Query 047667
Match_columns 160
No_of_seqs 147 out of 1369
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 23:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 9E-49 3.1E-53 295.3 12.0 153 5-159 27-181 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 2.7E-48 9.2E-53 287.9 10.8 149 8-158 3-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.3E-35 4.5E-40 216.1 0.9 136 8-149 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.5E-31 5.3E-36 193.1 1.8 132 6-146 3-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 3.5E-28 1.2E-32 176.1 0.6 104 10-115 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 1E-27 3.5E-32 175.5 3.2 102 8-111 11-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 1.3E-27 4.4E-32 177.8 3.0 107 8-116 30-142 (178)
8 1t3g_A X-linked interleukin-1 99.9 1E-26 3.5E-31 170.0 5.9 101 12-112 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-21 4.9E-26 173.3 5.8 101 9-111 666-774 (844)
10 1eiw_A Hypothetical protein MT 98.6 2.8E-08 9.5E-13 67.9 3.6 73 12-107 3-75 (111)
11 3hyn_A Putative signal transdu 98.0 3.2E-05 1.1E-09 56.8 8.0 105 21-129 27-140 (189)
12 2f62_A Nucleoside 2-deoxyribos 96.1 0.048 1.6E-06 39.1 9.2 73 28-106 27-105 (161)
13 2khz_A C-MYC-responsive protei 94.9 0.43 1.5E-05 34.0 10.5 94 1-106 3-110 (165)
14 4fyk_A Deoxyribonucleoside 5'- 93.3 0.66 2.3E-05 32.8 8.6 85 15-106 4-101 (152)
15 3ehd_A Uncharacterized conserv 91.0 1.4 4.8E-05 31.4 8.1 76 28-107 20-105 (162)
16 1s2d_A Purine trans deoxyribos 86.9 3.6 0.00012 29.3 7.8 88 15-106 9-116 (167)
17 1f8y_A Nucleoside 2-deoxyribos 69.9 5.6 0.00019 28.0 4.1 75 28-106 19-113 (157)
18 1v95_A Nuclear receptor coacti 69.8 23 0.00077 24.2 7.0 46 27-74 21-67 (130)
19 2yvq_A Carbamoyl-phosphate syn 69.4 7.6 0.00026 26.7 4.7 62 16-79 27-106 (143)
20 2jug_A TUBC protein; docking d 61.8 7.5 0.00026 23.8 3.1 38 30-67 7-47 (78)
21 1byr_A Protein (endonuclease); 48.4 26 0.00089 23.4 4.4 37 28-65 14-50 (155)
22 1wu7_A Histidyl-tRNA synthetas 47.8 57 0.002 26.1 7.1 59 13-77 332-391 (434)
23 2fz5_A Flavodoxin; alpha/beta 45.9 57 0.002 20.9 7.8 59 27-95 14-73 (137)
24 3net_A Histidyl-tRNA synthetas 45.2 35 0.0012 27.9 5.4 62 12-78 370-431 (465)
25 2i4l_A Proline-tRNA ligase; al 42.4 8 0.00028 31.7 1.1 60 13-77 365-427 (458)
26 1evl_A Threonyl-tRNA synthetas 42.1 54 0.0018 26.0 6.0 61 12-77 297-357 (401)
27 4g84_A Histidine--tRNA ligase, 41.4 77 0.0026 25.5 6.9 61 11-76 364-425 (464)
28 3ikl_A DNA polymerase subunit 41.3 18 0.0006 30.0 3.0 54 24-81 361-417 (459)
29 3lc0_A Histidyl-tRNA synthetas 40.7 66 0.0023 26.3 6.4 61 12-77 360-420 (456)
30 3hly_A Flavodoxin-like domain; 40.6 83 0.0028 21.3 10.0 62 16-82 3-65 (161)
31 1htt_A Histidyl-tRNA synthetas 40.3 46 0.0016 26.5 5.3 59 12-76 326-387 (423)
32 2pw6_A Uncharacterized protein 39.9 49 0.0017 25.1 5.2 67 27-95 95-161 (271)
33 4g85_A Histidine-tRNA ligase, 39.7 93 0.0032 25.6 7.2 63 11-77 417-479 (517)
34 4a6h_A Phosphatidylinositol 4, 35.9 23 0.00078 23.4 2.4 20 134-153 101-120 (120)
35 1nj1_A PROR, proline-tRNA synt 34.9 32 0.0011 28.6 3.6 61 12-77 313-378 (501)
36 1sc3_B Interleukin-1 beta conv 34.3 11 0.00037 23.7 0.5 25 17-41 21-45 (88)
37 2ql9_B Caspase-7; cysteine pro 34.1 8 0.00027 24.7 -0.2 30 12-41 9-47 (97)
38 4a8j_B Elongator complex prote 33.0 42 0.0015 25.7 3.7 68 41-113 68-142 (270)
39 4e51_A Histidine--tRNA ligase; 33.0 65 0.0022 26.4 5.2 65 12-77 353-417 (467)
40 1qtn_B Caspase-8; apoptosis, d 32.2 7.7 0.00026 24.8 -0.5 31 11-41 10-49 (95)
41 2fzv_A Putative arsenical resi 31.1 1.4E+02 0.0047 22.7 6.5 55 28-83 76-138 (279)
42 1qe0_A Histidyl-tRNA synthetas 31.0 44 0.0015 26.6 3.8 60 12-77 328-388 (420)
43 2dko_B Caspase-3; low barrier 30.6 9.8 0.00034 24.7 -0.2 31 11-41 14-53 (103)
44 3pid_A UDP-glucose 6-dehydroge 30.5 34 0.0012 27.9 3.1 50 23-72 347-400 (432)
45 1pyo_B Caspase-2; apoptosis, c 29.7 10 0.00036 24.6 -0.2 31 11-41 12-51 (105)
46 4a7p_A UDP-glucose dehydrogena 29.6 59 0.002 26.5 4.4 62 23-84 337-406 (446)
47 1hc7_A Prolyl-tRNA synthetase; 29.0 52 0.0018 27.1 3.9 61 12-77 286-352 (477)
48 3hjn_A DTMP kinase, thymidylat 28.8 84 0.0029 22.2 4.7 32 17-48 2-35 (197)
49 1v5p_A Pleckstrin homology dom 28.7 39 0.0013 22.3 2.6 20 134-153 103-122 (126)
50 4f21_A Carboxylesterase/phosph 28.1 1.3E+02 0.0044 21.9 5.7 37 12-48 182-220 (246)
51 4hvc_A Bifunctional glutamate/ 27.9 23 0.0008 29.7 1.7 47 12-58 307-363 (519)
52 3kkq_A RAS-related protein M-R 27.5 1.4E+02 0.0046 19.8 8.3 24 57-80 79-102 (183)
53 4dik_A Flavoprotein; TM0755, e 27.1 2.2E+02 0.0074 22.7 7.3 66 15-83 267-334 (410)
54 2coc_A FYVE, rhogef and PH dom 26.2 43 0.0015 21.7 2.5 18 134-151 89-106 (112)
55 4h0c_A Phospholipase/carboxyle 26.0 1.3E+02 0.0044 21.1 5.3 36 13-48 151-188 (210)
56 1bax_A M-PMV MA, M-PMV matrix 25.8 38 0.0013 21.7 2.0 17 28-44 10-26 (94)
