHHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHh-hcccc
Q 047665 140 ----------DVYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAV-KWFLT 208 (530)
Q Consensus 140 ----------d~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~-~~~l~ 208 (530)
...+|.++.+.|.+.|+.++....|..||.+|++.++. + ..+...|..+++.+. ...+.
T Consensus 119 ~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~---~-------~~l~~~A~~ll~~sl~~t~l~ 188 (358)
T 2pk2_A 119 PDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA---S-------KDLAQTSYFMATNSLHLTTFS 188 (358)
T ss_dssp CCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHTTTSCGG
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHhcCcch
Confidence 25678899999999999999889999999999999875 3 357788999998876 45566
Q ss_pred cccCchhHHHHHHHHHHHHcCCCCCHH----HHHHH--hCCCHHHHHHHHHHHHHHH
Q 047665 209 TGRRPMPVVVAVLVFVVELNGVSVKIE----NVAKE--VHCTVVTCRKRYKELLEAL 259 (530)
Q Consensus 209 tGR~P~sIAAAAIYlAa~~~g~k~t~~----eIA~~--~~VS~~TIrkRyKEL~e~L 259 (530)
.+..|..|||||||+|+++++.++++. .+... +++++.+|+.++++|.+.+
T Consensus 189 l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 189 LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp GTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999776643 35555 4789999999999998755
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.66 E-value=1.2e-14 Score=144.31 Aligned_cols=188 Identities=12% Similarity=0.081 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcC-CCCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDD-KSLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~-~P~TL~DIA~~~~--vd~~~Lg 145 (530)
...++|-+++..++++..+.-.|..+++++......++.....+++||+|+||+.+. .|.++.|++..++ .+..+|.
T Consensus 54 ~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~ 133 (254)
T 2f2c_A 54 ILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELI 133 (254)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHH
Confidence 466899999999999999999999999999887777888899999999999999966 6999999988764 6899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++.+.|.+.|+.++..+.|..|+.+|++.++. +. +....+...|..+++.+.......+.+|..|||||+|+|.
T Consensus 134 ~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~---~~---~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~ 207 (254)
T 2f2c_A 134 NQEKDILEALKWDTEAVLATDFLIPLCNALKI---PE---DLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTI 207 (254)
T ss_dssp HHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTC---CG---GGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC---Ch---hhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHH
Confidence 99999999999998888999999999999886 32 1223456678888887766666689999999999999999
Q ss_pred HHcC-CCCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 226 ELNG-VSVK----IENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 226 ~~~g-~k~t----~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
+..+ .+.+ +.+++..+|+++.+++.+++.|.+.+.+.
T Consensus 208 ~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~ 249 (254)
T 2f2c_A 208 ETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLY 249 (254)
T ss_dssp HTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhC
Confidence 9863 4455 78999999999999999999999887654
No 14
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.65 E-value=7e-15 Score=146.21 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC-CCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK-SLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~-P~TL~DIA~~~~--vd~~~Lg 145 (530)
...++|-+++..++++..+.-.|..+++++......+++....+++||+|+||+.+.. |.++.|++..++ .+..+|.
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~ 132 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELI 132 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHH
Confidence 4668999999999999999999999999998877677778999999999999998765 999999998865 7899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++.+.|.+.|+.++..+.|..|+.+|++.++. +. +....+...|..+++.+.......+.+|..|||||||+|.
T Consensus 133 ~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~---~~---~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~ 206 (257)
T 1g3n_C 133 DQEKELLEKLAWRTEAVLATDVTSFLLLKLVG---GS---QHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLV 206 (257)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSC---SS---TTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC---Ch---hHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHH
Confidence 99999999999998888999999999999986 32 1123456678888888766666789999999999999999
Q ss_pred HHcCC------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 226 ELNGV------SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 226 ~~~g~------k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
...+. +...+.++..+|+++.+++.++++|.+.+.+.
T Consensus 207 ~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~ 249 (257)
T 1g3n_C 207 PANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDF 249 (257)
T ss_dssp CGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHC
Confidence 88874 23467899999999999999999999987664
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.61 E-value=4.2e-14 Score=145.50 Aligned_cols=189 Identities=11% Similarity=0.077 Sum_probs=152.3
Q ss_pred hHHHH-HHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCC
Q 047665 64 EKKIY-ESNKLIDELTFKLD--LTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCD 140 (530)
Q Consensus 64 er~L~-~a~~~I~~i~~~Lg--Lp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd 140 (530)
|+.+. .+.+.|.++|..|+ ||..+..+|..+|+++...+..++.....+++||+|+||+.++.|+++.||+..+..+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 45554 45699999999999 9999999999999999988777888999999999999999999999999999877666
Q ss_pred -------HHHHHHHHHHHHHHhhhcCCccchhhHHHHHHHhccc--CCCCccchHHHHHHHHHHHHHHHHHhhccccccc
Q 047665 141 -------VYELGRMITRVVEFLNLKLPEVDIVSMFERVIRNSRL--QGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGR 211 (530)
Q Consensus 141 -------~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l--~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR 211 (530)
..+|.++.+.|.+.|+.++....|..|+.+|+..+.- .+++. ...+...|..+++.+....+.-+.
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~-----~~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN-----PEILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC-----HHHHHHHHHHHHHHHTTSTHHHHS
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHhccHHHcC
Confidence 5789999999999999999888999999999877621 01121 246778899999998888888899
Q ss_pred CchhHHHHHHHHHHHHcCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHH
Q 047665 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVH-----CTVVTCRKRYKELLEA 258 (530)
Q Consensus 212 ~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~-----VS~~TIrkRyKEL~e~ 258 (530)
.|..|||||||+|+...|.+++. =+....+ .+..-+...+++|...
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~~~~-w~~~l~~~~~~~~~~~~l~~~~~~i~~l 258 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGITMES-YLSESLMLKENRTCLSQLLDIMKSMRNL 258 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCTT-HHHHHTTSCSSSCCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCChHH-HHHHHhccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999877652 1222223 3444555555555443
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.57 E-value=9.7e-14 Score=140.16 Aligned_cols=187 Identities=13% Similarity=0.065 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhC-CCCCCCchhHHHHHHHHHHHHhcCC-CCChHHHHHHhC--CCHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDG-EFGLGDWFPILIGACSYVVMRLDDK-SLPISEVASVLN--CDVYEL 144 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~-~l~rGR~~~~vaAAclYiACR~~~~-P~TL~DIA~~~~--vd~~~L 144 (530)
...++|.+++..++++....-.|..+++++... ...+++....+++||+|+|||.++. |.++.|++.+++ .+..+|
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei 131 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEI 131 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHH
Confidence 466889999999999999999999999999865 4567888999999999999999876 899999998874 789999
Q ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCcc-chHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHH
Q 047665 145 GRMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNL-DESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVF 223 (530)
Q Consensus 145 gr~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v-~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYl 223 (530)
.++.+.|.+.|+.++..+.|..|+.+|++.+++...... ...........+..+++.+....-..+.+|..|||||||+
T Consensus 132 ~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~l 211 (283)
T 1w98_B 132 LTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYH 211 (283)
T ss_dssp HHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHH
Confidence 999999999999999889999999999998765211100 0000012223455677766544446789999999999999
Q ss_pred HHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 224 Aa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|. .++.+...+|+++.+|+.++++|.+....+
T Consensus 212 a~-------~~~~l~~~tg~~~~~i~~c~~~l~~~~~~~ 243 (283)
T 1w98_B 212 FS-------SSELMQKVSGYQWCDIENCVKWMVPFAMVI 243 (283)
T ss_dssp TS-------CHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HH-------ChHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 85 378899999999999999999998876655
No 17
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.55 E-value=3.7e-13 Score=137.52 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHh-cCCCCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRL-DDKSLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~-~~~P~TL~DIA~~~~--vd~~~Lg 145 (530)
.+.++|.+++..++|+..+.-.|..+++++......+......+++||+|+||+. +..|.++.+++..++ .+..+|.
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~ 152 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLR 152 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHH
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHH
Confidence 5678999999999999999999999999998766667778999999999999998 456889999998876 6899999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++-+.|.+.|+.++....|..|+.+|+..++. +. +....+.+.|..+++.+.......+..|..|||||||+|.
T Consensus 153 ~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~---~~---~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~ 226 (306)
T 3g33_B 153 DWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL---PR---DRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAV 226 (306)
T ss_dssp HHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC---CT---TTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC---Ch---hHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHH
Confidence 99999999999998888999999999999876 21 1233456678888887766666778999999999999999
Q ss_pred HHcCCCCCH-----HHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 226 ELNGVSVKI-----ENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 226 ~~~g~k~t~-----~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...+.+... ..++..+|+++.+++.+++.|.+.+.+-.++
T Consensus 227 ~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~ 271 (306)
T 3g33_B 227 QGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 271 (306)
T ss_dssp HTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC---
T ss_pred HHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998854332 5788999999999999999999988875544
No 18
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.30 E-value=1e-11 Score=118.52 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
...+|.++|..|++|+.+.+.|..+++.+.+.++..|+++..++|||||+|||.+|.|+|+.||+.+++++..+|++.|+
T Consensus 108 p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~ 187 (200)
T 1ais_B 108 PTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 187 (200)
T ss_dssp GGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34689999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCc
Q 047665 150 RVVEFLNLKLPE 161 (530)
Q Consensus 150 ~L~k~L~i~~p~ 161 (530)
.|.+.|++++|+
T Consensus 188 ~l~~~l~~~~~~ 199 (200)
T 1ais_B 188 ELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHTCCCCC
T ss_pred HHHHHcCCCCCC
Confidence 999999998765
No 19
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.08 E-value=4.8e-10 Score=107.53 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
.+..|.+++..|++|+.+.+.|..+++.+.+..+..|+++..+||||+|+|||.+|.|++..||+.+++++..+|++.|+
T Consensus 102 p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~ 181 (207)
T 1c9b_A 102 TGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR 181 (207)
T ss_dssp THHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45789999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCc
Q 047665 150 RVVEFLNLKLPE 161 (530)
Q Consensus 150 ~L~k~L~i~~p~ 161 (530)
.|.+.++..+|.
T Consensus 182 ~l~~~l~~~~p~ 193 (207)
T 1c9b_A 182 LIYPRAPDLFPT 193 (207)
T ss_dssp HHGGGHHHHSCS
T ss_pred HHHHHHHHhChH
Confidence 999999987653
No 20
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.95 E-value=8.2e-08 Score=95.45 Aligned_cols=187 Identities=9% Similarity=-0.004 Sum_probs=146.5
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcC-CCCChHHHHHHhC--CCHHHHH
Q 047665 69 ESNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDD-KSLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 69 ~a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~-~P~TL~DIA~~~~--vd~~~Lg 145 (530)
...++|-+++..++++..+.-.|..++.+.....-.+......++++|+++|++.+. .|.++.+++..++ .+..+|.
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~ 130 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLL 130 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHH
Confidence 456899999999999999999999999999765545555789999999999999755 5899999998865 6789999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHH
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVV 225 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa 225 (530)
++-+.|.+.|+.++..+.|..|+.++...++. +. +....+...|..+++.+.-..-...-+|+-|||||+.++.
T Consensus 131 ~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~---~~---~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l 204 (252)
T 1f5q_B 131 TLEVKSLDTLSWVADRCLSTDLICYILHIMHA---PR---EDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 204 (252)
T ss_dssp HHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC---CH---HHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC---Cc---chHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHh
Confidence 99999999999998888999999999998875 31 2223456667777777654333457889999999954432
Q ss_pred HHcCCCCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 226 ELNGVSVK----IENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 226 ~~~g~k~t----~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.+...+ ...++..+|++...++..++.|.+.+...-
T Consensus 205 --~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~ 244 (252)
T 1f5q_B 205 --NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFD 244 (252)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred --ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhC
Confidence 222222 345788899999999999988888875543
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.62 E-value=3.8e-09 Score=109.61 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
...+|.++|+.|+|+..+...|..|++.+.+.++..||++..+||||||+||+.++.++|.+|||++++++..+|...|+
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ryk 314 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 33578999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCccchhhHHHHH
Q 047665 150 RVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 150 ~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
.|...++.-+| ..|+...
T Consensus 315 el~~~~~~l~~----~~~~~~~ 332 (345)
T 4bbr_M 315 ILYEHRDKLVD----PQLIANG 332 (345)
T ss_dssp ----------------------
T ss_pred HHHHHHHhhcC----HHHhhcc
Confidence 99999886443 3455544
No 22
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=98.55 E-value=3.7e-08 Score=76.68 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=32.3
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCceeecccCccc
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA 36 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~ 36 (530)
|.||+||+..+++|+..|++||..||+|++++.++.
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~iD~ 47 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEecccccc
Confidence 579999997899999999999999999999776553
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.1e-08 Score=102.70 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHH
Q 047665 71 NKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITR 150 (530)
Q Consensus 71 ~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~ 150 (530)
..+|.++|..|+|+..+...|..+.+.+.+..+..||++..+||||||+||+.++.++|.++|+.+++++..+|...|+.
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~yke 315 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKI 315 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35677899999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 047665 151 VVEFLN 156 (530)
Q Consensus 151 L~k~L~ 156 (530)
|.+...
T Consensus 316 l~~~~~ 321 (345)
T 3k7a_M 316 LYEHRD 321 (345)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 998875
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.2e-07 Score=86.72 Aligned_cols=32 Identities=22% Similarity=0.640 Sum_probs=28.8
Q ss_pred CCCCCCCC--CCeEEecCCCcEEcCCCceeeccc
Q 047665 1 MPCTSCGS--KTLTREDISGSLICVSCGVVQAFD 32 (530)
Q Consensus 1 M~Cp~CG~--~~iv~D~~~G~~VCt~CG~Vle~~ 32 (530)
+.||+||+ +++++|+.+|++||.+||+|+++.
T Consensus 22 ~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEr 55 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCC
T ss_pred eECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCc
Confidence 47999998 579999999999999999999843
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=98.23 E-value=1.2e-06 Score=65.78 Aligned_cols=35 Identities=29% Similarity=0.626 Sum_probs=32.0
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA 36 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~ 36 (530)
.||.||+..+++|+..|++||..||+|+++..++.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~id~ 41 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGYVIEENIIDM 41 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCCccccccccc
Confidence 79999998899999999999999999999877663
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=97.55 E-value=0.0017 Score=62.12 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCC---CchhHHHHHHHHHHHHhcCCCCChHHHHHHh-CCCHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG---DWFPILIGACSYVVMRLDDKSLPISEVASVL-NCDVYELG 145 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rG---R~~~~vaAAclYiACR~~~~P~TL~DIA~~~-~vd~~~Lg 145 (530)
+.+.|+.+..+-++|+.+...|.++.+.+..+.--+| .+...++|||+.+|..+.+.|+++.|+-..- .+..-++.
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvelr 94 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVELR 94 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHHH
Confidence 6678899999999999999999999998864322233 3688999999999999999999999997652 22333333
Q ss_pred HHHHHHHHHhhhcCCccc-----hhhHHHHHHHhccc
Q 047665 146 RMITRVVEFLNLKLPEVD-----IVSMFERVIRNSRL 177 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vd-----p~~~I~R~~~~L~l 177 (530)
-..|++.+++....-. ..+++..|+.+|++
T Consensus 95 --r~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~L 129 (260)
T 3h4c_A 95 --RADIVRELHLEDSERRLRDTFADNLLVKYILKLGL 129 (260)
T ss_dssp --HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 3477777776421111 12455667777776
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=96.87 E-value=0.0057 Score=59.30 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred hhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccc-cCchhHHHHHHHHHHHHcCCCCCHHHHHHHh--
Q 047665 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTG-RRPMPVVVAVLVFVVELNGVSVKIENVAKEV-- 241 (530)
Q Consensus 165 ~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tG-R~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~-- 241 (530)
.++|.+++..|++ + ..+...|..++++.-....+.+ ++|..+++||+|+|++..+..+++++|+.++
T Consensus 32 ~~~i~~v~~~l~L---~-------~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~ 101 (235)
T 1zp2_A 32 WKVVQTFGDRLRL---R-------QRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEAND 101 (235)
T ss_dssp HHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 3578889999997 4 4677888888888766556677 9999999999999999999999999999876
Q ss_pred ------CCCHHHHHHHHHHHHH
Q 047665 242 ------HCTVVTCRKRYKELLE 257 (530)
Q Consensus 242 ------~VS~~TIrkRyKEL~e 257 (530)
..+...|....+.|.+
T Consensus 102 ~~~~~~~~~~~~I~~~E~~iL~ 123 (235)
T 1zp2_A 102 LWSLKVKLSRSNISEIEFEIIS 123 (235)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHH
T ss_pred HccchhhccHHHHHHHHHHHHH
Confidence 3555555544444433
No 28
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=96.55 E-value=0.0077 Score=51.12 Aligned_cols=80 Identities=6% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCC------CchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHH
Q 047665 74 IDELTFKLDLTGQRSIQIKNMIDKITDGEFGLG------DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRM 147 (530)
Q Consensus 74 I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rG------R~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~ 147 (530)
|+++|-+||.+. +++.|.+++..+... +..+ -+.+..+||++|.+||.++..++-.-+.+..++.+.++.+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~-l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l 83 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESS-LPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRL 83 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTT-SCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHH-hHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHH
Confidence 789999999998 788888887777532 2211 24678899999999999999999999999999999999888
Q ss_pred HHHHHHHh
Q 047665 148 ITRVVEFL 155 (530)
Q Consensus 148 ~k~L~k~L 155 (530)
...+.+..
T Consensus 84 ~~~~e~~~ 91 (95)
T 3m03_A 84 CKQLEKIG 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=96.52 E-value=0.0079 Score=59.26 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHh-hCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHH
Q 047665 70 SNKLIDELTFKLDLTG-QRSIQIKNMIDKIT-DGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRM 147 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~-~i~e~A~~i~k~a~-~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~ 147 (530)
.+.+|..++..+++++ .+...|..+...+. +....-+..+..+||||+|+|++..+.|....+++..+|++..+|..+
T Consensus 139 p~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~ 218 (260)
T 2cch_B 139 VNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPC 218 (260)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHH
Confidence 4578999999999987 67777877777654 333245678999999999999999888888899999999999999999
Q ss_pred HHHHHHHhhh
Q 047665 148 ITRVVEFLNL 157 (530)
Q Consensus 148 ~k~L~k~L~i 157 (530)
++.|.+.+..
T Consensus 219 ~~~l~~~~~~ 228 (260)
T 2cch_B 219 LMDLHQTYLK 228 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.47 E-value=0.0055 Score=60.83 Aligned_cols=87 Identities=5% Similarity=-0.081 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
.+.+|..++..++++..+...|..+...+......-+..+..+||||+|+|++..+.+....+++..+|++..+|..+++
T Consensus 138 p~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~ 217 (269)
T 2b9r_A 138 PLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQ 217 (269)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 45688899999999988888888888877644444677899999999999999998887888899999999999999999
Q ss_pred HHHHHhh
Q 047665 150 RVVEFLN 156 (530)
Q Consensus 150 ~L~k~L~ 156 (530)
.|.+.+.
T Consensus 218 ~l~~~~~ 224 (269)
T 2b9r_A 218 HLAKNVV 224 (269)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 31
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=96.16 E-value=0.013 Score=57.32 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCCCH----HHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHH-------HH--
Q 047665 70 SNKLIDELTFKLDLTG----QRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVA-------SV-- 136 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~----~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA-------~~-- 136 (530)
.+.+|..++..|+.+. .+...|..+...+......-+..+..+||||+|+|++..+.+++..+.. ..
T Consensus 151 P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~ 230 (258)
T 2i53_A 151 PYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFV 230 (258)
T ss_dssp HHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTS
T ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhc
Confidence 3567889999999987 5777888888777655555678899999999999999998865543321 33
Q ss_pred hCCCHHHHHHHHHHHHHHhhh
Q 047665 137 LNCDVYELGRMITRVVEFLNL 157 (530)
Q Consensus 137 ~~vd~~~Lgr~~k~L~k~L~i 157 (530)
.+++..+|...++.|.+.+..
T Consensus 231 ~~~~~~~l~~~~~~il~ly~~ 251 (258)
T 2i53_A 231 QDVPVDVLEDICHQILDLYSQ 251 (258)
T ss_dssp SSCCHHHHHHHHHHHHTTTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 389999999999999887654
No 32
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.10 E-value=0.012 Score=58.82 Aligned_cols=104 Identities=9% Similarity=0.026 Sum_probs=79.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHH
Q 047665 71 NKLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITR 150 (530)
Q Consensus 71 ~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~ 150 (530)
++.|..++..|+++..+...|..+..........-+..+..+||||||+|++..+.+. ..-...++++..+|..+++.
T Consensus 158 ~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~ 235 (285)
T 3rgf_B 158 YRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRV 235 (285)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHH
Confidence 4578889999999888999999998887654444567899999999999999988754 56777899999999999999
Q ss_pred HHHHhhhcCCccchhhHHHHHHHhccc
Q 047665 151 VVEFLNLKLPEVDIVSMFERVIRNSRL 177 (530)
Q Consensus 151 L~k~L~i~~p~vdp~~~I~R~~~~L~l 177 (530)
|.+..... +..+...=++.+.+++.-
T Consensus 236 il~ly~~~-~~~~~~~~~~~~~~k~~~ 261 (285)
T 3rgf_B 236 ILKLYEQW-KNFDERKEMATILSKMPK 261 (285)
T ss_dssp HHHHHHHH-HHCCHHHHHHHHHHHSCC
T ss_pred HHHHHHhc-ccCchhhhHHHHHHhCCC
Confidence 98877642 112333345666666544
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.08 E-value=0.016 Score=57.48 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCCCHHHH----HHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC---------CCChHHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRS----IQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK---------SLPISEVASV 136 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~----e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~---------P~TL~DIA~~ 136 (530)
.+.+|..++..++++.... ..|..++..+......-+..+..+||||+|+|++..+. +.+..+++.+
T Consensus 157 p~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~ 236 (271)
T 2w96_A 157 PHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRV 236 (271)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHH
Confidence 4568889999999987543 35666665543222124568899999999999987653 1245789999
Q ss_pred hCCCHHHHHHHHHHHHHHhhhcCC
Q 047665 137 LNCDVYELGRMITRVVEFLNLKLP 160 (530)
Q Consensus 137 ~~vd~~~Lgr~~k~L~k~L~i~~p 160 (530)
+|++..+|..+++.|.+.++....
