BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047667
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 143 bits (360), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
+Y+VFLSFRG DTR+ FT LY +L+ I+ FRDD EL KG I P LL+AI++S+I +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73 IVLSKNYASSTWCLDELAKIVECKNRKDQ--ILPIFYDVEPTVVRKQTASFGEAFAKHEE 130
++S YA S WCL ELA+IV + + ILPIFY V+P+ VR QT + +AF KH
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 AFRNNVEKVQTWRDALKTVANKSGWEL 157
F + + +Q W+DALK V + GW +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
KYDVFLSFRG DTR +F LY L + I F+DDKELE G SPEL IE SR ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73 IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
+V+S+NYA+S+WCLDEL I++ + + ++PIFY VEP VR QT E F KH A
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH--A 125
Query: 132 FRNNVEKVQTWRDALKTVANKSG 154
R + EKV WR AL A SG
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG 148
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 13 KYDVFLSFRGEDTRKSF--TGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRI 70
++ F+S+ G D SF L L+ +G + ++ G SI ++ IE+S
Sbjct: 12 QFHAFISYSGHD---SFWVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYK 68
Query: 71 SIIVLSKNYASSTWCLDEL 89
SI VLS N+ S WC EL
Sbjct: 69 SIFVLSPNFVQSEWCHYEL 87
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 51 LEKGGSISPELLKAIEESRISIIVLSKNYASSTWC 85
+ G SIS ++ IE+S SI VLS N+ + WC
Sbjct: 74 FDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108
>pdb|2Y92|A Chain A, Crystal Structure Of Mal Adaptor Protein
Length = 145
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
YDV + ED + Y + F ++ GG+I EL +A+ S ++
Sbjct: 10 YDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVL 69
Query: 74 VLSKNYASSTWC-LDELAKIVECKNRKDQILPIF 106
+++ + WC L + E + +P+
Sbjct: 70 LITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 103
>pdb|3UB2|A Chain A, Tir Domain Of MalTIRAP
Length = 146
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
YDV + ED + Y + F ++ GG+I EL +A+ S ++
Sbjct: 11 YDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVL 70
Query: 74 VLSKNYASSTWC-LDELAKIVECKNRKDQILPIF 106
+++ + WC L + E + +P+
Sbjct: 71 LITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|3UB4|A Chain A, S180l Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
YDV + ED + Y + F ++ GG+I EL +A+ S ++
Sbjct: 11 YDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVL 70
Query: 74 VLSKNYASSTWC-LDELAKIVECKNRKDQILPIF 106
+++ + WC L + E + +P+
Sbjct: 71 LITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLL 104
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 31.6 bits (70), Expect = 0.21, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 4 TSIQKVSHGKYDVF----LSFRGE-----DTRKSFTGHLYAALKNKGIYVFRDDKELEKG 54
TS V +G YD++ + +G TR G + +LKN GI V+ D KG
Sbjct: 51 TSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQGAV-TSLKNNGIQVYGDVVMNHKG 109
Query: 55 GSISPELLKAIEESR 69
G+ E++ A+E +R
Sbjct: 110 GADGTEMVNAVEVNR 124
>pdb|3UB3|A Chain A, D96n Variant Of Tir Domain Of MalTIRAP
Length = 146
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 44 VFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWC-LDELAKIVECKNRKDQI 102
F ++ GG+I EL +A+ S +++++ + WC L + E +
Sbjct: 41 CFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCT 100
Query: 103 LPIF 106
+P+
Sbjct: 101 IPLL 104
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 29.3 bits (64), Expect = 0.90, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 5 SIQKVSHGKYDVFL--SFRGEDTRKSFTG---HLYAA---LKNKGIYVFRDDKELEKGGS 56
S V +G YD++ F + T ++ G L AA LKN GI V+ D KGG+
Sbjct: 52 SQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVMNHKGGA 111
Query: 57 ISPELLKAIE 66
+ E+++A+E
Sbjct: 112 DATEMVRAVE 121
>pdb|1T3G|A Chain A, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
pdb|1T3G|B Chain B, Crystal Structure Of The TollINTERLEUKIN-1 Receptor
(Tir) Domain Of Human Il-1rapl
Length = 159
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 14 YDVFLSFR-----------GEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELL 62
YD +LS+ GE+ R + K+ G +F D++L G+ ++
Sbjct: 3 YDAYLSYTKVDPDQWNQETGEEERFALEILPDXLEKHYGYKLFIPDRDLIPTGTYIEDVA 62
Query: 63 KAIEESRISIIVLSKNY-ASSTWCLDEL 89
+ +++S+ IIV + NY W + EL
Sbjct: 63 RCVDQSKRLIIVXTPNYVVRRGWSIFEL 90
>pdb|3N09|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|B Chain B, Atomic Model Of An Infectious Rotavirus Particle
Length = 800
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 89 LAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKT 148
L K + K+ IL D++P V+KQT F + +R N E K
Sbjct: 11 LQKTIPTFEPKESILKKLEDIKPEQVKKQTKLFRIFEPRQLPVYRANGE---------KE 61
Query: 149 VANKSGWELK 158
+ N+ W+LK
Sbjct: 62 LRNRWYWKLK 71
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GGSISPELLKAIEESRISIIVLSKNYASSTWCLDEL 89
G I ++ +IE+S ++ VLS+N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GGSISPELLKAIEESRISIIVLSKNYASSTWCLDEL 89
G I ++ +IE+S ++ VLS+N+ S W EL
Sbjct: 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYEL 82
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 4 TSIQKVSHGKYDVF----LSFRGE-----DTRKSFTGHLYAALKNKGIYVFRDDKELEKG 54
TS V +G YD++ + +G TR ++A LKN G+ V+ D KG
Sbjct: 51 TSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLESAIHA-LKNNGVQVYGDVVMNHKG 109
Query: 55 GSISPELLKAIE 66
G+ + E + A+E
Sbjct: 110 GADATENVLAVE 121
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 26.6 bits (57), Expect = 7.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 4 TSIQKVSHGKYDVF----LSFRGE-----DTRKSFTGHLYAALKNKGIYVFRDDKELEKG 54
TS V +G YD++ + +G TR ++A LKN G+ V+ D KG
Sbjct: 47 TSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLESAIHA-LKNNGVQVYGDVVMNHKG 105
Query: 55 GSISPELLKAIE 66
G+ + E + A+E
Sbjct: 106 GADATENVLAVE 117
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 54 GGSISPELLKAIEESRISIIVLSKNYASSTWCLDEL 89
G I ++ +IE+S ++ VLS+N+ S W EL
Sbjct: 44 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWSKYEL 79
>pdb|3CVZ|A Chain A, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|B Chain B, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|C Chain C, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|D Chain D, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
Length = 273
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 43 YVFRDDKELEKGGSISPELLKAIEES 68
+V +DD +L K G+I+ ++ A EES
Sbjct: 229 FVTKDDTDLAKSGTINVRVINAKEES 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,571,530
Number of Sequences: 62578
Number of extensions: 173319
Number of successful extensions: 580
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 24
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)