57 1nyr_A Threonyl-tRNA synthetas 25.5 1.2E+02 0.004 25.9 5.6 59 13-76 545-604 (645)
58 2zt5_A Glycyl-tRNA synthetase; 25.4 2E+02 0.0069 24.9 7.1 62 13-78 559-621 (693)
59 2q62_A ARSH; alpha/beta, flavo 25.2 2.1E+02 0.0071 21.1 8.8 65 28-95 52-123 (247)
60 2yry_A Pleckstrin homology dom 24.8 49 0.0017 20.9 2.5 18 135-152 104-121 (122)
61 2cof_A Protein KIAA1914; PH do 24.8 51 0.0017 20.5 2.6 19 134-152 84-102 (107)
62 3ojo_A CAP5O; rossmann fold, c 24.8 95 0.0032 25.2 4.7 53 23-76 330-383 (431)
63 3fni_A Putative diflavin flavo 24.6 1.6E+02 0.0056 19.8 10.0 63 15-82 6-70 (159)
64 2xzd_B Caspase-3; hydrolase-pr 24.6 15 0.00052 24.5 -0.1 29 13-41 15-52 (118)
65 1nbw_B Glycerol dehydratase re 24.2 1.6E+02 0.0055 19.5 6.0 63 13-77 5-69 (117)
66 1qf6_A THRRS, threonyl-tRNA sy 24.0 39 0.0013 29.0 2.4 61 13-78 539-599 (642)
67 3uh0_A Threonyl-tRNA synthetas 23.5 38 0.0013 27.8 2.2 61 13-77 345-421 (460)
68 2j3l_A Prolyl-tRNA synthetase; 23.4 1.3E+02 0.0046 25.0 5.6 62 13-78 470-533 (572)
69 1h4v_B Histidyl-tRNA synthetas 23.4 1.9E+02 0.0066 22.8 6.3 59 12-77 327-386 (421)
70 1dlj_A UDP-glucose dehydrogena 23.4 1.3E+02 0.0043 23.9 5.2 51 23-73 324-379 (402)
71 3ial_A Prolyl-tRNA synthetase; 23.4 20 0.00069 30.1 0.4 32 28-59 323-356 (518)
72 3zyz_A Beta-D-glucoside glucoh 23.2 3.7E+02 0.013 23.3 8.9 78 29-114 395-488 (713)
73 3vsj_B 2-amino-5-chlorophenol 23.2 2.5E+02 0.0087 21.4 7.7 77 28-106 101-189 (312)
74 2hfv_A Hypothetical protein RP 23.0 49 0.0017 21.3 2.2 35 15-51 22-56 (97)
75 3rjm_B Caspase-2; caspase-2, c 22.9 16 0.00054 24.3 -0.2 31 11-41 13-52 (117)
76 1jdp_A NPR-C, atrial natriuret 22.9 1.7E+02 0.0057 22.8 5.9 58 16-74 157-218 (441)
77 5nul_A Flavodoxin; electron tr 22.8 1.2E+02 0.004 19.5 4.3 12 58-69 96-107 (138)
78 2ohh_A Type A flavoprotein FPR 22.7 2.5E+02 0.0086 21.6 6.8 73 15-95 258-332 (404)
79 3f6r_A Flavodoxin; FMN binding 20.7 1.8E+02 0.0062 18.8 5.6 56 16-81 4-62 (148)
80 2amj_A Modulator of drug activ 20.6 2.3E+02 0.0078 19.9 6.3 51 29-83 35-85 (204)
81 2d9v_A Pleckstrin homology dom 20.5 69 0.0024 20.8 2.6 20 134-153 97-116 (130)
82 2l69_A Rossmann 2X3 fold prote 20.4 1.8E+02 0.0062 18.7 6.8 86 17-114 5-90 (134)
83 2i5f_A Pleckstrin; PH domain, 20.4 66 0.0023 19.7 2.5 16 135-150 93-108 (109)
84 3g79_A NDP-N-acetyl-D-galactos 20.3 89 0.0031 25.8 3.8 52 23-74 368-421 (478)
85 1ati_A Glycyl-tRNA synthetase; 20.2 1.3E+02 0.0045 24.8 4.8 60 13-77 398-460 (505)
86 2zki_A 199AA long hypothetical 20.2 2E+02 0.0069 19.6 5.3 54 27-83 18-85 (199)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=9e-49 Score=295.34 Aligned_cols=153 Identities=46% Similarity=0.823 Sum_probs=139.7
Q ss_pred CCCCCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHH
Q 047667 5 SIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTW 84 (160)
Q Consensus 5 ss~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~w 84 (160)
+|++.+.++|||||||+++|.|..|+.+|+.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|+|++|+.|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 33445689999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hh-cCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeecC
Q 047667 85 CLDELAKIVEC-KN-RKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD 159 (160)
Q Consensus 85 c~~El~~~~~~-~~-~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~~ 159 (160)
|++||..+++| +. .+.+||||||+++|++||+|+|.||++|.++.+.+. ++++++||.||++|++++||++.+
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECT
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCC
Confidence 99999999999 54 578999999999999999999999999999998774 689999999999999999999865
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-48 Score=287.90 Aligned_cols=149 Identities=49% Similarity=0.790 Sum_probs=126.1
Q ss_pred CCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHH
Q 047667 8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~ 87 (160)
++..++|||||||+++|.|..|+.+|+.+|+++||++|+|++++.+|+.+.++|.++|++|++.|+|+|++|++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 34467899999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeec
Q 047667 88 ELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELK 158 (160)
Q Consensus 88 El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~ 158 (160)
||..+++| +..+.+||||||+++|++|++|+|.||++|.++.+. .+++++++||.||++|++++|+++.
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999 778899999999999999999999999999999987 4589999999999999999999974
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.3e-35 Score=216.11 Aligned_cols=136 Identities=26% Similarity=0.397 Sum_probs=118.9
Q ss_pred CCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHH
Q 047667 8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~ 87 (160)