T Consensus 237 ~~v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 237 IKCDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp HTSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987644
No 34
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.07 E-value=0.04 Score=53.88 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=57.8
Q ss_pred hhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 047665 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEV 241 (530)
Q Consensus 165 ~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~ 241 (530)
.++|.+++..+++ + ..+...|..++++.-....+.+++|.-+++||+|+|++..+...++.+|+.++
T Consensus 35 ~~~i~~v~~~l~l---~-------~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 35 ANLIQEMGQRLNV---S-------QLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHTTC---C-------HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC---c-------HHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 3578888999997 4 46788899999987776678899999999999999999999999999998775
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.94 E-value=0.057 Score=55.05 Aligned_cols=93 Identities=8% Similarity=0.073 Sum_probs=68.1
Q ss_pred hHHHHHHHhcc--cCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Q 047665 166 SMFERVIRNSR--LQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHC 243 (530)
Q Consensus 166 ~~I~R~~~~L~--l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~V 243 (530)
.+|..++..++ + + ..+...|..++++.-....+.+.+|..|++||+|+|++..+..+++.+|+..+..
T Consensus 62 ~~I~ev~~~l~~~L---p-------~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~ 131 (323)
T 1jkw_A 62 KRLLEFCSVFKPAM---P-------RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRE 131 (323)
T ss_dssp HHHHHHHHHCTTTC---C-------HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSS
T ss_pred HHHHHHHHHHcCCC---C-------HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcc
Confidence 45777888888 6 4 4677889999998777777889999999999999999999999999999987765
Q ss_pred CHHHHHHHHHHHHHHHHhhcccCCC
Q 047665 244 TVVTCRKRYKELLEALVKVAQALPW 268 (530)
Q Consensus 244 S~~TIrkRyKEL~e~L~~l~~~lpW 268 (530)
.+......-++|.+.=..+.+.+-|
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f 156 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNF 156 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCC
Confidence 5322111223444443444455556
No 36
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=95.43 E-value=0.054 Score=53.02 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCCHHH----HHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhc-CCCCC----hHHHHHHhCCCHH
Q 047665 72 KLIDELTFKLDLTGQR----SIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLD-DKSLP----ISEVASVLNCDVY 142 (530)
Q Consensus 72 ~~I~~i~~~LgLp~~i----~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~-~~P~T----L~DIA~~~~vd~~ 142 (530)
.++..++..++++... ...|..+.....-....-+.++..+||||+|+|.+.. +.|.+ ..+++..+|++..
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~ 233 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTN 233 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHH
Confidence 4688888889888753 3446555554432222356688999999999999885 44566 7899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 047665 143 ELGRMITRVVEFLN 156 (530)
Q Consensus 143 ~Lgr~~k~L~k~L~ 156 (530)
+|..+++.|.+.+.
T Consensus 234 ~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 234 TVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=95.05 E-value=0.042 Score=56.95 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=57.2
Q ss_pred hhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 047665 165 VSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEV 241 (530)
Q Consensus 165 ~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~ 241 (530)
.++|.+++..|++ + ..+...|..++++.-....+.+++|.-+++||+|+|++..+..+++.+|+.++
T Consensus 42 v~wI~ev~~~l~L---~-------~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 42 ANLLQDMGQRLNV---S-------QLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHTTTTC---C-------HHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 4578888888887 4 46788899999987776677899999999999999999999989999998665
No 38
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=95.00 E-value=0.054 Score=53.10 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhcCCCHHH----HHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCC------CCChHHHHHHhCC
Q 047665 70 SNKLIDELTFKLDLTGQR----SIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDK------SLPISEVASVLNC 139 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i----~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~------P~TL~DIA~~~~v 139 (530)
.+.+|..++..++++... ...|..+.....-....-+..+..+||||+|+|++..+. +....+++..+|+
T Consensus 151 p~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~ 230 (257)
T 1g3n_C 151 ATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGC 230 (257)
T ss_dssp HHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCc
Confidence 456888888888887643 344666655443222234568899999999999988875 3557889999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 047665 140 DVYELGRMITRVVEFLN 156 (530)
Q Consensus 140 d~~~Lgr~~k~L~k~L~ 156 (530)
+..+|..+++.|.+.+.
T Consensus 231 ~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 231 DVSVLQAAVEQILTSVS 247 (257)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988775
No 39
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=94.98 E-value=0.048 Score=57.56 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHHH-HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHhh--CCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCC
Q 047665 65 KKIYE-SNKLIDELTFKLDLTG-QRSIQIKNMIDKITD--GEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNC 139 (530)
Q Consensus 65 r~L~~-a~~~I~~i~~~LgLp~-~i~e~A~~i~k~a~~--~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~v 139 (530)
|++++ |..+|+.+|.+|+++. .+.+....+|..... -.+.++|-.+.++-+|+|+.||..+..++++||-....-
T Consensus 276 rKvy~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~ 354 (411)
T 4ell_A 276 KKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 354 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Confidence 34444 7789999999999875 678888888887753 367799999999999999999999999999999886443
No 40
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=94.28 E-value=0.028 Score=46.52 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDA 36 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~ 36 (530)
.||.||. ..+.+...|.+.|..||.+..-+.+..
T Consensus 29 ~Cp~CG~-~~v~r~atGiW~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 29 ACPNCGE-DRVDRQGTGIWQCSYCDYKFTGGSYKP 62 (83)
T ss_dssp ECSSSCC-EEEEEEETTEEEETTTCCEEECCSSSS
T ss_pred cCCCCCC-cceeccCCCeEECCCCCCEecCCEecc
Confidence 5999998 468999999999999999998776664
No 41
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=94.27 E-value=0.02 Score=45.24 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=28.3
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~ 31 (530)
+||.|+..+++++..+-.+.|..||.++-.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEee
Confidence 699999999999999999999999999974
No 42
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=94.19 E-value=0.036 Score=44.41 Aligned_cols=29 Identities=17% Similarity=0.463 Sum_probs=25.3
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
+.||.|+++ +..+...|.++|.+||....
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 9 LVCPVCKGR-LEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CBCTTTCCB-EEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CEEeCCCCEEEcCCCCceec
Confidence 379999994 77888899999999999876
No 43
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=94.18 E-value=0.033 Score=44.54 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
+.||.|+++ +..+...|.++|.+||....
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 9 LACPICKGP-LKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp CCCTTTCCC-CEECTTSSEEEETTTTEEEE
T ss_pred eeCCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 479999985 67787889999999999876
No 44
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=94.17 E-value=0.032 Score=44.46 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.1
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
+.||.|+++ +..+...|.++|.+||....
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 9 LVCPLCKGP-LVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp CBCTTTCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 379999985 67788899999999999876
No 45
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.09 E-value=0.019 Score=45.01 Aligned_cols=30 Identities=20% Similarity=0.583 Sum_probs=28.3
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~ 31 (530)
.||.|+..++++++.+-.+.|..||.++-.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVE 46 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEec
Confidence 699999999999999999999999999974
No 46
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=94.02 E-value=0.035 Score=44.26 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
+.||.|+++ +..+...|.++|.+||....
T Consensus 9 L~CP~ck~~-L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 9 LVCPVTKGR-LEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CBCSSSCCB-CEEETTTTEEEETTTTEEEE
T ss_pred eECCCCCCc-CeEeCCCCEEEcCCCCcEec
Confidence 379999985 67888889999999999876
No 47
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=93.78 E-value=0.042 Score=43.66 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.9
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.||.|+++ +..+...|.++|.+||....
T Consensus 12 ~CP~ck~~-L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 12 ACPKDKGP-LRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp BCTTTCCB-CEEETTTTEEEETTTTEEEE
T ss_pred CCCCCCCc-CeEeCCCCEEEcCCCCcccc
Confidence 69999995 77888899999999999876
No 48
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=93.74 E-value=0.12 Score=57.38 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHH-HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHhh--CCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHh
Q 047665 65 KKIYE-SNKLIDELTFKLDLTG-QRSIQIKNMIDKITD--GEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVL 137 (530)
Q Consensus 65 r~L~~-a~~~I~~i~~~LgLp~-~i~e~A~~i~k~a~~--~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~ 137 (530)
|++++ |..+|..+|..|+++. .+.+.+..+|..+.. ..+.++|-...++-+|+|..||..+..+++++|-...
T Consensus 521 rKvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Y 597 (656)
T 4elj_A 521 KKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAY 597 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHH
Confidence 34444 7899999999998774 688889888887753 3577999999999999999999999999999998754
No 49
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=93.67 E-value=0.2 Score=50.90 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhC-C---CCCCCchhHHHHHHHHHHHHh-cCCCCChHHHHHHhCCCHHHHHH
Q 047665 73 LIDELTFKLDLTGQRSIQIKNMIDKITDG-E---FGLGDWFPILIGACSYVVMRL-DDKSLPISEVASVLNCDVYELGR 146 (530)
Q Consensus 73 ~I~~i~~~LgLp~~i~e~A~~i~k~a~~~-~---l~rGR~~~~vaAAclYiACR~-~~~P~TL~DIA~~~~vd~~~Lgr 146 (530)
.-..+|..|+|++.+.++|..+|+.+... + ...|. .+....||+|+||.. ++.++|+-.|-..++++..++-+
T Consensus 5 rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~ 82 (304)
T 2qdj_A 5 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFN 82 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHH
Confidence 45688999999999999999999998763 2 23443 445556669999975 67789999999999999888733
No 50
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=93.63 E-value=0.15 Score=52.71 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=61.3
Q ss_pred HHHH-HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHhh--CCCCCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhC
Q 047665 66 KIYE-SNKLIDELTFKLDLTG-QRSIQIKNMIDKITD--GEFGLGDWFPILIGACSYVVMRLDDKSLPISEVASVLN 138 (530)
Q Consensus 66 ~L~~-a~~~I~~i~~~LgLp~-~i~e~A~~i~k~a~~--~~l~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~ 138 (530)
++++ |..+|+.+|..|+++. .+.+.+..+|..+.. -.+.++|-.+.++-+|+|+.||.++..+|+++|-....
T Consensus 213 Kvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr 289 (347)
T 2r7g_A 213 KVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 289 (347)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4443 7789999999999876 578888888887753 35779999999999999999999999999999988643
No 51
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=93.22 E-value=0.034 Score=45.59 Aligned_cols=30 Identities=17% Similarity=0.566 Sum_probs=28.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~ 31 (530)
.||.|+..++|+++.+-.+.|..||+|+-.
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 699999999999999999999999999974
No 52
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.07 E-value=0.31 Score=49.18 Aligned_cols=87 Identities=7% Similarity=-0.041 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCCHH----HHHHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHHhcCCC-CC----hHHHHHHhCCCHH
Q 047665 72 KLIDELTFKLDLTGQ----RSIQIKNMIDKITDGEFGLGDWFPILIGACSYVVMRLDDKS-LP----ISEVASVLNCDVY 142 (530)
Q Consensus 72 ~~I~~i~~~LgLp~~----i~e~A~~i~k~a~~~~l~rGR~~~~vaAAclYiACR~~~~P-~T----L~DIA~~~~vd~~ 142 (530)
.+|..+...++++.. +...|..+.....-....-+..+..+||||+|+|++..+.. .. ...++..+|++..
T Consensus 173 ~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~ 252 (306)
T 3g33_B 173 DFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVD 252 (306)
T ss_dssp GGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHH
Confidence 468888888887753 34556555554432222345678999999999999987643 22 3677888999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 047665 143 ELGRMITRVVEFLNLK 158 (530)
Q Consensus 143 ~Lgr~~k~L~k~L~i~ 158 (530)
.|..+++.|.+.+.-.
T Consensus 253 ~l~~c~~~I~~l~~~~ 268 (306)
T 3g33_B 253 CLRACQEQIEAALRES 268 (306)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888754
No 53
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=92.91 E-value=0.029 Score=46.06 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=28.3
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~ 31 (530)
.||.|+..++|+.+.+-.+.|..||.|+-.
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTILCT 65 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCCEE
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEEec
Confidence 699999999999999999999999999974
No 54
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.12 E-value=0.11 Score=38.76 Aligned_cols=27 Identities=22% Similarity=0.644 Sum_probs=21.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceee
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQ 29 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vl 29 (530)
.||.||++.+..+ ..+-..|..||.+.
T Consensus 21 ~CP~CG~~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEE-CSSEEECSSSCCEE
T ss_pred cCCCCCCceEEec-CCCeEECCCCCCEE
Confidence 4999999766554 45789999999874
No 55
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.97 E-value=0.036 Score=45.90 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=28.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeeccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFD 32 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~ 32 (530)
.||.|+..++|+.+.+-.+.|..||+|+-..
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 6999999999999999999999999999743
No 56
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.72 E-value=1.1 Score=44.43 Aligned_cols=82 Identities=9% Similarity=-0.001 Sum_probs=58.4
Q ss_pred hHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhc-ccccccCchhHHHHHHHHHHHHcCC-CCCHHHHHHHhC-
Q 047665 166 SMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW-FLTTGRRPMPVVVAVLVFVVELNGV-SVKIENVAKEVH- 242 (530)
Q Consensus 166 ~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~-~l~tGR~P~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~- 242 (530)
+++-.++..+++ . ..+.-.|..++++.-.. ..+.++++.-+++||+|+|++..+. ..++++++.+++
T Consensus 55 ~wl~~v~~~~~l---~-------~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~ 124 (283)
T 1w98_B 55 DWLMEVCEVYKL---H-------RETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG 124 (283)
T ss_dssp HHHHHHHHHTTC---B-------HHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT
T ss_pred HHHHHHHHHhCC---C-------ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC
Confidence 455667777776 3 45677888888886654 3568899999999999999999875 678999998764
Q ss_pred -CCHHHHHHHHHHHHH
Q 047665 243 -CTVVTCRKRYKELLE 257 (530)
Q Consensus 243 -VS~~TIrkRyKEL~e 257 (530)
.+...|.+-.+.|.+
T Consensus 125 ~~~~~ei~~mE~~IL~ 140 (283)
T 1w98_B 125 ACSGDEILTMELMIMK 140 (283)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 445444444333333
No 57
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=88.63 E-value=1.8 Score=48.24 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhh-CC---C-CCCCchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHH
Q 047665 73 LIDELTFKLDLTGQRSIQIKNMIDKITD-GE---F-GLGDWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRM 147 (530)
Q Consensus 73 ~I~~i~~~LgLp~~i~e~A~~i~k~a~~-~~---l-~rGR~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~ 147 (530)
....+|..|++++.+.++|...|..... .+ . ..| ......|+.+|.||+.+|..+||-.|-..++++..++
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg-~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~~lsl~~F--- 82 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKF--- 82 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----C-CHHHHHHHHHHHHHHTTCCCSCHHHHHHHHTCCHHHH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCccc-chHHhhhhhheeeeeccCCeeeHHHHHHHhcCCHHHH---
Confidence 5678899999999999999999999873 21 1 245 4556666667777777899999999999999998876
Q ss_pred HHHHHH
Q 047665 148 ITRVVE 153 (530)
Q Consensus 148 ~k~L~k 153 (530)
|.+|.+
T Consensus 83 F~kikk 88 (656)
T 4elj_A 83 FNLLKE 88 (656)
T ss_dssp HHHHHH
T ss_pred HHHhHh
Confidence 555555
No 58
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=87.83 E-value=0.38 Score=39.20 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCC
Q 047665 116 CSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLP 160 (530)
Q Consensus 116 clYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p 160 (530)
-|+-+.+..+-|+...|||..+|++.+++.+++.+|.+.-.+..|
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 467788999999999999999999999999999999998776544
No 59
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=87.43 E-value=1.4 Score=36.98 Aligned_cols=35 Identities=31% Similarity=0.587 Sum_probs=28.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+.. ...|-.-|..||.++.-+.+..+
T Consensus 38 ~CpfCgk~~vkR-~a~GIW~C~~Cg~~~AGGAy~~~ 72 (92)
T 3iz5_m 38 FCEFCGKFAVKR-KAVGIWGCKDCGKVKAGGAYTMN 72 (92)
T ss_dssp CCTTTCSSCBEE-EETTEEECSSSCCEEECCSSSSC
T ss_pred cCcccCCCeeEe-cCcceEEcCCCCCEEeCCcccCC
Confidence 599999986544 56899999999999997777653
No 60
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=86.68 E-value=1.5 Score=36.79 Aligned_cols=35 Identities=31% Similarity=0.637 Sum_probs=28.5
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+.. ...|-.-|..||.++.-+.+..+
T Consensus 38 ~CpfCgk~~vkR-~a~GIW~C~~C~~~~AGGAy~~~ 72 (92)
T 3izc_m 38 DCSFCGKKTVKR-GAAGIWTCSCCKKTVAGGAYTVS 72 (92)
T ss_dssp CCSSSCSSCCEE-EETTEEECTTTCCEEECCSSSSC
T ss_pred cCCCCCCceeee-cccceEEcCCCCCEEeCCcccCC
Confidence 599999976544 46899999999999997777653
No 61
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=86.51 E-value=2.4 Score=35.77 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=36.6
Q ss_pred CchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 212 ~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+| -.+|||+|.|++.+..+++...+...+|+++.-..+-.+.+..
T Consensus 45 ~P-~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~l~~~~e~ 89 (95)
T 3m03_A 45 RP-LFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLEK 89 (95)
T ss_dssp SH-HHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45 4677999999999999999999999999999766655444443
No 62
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=86.36 E-value=1.4 Score=37.70 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=28.4
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+ .-...|-.-|..||.++.-+.|..+
T Consensus 38 ~CpfCgk~~v-KR~a~GIW~C~kCg~~~AGGAy~~~ 72 (103)
T 4a17_Y 38 GCPFCGKVAV-KRAAVGIWKCKPCKKIIAGGAWELT 72 (103)
T ss_dssp ECTTTCCEEE-EEEETTEEEETTTTEEEECCSSCSS
T ss_pred CCCCCCCcee-eecCcceEEcCCCCCEEeCCcccCC
Confidence 5999999764 4456899999999999997777653
No 63
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=84.55 E-value=0.85 Score=31.56 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
..|..+||+.++||..||.+.++.+
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 4789999999999999999877643
No 64
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=84.20 E-value=0.78 Score=34.99 Aligned_cols=26 Identities=35% Similarity=0.926 Sum_probs=21.3
Q ss_pred CCCCCCCCCeEEecCCCcEEcC--CCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICV--SCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt--~CG~Vle 30 (530)
.||.|+++ +..+. |+++|. +||....
T Consensus 12 ~CP~c~~~-L~~~~--~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 12 ACPACHAP-LEERD--AELICTGQDCGLAYP 39 (56)
T ss_dssp CCSSSCSC-EEEET--TEEEECSSSCCCEEE
T ss_pred eCCCCCCc-ceecC--CEEEcCCcCCCcEEe
Confidence 69999995 55554 999999 9998765
No 65
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=84.11 E-value=11 Score=38.67 Aligned_cols=125 Identities=11% Similarity=0.152 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHhcC----------CCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCc----------------
Q 047665 108 WFPILIGACSYVVMRLDD----------KSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPE---------------- 161 (530)
Q Consensus 108 ~~~~vaAAclYiACR~~~----------~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~---------------- 161 (530)
-...+.|+|+=++..-++ .++++--|.+.++++.+++.++...+++.-+ .+|.
T Consensus 103 Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~-~LprelvkHL~~iEe~iLes 181 (347)
T 2r7g_A 103 FHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEG-NLTREMIKHLERCEHRIMES 181 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHH
Confidence 357888998877766443 3678889999999999999999988877621 1110
Q ss_pred -----------------------cchhhHHH-----------HHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhccc
Q 047665 162 -----------------------VDIVSMFE-----------RVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKWFL 207 (530)
Q Consensus 162 -----------------------vdp~~~I~-----------R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~~l 207 (530)
.....|+. .+|+.|.+ ... +..+.+...-..++ ..+..+
T Consensus 182 laW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~--~~~---~~~~~iWt~fe~~l--~~~t~L 254 (347)
T 2r7g_A 182 LAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLS--EHP---ELEHIIWTLFQHTL--QNEYEL 254 (347)
T ss_dssp GGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TCT---THHHHHHHHHHHHH--HHCGGG
T ss_pred HHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCC--Cch---HHHHHHHHHHHHHH--HhChHh
Confidence 00112221 23444443 111 11223333333333 235679
Q ss_pred ccccCchhHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047665 208 TTGRRPMPVVVAVLVFVVELNGVSVKIENVAKE 240 (530)
Q Consensus 208 ~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~ 240 (530)
..+|+---+..+|+|..++..+..+|.++|-+.
T Consensus 255 ~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~ 287 (347)
T 2r7g_A 255 MRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTA 287 (347)
T ss_dssp GTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999999888888877654
No 66
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.95 E-value=0.98 Score=37.25 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=28.7
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+ .....|-.-|..||.++.-+.+..+
T Consensus 37 ~CpfCGk~~v-kR~a~GIW~C~kCg~~~AGGAy~~~ 71 (83)
T 3j21_i 37 TCPVCGRKAV-KRISTGIWQCQKCGATFAGGAYLPV 71 (83)
T ss_dssp CCSSSCSSCE-EEEETTEEEETTTCCEEECCSSSSS
T ss_pred CCCCCCCcee-EecCcCeEEcCCCCCEEeCCccccC
Confidence 5999999865 4456899999999999997777653
No 67
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=83.91 E-value=0.45 Score=41.39 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMI 148 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~ 148 (530)
...+|..++|..+|++...|.+.-
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHH
Confidence 446889999999999988876653
No 68
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=83.60 E-value=0.54 Score=35.78 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceee
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQ 29 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vl 29 (530)
.||.||+..+.. ...+...|..||...
T Consensus 20 fCPkCG~~~~ma-~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 20 FCPRCGPGVFLA-EHADRYSCGRCGYTE 46 (55)
T ss_dssp CCTTTTTTCCCE-ECSSEEECTTTCCCE
T ss_pred cCcCCCCceeEe-ccCCEEECCCCCCEE
Confidence 599999965444 456789999999974
No 69
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=82.34 E-value=1 Score=36.36 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|.+.|..|||+.+|+|+.||+.-++.|.+
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998888766
No 70
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=82.34 E-value=0.74 Score=40.99 Aligned_cols=27 Identities=26% Similarity=0.679 Sum_probs=22.0
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.||.|++.-...| ...+||.+||.-..
T Consensus 29 ~CP~C~seytYeD--g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 29 PCPQCNSEYTYED--GALLVCPECAHEWS 55 (138)
T ss_dssp CCTTTCCCCCEEC--SSSEEETTTTEEEC
T ss_pred CCCCCCCcceEec--CCeEECCccccccC
Confidence 6999999766555 45799999999875
No 71
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=81.92 E-value=0.98 Score=34.15 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=21.1
Q ss_pred CCCCCCCCCeEEecC------CC---cEEcCCCceeecc
Q 047665 2 PCTSCGSKTLTREDI------SG---SLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~------~G---~~VCt~CG~Vle~ 31 (530)
.||.||+...++... ++ .++|.+||....+
T Consensus 17 ~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred ECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 699999976554322 23 4799999987653
No 72
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=81.89 E-value=0.92 Score=36.55 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=27.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+. -...|-..|..||.++.-+.+..+
T Consensus 29 ~C~fCgk~~vk-R~a~GIW~C~~C~~~~AGGAy~~~ 63 (73)
T 1ffk_W 29 KCPVCGFPKLK-RASTSIWVCGHCGYKIAGGAYTPE 63 (73)
T ss_pred cCCCCCCceeE-EEEeEEEECCCCCcEEECCCcccc
Confidence 59999987544 346799999999999987666543
No 73
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=81.62 E-value=0.66 Score=37.31 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCCCCCCCCCeEEecC------CC---------cEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDI------SG---------SLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~------~G---------~~VCt~CG~Vle 30 (530)
|.||.||+..++.+.. .| -.+|..||-++-
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 8999999865443321 12 357888887664
No 74
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=81.55 E-value=0.92 Score=39.63 Aligned_cols=35 Identities=20% Similarity=0.524 Sum_probs=27.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+ .-...|-..|..||.++.-+.+..+
T Consensus 62 tCPfCGk~~v-KR~avGIW~C~~Cgk~fAGGAy~~~ 96 (116)
T 3cc2_Z 62 ACPNCGEDRV-DRQGTGIWQCSYCDYKFTGGSYKPE 96 (116)
T ss_dssp ECSSSCCEEE-EEEETTEEEETTTCCEEECCSSSSS
T ss_pred cCCCCCCcee-EecCceeEECCCCCCEEECCCcccc
Confidence 5999998654 4446899999999999987766643
No 75
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=81.22 E-value=0.86 Score=44.33 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=20.9
Q ss_pred CCCCCCC-CCeEEecCCCcEEcCCCcee
Q 047665 2 PCTSCGS-KTLTREDISGSLICVSCGVV 28 (530)
Q Consensus 2 ~Cp~CG~-~~iv~D~~~G~~VCt~CG~V 28 (530)
.||.||+ ..+.++ ..|...|.+||.-
T Consensus 16 ~CP~Cg~~d~~~~~-~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLF-SDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEE-TTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEe-CCCCeecccCCCc
Confidence 6999998 566666 4578999999975
No 76
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=80.99 E-value=1.6 Score=32.26 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
..|.++||+..++|+.|++.+++.+.+.+.
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 568899999999999999999998887663
No 77
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=80.08 E-value=2 Score=32.46 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
...|.++||+..|+|+.|+++++......|.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999998888876654
No 78
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=80.04 E-value=1.8 Score=35.14 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...|.++||+.+|+|+.||++++......|-+.+..
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999988888776653
No 79
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=79.20 E-value=54 Score=34.59 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|+++||+..|||..|||++...-...|-
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998877666664
No 80
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=78.49 E-value=0.95 Score=38.40 Aligned_cols=14 Identities=21% Similarity=0.038 Sum_probs=12.5
Q ss_pred CCcEEcCCCceeec
Q 047665 17 SGSLICVSCGVVQA 30 (530)
Q Consensus 17 ~G~~VCt~CG~Vle 30 (530)
.|.++|..||....
T Consensus 51 ~~~LvC~~c~~~YP 64 (97)
T 2k5r_A 51 HEALITRDRKQVFR 64 (97)
T ss_dssp SEEEECTTSCEEEE
T ss_pred CCeEEcCCCCCCcc
Confidence 68999999999876
No 81
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=77.98 E-value=1.2 Score=35.80 Aligned_cols=35 Identities=29% Similarity=0.620 Sum_probs=28.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeecccCcccC
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFDNYDAQ 37 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~~f~~~ 37 (530)
.||.||...+ .....|-.-|..||.++.-+.+..+
T Consensus 28 ~C~fCgk~~v-kR~a~GIW~C~~C~~~~AGGAy~~~ 62 (72)
T 3jyw_9 28 DCSFCGKKTV-KRGAAGIWTCSCCKKTVAGGAYTVS 62 (72)
T ss_dssp CCSSCCSSCB-SBCSSSCBCCSSSCCCCCCSSSSSC
T ss_pred cCCCCCCcee-EecCCCeEECCCCCCEEeCCccccC
Confidence 5999999764 4456899999999999987776643
No 82
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=76.46 E-value=3.2 Score=38.20 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHhC--CCHHHHHHHHHHHHHHhh
Q 047665 110 PILIGACSYVVMRLDDKSLPISEVASVLN--CDVYELGRMITRVVEFLN 156 (530)
Q Consensus 110 ~~vaAAclYiACR~~~~P~TL~DIA~~~~--vd~~~Lgr~~k~L~k~L~ 156 (530)
..++=|.+|++ +-|+|+.+++.+++ ++..++..+...|...+.
T Consensus 9 ~~~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~ 53 (162)
T 1t6s_A 9 LRSLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYE 53 (162)
T ss_dssp HHHHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhh
Confidence 35567778876 77999999999999 999999999998888775
No 83
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=76.25 E-value=2 Score=42.19 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+-+.+. .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 125 il~aa~~l~~~-~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe~Ll~av~~ 173 (311)
T 4ich_A 125 ILETAWRLIAR-RGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALR 173 (311)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHH
Confidence 44444444333 464 5999999999999999998887765554444443
No 84
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=75.97 E-value=4.3 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
..|.++||+..|+|+.|++.+++.+.+.+.
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 469999999999999999999999887664
No 85
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=74.88 E-value=1.2 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=20.3
Q ss_pred CCCCCCCCCCeEEecCCC--cEEcCCCceeec
Q 047665 1 MPCTSCGSKTLTREDISG--SLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G--~~VCt~CG~Vle 30 (530)
..||.|++++...--..+ .+-|..||..-.
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccc
Confidence 369999997533333334 468999998643
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=74.34 E-value=2.6 Score=32.18 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
...|.+|||+..|+|+.||++++......|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999988877766544
No 87
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=74.06 E-value=4 Score=32.56 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.++||+..++|..||+++++.+++.|.
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3479999999999999999999988887664
No 88
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.61 E-value=0.86 Score=36.39 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=16.3
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCce-eec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGV-VQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~-Vle 30 (530)
.|+.||...-+. ....+.|..||. |+-
T Consensus 30 ~C~~CG~~~e~~--~~d~irCp~CG~RILy 57 (70)
T 1twf_L 30 ICAECSSKLSLS--RTDAVRCKDCGHRILL 57 (70)
T ss_dssp ECSSSCCEECCC--TTSTTCCSSSCCCCCB
T ss_pred ECCCCCCcceeC--CCCCccCCCCCceEeE
Confidence 488888742111 234567888888 554
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.84 E-value=4.9 Score=31.02 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.+|||+..|+|+.|++++.......|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999888887776
No 90
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=72.76 E-value=5.3 Score=36.40 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 108 ~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
+....+-+.+|+|.+..+.|.|..+||+..+++...+.+.+..|.+.
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45677888899997766779999999999999999999998888764
No 91
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=72.45 E-value=11 Score=32.00 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCC--CCccCcccccccChhHHHHHhHHHHHhh
Q 047665 223 FVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALP--WGKDVTVKNVLKNAPFVMNYMEMKSMEK 295 (530)
Q Consensus 223 lAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lp--W~~~v~~knl~~~~pdIi~~~e~~~~~~ 295 (530)
+|+..+-...||.+||+..|+|..|+.+-++.-.+.+.. ..+| |.. |+. .+|.+.-++++-.+...+++
T Consensus 26 ~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~--~~~P~g~~r-v~v-~lP~~~a~~v~~~~~~a~~~ 96 (101)
T 2w7n_A 26 IARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFED--KNLPEGYAR-VTA-VLPEHQAYIVRKWEADAKKK 96 (101)
T ss_dssp HHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH--TCCCTTEEE-EEE-EECHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhc--cCCCCCeeE-Eee-ecCHHHHHHHHHHHHHHHHh
Confidence 333345578999999999999999999988888877643 2455 321 221 33455455555555555443
No 92
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=72.41 E-value=2.2 Score=31.00 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
..|+.+||+.+|+|..|+++.++
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 46999999999999999988764
No 93
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=72.29 E-value=4.4 Score=36.45 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-++|..+||+.+|+|++|+++|++.|.+.
T Consensus 15 ~~~~s~~~la~~lg~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 15 DSTLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp CSCSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456899999999999999999999999874
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=72.19 E-value=3.9 Score=33.60 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
..|.++||+..++|+.||+++++.++..|..-
T Consensus 42 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999998877543
No 95
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=71.61 E-value=60 Score=29.56 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
...|.++||+..|+|+.||++++......|-+.+.
T Consensus 202 ~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 202 EELPAKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999888887766543
No 96
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.50 E-value=1 Score=31.72 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|..+||+.+|||..||.+.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999999886553
No 97
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=71.31 E-value=4.4 Score=32.91 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..+|..+||+.+|+|..||+++++.|.+
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35799999999999999999999998876
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=71.01 E-value=5.5 Score=30.81 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.++||+..++|+.|++.+++.+.+.|.
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988877653
No 99
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=70.69 E-value=2.1 Score=34.21 Aligned_cols=28 Identities=29% Similarity=0.662 Sum_probs=22.7
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeeccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFD 32 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~ 32 (530)
.|| ||.. .+.+...-..-|. ||.++...
T Consensus 6 ~C~-C~~~-~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD-CGRA-LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET-TSCC-EEEETTCSEEEET-TTEEEECC
T ss_pred ECC-CCCE-EEEcCCCcEEECC-CCCeeeec
Confidence 699 9986 4666677788999 99999854
No 100
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=70.65 E-value=4.8 Score=32.34 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
...|.++||+..|+|+.|+++++......|-...
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999887777665433
No 101
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=70.33 E-value=3.8 Score=32.77 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..+|..+||+.++++..||+++++.|.+
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999998875
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.73 E-value=6.3 Score=34.73 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|++|+++|++.|.+.
T Consensus 20 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 20 NARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 347899999999999999999999999774
No 103
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=69.29 E-value=6.6 Score=34.50 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|+.|++++++.|.+.
T Consensus 21 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 21 NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999764
No 104
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=69.12 E-value=6.6 Score=34.61 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-+.|..+||+.+|+|++|+++|++.|.+.
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 20 GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47899999999999999999999999774
No 105
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=67.95 E-value=6.5 Score=35.90 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-+.|..+||+.+|+|+.|++.|++.|.+.
T Consensus 40 ~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 40 GKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999999999774
No 106
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.90 E-value=1.1 Score=33.71 Aligned_cols=23 Identities=30% Similarity=0.753 Sum_probs=19.0
Q ss_pred CCCCCCCCCCeEEecCCCcEEcCCCcee
Q 047665 1 MPCTSCGSKTLTREDISGSLICVSCGVV 28 (530)
Q Consensus 1 M~Cp~CG~~~iv~D~~~G~~VCt~CG~V 28 (530)
|.||.|++. -..|-.-|..||..
T Consensus 15 ~iCpkC~a~-----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGAT-----NPWGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCE-----ECTTCSSCSSSSSC
T ss_pred ccCCCCCCc-----CCCCceecCCCCCc
Confidence 469999985 35788999999987
No 107
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=67.75 E-value=6.8 Score=34.29 Aligned_cols=30 Identities=7% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|++|++++++.|.+.
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999763
No 108
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=67.52 E-value=7.6 Score=33.48 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|..|++++++.|.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 446899999999999999999999999763
No 109
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=67.35 E-value=3.9 Score=33.10 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
..|.++||+..++|+.||+++++.+++.|.
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 578999999999999999999988877653
No 110
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=67.14 E-value=5.3 Score=34.51 Aligned_cols=35 Identities=3% Similarity=-0.008 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
...|.++||+..|+|+.|+++++......|-+.+.
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999988888876654
No 111
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=67.10 E-value=5.2 Score=32.75 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
..|.++||+.+++|+.||++.++.+++.|.
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 568999999999999999999999887663
No 112
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=66.61 E-value=9.4 Score=32.70 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVE 153 (530)
Q Consensus 110 ~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k 153 (530)
...+.+..|++-+..+-|.|..+||+.++++...+.+.+..|.+
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455556666554567899999999999999999999888876
No 113
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=66.53 E-value=3.8 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=22.4
Q ss_pred CCCCCCCC---CeEEecC--CCcEEcCCCceeecc
Q 047665 2 PCTSCGSK---TLTREDI--SGSLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~---~iv~D~~--~G~~VCt~CG~Vle~ 31 (530)
.||.|++. .+..|.. .|.+.|..||.-.+.
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred cCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 59999986 3445444 478999999987663
No 114
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=66.33 E-value=6.1 Score=33.04 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=26.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
..|.+|||+.+++|+.||+.+++.+++.|.
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 568899999999999999999998888663
No 115
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=66.23 E-value=87 Score=31.37 Aligned_cols=104 Identities=13% Similarity=-0.036 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHhh--CCCC-CCCchhHHHHHHHHHHHHh-cCCCCChHHHHHHhCCCHHHHH
Q 047665 70 SNKLIDELTFKLDLTGQRSIQIKNMIDKITD--GEFG-LGDWFPILIGACSYVVMRL-DDKSLPISEVASVLNCDVYELG 145 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~i~e~A~~i~k~a~~--~~l~-rGR~~~~vaAAclYiACR~-~~~P~TL~DIA~~~~vd~~~Lg 145 (530)
..++|.++...-+++..+.-.|..++.++.. .++. ......-+..+|+.+|.+- .....+-+..|.+.|++..+|.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHH
Confidence 3457888888889999888888777777754 2332 2234556667777778775 6677888999999999999999
Q ss_pred HHHHHHHHHhhhcCCccchhhHHHHHHHh
Q 047665 146 RMITRVVEFLNLKLPEVDIVSMFERVIRN 174 (530)
Q Consensus 146 r~~k~L~k~L~i~~p~vdp~~~I~R~~~~ 174 (530)
+.-+.+...|+.++- ++++.|...+...
T Consensus 157 ~LE~eFL~lLdf~L~-V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 157 ILENDFLKRVNYRII-PRDHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHTTTTCCS-CCTTHHHHHHHHS
T ss_pred HHHHHHHHHcCCcee-eCHHHHHHHHHHH
Confidence 999999999887742 3455555444443
No 116
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=66.22 E-value=7.5 Score=34.67 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|++|++++++.|.+.
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999774
No 117
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=65.90 E-value=10 Score=29.85 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
..|..+||+.+++|.+|+++.++.|.+.
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5899999999999999999999998764
No 118
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.46 E-value=7.8 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|++|++++++.|.+.
T Consensus 15 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 15 NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 346899999999999999999999999773
No 119
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=65.38 E-value=6.8 Score=31.53 Aligned_cols=28 Identities=4% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-.++..++|+.++||+.|||.-+.+|.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4699999999999999999998887766
No 120
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=65.25 E-value=7.9 Score=35.27 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-+.|..+||+.+|+|++|+++|++.|.+.
T Consensus 29 ~~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 29 DARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 347899999999999999999999999763
No 121
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=65.06 E-value=6.6 Score=34.84 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 109 ~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
...-+-+.+|+|....+.|+|..+||+.++++...+.+.+..|.+.
T Consensus 10 ~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 10 GRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4455667788887655679999999999999999999999888764
No 122
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=64.05 E-value=6.9 Score=33.48 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...|.++||+..|+|+.|+++++......|.+....
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999988888776654
No 123
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=64.04 E-value=8.3 Score=29.68 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=28.5
Q ss_pred HhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 122 RLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 122 R~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
+.++.|++..|||..++++...+.+.+..|.+.
T Consensus 20 ~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 20 SDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456678999999999999999999998887663
No 124
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=63.99 E-value=7 Score=33.30 Aligned_cols=36 Identities=3% Similarity=0.048 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...|.++||+..|+|+.|+++++......|.+....
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999888888776654
No 125
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=63.65 E-value=5.5 Score=30.81 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyK 253 (530)
+|++|||+.+|||..|+.+.+.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999988654
No 126
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.27 E-value=9.4 Score=33.48 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-+.|..+||+.+|+|++|++++++.|.+
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34789999999999999999999999876
No 127
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=62.37 E-value=3.8 Score=28.20 Aligned_cols=21 Identities=33% Similarity=0.792 Sum_probs=11.3
Q ss_pred CCCCCCCCCeEEecCCCcEEc
Q 047665 2 PCTSCGSKTLTREDISGSLIC 22 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VC 22 (530)
.|+.||.--.+.....|.++|
T Consensus 8 ~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 8 KCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp ECTTTCCEEEEEECCSSCEEE
T ss_pred EcCCCCcEEEEEeCCCcCEEe
Confidence 467776532333345566666
No 128
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=62.00 E-value=10 Score=33.68 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 108 WFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVE 153 (530)
Q Consensus 108 ~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k 153 (530)
+....+-+.+|+|-+ .+-|.|..+||+.++++...+.+.+..|.+
T Consensus 12 ~~~yAl~~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 12 RFSIAVHILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHHHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345667777888863 566899999999999999999999998877
No 129
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=61.60 E-value=9.6 Score=37.98 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=28.2
Q ss_pred HHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 224 Aa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
++......+++.+||+.++||+.|||+-++++.+
T Consensus 14 a~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 14 AQLYYEQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3334456799999999999999999998888766
No 130
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=61.34 E-value=8.6 Score=34.45 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...|.+|||+..|+|+.|+++++....+.|-+.+..
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999888888766543
No 131
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=61.30 E-value=4.3 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCCCCCCCC-eEEe--cCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKT-LTRE--DISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~-iv~D--~~~G~~VCt~CG~Vle 30 (530)
.||.||.-- +..| ...+.+.|..||....
T Consensus 6 FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 6 FCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp BCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred cccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 699999842 3334 3346799999999876
No 132
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=60.57 E-value=5.7 Score=29.43 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=18.5
Q ss_pred CCCCCCCCCeEEec------CCC---cEEcCCCceee
Q 047665 2 PCTSCGSKTLTRED------ISG---SLICVSCGVVQ 29 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~------~~G---~~VCt~CG~Vl 29 (530)
.||.||+...++=. +++ .++|.+||...
T Consensus 11 ~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 11 TCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 69999986544221 122 47999999754
No 133
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=60.47 E-value=8.2 Score=34.11 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
...|.+|||+.+|+|+.|+++++..-...|-+.+..
T Consensus 108 ~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999888888776654
No 134
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=60.45 E-value=63 Score=32.40 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=64.0
Q ss_pred hcCCccchhhHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhc---ccccccCchhHHHHHHHHHHHHcC-CCC
Q 047665 157 LKLPEVDIVSMFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW---FLTTGRRPMPVVVAVLVFVVELNG-VSV 232 (530)
Q Consensus 157 i~~p~vdp~~~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~---~l~tGR~P~sIAAAAIYlAa~~~g-~k~ 232 (530)
...|.+....|+.|+.+...+ + ..+.-.|.-.++++... ...+..+..-+..+|+.+|++..+ ...
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~l---s-------~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~y 139 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSSL---E-------HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFS 139 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTTC---C-------HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCcHHHHHHHHHHHcCC---C-------HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcccccc
Confidence 346788888999999988776 3 23344444455555442 233566788899999999999976 457
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 233 KIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 233 t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
+-+.+|++.|++...+. .|...+..++
T Consensus 140 sN~~wAkVgGisl~ELN----~LE~eFL~lL 166 (293)
T 2pmi_B 140 TNAHYAKVGGVRCHELN----ILENDFLKRV 166 (293)
T ss_dssp CHHHHHHHHTSCHHHHH----HHHHHHHHTT
T ss_pred ChhHhhhccCcCHHHHH----HHHHHHHHHc
Confidence 88999999999865443 3444444443
No 135
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=59.74 E-value=10 Score=30.37 Aligned_cols=30 Identities=7% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
|.|.|+.|||+.+|++..++.+-+..|.+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 789999999999999999888887777664
No 136
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=59.57 E-value=13 Score=30.69 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.|..+|..+||+.+|+|.+|++..++.|.+.
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5657899999999999999999999998874
No 137
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=59.35 E-value=12 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=26.9
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+-.++..+||+.++++..||.+.++.|.+.
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456899999999999999999999998773
No 138
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=59.12 E-value=1.6 Score=33.72 Aligned_cols=20 Identities=30% Similarity=0.903 Sum_probs=12.5
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCce
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGV 27 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~ 27 (530)
.||+||+..+ --.||.+||+
T Consensus 32 ~c~~cGe~~~------~H~vc~~CG~ 51 (60)
T 3v2d_5 32 PCPECKAMKP------PHTVCPECGY 51 (60)
T ss_dssp ECTTTCCEEC------TTSCCTTTCE
T ss_pred ECCCCCCeec------ceEEcCCCCc
Confidence 4778877322 2247888884
No 139
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=58.51 E-value=1.8 Score=33.47 Aligned_cols=20 Identities=40% Similarity=0.982 Sum_probs=12.4
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCce
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGV 27 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~ 27 (530)
.||.||...+ --.+|.+||+
T Consensus 32 ~c~~cG~~~~------pH~vc~~CG~ 51 (60)
T 2zjr_Z 32 ECPQCHGKKL------SHHICPNCGY 51 (60)
T ss_dssp ECTTTCCEEC------TTBCCTTTCB
T ss_pred ECCCCCCEeC------CceEcCCCCc
Confidence 4777777422 2348888884
No 140
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=58.28 E-value=6.3 Score=33.91 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=20.7
Q ss_pred CCCCCCCCCeEEecC---CCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDI---SGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~---~G~~VCt~CG~Vle 30 (530)
.||.||+--...... ...++|..||.+..