.++.++|||||||+++| +..|+.+|..+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 34578999999999999 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047667 88 ELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTV 149 (160)
Q Consensus 88 El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i 149 (160)
|+..++++ ...+.+||||||+++|++|+.+.|.|++.|..... ...+.++.+.|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 99999988 66778999999999999999999999988764433 24456666666554
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=1.5e-31 Score=193.14 Aligned_cols=132 Identities=17% Similarity=0.300 Sum_probs=93.0
Q ss_pred CCCCCCCceeEEEecccCCCchhHHHHHHHHHhc--CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667 6 IQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKN--KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASST 83 (160)
Q Consensus 6 s~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~ 83 (160)
.|+..++.|||||||+++|. .||.+|..+|++ .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|++|.
T Consensus 3 ~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 34667889999999999997 789999999999 59999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hhcCCccccEEeecCchhhhcccch--------hHHHHHHHHHhccCChHHHHHHHHHH
Q 047667 84 WCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTAS--------FGEAFAKHEEAFRNNVEKVQTWRDAL 146 (160)
Q Consensus 84 wc~~El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~W~~al 146 (160)
||..|+..|+++ .....+||||++++++++++..... ....|.++. +.+.+|++||
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~-------~~v~~~~~~~ 145 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVK-------EAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHH-------HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHH-------HHHHHHHHhc
Confidence 999999999997 3344478899998887666543321 123333332 5677888775
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.94 E-value=3.5e-28 Score=176.08 Aligned_cols=104 Identities=22% Similarity=0.379 Sum_probs=93.5
Q ss_pred CCCceeEEEecccCCCchhHHHH-HHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHH
Q 047667 10 SHGKYDVFLSFRGEDTRKSFTGH-LYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCL 86 (160)
Q Consensus 10 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~ 86 (160)
.++.|||||||+++|. .||.+ |..+|++. |+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999996 89997 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--hhcCCccccEEee-cCchhhh
Q 047667 87 DELAKIVEC--KNRKDQILPIFYD-VEPTVVR 115 (160)
Q Consensus 87 ~El~~~~~~--~~~~~~iiPI~~~-~~p~~v~ 115 (160)
.|+..|+++ ...+.+||||+++ +.+..++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999864 5567899999995 5554454
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1e-27 Score=175.48 Aligned_cols=102 Identities=18% Similarity=0.312 Sum_probs=92.3
Q ss_pred CCCCCceeEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeecCCcCCHH
Q 047667 8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSKNYASSTW 84 (160)
Q Consensus 8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~~~~~S~w 84 (160)
.+.++.|||||||+++|. .||.+|..+|++. |+++|++++|+.||+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 345788999999999995 8999999999985 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHH--hhcCCccccEEeecCc
Q 047667 85 CLDELAKIVEC--KNRKDQILPIFYDVEP 111 (160)
Q Consensus 85 c~~El~~~~~~--~~~~~~iiPI~~~~~p 111 (160)
|..|+..|+++ ...+.+||||+|+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999987 4456799999996543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=1.3e-27 Score=177.76 Aligned_cols=107 Identities=23% Similarity=0.399 Sum_probs=91.2
Q ss_pred CCCCCceeEEEecccCCCchhHHHH-HHHHHhc--CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHH
Q 047667 8 KVSHGKYDVFLSFRGEDTRKSFTGH-LYAALKN--KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTW 84 (160)
Q Consensus 8 ~~~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~w 84 (160)
...++.|||||||+++|. .||.+ |..+|++ .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999996 89975 9999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhcCCccccEEee-cCchhhhc
Q 047667 85 CLDELAKIVEC--KNRKDQILPIFYD-VEPTVVRK 116 (160)
Q Consensus 85 c~~El~~~~~~--~~~~~~iiPI~~~-~~p~~v~~ 116 (160)
|..|+..|+++ ...+.+||||+++ +.+.+++.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~ 142 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT 142 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence 99999999865 5567799999995 44444443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=170.01 Aligned_cols=101 Identities=22% Similarity=0.390 Sum_probs=89.5
Q ss_pred CceeEEEecccCCC---------chhHHHHHHH-HHh-cCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCc
Q 047667 12 GKYDVFLSFRGEDT---------RKSFTGHLYA-ALK-NKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYA 80 (160)