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 599999964443321 22689999999876
No 141
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=58.13 E-value=12 Score=32.83 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=35.4
Q ss_pred cCchhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 211 RRPMPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 211 R~P~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
..|.-|.-||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 7 ~~~~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av 58 (192)
T 2zcm_A 7 HMKDKIIDNAITLFSE-KGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKS 58 (192)
T ss_dssp -CHHHHHHHHHHHHHH-HCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-cCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 3455566666655554 464 69999999999999999998876544433333
No 142
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=57.62 E-value=18 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEV-----HCTVVTCRKRYKEL 255 (530)
Q Consensus 229 g~k~t~~eIA~~~-----~VS~~TIrkRyKEL 255 (530)
+-.+|..+|++.+ +||..||++-++++
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 3478999999999 99999998877743
No 143
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=57.61 E-value=7.1 Score=32.10 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCC
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPW 268 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW 268 (530)
.++|+.||+.+||+++||.+.-....+....++..+-|
T Consensus 24 ~~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~Lgl 61 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEW 61 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHhcc
Confidence 36899999999999999988767777777777776655
No 144
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=57.00 E-value=1.9e+02 Score=30.09 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|+++||+..|||..|||++...-...|-
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998877666665
No 145
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=56.91 E-value=34 Score=31.78 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~ 203 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKR 203 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999888876
No 146
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=56.41 E-value=31 Score=33.19 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhh
Q 047665 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLN 156 (530)
Q Consensus 109 ~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~ 156 (530)
...++=|.+|++ +-|+++.+++.+++++..++..+...|...+.
T Consensus 16 l~~~iEAlLf~a----~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~ 59 (219)
T 2z99_A 16 LKRVLEALLLVI----DTPVTADALAAATEQPVYRVAAKLQLMADELT 59 (219)
T ss_dssp HHHHHHHHHHHC----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 345677888875 77999999999999999999999998888774
No 147
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=56.02 E-value=39 Score=32.41 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHh----hcccccccCchhHHHHHHHHHHHHcCCCCCHHHH
Q 047665 167 MFERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAV----KWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENV 237 (530)
Q Consensus 167 ~I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~----~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eI 237 (530)
-+.+.-++..+ + +.|..+|.+|++... ..+.- =-+|..+||||+.+|++-.+.++++.|+
T Consensus 18 clr~L~kKs~~---~-------eaVL~~AieLar~fvg~rR~rgqR-vE~q~dVAAAc~miAae~~~~PiplaE~ 81 (260)
T 3h4c_A 18 CMRGLHKKAVL---P-------EPVLDRGIELARAFVGGRRARGQR-VERQPDVAAACLMIAAEEAQQPLPLAEV 81 (260)
T ss_dssp HHHHHHHHTTC---C-------HHHHHHHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHhhccC---c-------HHHHHHHHHHHHHHhhhhhhhccc-ccccHHHHHHHHHHHHHHcCCCccHHHH
Confidence 34555555554 3 467777877776532 11111 1368999999999999999999998764
No 148
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=55.94 E-value=10 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 13 IFSATDRLMAR-EGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 44444444443 564 599999999999999999888775554444443
No 149
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=55.86 E-value=4.3 Score=39.66 Aligned_cols=30 Identities=20% Similarity=0.512 Sum_probs=20.2
Q ss_pred CCCCCCCCCCe---EEecCCCcEEcCCCceeec
Q 047665 1 MPCTSCGSKTL---TREDISGSLICVSCGVVQA 30 (530)
Q Consensus 1 M~Cp~CG~~~i---v~D~~~G~~VCt~CG~Vle 30 (530)
|.||+||+..+ .-+.--++..|.+|+--.+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTCCEEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcchhhe
Confidence 68999999543 2222336789999997766
No 150
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=55.60 E-value=13 Score=30.34 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=24.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.|..+||+.+|+|..||+++++.|.+
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78889999999999999999999866
No 151
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=55.25 E-value=17 Score=29.04 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+|+.+||+.++++.+|+++.++.|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999988865
No 152
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=54.93 E-value=17 Score=33.31 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+|..++|+.++||..||+++++.|.+.
T Consensus 35 ~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 35 EPVSGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999999873
No 153
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.79 E-value=3.2 Score=30.42 Aligned_cols=7 Identities=57% Similarity=1.384 Sum_probs=3.8
Q ss_pred EcCCCce
Q 047665 21 ICVSCGV 27 (530)
Q Consensus 21 VCt~CG~ 27 (530)
+|..||.
T Consensus 32 ~CP~Cg~ 38 (46)
T 6rxn_A 32 CCPVCGV 38 (46)
T ss_dssp BCTTTCC
T ss_pred cCcCCCC
Confidence 5555553
No 154
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=54.26 E-value=17 Score=31.09 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 220 VLVFVVELNGVS-VKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 220 AIYlAa~~~g~k-~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.||.+-...+-. +|+.+||+.++++.+|+.+.++.|.+
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344443334445 89999999999999999999888876
No 155
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=54.12 E-value=7.5 Score=36.10 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.5
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCcee
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVV 28 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~V 28 (530)
.||.|++. +.+...|.+.|..||..
T Consensus 44 ACp~CnKK--V~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKS--VLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCC--EEEETTTEEEETTTTEE
T ss_pred hchhhCCE--eeeCCCCeEECCCCCCC
Confidence 49999886 45678899999999998
No 156
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=54.03 E-value=16 Score=31.89 Aligned_cols=48 Identities=8% Similarity=0.134 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 7 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 55 (194)
T 3bqz_B 7 ILGVAKELFIK-NGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILN 55 (194)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHH
Confidence 34444444444 55 46999999999999999999888765555555443
No 157
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=53.69 E-value=70 Score=26.32 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=36.1
Q ss_pred ccCchhHHH---HHHHHHHHHcCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Q 047665 210 GRRPMPVVV---AVLVFVVELNGVSVKIENVAKEV-HCTVVTCRKRYKELLEAL 259 (530)
Q Consensus 210 GR~P~sIAA---AAIYlAa~~~g~k~t~~eIA~~~-~VS~~TIrkRyKEL~e~L 259 (530)
.++...++- -|.|++-++. ..|+++|++.+ |.+.+|+...++.+.+.+
T Consensus 24 ~~R~~~i~~aRqiamyL~r~~t--~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 24 KRRSRSVARPRQMAMALAKELT--NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHH--CcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 333444444 3678877765 57899999999 899999999988887755
No 158
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=52.64 E-value=13 Score=33.73 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 109 FPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 109 ~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..+-+-+.+|+|.. .+-|+|..+||+.++++...|.+.+..|.+.
T Consensus 11 ~~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~a 55 (162)
T 3k69_A 11 FSVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKH 55 (162)
T ss_dssp HHHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 44556677788864 3678999999999999999999999988774
No 159
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=52.49 E-value=15 Score=32.39 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 63 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNL 63 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHH
Confidence 34444444433 464 69999999999999999988776544444333
No 160
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=52.16 E-value=84 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
+-++|..||++.++++...+.+.+++|.+.
T Consensus 48 ~~~~~~~el~~~l~~~~~t~t~~l~rLe~~ 77 (250)
T 1p4x_A 48 ENTLPFKKIVSDLCYKQSDLVQHIKVLVKH 77 (250)
T ss_dssp CSEEEHHHHHHHSSSCGGGTHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 357899999999999999999999998875
No 161
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=51.91 E-value=48 Score=32.08 Aligned_cols=84 Identities=19% Similarity=0.040 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhcCCCHH----HHHHHHHHHHHHh-hCCCCCCCchhHHHHHHHHHHHHhcCCCCC----hHHHHHHhCCC
Q 047665 70 SNKLIDELTFKLDLTGQ----RSIQIKNMIDKIT-DGEFGLGDWFPILIGACSYVVMRLDDKSLP----ISEVASVLNCD 140 (530)
Q Consensus 70 a~~~I~~i~~~LgLp~~----i~e~A~~i~k~a~-~~~l~rGR~~~~vaAAclYiACR~~~~P~T----L~DIA~~~~vd 140 (530)
.+.+++.+...++.+.. +...|..+...+. +..+. .-++..+||||+..+. .+.+.+ ...++..+|++
T Consensus 149 p~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l-~~~PS~iAaaa~~~~l--~~~~~~~~~~~~~L~~~t~~~ 225 (252)
T 1f5q_B 149 STDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSA-MKRPVLITLACMHLTM--NQKYDYYENRIDGVCKSLYIT 225 (252)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHH-TSCHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhh-ccCHHHHHHHHHHHHh--ccCCCchhhHHHHHHHHHCcC
Confidence 45678888888888764 3334444444332 22332 3357788888854443 333333 34577789999
Q ss_pred HHHHHHHHHHHHHHhh
Q 047665 141 VYELGRMITRVVEFLN 156 (530)
Q Consensus 141 ~~~Lgr~~k~L~k~L~ 156 (530)
...|..+++.|.+.+.
T Consensus 226 ~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 226 KEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988774
No 162
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=51.89 E-value=35 Score=28.20 Aligned_cols=70 Identities=3% Similarity=-0.041 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHH--HHHHHHHHhcCCCCChHHHHHHh-CCCHHHHHHHH
Q 047665 72 KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIG--ACSYVVMRLDDKSLPISEVASVL-NCDVYELGRMI 148 (530)
Q Consensus 72 ~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaA--AclYiACR~~~~P~TL~DIA~~~-~vd~~~Lgr~~ 148 (530)
..++.+|+.+|++..-+ ..++|+...+.| -+.|++-. -...|+.+|+..+ |-|..++..++
T Consensus 5 ~I~~~Va~~f~i~~~dl--------------~s~~R~~~i~~aRqiamyL~r~--~t~~Sl~~IG~~fggrdHsTV~ha~ 68 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADL--------------LSKRRSRSVARPRQMAMALAKE--LTNHSLPEIGDAFGGRDHTTVLHAC 68 (94)
T ss_dssp HHHHHHHHHTTCCHHHH--------------HSCCCCHHHHHHHHHHHHHHHH--HSCCCHHHHHHHTTSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH--------------hCCCCCchhHHHHHHHHHHHHH--HHCcCHHHHHHHhCCCCHHHHHHHH
Confidence 34556666666665211 124454444333 34666533 3568899999999 79999999999
Q ss_pred HHHHHHhhh
Q 047665 149 TRVVEFLNL 157 (530)
Q Consensus 149 k~L~k~L~i 157 (530)
+++.+.+..
T Consensus 69 ~ki~~~~~~ 77 (94)
T 1j1v_A 69 RKIEQLREE 77 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998864
No 163
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=51.86 E-value=14 Score=31.98 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+=+.++ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 13 ~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (195)
T 3ppb_A 13 AILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLF 61 (195)
T ss_dssp HHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 344455544444 56 4699999999999999999988775555444443
No 164
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=51.83 E-value=4.9 Score=31.12 Aligned_cols=22 Identities=41% Similarity=0.866 Sum_probs=17.4
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.||.||.-++ ..+|..||....
T Consensus 8 ~C~~CgvYTL-------k~~CP~CG~~T~ 29 (60)
T 2apo_B 8 KCPKCGLYTL-------KEICPKCGEKTV 29 (60)
T ss_dssp ECTTTCCEES-------SSBCSSSCSBCB
T ss_pred eCCCCCCEec-------cccCcCCCCcCC
Confidence 5999988544 448999998876
No 165
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=51.82 E-value=16 Score=32.01 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+..+ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 19 MLDAAVDVFSD-RGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 44444444433 464 799999999999999999988765444444433
No 166
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=51.57 E-value=34 Score=30.81 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988877
No 167
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.46 E-value=36 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999998876
No 168
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=51.39 E-value=13 Score=33.04 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
-|..||+=+..+ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 16 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~ 65 (189)
T 3vp5_A 16 RVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLS 65 (189)
T ss_dssp HHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 344455544444 564 6999999999999999998887765555555443
No 169
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=51.38 E-value=10 Score=31.76 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.4
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSV-KIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~-t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.++ +..++|+..+||..|||+.++.|.+.
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~~~ 70 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLESA 70 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345 89999999999999999999988763
No 170
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.31 E-value=20 Score=32.08 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 213 PMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 213 P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-.-|..||+=+.++-- ...|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3446666666666655 7799999999999999999988876544444443
No 171
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=51.24 E-value=9.4 Score=31.50 Aligned_cols=28 Identities=0% Similarity=-0.005 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-.++..++|+.++||+.|||.-+.+|.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999998777655
No 172
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=51.23 E-value=16 Score=32.30 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 214 MPVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.-|..||+=+.++ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 17 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (212)
T 3knw_A 17 QHILDSGFHLVLR-KGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 66 (212)
T ss_dssp HHHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 3344455544444 46 4699999999999999999988776555444444
No 173
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=51.08 E-value=12 Score=32.51 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.3
Q ss_pred cCCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 228 NGVSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 228 ~g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.|.++ |..++|+..|||..|||..|+.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677 7889999999999999999999866
No 174
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=50.62 E-value=22 Score=31.38 Aligned_cols=47 Identities=6% Similarity=0.078 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+..+ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 21 Il~aa~~lf~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 68 (213)
T 2qtq_A 21 LLQTASNIMRE-GDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp HHHHHHHHHHH-HTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHH
Confidence 44444444443 464 699999999999999999988876555444444
No 175
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=50.60 E-value=10 Score=34.82 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=23.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeeccc--Cccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFD--NYDA 36 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~--~f~~ 36 (530)
.||.|+ ..++++. |.++|+ |.+-+|. .|..
T Consensus 80 ~CP~C~-G~l~y~~--~~Y~C~--G~isewtkC~~~t 111 (160)
T 2riq_A 80 PCEECS-GQLVFKS--DAYYCT--GDVTAWTKCMVKT 111 (160)
T ss_dssp CCTTTC-CCEEEET--TEEEEC--CEEETTEECCCEE
T ss_pred CCCCCC-CEEEEeC--CeEEEC--CCCCCcccCcccC
Confidence 699999 5788874 999998 8887764 4543
No 176
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=50.50 E-value=21 Score=32.88 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 227 LNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 227 ~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..|...|++|||+.+|++..|++.+++.|.+
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3567789999999999999999999888765
No 177
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=50.47 E-value=27 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHhCCCHHH-HHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVT-CRKRYKELLEA 258 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~T-IrkRyKEL~e~ 258 (530)
.+..+++.+||+.++++.+| +...++.|.+.
T Consensus 27 ~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp TTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 44479999999999999999 99998888764
No 178
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=50.40 E-value=17 Score=34.18 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.+|||+..++|+.|++.+++.+++.|.
T Consensus 187 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 187 VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999988774
No 179
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=50.32 E-value=17 Score=31.76 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+..+ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 13 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (206)
T 3dew_A 13 LMEVATELFAQ-KGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQ 61 (206)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 44444444433 464 6999999999999999999888765555555443
No 180
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=50.19 E-value=9.6 Score=35.38 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=20.6
Q ss_pred CCCCCCCCC--eEEecCCC--cEEcCCCceeec
Q 047665 2 PCTSCGSKT--LTREDISG--SLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~--iv~D~~~G--~~VCt~CG~Vle 30 (530)
.|+.|++++ ++.|...+ .+.|..||..-.
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 699999965 44432444 478999998755
No 181
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=50.01 E-value=18 Score=28.74 Aligned_cols=29 Identities=0% Similarity=0.046 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-..++.+||+.++++.+|+...++.|.+
T Consensus 36 ~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 36 SPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp CCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34789999999999999999999998864
No 182
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=50.00 E-value=21 Score=30.41 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+..+|.++||+..+++..++++-++.|.+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45789999999999999999999888877
No 183
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=49.94 E-value=61 Score=26.87 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999998888764
No 184
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=49.91 E-value=14 Score=34.85 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.+|||+..++|+.|++.+++.+++.|.
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999988774
No 185
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=49.66 E-value=19 Score=31.87 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+..+ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 23 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 70 (212)
T 1pb6_A 23 ILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHH
Confidence 44444444433 46 4699999999999999999988876444444443
No 186
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=49.58 E-value=37 Score=30.70 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999988865
No 187
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=49.48 E-value=18 Score=29.03 Aligned_cols=28 Identities=4% Similarity=0.073 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.+++|.+|+++.++.|.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4688999999999999999999999876
No 188
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.32 E-value=1.2e+02 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+++.+||+.++++.+|+...++.|.+.
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~ 77 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 457999999999999999999998888774
No 189
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=49.27 E-value=46 Score=30.30 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998866
No 190
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=49.20 E-value=12 Score=29.14 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRy 252 (530)
.+|+.|||+.+|||..|+.+.+
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 4799999999999999997754
No 191
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=49.17 E-value=14 Score=31.95 Aligned_cols=48 Identities=8% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+..+ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 13 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (194)
T 2g7s_A 13 ILQCARTLIIR-GGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVS 61 (194)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHH
Confidence 34444444433 464 6999999999999999999888765555555443
No 192
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=49.06 E-value=21 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
...|.++||+..|+|..|++++...-...|-+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999877665555443
No 193
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=48.82 E-value=21 Score=32.40 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+.+|+|....+..+|.++||+..++++..+++-+..|.+.
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456665433456999999999999999999988887663
No 194
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=48.56 E-value=28 Score=28.71 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEV-HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~-~VS~~TIrkRyKEL~e~ 258 (530)
.-..++.+|++.+ ++|.+|+..+++.|.+.
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~ 55 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEAD 55 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3468999999999 99999999999998873
No 195
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=48.39 E-value=19 Score=31.78 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 19 Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 66 (220)
T 3lhq_A 19 ILDVALRLFSQ-QGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIW 66 (220)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHH
Confidence 44444444433 464 599999999999999999988876555444444
No 196
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=48.39 E-value=22 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..||.+||+.+|+|.+||.+- +....
T Consensus 57 ge~TQREIA~~lGiS~stISRi-~r~L~ 83 (101)
T 1jhg_A 57 GEMSQRELKNELGAGIATITRG-SNSLK 83 (101)
T ss_dssp CCSCHHHHHHHHCCCHHHHHHH-HHHHH
T ss_pred CCcCHHHHHHHHCCChhhhhHH-HHHHH
Confidence 3599999999999999999765 43333
No 197
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=48.31 E-value=29 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.++|+.+||..+|+|..|+.+-+++|.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999999998763
No 198
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=48.21 E-value=20 Score=28.53 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+.+.++.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999888763
No 199
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=47.88 E-value=18 Score=32.11 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+..+ .|+ .+|+.+||+.+|||..|+-..|..-.+.+..++
T Consensus 36 Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 83 (218)
T 3dcf_A 36 IIKVATELFRE-KGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIV 83 (218)
T ss_dssp HHHHHHHHHHH-TCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444444333 564 599999999999999999988775555444443
No 200
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=47.57 E-value=15 Score=30.94 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=25.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|.++ |..++|+..|||..|+|+.|+.|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8899999999999999999988876
No 201
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.51 E-value=79 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
..+++.+||+.++++.+|+...++.|.+.
T Consensus 49 ~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 49 KEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 37999999999999999999988888764
No 202
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=47.28 E-value=18 Score=31.73 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+-+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 22 Il~aa~~l~~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (206)
T 3kz9_A 22 LMEIALEVFAR-RGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVL 69 (206)
T ss_dssp HHHHHHHHHHH-SCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 44444444433 565 599999999999999999888765444444333
No 203
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=47.08 E-value=19 Score=29.04 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-..+..+||+.+++|.+|+++.++.|.+.
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~ 70 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAG 70 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35899999999999999999999988764
No 204
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=46.91 E-value=20 Score=33.78 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH--HHHHHhhc
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKEL--LEALVKVA 263 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL--~e~L~~l~ 263 (530)
....||.+||+..|||..||.+.++.- ...+..++
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lf 58 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALF 58 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTC
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHc
Confidence 345999999999999999999977652 23444444
No 205
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=46.64 E-value=16 Score=32.00 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 22 Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (208)
T 3cwr_A 22 IVGAAQRLLSS-GGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLV 69 (208)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 44444444443 464 599999999999999999988876444444443
No 206
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=46.58 E-value=22 Score=31.27 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=36.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 107 DWFPILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 107 R~~~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.+..+.+-+.+|+|-+ .+ + |..+||+..+++...|.+.+..|++.
T Consensus 6 ~~~~yAl~~L~~La~~-~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 6 SRLAVAIHILSLISMD-EK-T-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHHHHHHTC-SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhC-CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456677788888854 34 5 99999999999999999988888763
No 207
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=46.46 E-value=23 Score=30.31 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=26.1
Q ss_pred CCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEV--HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~--~VS~~TIrkRyKEL~e~ 258 (530)
+.|..+||+.+ ++|..++++|++.|.+.
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 78999999999 99999999999999874
No 208
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.25 E-value=7 Score=29.53 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=7.7
Q ss_pred EEcCCCceeecc
Q 047665 20 LICVSCGVVQAF 31 (530)
Q Consensus 20 ~VCt~CG~Vle~ 31 (530)
.+|..||.|.++
T Consensus 4 y~C~vCGyvYd~ 15 (54)
T 4rxn_A 4 YTCTVCGYIYDP 15 (54)
T ss_dssp EEETTTCCEECT
T ss_pred eECCCCCeEECC
Confidence 467777766664
No 209
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=46.21 E-value=21 Score=32.67 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..|+.-.+.+..++.
T Consensus 47 ~Il~aA~~l~~~-~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~ 96 (229)
T 3bni_A 47 RILDACADLLDE-VGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQ 96 (229)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHH
Confidence 344555544444 464 5999999999999999999888765555555544
No 210
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=46.17 E-value=24 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.160 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-++|..+||+.+|+|++|++.+++.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~ 60 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEA 60 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999874
No 211
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=45.94 E-value=22 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.+++|.+|+...++.|.+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999876
No 212
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=45.83 E-value=12 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+-+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 14 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 62 (196)
T 3col_A 14 KIQDAVAAIILA-EGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVY 62 (196)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHH
Confidence 445555555444 464 699999999999999999887775444444443
No 213
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=45.78 E-value=19 Score=35.36 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=27.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH-------HHHHHHHhhcccC
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK-------ELLEALVKVAQAL 266 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK-------EL~e~L~~l~~~l 266 (530)
+.|++|||+.+|||..|+++.+. +..+...+.++++
T Consensus 10 ~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~l 52 (344)
T 3kjx_A 10 PLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKEL 52 (344)
T ss_dssp CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999998873 4445555555543
No 214
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.70 E-value=20 Score=30.75 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|.++ |..++|+..|||..|+|+.|+.|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 5999999999999999999998876
No 215
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=45.65 E-value=14 Score=30.93 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.1
Q ss_pred CCCCCCC--CCeEEecCCCcEEcCCCce
Q 047665 2 PCTSCGS--KTLTREDISGSLICVSCGV 27 (530)
Q Consensus 2 ~Cp~CG~--~~iv~D~~~G~~VCt~CG~ 27 (530)
.||-|+. +++..++..|...|-.||.
T Consensus 39 ~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 39 LCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred ECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 5999986 4788888889999999983
No 216
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=45.21 E-value=25 Score=29.20 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.++++.+|+...++.|.+
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999876
No 217
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=44.85 E-value=7.9 Score=34.48 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=20.0
Q ss_pred CCCCCCCCCeEE-ecC--CCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTR-EDI--SGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~-D~~--~G~~VCt~CG~Vle 30 (530)
.||.||+--... |.. ...++|..||.+.+
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 599999843333 222 23589999999775
No 218
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=44.73 E-value=17 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|.++ |..++|+..|||..|+|+.|+.|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566 8999999999999999999998865
No 219
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=44.48 E-value=17 Score=32.14 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 31 Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 79 (217)
T 3mvp_A 31 ILQVAKDLFSD-KTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLK 79 (217)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCccccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 44455544444 564 6999999999999999999888765555544443
No 220
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=44.45 E-value=19 Score=31.19 Aligned_cols=48 Identities=8% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 15 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (191)
T 3on4_A 15 ILAVAEALIQK-DGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVIS 63 (191)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHH
Confidence 33344433333 464 5999999999999999999888765554444443
No 221
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=44.45 E-value=31 Score=30.79 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..
T Consensus 13 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~ 58 (202)
T 2d6y_A 13 IFEAAVAEFAR-HGIAGARIDRIAAEARANKQLIYAYYGNKGELFAS 58 (202)
T ss_dssp HHHHHHHHHHH-HTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 44444444333 564 6999999999999999999888754443333
No 222
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=44.32 E-value=24 Score=31.58 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 20 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~ 67 (221)
T 3c2b_A 20 VLDQALRLLVE-GGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMI 67 (221)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 44444444433 464 599999999999999999998876554444444
No 223
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=44.17 E-value=47 Score=27.99 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+|+.+||+.++++.+|++..++.|.+
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998887765
No 224
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=44.08 E-value=21 Score=31.42 Aligned_cols=47 Identities=6% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 9 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 9 ILRTAIDYIGE-YSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp HHHHHHHHHHH-SCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cChhhccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 44444444433 564 699999999999999999988876555444444
No 225
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=44.07 E-value=39 Score=27.28 Aligned_cols=34 Identities=3% Similarity=0.038 Sum_probs=26.9
Q ss_pred HHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 222 YlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
|+.....+...++.++|+.+|+|+.++.+.+++.
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4444434447999999999999999999888775
No 226
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=43.93 E-value=39 Score=26.82 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcC
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEFLNLKL 159 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~ 159 (530)
-+.|..|||..+|++...+.....+..+.|...+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988888888887543
No 227
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=43.88 E-value=22 Score=31.46 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+.+|+|.. .+..+|.++||+..++++.++++-+..|.+
T Consensus 19 ~L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~ 56 (149)
T 1ylf_A 19 ILSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ 56 (149)
T ss_dssp HHHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455542 345689999999999999999999888877
No 228
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=43.84 E-value=18 Score=32.38 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.5
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEAL 259 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L 259 (530)
.|+ ..|+.+||+.+|||..|+-..++.-.+.+
T Consensus 39 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 71 (214)
T 2zb9_A 39 EGTAQLTFERVARVSGVSKTTLYKWWPSKGALA 71 (214)
T ss_dssp HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred hCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHH
Confidence 464 69999999999999999988876533333
No 229
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=43.71 E-value=50 Score=30.04 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH---HHHHHHHhhcc
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK---ELLEALVKVAQ 264 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK---EL~e~L~~l~~ 264 (530)
..|+.+||+.+|||..|+.+..+ .+.+++.+++.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad 84 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVAD 84 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHH
Confidence 58999999999999999988766 44455555544
No 230
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=43.53 E-value=23 Score=32.29 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++..
T Consensus 44 Il~AA~~lf~e-~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~ 93 (214)
T 2guh_A 44 IVDAAGRAFAT-RPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDF 93 (214)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHH-cChhhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444333 565 59999999999999999999988766666666543
No 231
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=43.42 E-value=24 Score=25.57 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=27.6
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|..|||..++++..++......+.+.|+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 45889999999999999998888888888753
No 232
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=43.22 E-value=27 Score=30.82 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|..||.=+-++ .|+ ..|+.+||+.+|||..|+-..++.=.+.+..+
T Consensus 17 Il~aA~~lf~e-~G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~ 63 (192)
T 2fq4_A 17 ILSASYELLLE-SGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMDG 63 (192)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccccHHHHHHHcCCCHHHHHHHCCCHHHHHHHH
Confidence 44444443333 464 69999999999999999998887544433333
No 233
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=43.18 E-value=22 Score=31.75 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 35 Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~ 82 (222)
T 3bru_A 35 LIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALI 82 (222)
T ss_dssp HHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHH
Confidence 44455544444 565 699999999999999999988876555444444
No 234
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=43.05 E-value=23 Score=31.33 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 14 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 62 (216)
T 3s5r_A 14 LLLDAATTLFAE-QGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTII 62 (216)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHH
Confidence 344444444433 464 599999999999999999988775444444433
No 235
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.97 E-value=38 Score=27.65 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
+..+.-|+-.... ..+++.++|+.+|+|+.++.+.+++.
T Consensus 7 i~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFS-EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344445555443 47999999999999999999887764
No 236
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=42.96 E-value=27 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 13 Il~aA~~l~~~-~G~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~ 60 (194)
T 3dpj_A 13 IVAAADELFYR-QGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVI 60 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 33444444433 464 699999999999999999888765444444443
No 237
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=42.95 E-value=32 Score=30.71 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999998876
No 238
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=42.89 E-value=19 Score=31.72 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+.+|+|..-.+..+|.++||+..++++.++++-+..|.+.
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3445554322346899999999999999999988888664
No 239
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=42.51 E-value=26 Score=31.04 Aligned_cols=48 Identities=10% Similarity=0.100 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 15 ~Il~aA~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (216)
T 3f0c_A 15 LIINAAQKRFAH-YGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVI 63 (216)
T ss_dssp HHHHHHHHHHHH-HCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 344444444433 565 699999999999999999888775444444333
No 240
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=42.46 E-value=15 Score=32.02 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
...|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALA 64 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 6799999999999999999888776444444443
No 241
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=42.39 E-value=43 Score=28.49 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-.+++.+||+.++++.+|+++.++.|.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999998876
No 242
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.37 E-value=39 Score=27.54 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 112 vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
+..++-||--...+.++++.++|..++++...|.+.|++ .+|. .|..|+...
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~~~~~ 56 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ---QLGI-----SVLSWREDQ 56 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH---HHSS-----CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH---HHCc-----CHHHHHHHH
Confidence 344555555433337899999999999999999877663 4553 355565543
No 243
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=42.25 E-value=27 Score=29.74 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=31.2
Q ss_pred HHHHHHhcCCC-CChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 117 SYVVMRLDDKS-LPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 117 lYiACR~~~~P-~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
||.+...++-| .|..|||+.++++..++.+....|.+.
T Consensus 31 il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~ 69 (123)
T 3r0a_A 31 VMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK 69 (123)
T ss_dssp HHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45555566667 999999999999999999998888763
No 244
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=42.23 E-value=19 Score=34.26 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.++||+..++|+.|++..++.+++.|.
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999887653
No 245
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=42.18 E-value=64 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+|+.+||+.++++.+|+...++.|.+
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34699999999999999999998887766
No 246
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=42.07 E-value=34 Score=30.46 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998876
No 247
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=42.02 E-value=16 Score=33.18 Aligned_cols=28 Identities=25% Similarity=0.647 Sum_probs=19.1
Q ss_pred CCCCCCCCCeEEecC--CC-cEEcCCCceee
Q 047665 2 PCTSCGSKTLTREDI--SG-SLICVSCGVVQ 29 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~--~G-~~VCt~CG~Vl 29 (530)
.||.||....+..+. .+ -.+|..||.+.
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred cCchhCCccccccccCCCCcceECCCCCCcc
Confidence 599999976554432 22 46999999543
No 248
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=41.97 E-value=32 Score=27.20 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
-+.|..|||..++++..++.+.+.+|.+.
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999998888774
No 249
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=41.89 E-value=25 Score=31.23 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 18 Il~aA~~lf~~-~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 18 VLEVAYDTFAA-EGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp HHHHHHHHHHH-TCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 33344433333 456899999999999999999988776444444444
No 250
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=41.88 E-value=20 Score=31.27 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .| ...|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 12 Il~aa~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 59 (199)
T 3qbm_A 12 VVAQAAALFNV-SGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAF 59 (199)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHH
Confidence 34444444433 46 4699999999999999999887765444444443
No 251
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=41.86 E-value=20 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 213 PMPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 213 P~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
-.-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..
T Consensus 13 r~~il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 61 (196)
T 3he0_A 13 RDQILAAAEQLIAE-SGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEE 61 (196)
T ss_dssp HHHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHH
Confidence 34455555555444 364 6999999999999999998776654444333
No 252
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=41.79 E-value=59 Score=29.43 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999998876
No 253
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=41.78 E-value=39 Score=28.64 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+|+.+||+.++++.+|+++.++.|.+.
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 456899999999999999999999998775
No 254
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.67 E-value=51 Score=26.58 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 114 GACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 114 AAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
.+.-||--...+-++++.++|..++++...|.+.+++. +|. .|..|+.+.
T Consensus 6 ~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~---~g~-----s~~~~~~~~ 55 (103)
T 3lsg_A 6 LIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN---FGI-----PFQDYLLQK 55 (103)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH---HSS-----CHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH---HCc-----CHHHHHHHH
Confidence 34445554434458999999999999999998776643 443 355565443
No 255
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=41.65 E-value=37 Score=30.72 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.++|+.+||..+|+|..|+.+-+++|.+.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56899999999999999999999998874
No 256
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=41.49 E-value=29 Score=31.04 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 17 Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~~ 63 (224)
T 1t33_A 17 LIAAALAQFGE-YGLHATTRDIAALAGQNIAAITYYFGSKEDLYLACA 63 (224)
T ss_dssp HHHHHHHHHHH-HGGGSCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHhcCCHHHHHHHHH
Confidence 44444444443 343399999999999999999998876555444443
No 257
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=41.40 E-value=35 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999988876
No 258
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=41.35 E-value=18 Score=32.00 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (193)
T 2dg8_A 12 ERILAATLDLIAE-EGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAF 61 (193)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hChhhccHHHHHHHhCCCchhhheeCCCHHHHHHHHH
Confidence 3455555555444 454 699999999999999999988776555544444
No 259
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.30 E-value=19 Score=34.53 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.+|||+.+|+|+.|++.++...++.|.
T Consensus 211 ~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 211 KGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988877664
No 260
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=41.26 E-value=41 Score=27.48 Aligned_cols=52 Identities=12% Similarity=0.321 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 111 ~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
.+..+.-||--.. .-++++.++|..++++...|.+.|++ .+|. .|..|+...
T Consensus 6 ~i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~~~~~ 57 (108)
T 3oou_A 6 IIQNVLSYITEHF-SEGMSLKTLGNDFHINAVYLGQLFQK---EMGE-----HFTDYLNRY 57 (108)
T ss_dssp HHHHHHHHHHHHT-TSCCCHHHHHHHHTSCHHHHHHHHHH---HHSS-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHH---HHCc-----CHHHHHHHH
Confidence 4445555665443 44899999999999999999877664 3453 355565443
No 261
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=41.09 E-value=36 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
+.-|+-....+..+++.++|+.+|+|+.++.+.+++.
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444433367999999999999999998887764
No 262
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=41.08 E-value=14 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+-+..+ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 13 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (195)
T 3pas_A 13 FLEATVREVAD-HGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATF 60 (195)
T ss_dssp HHHHHHHHHHH-HHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHH
Confidence 33344433333 35 3599999999999999999988775444444443
No 263
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=41.03 E-value=97 Score=26.04 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+|+.+||+.++++.+|+...++.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999998888875
No 264
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.98 E-value=49 Score=26.95 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 112 LIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 112 vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
+..++-||.- ....|+++.++|..++++...|.+.|++ .+|. .|..|+...
T Consensus 4 i~~~~~~i~~-~~~~~~~~~~lA~~~~~s~~~l~r~fk~---~~G~-----s~~~~~~~~ 54 (108)
T 3mn2_A 4 VRQVEEYIEA-NWMRPITIEKLTALTGISSRGIFKAFQR---SRGY-----SPMAFAKRV 54 (108)
T ss_dssp HHHHHHHHHH-HTTSCCCHHHHHHHHTCCHHHHHHHHHH---HTSS-----CHHHHHHHH
T ss_pred HHHHHHHHHH-cccCCCCHHHHHHHHCCCHHHHHHHHHH---HhCc-----CHHHHHHHH
Confidence 3444455543 3455799999999999999999887664 3443 456666543
No 265
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=40.94 E-value=23 Score=31.51 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=28.0
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 33 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (218)
T 3gzi_A 33 RPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMI 69 (218)
T ss_dssp SCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 565 599999999999999999988875444444443
No 266
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=40.90 E-value=38 Score=28.26 Aligned_cols=27 Identities=11% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 047665 232 VKIENVAKEV-HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 232 ~t~~eIA~~~-~VS~~TIrkRyKEL~e~ 258 (530)
+|+.+|++.+ ++|.+|+.+++++|.+.
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~ 70 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDS 70 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHC
Confidence 4499999999 99999999999999874
No 267
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=40.87 E-value=19 Score=31.47 Aligned_cols=49 Identities=6% Similarity=0.112 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
-|..||+-+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++.
T Consensus 18 ~Il~aA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (191)
T 4aci_A 18 EILEGARRCFAE-HGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALAR 67 (191)
T ss_dssp HHHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHH
Confidence 344444444333 354 5999999999999999999988765555554443
No 268
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=40.82 E-value=1.3e+02 Score=25.16 Aligned_cols=28 Identities=4% Similarity=0.097 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~ 83 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 7999999999999999999998888774
No 269
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=40.82 E-value=23 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH-------HHHHHHHhhcccCCC
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYK-------ELLEALVKVAQALPW 268 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyK-------EL~e~L~~l~~~lpW 268 (530)
-+.|++|||+.+|||..|+++.+. +..+...+.++++-|
T Consensus 8 ~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY 53 (366)
T 3h5t_A 8 QYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGY 53 (366)
T ss_dssp CTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 458899999999999999998875 344555555555544
No 270
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=40.75 E-value=15 Score=36.17 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeeccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFD 32 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~ 32 (530)
.||.||++.... ...-..+|.+||.+.-.+
T Consensus 109 fC~~CG~~~~~~-~~~~~~~C~~C~~~~yp~ 138 (269)
T 1vk6_A 109 YCGYCGHEMYPS-KTEWAMLCSHCRERYYPQ 138 (269)
T ss_dssp BCTTTCCBEEEC-SSSSCEEESSSSCEECCC
T ss_pred ccccCCCcCccC-CCceeeeCCCCCCEecCC
Confidence 599999975443 233467999999986643
No 271
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=40.69 E-value=18 Score=31.28 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHH-HHHHHHhhcc
Q 047665 215 PVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKE-LLEALVKVAQ 264 (530)
Q Consensus 215 sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKE-L~e~L~~l~~ 264 (530)
-|..||+=+..+ .| ..+|+.+||+.+|||..|+-..++. -.+.+..++.
T Consensus 10 ~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~ 60 (191)
T 1sgm_A 10 KILHTASRLSQL-QGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVT 60 (191)
T ss_dssp HHHHHHHHHHHH-HCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHH
Confidence 344455544444 45 4699999999999999999988875 6665555554
No 272
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=40.58 E-value=38 Score=29.77 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-..++.+|++.+++|.+|+..+++.|.+.
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~ 64 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEH 64 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 36899999999999999999999999873
No 273
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.48 E-value=7.2 Score=29.15 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=9.0
Q ss_pred cEEcCCCceeecc
Q 047665 19 SLICVSCGVVQAF 31 (530)
Q Consensus 19 ~~VCt~CG~Vle~ 31 (530)
..+|+.||.|.++
T Consensus 3 ~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 3 IYVCTVCGYEYDP 15 (52)
T ss_dssp CEECSSSCCCCCT
T ss_pred cEEeCCCCeEEcC
Confidence 3578888877664
No 274
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=40.45 E-value=47 Score=30.21 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999998876
No 275
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=40.30 E-value=23 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=25.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|.++ |..++|+..|||..|+|+.|+.|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4567 7999999999999999999988765
No 276
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=40.28 E-value=22 Score=31.22 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 16 Il~aA~~lf~~-~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (203)
T 3b81_A 16 LANKIWDIFIA-NGYENTTLAFIINKLGISKGALYHYFSSKEECADAAI 63 (203)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 44444444444 464 699999999999999999887765444444443
No 277
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=40.26 E-value=17 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
+|+.+||+.+|||..||++-+..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 78999999999999999987654
No 278
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=40.09 E-value=21 Score=31.04 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=20.6
Q ss_pred CCCCCCCCCeEEecC---------CCcEEcCCCceeeccc
Q 047665 2 PCTSCGSKTLTREDI---------SGSLICVSCGVVQAFD 32 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~---------~G~~VCt~CG~Vle~~ 32 (530)
.||.||+...++=.. +-.++|.+||....++
T Consensus 74 ~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 74 ECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 699999865443211 1247999999876554
No 279
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=39.98 E-value=63 Score=27.08 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHhhCCCCCCCchhHHHH--HHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHH
Q 047665 72 KLIDELTFKLDLTGQRSIQIKNMIDKITDGEFGLGDWFPILIG--ACSYVVMRLDDKSLPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 72 ~~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l~rGR~~~~vaA--AclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
..++.+|+.+|++..-+ ..++|....+.| .+.|++-+. ...|+.+|+..+|-|..++..+++
T Consensus 9 ~I~~~Va~~f~v~~~dl--------------~s~~R~~~i~~aRqiAmYL~r~~--t~~Sl~~IG~~fgRDHsTV~ha~~ 72 (101)
T 3pvv_A 9 TIMAATAEYFDTTVEEL--------------RGPGKTRALAQSRQIAMYLCREL--TDLSLPKIGQAFGRDHTTVMYAQR 72 (101)
T ss_dssp HHHHHHHHHTTCCHHHH--------------HSSCCCHHHHHHHHHHHHHHHHH--CCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHH--------------hCCCCCchhhHHHHHHHHHHHHH--hCCCHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666664211 124554444333 456665333 578899999999999999999999
Q ss_pred HHHHHhhh
Q 047665 150 RVVEFLNL 157 (530)
Q Consensus 150 ~L~k~L~i 157 (530)
++.+.+..
T Consensus 73 ki~~~~~~ 80 (101)
T 3pvv_A 73 KILSEMAE 80 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998875
No 280
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=39.78 E-value=94 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.062 Sum_probs=25.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.+..+|+.+||+.++++.+|+...++.|.+
T Consensus 51 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 51 QAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp STTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 445689999999999999999998777765
No 281
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=39.75 E-value=22 Score=28.19 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
..++.+||+.++++.+|+...++.|.+.
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 6899999999999999999999988775
No 282
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=39.63 E-value=26 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||.=+-++ .|+..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 21 Il~aA~~lf~~-~G~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 67 (199)
T 2rek_A 21 IIEAAAAEVAR-HGADASLEEIARRAGVGSATLHRHFPSRWGLLQAVF 67 (199)
T ss_dssp HHHHHHHHHHH-HGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHH
Confidence 33344433333 344789999999999999999888775444444443
No 283
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=39.39 E-value=49 Score=25.69 Aligned_cols=29 Identities=14% Similarity=0.120 Sum_probs=26.1
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
-|.|..|||+.++++...+.+.+..|.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999998888764
No 284
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=39.38 E-value=31 Score=30.04 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|..||+=+.++ .|+..|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 14 Il~aA~~lf~~-~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~ 59 (190)
T 3jsj_A 14 LLEAAAALTYR-DGVGIGVEALCKAAGVSKRSMYQLFESKDELLAAS 59 (190)
T ss_dssp HHHHHHHHHHH-HCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHH-hCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 44444444433 35339999999999999999988776544443333
No 285
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=39.19 E-value=21 Score=31.09 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=29.7
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
.|+ ..|+.+||+.+|||..|+-..++.-.+.+..++..
T Consensus 23 ~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 61 (186)
T 2jj7_A 23 RGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKK 61 (186)
T ss_dssp HHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHH
T ss_pred cCCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHH
Confidence 354 59999999999999999999988655555555443
No 286
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=39.17 E-value=19 Score=32.99 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+-+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 49 Il~aA~~lf~e-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 96 (236)
T 3q0w_A 49 ILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLL 96 (236)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHH
Confidence 44444444433 565 699999999999999999888775444444443
No 287
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=38.90 E-value=58 Score=26.45 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 219 AVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 219 AAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
+.-|+.... ..++++.++|+.+|+|+.++.+.+++.