Q Consensus 12 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~ 80 (160)
+.|||||||+++|. ++.||.+|.. .|| +.|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3568888555 699 689999999999999999999999999999999999999997
Q ss_pred -CCHHHHHHHHHHHHH--hhcCCccccEEeecCch
Q 047667 81 -SSTWCLDELAKIVEC--KNRKDQILPIFYDVEPT 112 (160)
Q Consensus 81 -~S~wc~~El~~~~~~--~~~~~~iiPI~~~~~p~ 112 (160)
.|.||..|++.|+++ .+.+.+||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 999999999999987 66678999999875544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=173.25 Aligned_cols=101 Identities=17% Similarity=0.354 Sum_probs=92.2
Q ss_pred CCCCceeEEEecccCCCchhHH-HHHHHHHhc-----CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 047667 9 VSHGKYDVFLSFRGEDTRKSFT-GHLYAALKN-----KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASS 82 (160)
Q Consensus 9 ~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S 82 (160)
..++.|||||||+++|. +|| ..|...||+ .|+++|+++||+.||+.+.++|.++|++|+++|+|+|++|++|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45789999999999996 777 679999996 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hhcCCccccEEeecCc
Q 047667 83 TWCLDELAKIVEC--KNRKDQILPIFYDVEP 111 (160)
Q Consensus 83 ~wc~~El~~~~~~--~~~~~~iiPI~~~~~p 111 (160)
.||..|++.|+++ ++.+++||||+++..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999999987 6677899999996544
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.59 E-value=2.8e-08 Score=67.91 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=57.7
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHH
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAK 91 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~ 91 (160)
++|.+||||++.| . .+.|...|.+.|+...- ..|+.|+++|++.++...+|+||.+|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWRP----------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEEE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeeec----------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4699999999998 2 55566666544554332 67889999999999999999999999998
Q ss_pred HHHHhhcCCccccEEe
Q 047667 92 IVECKNRKDQILPIFY 107 (160)
Q Consensus 92 ~~~~~~~~~~iiPI~~ 107 (160)
|.+ .+++||-|..
T Consensus 63 A~~---~gkpIigV~~ 75 (111)
T 1eiw_A 63 ARK---SSKPIITVRP 75 (111)
T ss_dssp HTT---TTCCEEEECC
T ss_pred HHH---cCCCEEEEEc
Confidence 865 6788887764
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.97 E-value=3.2e-05 Score=56.79 Aligned_cols=105 Identities=15% Similarity=0.198 Sum_probs=72.4
Q ss_pred ccCCCchhHHHHHHHHHhcCCceEEeeCCCcc-------C-CCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHH
Q 047667 21 RGEDTRKSFTGHLYAALKNKGIYVFRDDKELE-------K-GGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKI 92 (160)
Q Consensus 21 ~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~-G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~ 92 (160)
+.+|. ...+.|..--++..+--|.|..+.. . -..|...+.+.|..|+.+|+++|+++..+.|..+|++.|
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 44554 5577777777766665666765542 2 345678899999999999999999999999999999999
Q ss_pred HHHhhcCCccccEEeecC-chhhhcccchhHHHHHHHH
Q 047667 93 VECKNRKDQILPIFYDVE-PTVVRKQTASFGEAFAKHE 129 (160)
Q Consensus 93 ~~~~~~~~~iiPI~~~~~-p~~v~~~~~~~~~~~~~~~ 129 (160)
+. ..+.+||-|..+-. .+++..-.|.+......++
T Consensus 105 i~--~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~w 140 (189)
T 3hyn_A 105 IG--TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLW 140 (189)
T ss_dssp TT--TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHH
T ss_pred HH--hcCCcEEEEECCccccchhhhccccchhhHhhcC
Confidence 82 26788888886532 2344433444444444333
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=96.13 E-value=0.048 Score=39.09 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCccCCCCchHHH----HHHHHhcceEEEEeec--CCcCCHHHHHHHHHHHHHhhcCCc
Q 047667 28 SFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL----LKAIEESRISIIVLSK--NYASSTWCLDELAKIVECKNRKDQ 101 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i----~~~i~~S~~~v~vlS~--~~~~S~wc~~El~~~~~~~~~~~~ 101 (160)
.+...+...|++.|+.+++-..+- ..+...| .++|++|+++|++++| .--.+.-+..|+..|.. .+++
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~---~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A---lgKP 100 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNE---ATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKM 100 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTC---CSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCE
T ss_pred HHHHHHHHHHHHCCCEEECCCccC---cchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH---CCCE
Confidence 678999999999999988743211 1234444 7899999999999996 44455679999999987 5677
Q ss_pred cccEE
Q 047667 102 ILPIF 106 (160)
Q Consensus 102 iiPI~ 106 (160)
|+-+.
T Consensus 101 Vi~l~ 105 (161)
T 2f62_A 101 VLTFT 105 (161)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66554
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=94.87 E-value=0.43 Score=34.01 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCceeEEEecccCCCc--hhHHHHHHHHHhcCCceEEeeCCCccC-----CCC-------chHHHHHHHH
Q 047667 1 MASTSIQKVSHGKYDVFLSFRGEDTR--KSFTGHLYAALKNKGIYVFRDDKELEK-----GGS-------ISPELLKAIE 66 (160)
Q Consensus 1 m~s~ss~~~~~~~ydVFISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d~~dl~~-----G~~-------~~~~i~~~i~ 66 (160)
||.++- +++..|||+=.-...+ ......+...|++.| .|+.+.. ..| |.. +.+.-.+.|+
T Consensus 3 ~~~~~~----~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~-~~p~~~~~g~~~~~~~~~i~~~d~~~i~ 76 (165)
T 2khz_A 3 MAASGE----QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHV-ADAELEPLGEEAAGGDQFIHEQDLNWLQ 76 (165)
T ss_dssp CCCCSS----CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGT-TTTSSSCCSTTSTTCHHHHHHHHHHHHH
T ss_pred cccCCC----CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-Ccccccc-cCchhhccccccccCHHHHHHHHHHHHH
Confidence 555444 3346799984433211 224688999999999 8865431 222 211 1223357899
Q ss_pred hcceEEEEeecCCcCCHHHHHHHHHHHHHhhcCCccccEE
Q 047667 67 ESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIF 106 (160)
Q Consensus 67 ~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~ 106 (160)
+|+++|++++ -.+.-+..|+..|.. .+++|+-+.
T Consensus 77 ~aD~vva~~~---~~d~Gt~~EiGyA~a---lgKPVi~l~ 110 (165)
T 2khz_A 77 QADVVVAEVT---QPSLGVGYELGRAVA---LGKPILCLF 110 (165)
T ss_dssp HCSEEEEECS---SCCHHHHHHHHHHHH---TCSSEEEEE
T ss_pred hCCEEEEECC---CCCCCHHHHHHHHHH---CCCEEEEEE
Confidence 9999999997 457789999999987 577776553
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=93.26 E-value=0.66 Score=32.83 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=54.1
Q ss_pred eEEEe--cccCCCchhHHHHHHHHHhcCCceEEeeC---CCc-cCCCC-------chHHHHHHHHhcceEEEEeecCCcC
Q 047667 15 DVFLS--FRGEDTRKSFTGHLYAALKNKGIYVFRDD---KEL-EKGGS-------ISPELLKAIEESRISIIVLSKNYAS 81 (160)
Q Consensus 15 dVFIS--y~~~D~~~~fv~~L~~~L~~~g~~v~~d~---~dl-~~G~~-------~~~~i~~~i~~S~~~v~vlS~~~~~ 81 (160)
-||++ +.+......+...+.+.|++.| .|+... .++ ..|+. +.+.-.+.|++|+.+|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 2222222357899999999999 664321 111 01211 34455678999999999998 55
Q ss_pred CHHHHHHHHHHHHHhhcCCccccEE
Q 047667 82 STWCLDELAKIVECKNRKDQILPIF 106 (160)
Q Consensus 82 S~wc~~El~~~~~~~~~~~~iiPI~ 106 (160)
+.-...|+..|.. .+++|+-++
T Consensus 80 d~Gt~~EiG~A~a---lgkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVA---LGKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CCCHHHHHHHHHH---cCCeEEEEE
Confidence 7788999999987 466665554
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=91.04 E-value=1.4 Score=31.39 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcC--CceEEeeCCCcc----CCCCchHHH----HHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHHhh
Q 047667 28 SFTGHLYAALKNK--GIYVFRDDKELE----KGGSISPEL----LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKN 97 (160)
Q Consensus 28 ~fv~~L~~~L~~~--g~~v~~d~~dl~----~G~~~~~~i----~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~ 97 (160)
.+..++.++|++. |+.++.-.++-. ++..+...| .++|++|+++|+++. ....+..+..|+..|..