T Consensus 7 ~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 7 VEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344554443 446999999999999999999887764
No 288
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=38.85 E-value=1.2e+02 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=24.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.+|+.+||+.++++.+|+...++.|.+
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 599999999999999999998888766
No 289
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=38.71 E-value=44 Score=31.44 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999998876
No 290
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=38.68 E-value=32 Score=31.07 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 39 ~Il~aA~~lf~~-~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~ 87 (221)
T 3g7r_A 39 RLLGTATRIFYA-EGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYL 87 (221)
T ss_dssp HHHHHHHHHHHH-HCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 344444444443 464 599999999999999999888765444444443
No 291
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=38.61 E-value=24 Score=31.98 Aligned_cols=46 Identities=7% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 10 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~~ 56 (228)
T 3nnr_A 10 ILLSSLELFND-KGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEI 56 (228)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHH-hChhhcCHHHHHHHhCCCCccchhcCCCHHHHHHHH
Confidence 44444444433 464 59999999999999999998877544433333
No 292
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=38.61 E-value=16 Score=32.92 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=26.3
Q ss_pred cC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 228 NG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 228 ~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
.| ..+|+.+||+.+|||.+|+-..|+.-.+.+..
T Consensus 36 ~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~ 70 (185)
T 3o60_A 36 RTFESISIKDLCEQARVSRATFYRHHKEIIQVIEV 70 (185)
T ss_dssp CCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHH
T ss_pred CCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 45 46999999999999999998877654444433
No 293
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.54 E-value=39 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+++.+||+.++++.+|+...++.|.+.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~ 70 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999988888763
No 294
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=38.49 E-value=37 Score=27.83 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.++++.+|+...++.|.+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3579999999999999999999999875
No 295
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=38.38 E-value=25 Score=31.44 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.|..||+-+..+ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 16 ~Il~aA~~l~~e-~G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~ 64 (198)
T 3cjd_A 16 KLIDLAEAQIEA-EGLASLRARELARQADCAVGAIYTHFQDLNALTLEVN 64 (198)
T ss_dssp HHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CChhhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHH
Confidence 345555544444 45 4699999999999999999888775555444443
No 296
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=38.29 E-value=46 Score=28.50 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=24.1
Q ss_pred HHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 224 VVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 224 Aa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
+++++....|+.+|++.+|+|..||.+--+.|
T Consensus 51 Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 51 VAKMLTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 33444445999999999999999997754444
No 297
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=38.16 E-value=21 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.||.|+.. ++.+.....+.|..||...=
T Consensus 27 wCP~C~~~-~~~~~~~~~v~C~~C~~~FC 54 (86)
T 2ct7_A 27 WCAQCSFG-FIYEREQLEATCPQCHQTFC 54 (86)
T ss_dssp CCSSSCCC-EECCCSCSCEECTTTCCEEC
T ss_pred ECcCCCch-heecCCCCceEeCCCCCccc
Confidence 49988874 34454455678888887754
No 298
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.14 E-value=50 Score=28.88 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEV-HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~-~VS~~TIrkRyKEL~e~ 258 (530)
.-..++.|+++.+ ++|..|+..++++|.+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~ 67 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEAD 67 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC
Confidence 4478999999999 99999999999999874
No 299
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=38.04 E-value=20 Score=31.15 Aligned_cols=47 Identities=6% Similarity=0.032 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..+
T Consensus 14 ~Il~aa~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 61 (197)
T 3rd3_A 14 HLLDTGYRIMAV-KGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQAL 61 (197)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHH
Confidence 344455444444 464 69999999999999999987766444433333
No 300
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=38.02 E-value=16 Score=32.13 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.8
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 36 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 72 (203)
T 3mnl_A 36 GGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSAL 72 (203)
T ss_dssp HHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHH
Confidence 354 599999999999999999988876555444444
No 301
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=37.97 E-value=71 Score=29.55 Aligned_cols=30 Identities=7% Similarity=0.150 Sum_probs=27.6
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|+++++.+.
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 368899999999999999999999999885
No 302
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.92 E-value=25 Score=26.38 Aligned_cols=33 Identities=9% Similarity=0.173 Sum_probs=28.5
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
-..|..|||..+|++...+.....+..+.|...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998888888877653
No 303
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.88 E-value=48 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
-++|..|||..++++...+.+.+.+|.+.
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 47999999999999999999998888764
No 304
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=37.84 E-value=27 Score=31.16 Aligned_cols=43 Identities=12% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEAL 259 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L 259 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~ 51 (212)
T 3rh2_A 8 IIQASLELFNE-HGERTITTNHIAAHLDISPGNLYYHFRNKEDII 51 (212)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 33344433333 465 59999999999999999988876544333
No 305
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=37.77 E-value=16 Score=32.32 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 214 MPVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.-|..||+=+.....| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 77 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLI 77 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHH
Confidence 3344444442222346 4699999999999999999887765444444443
No 306
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.56 E-value=32 Score=31.33 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 45 Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~ 92 (225)
T 2id3_A 45 VLLAAGDALAA-DGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLL 92 (225)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 33344333333 464 599999999999999999988875444444333
No 307
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=37.43 E-value=31 Score=28.20 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=24.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..+..+||+.++++.+|+...++.|.+
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 589999999999999999999988865
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.35 E-value=55 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEV-----HCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~-----~VS~~TIrkRyKEL~e 257 (530)
...|..+|++.+ +++.+||.+-++.|.+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 468999999999 9999999888777765
No 309
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=37.34 E-value=36 Score=30.22 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.=.+
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~ 60 (204)
T 2ibd_A 19 LLDIAATLFAE-RGLRATTVRDIADAAGILSGSLYHHFDSKES 60 (204)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHTTSCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCchhHHHhcCCHHH
Confidence 33344433333 464 599999999999999999887764333
No 310
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=37.23 E-value=31 Score=28.62 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..++.++|+.++++.+|+.+.++.|.+
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 689999999999999999999999988
No 311
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=37.19 E-value=1.2e+02 Score=25.15 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+++.+||+.++++.+|+...++.|.+.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~ 77 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHC
Confidence 457999999999999999999998888774
No 312
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=37.19 E-value=17 Score=33.59 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=22.0
Q ss_pred CCCC--CCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTS--CGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~--CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.||. |+.. +.+...|.+.|..||...+
T Consensus 45 aC~~~~CnKK--v~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKK--VIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCB--CEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCc--cccCCCCeEECCCCCCcCC
Confidence 5999 9886 4466789999999998765
No 313
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=37.18 E-value=40 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
..+|+.+||+.++++.+|+...++.|.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 74 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 57999999999999999999988888763
No 314
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=37.18 E-value=1.5e+02 Score=24.37 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=25.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~ 72 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6999999999999999999999888774
No 315
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=37.08 E-value=17 Score=31.14 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 20 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (170)
T 3egq_A 20 KPPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAV 56 (170)
T ss_dssp SCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 454 599999999999999999988775444444433
No 316
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=37.06 E-value=35 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.2
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 26 ~G~~~~s~~~IA~~aGvs~~t~Y~~F~s 53 (210)
T 3vib_A 26 KGIARTSLNEIAQAAGVTRDALYWHFKN 53 (210)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred hCcccCCHHHHHHHHCcCHHHHHHHCCC
Confidence 464 699999999999999999887764
No 317
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=36.89 E-value=24 Score=31.15 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 217 VVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 217 AAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++.
T Consensus 14 l~aA~~lf~~-~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 14 ITTTCNLYRT-HHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp HHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3344333333 464 5899999999999999999888765554444443
No 318
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=36.85 E-value=25 Score=34.15 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
...|.+|||+..++|+.|++..++.+++.|.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999888664
No 319
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=36.77 E-value=41 Score=29.35 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.=.+
T Consensus 8 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~t~Y~~F~sK~~ 49 (190)
T 3vpr_A 8 ILEEAAKLFTE-KGYEATSVQDLAQALGLSKAALYHHFGSKEE 49 (190)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33344433333 464 699999999999999999887764333
No 320
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=36.73 E-value=19 Score=35.09 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH-------HHHHHHHhhcccCCC
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK-------ELLEALVKVAQALPW 268 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK-------EL~e~L~~l~~~lpW 268 (530)
+.|++|||+.+|||..|+++.+. +..+...+.++++-|
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY 46 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGY 46 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCC
Confidence 47899999999999999998876 344455555555434
No 321
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=36.68 E-value=22 Score=31.70 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .| ...|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 16 Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~ 64 (212)
T 2ras_A 16 LVDVAQAIVEE-RGGAGLTLSELAARAGISQANLSRYFETREDLMEAIAD 64 (212)
T ss_dssp HHHHHHHHHHH-HTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 44444444433 45 46999999999999999998877765554444443
No 322
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=36.63 E-value=92 Score=26.11 Aligned_cols=27 Identities=7% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.+|+.+||+.++++.+|+...++.|.+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 799999999999999999998888776
No 323
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=36.60 E-value=9.6 Score=32.93 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.2
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
.|+ .+|+.+||+.+|||.+|+-..++.-.+.+..
T Consensus 28 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (177)
T 3kkc_A 28 NDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKE 62 (177)
T ss_dssp SCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHH
T ss_pred CChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHH
Confidence 454 6999999999999999998877654444333
No 324
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=36.56 E-value=42 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.058 Sum_probs=23.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKELLEAL 259 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKEL~e~L 259 (530)
.|..+||+..||+..||.+.++......
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~~~~ 66 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNEDKLR 66 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 6899999999999999999887766543
No 325
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=36.53 E-value=85 Score=26.50 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=25.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~ 81 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999988887763
No 326
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=36.42 E-value=46 Score=30.57 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+.+++|.+
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4689999999999999999999998876
No 327
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=36.40 E-value=11 Score=35.90 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=20.8
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeeccc
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQAFD 32 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle~~ 32 (530)
.|++||.... .......+|.+||.+....
T Consensus 12 ~Cw~C~~~~~--~~~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 12 RCWNCGGPWG--PGREDRFFCPQCRALQAPD 40 (207)
T ss_dssp BCSSSCCBCC--SSCSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCcc--cccccccccccccccCCCC
Confidence 5999997521 1235678999999988743
No 328
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=36.26 E-value=1.1e+02 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+|+.+||+.++++.+|+...++.|.+
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998887765
No 329
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=36.19 E-value=54 Score=29.58 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=26.9
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.|+|..+||+.+|++...+.|..+++.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 68999999999999999999999999775
No 330
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=36.13 E-value=1.1e+02 Score=26.57 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+|+.+||+.++++.+|+...++.|.+.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~ 86 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999998888763
No 331
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.09 E-value=22 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkR 251 (530)
.||.++|+.+|||..||.+.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~w 30 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQW 30 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHH
Confidence 48999999999999999884
No 332
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.01 E-value=55 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=28.1
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|..|||..++++...+.....++.+.|+..
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34899999999999999999999888888753
No 333
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=35.97 E-value=18 Score=31.38 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 11 ~~Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (183)
T 1zk8_A 11 QKIVETAAEIADA-NGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLG 60 (183)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHH
Confidence 3455555544444 464 599999999999999999877765444444443
No 334
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=35.95 E-value=57 Score=27.16 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 117 lYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
+++..+..+.|.++.+||..++++...+.+.+++|.+.
T Consensus 40 L~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~ 77 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC
Confidence 33333444448999999999999999999999888775
No 335
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=35.84 E-value=25 Score=25.35 Aligned_cols=23 Identities=9% Similarity=-0.033 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRy 252 (530)
..+|+.++|+.+|+|..|+.+-.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999997743
No 336
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=35.82 E-value=1.3e+02 Score=29.47 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=27.2
Q ss_pred cCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 124 DDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 124 ~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..-+++..|||+.++++..+++|....+.+.
T Consensus 18 ~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~ 48 (315)
T 2w48_A 18 YEQDMTQAQIARELGIYRTTISRLLKRGREQ 48 (315)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4456999999999999999999999888764
No 337
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=35.81 E-value=41 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++
T Consensus 21 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 21 RISTVGIELFTE-QGFDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp HHHHHHHHHHHH-HCTTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHHH-cCcccCCHHHHHHHhCCCcchHhhhCC
Confidence 344455544443 464 69999999999999999977654
No 338
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=35.64 E-value=63 Score=28.92 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhc---CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 112 LIGACSYVVMRLD---DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 112 vaAAclYiACR~~---~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
-++..+..-+... ..|+|..+||+.+|++...+.|..+++.+.
T Consensus 151 Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 151 RVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp HHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3444444333333 358999999999999999999999999875
No 339
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=35.63 E-value=1.4e+02 Score=26.01 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+|+.+||+.++++.+|+...++.|.+
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 45699999999999999999998888776
No 340
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.59 E-value=39 Score=29.64 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 215 PVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
-|..||+=+.++ .|+..|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 19 ~Il~aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 65 (194)
T 2q24_A 19 KILAAAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFPTREALIEAA 65 (194)
T ss_dssp HHHHHHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHH
Confidence 344444444433 45459999999999999999988776544433333
No 341
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=35.58 E-value=49 Score=27.20 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
...+++.++|+.+|+|+.++.+.+++.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346999999999999999999888764
No 342
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=35.48 E-value=23 Score=32.28 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..+
T Consensus 34 ~Il~aA~~lf~~-~G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~ 81 (230)
T 2iai_A 34 TLLSVAVQVFIE-RGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRA 81 (230)
T ss_dssp CHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHH
Confidence 355555555544 464 69999999999999999987766444433333
No 343
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=35.22 E-value=51 Score=29.35 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.5
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 28 ~G~~~ts~~~IA~~aGvsk~tlY~~F~s 55 (211)
T 3bhq_A 28 KGYDGTSMEEIATKAGASKQTVYKHFTD 55 (211)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 464 599999999999999999888764
No 344
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=35.15 E-value=36 Score=26.62 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
-.+|+.++|+.+|||..||.+-
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4589999999999999999853
No 345
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=35.07 E-value=49 Score=30.17 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++|+.+||..+|+|..|+.+-+++|.+.
T Consensus 176 ~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp ECCSCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 367889999999999999999988888764
No 346
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=35.05 E-value=33 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
.-|..||+=+..+ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 5 ~~Il~aA~~l~~~-~G~~~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~~~~~ 55 (209)
T 3bqy_A 5 ARTVQTALDLLNE-SGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAE 55 (209)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCcccCCHHHHHHHhCCCcchHHhhcCCHHHHHHHHHH
Confidence 4456666666555 454 6999999999999999999888765554444443
No 347
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=34.95 E-value=42 Score=29.67 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.
T Consensus 12 Il~aA~~lf~~-~G~~~ts~~~IA~~aGvs~gtlY~~F~s 50 (197)
T 2gen_A 12 ILQAALACFSE-HGVDATTIEMIRDRSGASIGSLYHHFGN 50 (197)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHHCCChHHHHHHCCC
Confidence 44444444333 464 699999999999999999887764
No 348
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=34.83 E-value=40 Score=31.09 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
-|..||+-+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 27 ~Il~aA~~lf~~-~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~av~ 75 (231)
T 2zcx_A 27 AILDAARELGTE-RGIREITLTDIAATVGMHKSALLRYFETREQIFLKIT 75 (231)
T ss_dssp HHHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 355555544444 464 699999999999999999887765444444443
No 349
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=34.81 E-value=25 Score=32.14 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..|+.-.+.+..++
T Consensus 18 Il~AA~~l~~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~ 65 (231)
T 2qib_A 18 LIGVALDLFSR-RSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAAL 65 (231)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 44444444433 565 699999999999999999988775444444333
No 350
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=34.75 E-value=66 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|+++++.+.
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 367899999999999999999999999874
No 351
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=34.72 E-value=10 Score=33.74 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
...|.+|||+..|+|+.|+++++....+.|-+.
T Consensus 150 ~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 150 GDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999998888777554
No 352
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=34.70 E-value=26 Score=30.79 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 13 Il~AA~~l~~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~ 61 (195)
T 3frq_A 13 VLEAATVVLKR-CGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMME 61 (195)
T ss_dssp HHHHHHHHHHH-HHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 44444433333 354 6999999999999999999888765555554443
No 353
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.67 E-value=41 Score=26.85 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=28.4
Q ss_pred HhcCCCCChHHHHHHhCCCHHH-HHHHHHHHHHH
Q 047665 122 RLDDKSLPISEVASVLNCDVYE-LGRMITRVVEF 154 (530)
Q Consensus 122 R~~~~P~TL~DIA~~~~vd~~~-Lgr~~k~L~k~ 154 (530)
..++-+.++.|||..++++... +.+..++|.+.
T Consensus 25 ~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp HHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 3455579999999999999999 99999888775
No 354
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.66 E-value=51 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.021 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+-.+|+.+||+.++++.+|+...++.|.+.
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~ 79 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHC
Confidence 4457999999999999999999998888763
No 355
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=34.59 E-value=34 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.2
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 25 ~G~~~~t~~~Ia~~Agvs~gt~Y~yF~s 52 (204)
T 3anp_C 25 RGFQETTATEIAKAAHVSRGTFFNYYPY 52 (204)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred cCcccccHHHHHHHcCCchHHHHHHcCC
Confidence 464 599999999999999999887764
No 356
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=34.44 E-value=47 Score=27.53 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=25.9
Q ss_pred CCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEV-HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~-~VS~~TIrkRyKEL~e~ 258 (530)
..++.+||+.+ +++.+|+..+++.|.+.
T Consensus 35 ~~~~~eLa~~l~~is~~tvs~~L~~Le~~ 63 (112)
T 1z7u_A 35 TKRNGELMRALDGITQRVLTDRLREMEKD 63 (112)
T ss_dssp CBCHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 68999999999 99999999999998874
No 357
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.23 E-value=54 Score=24.84 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=26.7
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHHhh
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEFLN 156 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~ 156 (530)
-+.|..|||..+|++...+.....+..+.|.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999887777777776
No 358
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.20 E-value=13 Score=31.90 Aligned_cols=22 Identities=18% Similarity=0.575 Sum_probs=0.0
Q ss_pred CCCCCCCCCeEEecCCCcE-EcCCCc
Q 047665 2 PCTSCGSKTLTREDISGSL-ICVSCG 26 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~-VCt~CG 26 (530)
+|.+||. .+....-.. .|..||
T Consensus 75 ~C~~CG~---~~e~~~~~~~~CP~Cg 97 (119)
T 2kdx_A 75 ECKDCSH---VFKPNALDYGVCEKCH 97 (119)
T ss_dssp ECSSSSC---EECSCCSTTCCCSSSS
T ss_pred EcCCCCC---EEeCCCCCCCcCcccc
No 359
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=34.14 E-value=51 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 047665 222 VFVVELNGVSVKIENVAKEVHCTVVTCRKRYKEL 255 (530)
Q Consensus 222 YlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL 255 (530)
+-++++.....|+.+||+.+|+|..||.+--+.|
T Consensus 66 ~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~L 99 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISRVKRSL 99 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444345999999999999999997644433
No 360
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=34.07 E-value=21 Score=31.46 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
...|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 33 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (215)
T 3e7q_A 33 QGASVRKICAEAGVSVGLINHHYDGKDALVAEAY 66 (215)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3699999999999999999887765554444444
No 361
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.03 E-value=28 Score=25.27 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkR 251 (530)
.+|+.++|+.+|+|..|+.+-
T Consensus 18 g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 579999999999999999764
No 362
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=33.97 E-value=31 Score=26.20 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=34.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCCccCcccccccChhHHHHHhHHHHH
Q 047665 232 VKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTVKNVLKNAPFVMNYMEMKSM 293 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~~~v~~knl~~~~pdIi~~~e~~~~ 293 (530)
++.+|||+.+|+|..||.+..++ ..+|=.-++..+. .=...+|..+++....
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~---------g~fP~piklG~~~-~w~~~ev~~Wl~~~~~ 62 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS---------GDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH---------HHCCCSEESSSCE-EEEHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC---------CCCCCCEEeCCCe-EEeHHHHHHHHHHHHH
Confidence 78999999999999999776653 2344312344444 3337788887776543
No 363
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.89 E-value=15 Score=30.07 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.4
Q ss_pred CcEEcCCCceeeccc
Q 047665 18 GSLICVSCGVVQAFD 32 (530)
Q Consensus 18 G~~VCt~CG~Vle~~ 32 (530)
..++|+.||.|.++.
T Consensus 26 ~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEA 40 (81)
T ss_dssp CEEEETTTCCEEETT
T ss_pred ceEEeCCCCEEEcCC
Confidence 468999999998853
No 364
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=33.86 E-value=53 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+++||..+|+|..|+.+-+++|.+
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999988876
No 365
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.80 E-value=28 Score=26.14 Aligned_cols=23 Identities=9% Similarity=-0.072 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
.+|+.++|+.+||+..||.+..+
T Consensus 21 glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999987543
No 366
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.78 E-value=28 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|+|..||.+-
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4589999999999999999763
No 367
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=33.62 E-value=52 Score=29.67 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|..+++.+.
T Consensus 176 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 176 EIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467899999999999999999999999886
No 368
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=33.60 E-value=25 Score=34.36 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH-------HHHHHHHhhcccCCC
Q 047665 232 VKIENVAKEVHCTVVTCRKRYK-------ELLEALVKVAQALPW 268 (530)
Q Consensus 232 ~t~~eIA~~~~VS~~TIrkRyK-------EL~e~L~~l~~~lpW 268 (530)
.|++|||+.+|||..|+++.+. +..+...+.++++-|
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY 44 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHY 44 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999999886 344445555555433
No 369
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.58 E-value=41 Score=30.75 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=37.2
Q ss_pred CchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 212 RPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 212 ~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
+..-|..||+=+..+ .| .+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 12 ~r~~Il~aA~~l~~~-~G-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 62 (213)
T 2g7g_A 12 DRERIAEAALELVDR-DG-DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRH 62 (213)
T ss_dssp CHHHHHHHHHHHHHH-HS-SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-cC-CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHHHH
Confidence 345567777766655 46 9999999999999999998877765554444443
No 370
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=33.58 E-value=61 Score=26.63 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 111 ~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
.+..+.-||- .....|+++.++|..++++...|.+.|++ .+|. .|..|+.+.
T Consensus 8 ~i~~~~~~i~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~~~~~ 59 (113)
T 3oio_A 8 KLTEAVSLME-ANIEEPLSTDDIAYYVGVSRRQLERLFKQ---YLGT-----VPSKYYLEL 59 (113)
T ss_dssp HHHHHHHHHH-TCSSSCCCHHHHHHHHTSCHHHHHHHHHH---HTSS-----CHHHHHHHH
T ss_pred HHHHHHHHHH-hhhcCCCCHHHHHHHHCcCHHHHHHHHHH---HHCc-----CHHHHHHHH
Confidence 3444445553 33456799999999999999999877664 3443 355666543
No 371
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.57 E-value=32 Score=31.43 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+-+.++ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 21 il~aA~~l~~~-~G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~a~~ 68 (216)
T 2oi8_A 21 IKDHAWEQIAT-AGASALSLNAIAKRMGMSGPALYRYFDGRDELITELI 68 (216)
T ss_dssp HHHHHHHHHHH-HCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 44444444433 45 4699999999999999999887765555444443
No 372
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=33.46 E-value=46 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 18 ~Gy~~~s~~~Ia~~agvskgtlY~~F~s 45 (179)
T 2eh3_A 18 KGYQGTSVEEIVKRANLSKGAFYFHFKS 45 (179)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred cCCccCCHHHHHHHhCCCcHHHHHHcCC
Confidence 464 699999999999999999887764
No 373
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.46 E-value=35 Score=30.58 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.=.+
T Consensus 13 Il~aA~~lf~~-~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~ 54 (206)
T 1vi0_A 13 IIDAAVEVIAE-NGYHQSQVSKIAKQAGVADGTIYLYFKNKED 54 (206)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 34444433333 564 699999999999999999887764333
No 374
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=33.44 E-value=81 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|..+++.+.
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357999999999999999999999999774
No 375
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=33.13 E-value=29 Score=26.70 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
..+||.++|+.+|||..||.+..+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 358999999999999999987543
No 376
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=33.05 E-value=38 Score=28.35 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.+|+|.+|+...++.|.+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999998876
No 377
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=33.05 E-value=81 Score=26.35 Aligned_cols=43 Identities=9% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCC-CCChHHHHHHh-CCCHHHHHHHHHHHHHHhhh
Q 047665 115 ACSYVVMRLDDK-SLPISEVASVL-NCDVYELGRMITRVVEFLNL 157 (530)
Q Consensus 115 AclYiACR~~~~-P~TL~DIA~~~-~vd~~~Lgr~~k~L~k~L~i 157 (530)
-.|..+|++.|. |-++..||..+ +-++.++...|+.|.+.+.-
T Consensus 42 R~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 42 RVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp HHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 347788999887 89999999999 59999999999999988764
No 378
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=32.98 E-value=12 Score=30.67 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSV-KIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~-t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++ |..++|+..+||..|+++.++.|.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455 8999999999999999998887754
No 379
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=32.96 E-value=11 Score=27.08 Aligned_cols=27 Identities=30% Similarity=0.735 Sum_probs=18.8
Q ss_pred CCCCCCCC-CeEEe-cCCCcEEcCCCcee
Q 047665 2 PCTSCGSK-TLTRE-DISGSLICVSCGVV 28 (530)
Q Consensus 2 ~Cp~CG~~-~iv~D-~~~G~~VCt~CG~V 28 (530)
.|-+|+.. +..+. ...|..+|-.||+-
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 68999973 33333 33688999999974
No 380
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=32.87 E-value=9.9 Score=29.87 Aligned_cols=29 Identities=31% Similarity=0.733 Sum_probs=19.6
Q ss_pred CCCCCCCC-CeE-EecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSK-TLT-REDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~-~iv-~D~~~G~~VCt~CG~Vle 30 (530)
.|-+||.. +.. ....+|..+|-.||+-..
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~ 41 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLK 41 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHH
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHH
Confidence 68999873 222 222367899999998665
No 381
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.86 E-value=22 Score=31.89 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQ 264 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~ 264 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++.
T Consensus 33 Il~aa~~lf~~-~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~ 81 (215)
T 2qko_A 33 LVNAAIEVLAR-EGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGK 81 (215)
T ss_dssp HHHHHHHHHHH-TCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHH
Confidence 44444444333 564 6999999999999999999888765555555544
No 382
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.85 E-value=72 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=18.8
Q ss_pred CChHHHHHHhCCCHHHHHHHHH
Q 047665 128 LPISEVASVLNCDVYELGRMIT 149 (530)
Q Consensus 128 ~TL~DIA~~~~vd~~~Lgr~~k 149 (530)
+|+.|||..+|++..++.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999887653
No 383
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=32.77 E-value=1.1e+02 Score=25.49 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+|+.+||+.++++.+|+...++.|.+.
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 37899999999999999999998888774
No 384
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.75 E-value=1.3e+02 Score=24.74 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
|.+..+||+.++++...+.+.+++|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~ 79 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999988875
No 385
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=32.72 E-value=30 Score=25.41 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|+|..||.+-
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4589999999999999999763
No 386
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=32.69 E-value=68 Score=27.20 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..++|+.+|+|.+|+...++.|.+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999988
No 387
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=32.65 E-value=35 Score=30.85 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 33 Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~ 80 (217)
T 3hta_A 33 IIDAAIRVVGQ-KGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAAL 80 (217)
T ss_dssp HHHHHHHHHHH-HTGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHcCCCcchhhhcCCCHHHHHHHHH
Confidence 33344433333 464 699999999999999999888775444444443
No 388
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.62 E-value=1.7e+02 Score=24.60 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+...++.|.+.
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 46999999999999999999998888764
No 389
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.39 E-value=66 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..+++.+||+.++++.+|+.+.++.|.+
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4599999999999999999998887766
No 390
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.38 E-value=77 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=25.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7999999999999999999998888774
No 391
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=32.27 E-value=50 Score=26.18 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=26.6
Q ss_pred cCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 124 DDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 124 ~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.+-|.|..|||..++++...+.+.++.|.+.
T Consensus 33 ~~~~~t~~ela~~l~is~~tv~~~l~~L~~~ 63 (109)
T 2d1h_A 33 IEKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp HCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3567999999999999999999988888653
No 392
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=32.22 E-value=58 Score=29.83 Aligned_cols=37 Identities=5% Similarity=-0.057 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 117 SYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVE 153 (530)
Q Consensus 117 lYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k 153 (530)
|.-..++++.|.|++|||..++++...+.+..+.|.+
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4344567899999999999999997766665555544
No 393
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=32.04 E-value=20 Score=30.91 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..++
T Consensus 19 Il~aa~~lf~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~ 66 (156)
T 3ljl_A 19 IMDAVVDQLLR-LGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp HHHHHHHHHHH-THHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred HHHHHHHHHHH-hChhhcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 34444433333 454 599999999999999999988875444444433
No 394
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=32.03 E-value=1.7e+02 Score=24.05 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+...++.|.+.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 75 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHC
Confidence 36899999999999999999988888764
No 395
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=32.01 E-value=35 Score=30.40 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
|..||.=+-++ .|+ ..|+.+||+.+|||..|+-..++.
T Consensus 16 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2xdn_A 16 IIEAAERAFYK-RGVARTTLADIAELAGVTRGAIYWHFNN 54 (210)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTCCTTHHHHHCSS
T ss_pred HHHHHHHHHHH-cCcccCcHHHHHHHHCCChHHHHHHhCC
Confidence 44444444333 464 699999999999999999888764
No 396
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=31.88 E-value=84 Score=24.27 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
...+|+.++|+.+|+|..||.+-.+
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4568999999999999999987543
No 397
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=31.84 E-value=19 Score=31.53 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=18.7
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
+|+.||.--.+.....|.++| ||.-++
T Consensus 9 kC~~CGnivev~~~g~~~l~C--CG~~m~ 35 (126)
T 1vzi_A 9 KCEVCGNIVEVLNGGIGELVC--CNQDMK 35 (126)
T ss_dssp ECTTTCCEEEEEECCSSCEEE--TTEECE
T ss_pred EcCCCCeEEEEEcCCCcceec--CCcccc
Confidence 599998743333556778888 887665
No 398
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.71 E-value=93 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le~~ 78 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6899999999999999999998888774
No 399
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.69 E-value=48 Score=27.06 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..|..+||+.+++|..||++.++...+
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 468999999999999999988877654
No 400
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=31.66 E-value=63 Score=28.64 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=27.0
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.|+|..+||+.+|++...+.|+++++.+.
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57899999999999999999999999875
No 401
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.59 E-value=52 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|.+|||..++++..++.....++.+.|+..
T Consensus 44 G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 44 GFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45889999999999999988888888877753
No 402
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=31.39 E-value=62 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+++.+||+.++++.+|+...++.|.+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 347999999999999999999998888775
No 403
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=31.37 E-value=14 Score=27.47 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=8.9
Q ss_pred EEcCCCceeecc
Q 047665 20 LICVSCGVVQAF 31 (530)
Q Consensus 20 ~VCt~CG~Vle~ 31 (530)
.+|+.||.|.+.
T Consensus 3 ~~C~~CGyvYd~ 14 (52)
T 1yk4_A 3 LSCKICGYIYDE 14 (52)
T ss_dssp EEESSSSCEEET
T ss_pred EEeCCCCeEECC
Confidence 578888888764
No 404
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=31.36 E-value=23 Score=32.18 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+
T Consensus 33 ~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 76 (226)
T 2pz9_A 33 QRIVAAAKEEFAR-HGIAGARVDRIAKQARTSKERVYAYFRSKEA 76 (226)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHH-hCcccCcHHHHHHHHCCChHHHHHHcCCHHH
Confidence 4455555544444 454 599999999999999999988764333
No 405
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=31.34 E-value=45 Score=29.42 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=27.4
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
.|+ ..|+.+||+.+|||..|+-..++.=.+.+..++
T Consensus 28 ~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~ 64 (197)
T 2hyt_A 28 RGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVV 64 (197)
T ss_dssp HCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHH
T ss_pred hCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 464 699999999999999999888875444444443
No 406
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.21 E-value=2e+02 Score=23.76 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+...++.|.+.
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~ 74 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHC
Confidence 36999999999999999999998888774
No 407
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.18 E-value=54 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=26.6
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.|+|..+||+.+|++...+.|+.+++.+.
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 47999999999999999999999998774
No 408
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=31.16 E-value=50 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
+..+.-||-... ...+++.++|+.+|+|+.++.+.+++
T Consensus 9 ~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 9 RTRVCTVINNNI-AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHTST-TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333334443332 34789999999999999998877654
No 409
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=31.07 E-value=33 Score=29.02 Aligned_cols=23 Identities=0% Similarity=0.043 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
..|..++|+.++||++||.+-.|
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~k 61 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCX 61 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHH
Confidence 68999999999999999986554
No 410
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=30.96 E-value=27 Score=29.32 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=27.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQA 265 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~ 265 (530)
..++..||+.+||+++||.+.-..+.+.+..++..
T Consensus 23 ~~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~ 57 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAV 57 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 47899999999999999988655666655555544
No 411
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=30.95 E-value=45 Score=24.42 Aligned_cols=28 Identities=7% Similarity=-0.099 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 047665 234 IENVAKEVHCTVVTCRKRYKELLEALVK 261 (530)
Q Consensus 234 ~~eIA~~~~VS~~TIrkRyKEL~e~L~~ 261 (530)
..+||...||++.||++..+...+....
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~~~~~~ 55 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCESNLRSS 55 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999887765554433
No 412
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=30.94 E-value=88 Score=28.56 Aligned_cols=30 Identities=7% Similarity=0.207 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|+.+++.+.
T Consensus 184 ~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 184 TFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred EecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 357999999999999999999999998764
No 413
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=30.82 E-value=33 Score=26.08 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|||..||.+-
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~ 35 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNI 35 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 3589999999999999999764
No 414
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=30.81 E-value=50 Score=27.88 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-..+..+||+.+|+|.+|+...++.|.+
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999999885
No 415
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.79 E-value=49 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|..|||..++++..++.....++.+.|+..
T Consensus 36 g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 36 GLPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999998888888877753
No 416
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=30.77 E-value=42 Score=26.96 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELL 256 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~ 256 (530)
..|..+||+..|||..||.+..+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 57899999999999999998876543
No 417
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=30.75 E-value=45 Score=29.46 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++
T Consensus 15 Il~aA~~lf~~-~G~~~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 15 ILQAAIEVISE-KGLDKASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHHHhCC
Confidence 44444444433 564 69999999999999999987665
No 418
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=30.64 E-value=9.3 Score=27.89 Aligned_cols=27 Identities=30% Similarity=0.816 Sum_probs=17.5
Q ss_pred CCCCCCCC-CeEEec-CCCcEEcCCCcee
Q 047665 2 PCTSCGSK-TLTRED-ISGSLICVSCGVV 28 (530)
Q Consensus 2 ~Cp~CG~~-~iv~D~-~~G~~VCt~CG~V 28 (530)
.|.+|+.. +..+.. ..|..+|-.||+-
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 34 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLY 34 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHH
Confidence 58888873 223322 3577889999874
No 419
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=30.58 E-value=60 Score=28.96 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999988876
No 420
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=30.42 E-value=43 Score=31.92 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 46 Il~AA~~lf~e-~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~av~ 93 (273)
T 3c07_A 46 ILETAMRLFQE-RGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFY 93 (273)
T ss_dssp HHHHHHHHHHH-TCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHH
Confidence 44444444433 564 599999999999999999888775444444443
No 421
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.36 E-value=72 Score=24.14 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.8
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|..|||..++++...+.....++.+.|+..
T Consensus 31 g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 31 GLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 46889999999999999998888888888753
No 422
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=30.35 E-value=23 Score=27.11 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRK 250 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrk 250 (530)
..+|+.++|+.+|||..||.+
T Consensus 23 ~gltq~elA~~~gvs~~tis~ 43 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSR 43 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHH
Confidence 468999999999999999977
No 423
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=30.32 E-value=34 Score=25.71 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|+|..||.+-
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~ 40 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAM 40 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4689999999999999999774
No 424
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=30.23 E-value=58 Score=28.87 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.|+|..+||+.+|++...+.|+.+++.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 57999999999999999999999998874
No 425
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=30.21 E-value=15 Score=32.09 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
..+|+.+||+.+|||.+|+-..++.-.+.+..++
T Consensus 22 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 55 (189)
T 3geu_A 22 DGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 55 (189)
T ss_dssp HHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHhCCHHHHHHHHH
Confidence 3599999999999999999887765555444443
No 426
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=30.20 E-value=38 Score=31.49 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELL 256 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~ 256 (530)
-.++..|+|+.++||+.|||+=+.||.
T Consensus 25 ~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 25 PFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 368999999999999999999877753
No 427
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=30.18 E-value=13 Score=32.91 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
.-|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 16 ~~Il~aa~~lf~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 64 (195)
T 2iu5_A 16 KIIAKAFKDLMQS-NAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWI 64 (195)
T ss_dssp HHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 3445555544444 564 59999999999999999987776544444333
No 428
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.16 E-value=24 Score=26.80 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCCccCcc-cccccChhHHHHHhHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWGKDVTV-KNVLKNAPFVMNYMEMKSM 293 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~~~v~~-knl~~~~pdIi~~~e~~~~ 293 (530)
.++.+++|+.+|||..||.+..++ . +|....... +.+.-...+|.++++....
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~---------G-~P~~~~~g~~~~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ---------G-MPVLRGGGKGNEVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT---------T-CCCSSCCCSSSCCEEEHHHHHHHHTTTGG
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC---------C-CCeEeeCCCcceEEECHHHHHHHHHHCcc
Confidence 367899999999999999775442 1 255432221 2333337888888775543
No 429
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=30.01 E-value=69 Score=26.62 Aligned_cols=51 Identities=10% Similarity=0.108 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 111 ILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 111 ~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
.+..++-||- .....++++.++|..++++...|.+.|++ . |. .|..|+.+.
T Consensus 8 ~~~~~~~~i~-~~~~~~~~~~~lA~~~~~S~~~l~r~fk~---~-G~-----s~~~~~~~~ 58 (120)
T 3mkl_A 8 MRTRVCTVIN-NNIAHEWTLARIASELLMSPSLLKKKLRE---E-ET-----SYSQLLTEC 58 (120)
T ss_dssp HHHHHHHHHH-TSTTSCCCHHHHHHHTTCCHHHHHHHHHH---T-TC-----CHHHHHHHH
T ss_pred HHHHHHHHHH-HhccCCCCHHHHHHHHCcCHHHHHHHHHH---c-CC-----CHHHHHHHH
Confidence 3444445554 33345899999999999999999887753 2 43 355666543
No 430
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=29.96 E-value=66 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=27.3
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|+++++.+.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 202 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAH 202 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 457899999999999999999999999875
No 431
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.94 E-value=89 Score=26.09 Aligned_cols=72 Identities=7% Similarity=-0.046 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhCCC--CCCCchh---HHHHHHHHHHHHhcCCCCChHHHHHHhC--CCHHHHH
Q 047665 73 LIDELTFKLDLTGQRSIQIKNMIDKITDGEF--GLGDWFP---ILIGACSYVVMRLDDKSLPISEVASVLN--CDVYELG 145 (530)
Q Consensus 73 ~I~~i~~~LgLp~~i~e~A~~i~k~a~~~~l--~rGR~~~---~vaAAclYiACR~~~~P~TL~DIA~~~~--vd~~~Lg 145 (530)
-+.++|..||++...+..- ++.....+. ..|+... ......+-+ ..+-..|..+|+..++ ++..+|.
T Consensus 24 s~~~ia~~lgis~~Tv~r~---~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~---~~~~~~s~~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVY---LKDPVSYGTSKRAPRRKALSVRDERNVIRA---ASNSCKTARDIRNELQLSASKRTIL 97 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHH---HHSGGGTTCCCCCCCCCSSCHHHHHHHHHH---HHHCCCCHHHHHHHTTCCSCHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH---HHcccccCCcCCCCCCCcCCHHHHHHHHHH---HhCCCCCHHHHHHHHCCCccHHHHH
Confidence 3788999999998655443 443333221 1444221 111222211 2233478999999988 6777776
Q ss_pred HHHHH
Q 047665 146 RMITR 150 (530)
Q Consensus 146 r~~k~ 150 (530)
+.++.
T Consensus 98 r~l~~ 102 (141)
T 1u78_A 98 NVIKR 102 (141)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 432
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=29.91 E-value=60 Score=30.43 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 212 RPMPVVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 212 ~P~sIAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
+..-|..||+=+..+ .| ..+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 7 tr~~Il~AA~~l~~~-~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~ 58 (234)
T 2opt_A 7 TQDRIVVTALGILDA-EGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVF 58 (234)
T ss_dssp CHHHHHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHH
Confidence 345566666666655 45 4699999999999999999988876555444443
No 433
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.84 E-value=34 Score=25.50 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkR 251 (530)
.+|+.++|+.+|+|..||.+-
T Consensus 18 gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 579999999999999999774
No 434
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=29.76 E-value=69 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=27.6
Q ss_pred hcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 123 ~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
.++ |.|+.|||..++++...+.+.+++|.+.
T Consensus 51 ~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 51 SAS-DCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp HSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 444 9999999999999999999999988875
No 435
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=29.76 E-value=34 Score=28.77 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=24.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
..+..+||+.+++|.+|+...++.|.+
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578889999999999999999998876
No 436
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=29.75 E-value=18 Score=27.26 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=9.4
Q ss_pred cEEcCCCceeecc
Q 047665 19 SLICVSCGVVQAF 31 (530)
Q Consensus 19 ~~VCt~CG~Vle~ 31 (530)
..+|+.||.|.+.
T Consensus 3 ~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 3 KWQCVVCGFIYDE 15 (55)
T ss_dssp EEEETTTCCEEET
T ss_pred cEEeCCCCeEECC
Confidence 3578888888764
No 437
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=29.74 E-value=40 Score=31.58 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
+-.+++.+||+.++++.+|++..++.|.+.
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~ 47 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAE 47 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 346899999999999999999999888874
No 438
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=29.73 E-value=50 Score=30.81 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALV 260 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~ 260 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..|..-.+.+.