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a--- 95 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA--- 95 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH---
Confidence 5678899999875 898887443321 233344444 467999999999995 33456889999999987
Q ss_pred cCCccccEEe
Q 047667 98 RKDQILPIFY 107 (160)
Q Consensus 98 ~~~~iiPI~~ 107 (160)
.+++|+.+.-
T Consensus 96 ~gkPVi~~~~ 105 (162)
T 3ehd_A 96 KGIPVVALYT 105 (162)
T ss_dssp TTCCEEEECC
T ss_pred CCCEEEEEEc
Confidence 5666666643
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=86.94 E-value=3.6 Score=29.33 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=58.1
Q ss_pred eEEEecccCCC-chhHHHHHHHHHhcC--CceEEeeCCC-c--------cCC--------CCchHHHHHHHHhcceEEEE
Q 047667 15 DVFLSFRGEDT-RKSFTGHLYAALKNK--GIYVFRDDKE-L--------EKG--------GSISPELLKAIEESRISIIV 74 (160)
Q Consensus 15 dVFISy~~~D~-~~~fv~~L~~~L~~~--g~~v~~d~~d-l--------~~G--------~~~~~~i~~~i~~S~~~v~v 74 (160)
-||+.=.--.. ...+...+.+.|++. |+.++.-.++ . ..+ ..+.+.-.++|++|+++|++
T Consensus 9 kIYLAGP~F~~~~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ 88 (167)
T 1s2d_A 9 KIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFL 88 (167)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEE
Confidence 47776322111 135788899999999 8888864431 1 111 11233445689999999999
Q ss_pred eecCCcCCHHHHHHHHHHHHHhhcCCccccEE
Q 047667 75 LSKNYASSTWCLDELAKIVECKNRKDQILPIF 106 (160)
Q Consensus 75 lS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~ 106 (160)
+...-. +.-+..|+..|.. .+++|+-+.
T Consensus 89 ldg~~~-D~GTa~EiGyA~a---lgKPVv~l~ 116 (167)
T 1s2d_A 89 YDMDQL-DDGSAFXIGFMRA---MHKPVILVP 116 (167)
T ss_dssp EESSSC-CHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CCCCCC-CCCceeehhhHhh---CCCeEEEEE
Confidence 987544 4678999999987 577776653
No 17
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=69.91 E-value=5.6 Score=27.96 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCc----eEEeeCCCcc------------CCC----CchHHHHHHHHhcceEEEEeecCCcCCHHHHH
Q 047667 28 SFTGHLYAALKNKGI----YVFRDDKELE------------KGG----SISPELLKAIEESRISIIVLSKNYASSTWCLD 87 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~----~v~~d~~dl~------------~G~----~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~ 87 (160)
....++...|++.|. .++.-.++-. ++. .+.+.-.++|++|+++|+++...- .+.-+..
T Consensus 19 ~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~~ 97 (157)
T 1f8y_A 19 KAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLGM 97 (157)
T ss_dssp HHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHHH
T ss_pred HHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHHH
Confidence 568889999999985 5655332111 111 123344578999999999998433 4567899
Q ss_pred HHHHHHHHhhcCCccccEE
Q 047667 88 ELAKIVECKNRKDQILPIF 106 (160)
Q Consensus 88 El~~~~~~~~~~~~iiPI~ 106 (160)
|+..|.. .+++|+-+.
T Consensus 98 EiGyA~A---~gkPVv~~~ 113 (157)
T 1f8y_A 98 ELGYALS---QGKYVLLVI 113 (157)
T ss_dssp HHHHHHH---TTCEEEEEE
T ss_pred HHHHHHH---CCCeEEEEE
Confidence 9999987 567775553
No 18
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=69.77 E-value=23 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHH-HhcceEEEE
Q 047667 27 KSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAI-EESRISIIV 74 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i-~~S~~~v~v 74 (160)
.+++..+...|...|+++-+|.+ .+++.+...|.++- .+.-++++|
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 48999999999999999998773 12566666776653 345544443
No 19
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.41 E-value=7.6 Score=26.65 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=40.1
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCceEEeeC-------------C---CccCC-C-CchHHHHHHHHhcceEEEEeec
Q 047667 16 VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDD-------------K---ELEKG-G-SISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~-------------~---dl~~G-~-~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
||||.+..|+ .-+..+...|.+.|++++--. + .+.-| + .-.++|...|.+-++-+||.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987775 335567888888888877211 1 11112 1 0003578888888888888888
Q ss_pred CC
Q 047667 78 NY 79 (160)
Q Consensus 78 ~~ 79 (160)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=61.81 E-value=7.5 Score=23.76 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceEEeeCCCcc---CCCCchHHHHHHHHh
Q 047667 30 TGHLYAALKNKGIYVFRDDKELE---KGGSISPELLKAIEE 67 (160)
Q Consensus 30 v~~L~~~L~~~g~~v~~d~~dl~---~G~~~~~~i~~~i~~ 67 (160)
+..|...|++.|+.+|.+...+. |-..+.+++...+..
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 56788999999999999987764 445566677666643
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=48.44 E-value=26 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHH
Q 047667 28 SFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAI 65 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i 65 (160)
.+...+.+.+++..-.+++-.-.+ +...+.+.+.++.
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 345556666666544444443333 2333444444443
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=47.81 E-value=57 Score=26.14 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=38.9
Q ss_pred ceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
.++|+|..-+.+. ...+..+...|.+.|++|-+|.++ ..+...+..+-. +... ++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~-~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADF-AVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSE-EEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCE-EEEECc
Confidence 4899876555443 356889999999999999998753 344455555433 4444 444443
No 23
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=45.89 E-value=57 Score=20.92 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHH
Q 047667 27 KSFTGHLYAALKNKGIYVFR-DDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC 95 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~-d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~ 95 (160)
+.+++.+.+.|+..|+.+-+ +-.+.. ...+.+.+ .|++.||.|..+.-...++..+++.
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCCCCCHHHHHHHHHH
Confidence 46788999999888876633 332221 12355565 6677788887654222235555554
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=45.19 E-value=35 Score=27.91 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=41.2
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN 78 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~ 78 (160)
..+||+|..-+.+. ...+..+...|++.|++|-+|.++ ..+...+..+-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 45799987654443 356889999999999999998753 345455665544333355555543
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=42.36 E-value=8 Score=31.71 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=37.4
Q ss_pred ceeEEEeccc-CC-CchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 13 KYDVFLSFRG-ED-TRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 13 ~ydVFISy~~-~D-~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
.++|+|.--. ++ .....+..|++.|++.|++|.+|.++-.+| ..+..+-. +.. .++++.+
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g----~k~~~ad~~g~p-~~iivG~ 427 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAG----AKFATADLIGIP-WQIHVGP 427 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHH----HHHHHHHHHTCS-EEEEECH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHH----HHHHHHHhcCCC-EEEEECC
Confidence 4788877432 22 123568899999999999999998653333 44444432 334 4444443
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=42.14 E-value=54 Score=26.03 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=39.9
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
..++|+|.--+.+ ....+..|...|++.|+++-+|.++ ..+...+..+-..---.++++.+
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEECc
Confidence 3478988765433 2467889999999999999999853 34555666554433334444443
No 27
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=41.41 E-value=77 Score=25.46 Aligned_cols=61 Identities=15% Similarity=0.040 Sum_probs=39.0
Q ss_pred CCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEee
Q 047667 11 HGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLS 76 (160)
Q Consensus 11 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS 76 (160)
....+|+|...+.+. ...+..|...|.+.|+++-++.. .+..+...+..|-. +.. .++|+.
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~-~~viiG 425 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIP-LVAIIG 425 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCC-EEEECC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCC-EEEEEC
Confidence 345789998766554 35588899999999999977642 23345455555543 344 444443
No 28
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=41.32 E-value=18 Score=30.02 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCchhHHHHHHHHHhcCCceEE--eeCC-CccCCCCchHHHHHHHHhcceEEEEeecCCcC
Q 047667 24 DTRKSFTGHLYAALKNKGIYVF--RDDK-ELEKGGSISPELLKAIEESRISIIVLSKNYAS 81 (160)
Q Consensus 24 D~~~~fv~~L~~~L~~~g~~v~--~d~~-dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~ 81 (160)
+.-..++..|.+.|++.|++|. +|++ +-.+| ..+.++=..---.++++.++-++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siG----kK~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLE----QLYSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTH----HHHHHHGGGTCSEEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHH----HHHHHHHHcCCCEEEEECchhhh
Confidence 3335679999999999999999 7765 44444 34444433222355566665443
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=40.67 E-value=66 Score=26.27 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=40.1
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
...||||...+++. ...+-.+...|++.|+++-++.. +..+...+..|-+.--..++++.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEECC
Confidence 35788877655543 24588899999999999988763 234555666665544445555553
No 30
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=40.59 E-value=83 Score=21.30 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=37.6
Q ss_pred EEEecccCCC-chhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 047667 16 VFLSFRGEDT-RKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASS 82 (160)
Q Consensus 16 VFISy~~~D~-~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S 82 (160)
|.|-|.+.-. -+..++.|.+.|+..|+.+-+.+ + .+.-.+++...+.+++ .|++-||.|...
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~--~--~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 65 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVD--L--RAVDPQELIEAVSSAR-GIVLGTPPSQPS 65 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEE--T--TTCCHHHHHHHHHHCS-EEEEECCBSSCC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE--C--CCCCHHHHHHHHHhCC-EEEEEcCCcCCc
Confidence 3444543321 24678999999999998764322 1 1122345556667777 567779999654
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=40.32 E-value=46 Score=26.53 Aligned_cols=59 Identities=24% Similarity=0.433 Sum_probs=39.2
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEee
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLS 76 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS 76 (160)
..++|+|..-+.+. ...+..|+..|++. |++|-+|.++ ..+...+..+-. +....| ++.
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~i-iiG 387 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAV-VLG 387 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEE-EEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEE-EEC
Confidence 45789888755432 45688999999999 9999998754 344455555433 444444 443
No 32
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=39.85 E-value=49 Score=25.11 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHH
Q 047667 27 KSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC 95 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~ 95 (160)
.+++.++.+.|.+.|+.+-...+.+..|.-+ -+.-.-.+.++-||-+|-+...+.--..+|..++..