T Consensus 53 Il~AA~~lf~e-~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~ 97 (260)
T 2of7_A 53 IRAATYGLIRQ-QGYEATTVEQIAERAEVSPSTVLRYFPTREDIVL 97 (260)
T ss_dssp HHHHHHHHHHH-HCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHT
T ss_pred HHHHHHHHHHH-hCcccccHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 44444444433 464 599999999999999999888776555444
No 439
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=29.63 E-value=19 Score=30.31 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=17.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCce
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGV 27 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~ 27 (530)
.||.||...+ .---..|..||+
T Consensus 18 lCrRCG~~sf----H~qK~~CgkCGY 39 (97)
T 2zkr_2 18 LCRRCGSKAY----HLQKSTCGKCGY 39 (97)
T ss_dssp CCTTTCSSCE----ETTSCCBTTTCT
T ss_pred cCCCCCCccC----cCccccCcccCC
Confidence 5999999765 223569999998
No 440
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=29.62 E-value=43 Score=28.20 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
...|..++|+.++||++||.+-.|
T Consensus 34 ~~~si~elA~~~~vS~aTv~Rf~k 57 (107)
T 3iwf_A 34 VNMTSQEIANQLETSSTSIIRLSK 57 (107)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHH
Confidence 468999999999999999986644
No 441
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=29.60 E-value=64 Score=26.41 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEV-HCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~-~VS~~TIrkRyKEL~e 257 (530)
-..++.+|++.+ |++.+|+..+++.|.+
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 468999999999 5999999999998887
No 442
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.58 E-value=72 Score=28.27 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
|..||.=+-++ .|+ ..|+.+||+.+|||..|+-..++.=.+.+..+
T Consensus 16 Il~aA~~lF~~-~Gy~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av 62 (202)
T 2i10_A 16 ALQTAMELFWR-QGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKT 62 (202)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHH
Confidence 44444443333 564 59999999999999999998887533333333
No 443
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.47 E-value=36 Score=25.18 Aligned_cols=23 Identities=9% Similarity=-0.210 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRy 252 (530)
..+|+.++|+.+|+|..||.+-.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e 47 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVE 47 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999997743
No 444
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.41 E-value=60 Score=28.71 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=22.7
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 28 ~Gy~~ts~~~IA~~agvs~gtlY~yF~s 55 (205)
T 1rkt_A 28 KGFELTTMKDVVEESGFSRGGVYLYFSS 55 (205)
T ss_dssp HCSTTCCHHHHHHHHTSCHHHHHTTCSC
T ss_pred cCcccCCHHHHHHHHCCCcchhhhhCCC
Confidence 465 699999999999999999776653
No 445
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.24 E-value=18 Score=28.23 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=13.2
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCcee
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVV 28 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~V 28 (530)
.|..||...- .+ ....+-|..||.=
T Consensus 23 ~C~~Cg~~~~-l~-~~~~iRC~~CG~R 47 (63)
T 3h0g_L 23 LCADCGARNT-IQ-AKEVIRCRECGHR 47 (63)
T ss_dssp BCSSSCCBCC-CC-SSSCCCCSSSCCC
T ss_pred ECCCCCCeee-cC-CCCceECCCCCcE
Confidence 4777766321 11 2344677777753
No 446
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=29.22 E-value=72 Score=26.93 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcCCCCChHHHHHHhCCCHHHHHHHHHHHHHHhhhcCCccchhhHHHHH
Q 047665 110 PILIGACSYVVMRLDDKSLPISEVASVLNCDVYELGRMITRVVEFLNLKLPEVDIVSMFERV 171 (530)
Q Consensus 110 ~~vaAAclYiACR~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~~p~vdp~~~I~R~ 171 (530)
..+..++-||- .....++++.++|..++++...|.+.|++ .+|. .|..|+.+.
T Consensus 11 ~~i~~~~~~i~-~~~~~~~sl~~lA~~~~~S~~~l~r~fk~---~~G~-----s~~~~l~~~ 63 (129)
T 1bl0_A 11 ITIHSILDWIE-DNLESPLSLEKVSERSGYSKWHLQRMFKK---ETGH-----SLGQYIRSR 63 (129)
T ss_dssp HHHHHHHHHHH-TTTTSCCCCHHHHHHSSSCHHHHHHHHHH---HHSS-----CHHHHHHHH
T ss_pred HHHHHHHHHHH-HccCCCCCHHHHHHHHCcCHHHHHHHHHH---HHCc-----CHHHHHHHH
Confidence 34444555554 33456799999999999999999887664 3453 355565543
No 447
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=29.21 E-value=54 Score=28.24 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+...++.|.+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~ 93 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 47899999999999999999998888774
No 448
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.19 E-value=36 Score=25.44 Aligned_cols=23 Identities=13% Similarity=-0.071 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRy 252 (530)
..+|+.++|+.+|+|..||.+-.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e 44 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVE 44 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHH
Confidence 45899999999999999997743
No 449
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=29.15 E-value=47 Score=31.50 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcccCCCC
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLEALVKVAQALPWG 269 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~lpW~ 269 (530)
|.+++..++|+..|||..|||..++.|.. .-++...|..
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~--~Glv~~~~~~ 85 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEA--QSLLRVETHK 85 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEETTT
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEeCCC
Confidence 56789999999999999999999998854 2444444543
No 450
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=29.11 E-value=88 Score=28.69 Aligned_cols=28 Identities=4% Similarity=0.111 Sum_probs=25.3
Q ss_pred C-CCCHHHHHHHhCCCH-HHHHHHHHHHHH
Q 047665 230 V-SVKIENVAKEVHCTV-VTCRKRYKELLE 257 (530)
Q Consensus 230 ~-k~t~~eIA~~~~VS~-~TIrkRyKEL~e 257 (530)
. ++|+.+||..+|+|. .|+.+-+++|.+
T Consensus 167 ~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 167 LDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp CSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 5 789999999999999 699999888866
No 451
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.10 E-value=60 Score=23.84 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhh
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNL 157 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i 157 (530)
..|..|||..+|++...+.+...+..+.|.-
T Consensus 31 g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 31 GLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998888877777653
No 452
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=29.04 E-value=40 Score=29.49 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..+..-.+
T Consensus 12 Il~aA~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 12 LKRAALELYSE-HGYDNVTVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHHh-cCccccCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33344433333 564 599999999999999999776654333
No 453
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=28.94 E-value=10 Score=29.24 Aligned_cols=22 Identities=36% Similarity=0.801 Sum_probs=16.6
Q ss_pred CCCCCCCCCeEEecCCCcEEcCCCceeec
Q 047665 2 PCTSCGSKTLTREDISGSLICVSCGVVQA 30 (530)
Q Consensus 2 ~Cp~CG~~~iv~D~~~G~~VCt~CG~Vle 30 (530)
.|+.||.-++ ..+|..||....
T Consensus 7 ~C~~Cg~YTL-------k~~CP~CG~~t~ 28 (60)
T 2aus_D 7 KCPKCGRYTL-------KETCPVCGEKTK 28 (60)
T ss_dssp ECTTTCCEES-------SSBCTTTCSBCE
T ss_pred ECCCCCCEEc-------cccCcCCCCccC
Confidence 5999987543 347999998766
No 454
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.94 E-value=46 Score=29.60 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++.
T Consensus 14 Il~AA~~lf~~-~G~~~~s~~~IA~~AGvs~gtlY~~F~s 52 (203)
T 2np5_A 14 LAAALFDVAAE-SGLEGASVREVAKRAGVSIGAVQHHFST 52 (203)
T ss_dssp HHHHHHHHHHH-HCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHH-hChhhccHHHHHHHhCCCHHHHHHHcCC
Confidence 44444444433 464 599999999999999999887664
No 455
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=28.90 E-value=1.2e+02 Score=27.29 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcccccccCchhHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 047665 191 MRKQGVLLLNCAVKWFLTTGRRPMPVVVAVLVFVVELNGVSVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 191 V~~~A~~Ll~~a~~~~l~tGR~P~sIAAAAIYlAa~~~g~k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
+..+...=+..+.+.+...||.|.--. ..|+ . +.....|..+||+.+|+|.+|+.+.++
T Consensus 122 i~~R~~~g~~~~~~~G~~~Gr~~~~~~-~~i~-~--~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 122 ILERTNEGRQEAMAKGVVFGRKRKIDR-DAVL-N--MWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSCCCSCH-HHHH-H--HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCCCCCCCCH-HHHH-H--HHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 333333334444455556788653211 2222 2 222346999999999999999987654
No 456
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=28.85 E-value=59 Score=29.26 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
|..||+-+-++ .|+ ..|+.+||+.+|||..|+-..++
T Consensus 14 Il~aA~~lf~~-~Gy~~ts~~~IA~~AGvskgtlY~~F~ 51 (215)
T 1ui5_A 14 IIGAAADLFDR-RGYESTTLSEIVAHAGVTKGALYFHFA 51 (215)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHH-hCcccCCHHHHHHHhCCCchhhHhhCC
Confidence 44444433333 464 69999999999999999988776
No 457
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=28.84 E-value=47 Score=30.11 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
.++|+.+||..+|+|..|+.+-+++|.+
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999888865
No 458
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.80 E-value=27 Score=32.41 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhhc
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKVA 263 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~ 263 (530)
|..||+=+.++ .|+ .+|+.+||+.+|||..|+-..++.-.+.+..++
T Consensus 48 Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~ 95 (255)
T 3g1o_A 48 ILATAENLLED-RPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLL 95 (255)
T ss_dssp HHHHHHHHHTT-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444433332 465 699999999999999999888775444444443
No 459
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.69 E-value=36 Score=27.54 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
..+||.++|+.+|||..||.+..+
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999987443
No 460
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=28.66 E-value=60 Score=28.03 Aligned_cols=29 Identities=3% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEV-HCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~-~VS~~TIrkRyKEL~e~ 258 (530)
-..++.+|++.+ +++.+|+..+++.|.+.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 368999999999 79999999999998874
No 461
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=28.62 E-value=57 Score=32.53 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+|.+++|+.++||+.||++.++.|.+
T Consensus 17 ~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 17 GEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34689999999999999999999999877
No 462
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.48 E-value=12 Score=36.67 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH-------HHHHHHHhhcccCCC
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYK-------ELLEALVKVAQALPW 268 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyK-------EL~e~L~~l~~~lpW 268 (530)
+.|++|||+.+|||..|+++.+. +..+...+.++++-+
T Consensus 4 ~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY 48 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAY 48 (339)
T ss_dssp ---------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC
Confidence 57899999999999999998875 344444555555433
No 463
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=28.44 E-value=38 Score=25.24 Aligned_cols=23 Identities=9% Similarity=-0.080 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRy 252 (530)
..+|+.++|+.+|+|..|+.+-.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e 44 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWC 44 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999997643
No 464
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.28 E-value=18 Score=28.71 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=10.0
Q ss_pred CcEEcCCCceeecc
Q 047665 18 GSLICVSCGVVQAF 31 (530)
Q Consensus 18 G~~VCt~CG~Vle~ 31 (530)
...+|+.||.|.+.
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 45778888888764
No 465
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.27 E-value=48 Score=27.62 Aligned_cols=28 Identities=7% Similarity=-0.032 Sum_probs=25.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~ 77 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 6899999999999999999988888763
No 466
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=28.16 E-value=69 Score=26.90 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+++.+||+.++++.+|+...++.|.+.
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 7899999999999999999999988875
No 467
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=28.12 E-value=14 Score=32.18 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
.-|..||+-+.++ .|+ .+|+.+||+.+|||..|+-..+..-.+.+..+
T Consensus 15 ~~Il~aA~~lf~~-~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 63 (199)
T 3on2_A 15 RVLLARAESTLEK-DGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDAL 63 (199)
T ss_dssp HHHHHHHHHHHHH-HCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHH
Confidence 3455555555544 465 59999999999999999977665544433333
No 468
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=28.07 E-value=82 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+..+++++||+.++++..|+.+.++.|.+
T Consensus 34 ~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp TTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34699999999999999999999888865
No 469
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=28.03 E-value=45 Score=29.60 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNG-VSVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g-~k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
|..||.-+-++ .| ...|+.+||+.+|||..|+-..++.
T Consensus 19 Il~aA~~lf~~-~G~~~~s~~~IA~~agvsk~tlY~yF~s 57 (199)
T 3crj_A 19 IMQATYRALRE-HGYADLTIQRIADEYGKSTAAVHYYYDT 57 (199)
T ss_dssp HHHHHHHHHHH-HTTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCChhHHhhhcCC
Confidence 44444444333 46 4699999999999999999776653
No 470
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.01 E-value=57 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.032 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkR 251 (530)
...+|+.++|+.+|||..||.+-
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34689999999999999999764
No 471
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=27.95 E-value=67 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYK 253 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyK 253 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..++
T Consensus 14 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvsk~tlY~~F~ 51 (203)
T 3cdl_A 14 IVQAAIAEFGD-RGFEITSMDRIAARAEVSKRTVYNHFP 51 (203)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHTTSCHHHHHTTSS
T ss_pred HHHHHHHHHHH-cCchhcCHHHHHHHhCCCHHHHHHHCC
Confidence 44444443333 464 69999999999999999987665
No 472
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=27.90 E-value=33 Score=35.55 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCCCCCC--CCeEEecCCCcEEcCCCce
Q 047665 2 PCTSCGS--KTLTREDISGSLICVSCGV 27 (530)
Q Consensus 2 ~Cp~CG~--~~iv~D~~~G~~VCt~CG~ 27 (530)
.||-|+. +++..++..|...|-.||.
T Consensus 36 ~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 36 NCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp CCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 5999986 5688888899999999983
No 473
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=27.81 E-value=1.9e+02 Score=28.91 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHhhc-cc---ccccCchhHHHHHHHHHHHHc-CCCCCHHHHHHHhC
Q 047665 168 FERVIRNSRLQGFTNLDESMLDRMRKQGVLLLNCAVKW-FL---TTGRRPMPVVVAVLVFVVELN-GVSVKIENVAKEVH 242 (530)
Q Consensus 168 I~R~~~~L~l~~v~~v~~e~~~~V~~~A~~Ll~~a~~~-~l---~tGR~P~sIAAAAIYlAa~~~-g~k~t~~eIA~~~~ 242 (530)
...+|+.|++ + +.+...|..+.+.+... .+ ..|. ..-.-.||+|+|++-. |..+|+.+|-+.++
T Consensus 6 F~~lC~~Lnl---d-------~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKI---P-------DHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTC---C-------HHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCC---C-------HHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 3456888887 4 46888899999988763 21 2233 3334445599999753 46699999999999
Q ss_pred CCHHHH
Q 047665 243 CTVVTC 248 (530)
Q Consensus 243 VS~~TI 248 (530)
++..-.
T Consensus 75 lsi~~F 80 (304)
T 2qdj_A 75 ISVHKF 80 (304)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 886544
No 474
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=27.78 E-value=80 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=25.8
Q ss_pred CCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 126 KSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 126 ~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
-|.+..|||..++++...+.+.++.|.+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~ 61 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 47899999999999999999998888664
No 475
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=27.77 E-value=59 Score=27.64 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-.+|+.+||+.++++.+|+...++.|.+
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999999999999999998888877
No 476
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.76 E-value=60 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=27.7
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 128 LPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 128 ~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
.|.+|||..++++..++.....++.+.|+..
T Consensus 43 ~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 43 LTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999988888888864
No 477
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=27.76 E-value=67 Score=28.57 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 125 DKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 125 ~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|+|..+||+.+|++...+.|.++++.+.
T Consensus 144 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 144 VLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 357999999999999999999999998775
No 478
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=27.59 E-value=95 Score=29.05 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=30.0
Q ss_pred cCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHhhccc--CCC
Q 047665 228 NGVSV-KIENVAKEVHCTVVTCRKRYKELLEALVKVAQA--LPW 268 (530)
Q Consensus 228 ~g~k~-t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l~~~--lpW 268 (530)
.|.++ +..++|+..|||..|||..++.|... -++.. .|.
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~--GlV~~~~~~~ 65 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLREALRVLEAL--GTISTATGSG 65 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEECCSTTS
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeEeecccC
Confidence 46788 47799999999999999999888752 34444 555
No 479
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.57 E-value=40 Score=25.82 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|+|..|+.+.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~ 44 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGI 44 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4589999999999999999874
No 480
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.56 E-value=80 Score=32.07 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=27.7
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 228 NGVSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 228 ~g~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
.+-++|..|||+.+++|.+|+.+++++|.+.
T Consensus 27 ~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 27 QLGPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp SSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3457999999999999999999999999883
No 481
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=27.48 E-value=40 Score=25.99 Aligned_cols=23 Identities=4% Similarity=-0.052 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRY 252 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRy 252 (530)
..+|+.++|+.+|||..||.+-.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHH
Confidence 35899999999999999998743
No 482
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=27.48 E-value=57 Score=29.07 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.5
Q ss_pred cCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 228 NGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 228 ~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|+ ..|+.+||+.+|||..|+-..++.
T Consensus 27 ~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2wui_A 27 KGVGTTAMADLADAAGVSRGAVYGHYKN 54 (210)
T ss_dssp SCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred cCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 565 599999999999999999888764
No 483
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=27.47 E-value=73 Score=27.14 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+||+.++++.+|+...++.|.+.
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~ 84 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46999999999999999999988888764
No 484
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=27.46 E-value=39 Score=31.22 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLEALVKV 262 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e~L~~l 262 (530)
.-|..||+=+.++ .|+ ..|+.+||+.+|||..|+-..++.-.+.+..+
T Consensus 21 ~~Il~AA~~lf~~-~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av 69 (251)
T 3npi_A 21 DTVLDIALSLFSE-LGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICC 69 (251)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHH
Confidence 3455555544443 454 69999999999999999998887544433333
No 485
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=27.38 E-value=63 Score=25.72 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.3
Q ss_pred CCCCHHHH----HHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENV----AKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eI----A~~~~VS~~TIrkRyKEL~e~ 258 (530)
-.+++.+| |+..+++.+|+.+.++.|.+.
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 46899999 888999999999998888773
No 486
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.37 E-value=62 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHHhhhc
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEFLNLK 158 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~L~i~ 158 (530)
..|.+|||..++++..++.....++.+.|+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45789999999999999998888888888764
No 487
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=27.36 E-value=71 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
-..++.++|+..++|.+|++..++.|.+.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~ 81 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATM 81 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 35799999999999999999999998775
No 488
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.35 E-value=26 Score=35.39 Aligned_cols=30 Identities=30% Similarity=0.710 Sum_probs=20.9
Q ss_pred CCCCCCCC---CeEEe--cCCC--cEEcCCCceeecc
Q 047665 2 PCTSCGSK---TLTRE--DISG--SLICVSCGVVQAF 31 (530)
Q Consensus 2 ~Cp~CG~~---~iv~D--~~~G--~~VCt~CG~Vle~ 31 (530)
.||.||+. .++.. ..+| .+.|.-||+-..+
T Consensus 184 ~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 184 LCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp SCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred CCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 59999994 23332 1356 4899999999875
No 489
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.27 E-value=75 Score=27.16 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=26.0
Q ss_pred CCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 127 SLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 127 P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
|.++.|||+.++++...+.+.+++|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~ 85 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 8999999999999999999999888875
No 490
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=27.25 E-value=39 Score=27.68 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkR 251 (530)
.++|.++|+.+|||..||..-
T Consensus 32 GikQ~eLAK~iGIsqsTLSaI 52 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSI 52 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHH
Confidence 789999999999999999863
No 491
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=27.20 E-value=54 Score=29.88 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 215 PVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 215 sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.|..||+=+..+ .|+ ..|+.+||+.+|||..|+-..+..
T Consensus 11 ~Il~aA~~l~~~-~G~~~~tv~~Ia~~agvs~~t~y~~F~~ 50 (213)
T 3ni7_A 11 AIVDTAVELAAH-TSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213)
T ss_dssp HHHHHHHHHHHH-SCSTTCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHH-cCccccCHHHHHHHhCCCHHHHHHHCCC
Confidence 344455544433 564 699999999999999999887753
No 492
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=27.19 E-value=68 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
|..||.=+-++ .|+ ..|+.+||+.+|||..|+-..++.
T Consensus 15 Il~aA~~lf~~-~G~~~~s~~~IA~~aGvs~gtlY~yF~s 53 (194)
T 2nx4_A 15 ITAAAWRLIAA-RGIEAANMRDIATEAGYTNGALSHYFAG 53 (194)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHh-cCcccCCHHHHHHHhCCCcchHHHhCcC
Confidence 44444443333 464 599999999999999999877664
No 493
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.18 E-value=1.2e+02 Score=26.19 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLEA 258 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e~ 258 (530)
..+|+.+||+.++++.+|+...++.|.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~ 79 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRD 79 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45899999999999999999999888654
No 494
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=27.17 E-value=41 Score=25.74 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q 047665 231 SVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 231 k~t~~eIA~~~~VS~~TIrkR 251 (530)
.+|+.++|+.+|++..||.+.
T Consensus 27 gltq~elA~~~gis~~~is~~ 47 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 589999999999999998774
No 495
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=27.10 E-value=85 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=28.1
Q ss_pred hcCCCCChHHHHHHhCCCHHHHHHHHHHHHHH
Q 047665 123 LDDKSLPISEVASVLNCDVYELGRMITRVVEF 154 (530)
Q Consensus 123 ~~~~P~TL~DIA~~~~vd~~~Lgr~~k~L~k~ 154 (530)
..|-++|..+||+.+|++...+.+++..|.+.
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~ 60 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35657899999999999999999999988774
No 496
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=27.08 E-value=41 Score=30.13 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 216 VVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 216 IAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
|..||+=+-++ .|+ ..|+.+||+.+|||..|+-..+..=.+
T Consensus 27 Il~AA~~lf~e-~G~~~~s~~~IA~~AGVsk~tlY~~F~sKe~ 68 (207)
T 3bjb_A 27 MLEAAIELATE-KELARVQMHEVAKRAGVAIGTLYRYFPSKTH 68 (207)
T ss_dssp HHHHHHHHHHH-SCGGGCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 33344433333 564 599999999999999999888764333
No 497
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=27.02 E-value=48 Score=29.65 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHcCC-CCCHHHHHHHhCCCHHHHHHHHHH
Q 047665 214 MPVVVAVLVFVVELNGV-SVKIENVAKEVHCTVVTCRKRYKE 254 (530)
Q Consensus 214 ~sIAAAAIYlAa~~~g~-k~t~~eIA~~~~VS~~TIrkRyKE 254 (530)
.-|..||.=+-++ .|+ ..|+.+||+.+|||..|+-..++.
T Consensus 14 ~~Il~aA~~lf~~-~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (219)
T 2w53_A 14 EGILDAAEACFHE-HGVARTTLEMIGARAGYTRGAVYWHFKN 54 (219)
T ss_dssp HHHHHHHHHHHHH-HCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHH-hCcccCCHHHHHHHhCCCchHHhhcCCC
Confidence 3455555544443 464 699999999999999999877653
No 498
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.99 E-value=56 Score=27.74 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
-.+|+.+||+.++++.+|+...++.|.+
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 5799999999999999999998877765
No 499
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=26.97 E-value=41 Score=25.60 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 047665 230 VSVKIENVAKEVHCTVVTCRKR 251 (530)
Q Consensus 230 ~k~t~~eIA~~~~VS~~TIrkR 251 (530)
..+|+.++|+.+|+|..||.+-
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~ 43 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKI 43 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4689999999999999999763
No 500
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.87 E-value=1.6e+02 Score=25.52 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 047665 229 GVSVKIENVAKEVHCTVVTCRKRYKELLE 257 (530)
Q Consensus 229 g~k~t~~eIA~~~~VS~~TIrkRyKEL~e 257 (530)
+-.+++.+||+.++++.+|+...++.|.+
T Consensus 60 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 60 PEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46799999999999999999998887766
Done!