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~v--PL~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~ 161 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWG--VLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAA 161 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHH--HHHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhh--hHHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999776555666666432 222233456788888998876677666789999876
No 33
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=39.73 E-value=93 Score=25.63 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=39.3
Q ss_pred CCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667 11 HGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 11 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
....||||...+.+. ...+..|...|.+.|+++-++.. .+..+...+..|-..--..++|+.+
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG~ 479 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIGE 479 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEECH
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEECC
Confidence 345799988755543 35688899999999999977642 2334555555554432234444443
No 34
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=35.87 E-value=23 Score=23.38 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 047667 134 NNVEKVQTWRDALKTVANKS 153 (160)
Q Consensus 134 ~~~~~~~~W~~al~~i~~~~ 153 (160)
++.+..++|.+||..+++++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 34788999999999998753
No 35
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=34.95 E-value=32 Score=28.57 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=39.2
Q ss_pred CceeEEEecc-cCC---CchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 12 GKYDVFLSFR-GED---TRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~-~~D---~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
..|+|+|--- ..+ .-...+..|.+.|++.|++|-+|.++-.+| ..+..+-. +.. .++++.+
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g----~k~~~a~~~G~p-~~iiiG~ 378 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAG----RKYYEWEMRGVP-LRVEIGP 378 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHH----HHHHHHHHEECS-EEEEECH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHH----HHHHHHHhcCCC-EEEEECc
Confidence 3478887754 322 224678999999999999999998754444 44544433 333 4445544
No 36
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=34.32 E-value=11 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=16.1
Q ss_pred EEecccCCCchhHHHHHHHHHhcCC
Q 047667 17 FLSFRGEDTRKSFTGHLYAALKNKG 41 (160)
Q Consensus 17 FISy~~~D~~~~fv~~L~~~L~~~g 41 (160)
|+||++......|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3444444333468999999998654
No 37
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=34.07 E-value=8 Score=24.74 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=18.6
Q ss_pred CceeEEEecccCC---------CchhHHHHHHHHHhcCC
Q 047667 12 GKYDVFLSFRGED---------TRKSFTGHLYAALKNKG 41 (160)
Q Consensus 12 ~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~g 41 (160)
..-|.+++|+..+ ....|+..|.+.|++.+
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3456666665433 23467888888887654
No 38
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=33.05 E-value=42 Score=25.71 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=40.7
Q ss_pred CceEEeeCCCccCCCCchHHHHHHHH------hcceEEEEeecCCcCCHHHHHHHHHHHHH-hhcCCccccEEeecCchh
Q 047667 41 GIYVFRDDKELEKGGSISPELLKAIE------ESRISIIVLSKNYASSTWCLDELAKIVEC-KNRKDQILPIFYDVEPTV 113 (160)
Q Consensus 41 g~~v~~d~~dl~~G~~~~~~i~~~i~------~S~~~v~vlS~~~~~S~wc~~El~~~~~~-~~~~~~iiPI~~~~~p~~ 113 (160)
+...|++.+.. .-..+.++|..... ..+.+|+|=|=||+.+ ..|..++.. -.....++-+++..-|..
T Consensus 68 ~ad~FI~a~~k-sl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~~ 142 (270)
T 4a8j_B 68 YCTQFIDATQM-DFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKDE 142 (270)
T ss_dssp TCSEEEETTSS-CHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCCC
T ss_pred CCCeeeEcCCC-CHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCCC
Confidence 56777777543 22223333333322 2367999999999997 467777765 434557777777544433
No 39
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=33.04 E-value=65 Score=26.36 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=41.4
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
...+|+|..-+.+. ...+..+...|++.|++|-+|...=..+..+...+..+-..--..++|+.+
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 34688876544332 356888999999999999998741112556666676665433334445543
No 40
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=32.24 E-value=7.7 Score=24.79 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=19.6
Q ss_pred CCceeEEEecccCCC---------chhHHHHHHHHHhcCC
Q 047667 11 HGKYDVFLSFRGEDT---------RKSFTGHLYAALKNKG 41 (160)
Q Consensus 11 ~~~ydVFISy~~~D~---------~~~fv~~L~~~L~~~g 41 (160)
+..-|.+++|+..+. ...|+..|.+.|++.+
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 345677777765432 2357888888887643
No 41
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=31.11 E-value=1.4e+02 Score=22.73 Aligned_cols=55 Identities=16% Similarity=-0.043 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCceEEe-eCCCcc--CCC-----CchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667 28 SFTGHLYAALKNKGIYVFR-DDKELE--KGG-----SISPELLKAIEESRISIIVLSKNYASST 83 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~-d~~dl~--~G~-----~~~~~i~~~i~~S~~~v~vlS~~~~~S~ 83 (160)
..++.+.+.|++.|..+-+ |-.++. ..+ .-..++.+.|..++ .|++.||.|..+.
T Consensus 76 ~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD-giV~aSP~Yn~si 138 (279)
T 2fzv_A 76 LAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE-GQVWCSPERHGQI 138 (279)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS-EEEEEEEEETTEE
T ss_pred HHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC-eEEEEcCccccCc
Confidence 4567777778877876543 433432 111 11356778888888 5667899887764
No 42
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=31.00 E-value=44 Score=26.55 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=38.3
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
..++|+|..-+.+. ...+..++..|.+.|++|-+|.++ ..+...+..+-. +.. .++++.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAK-FTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCC-EEEEECc
Confidence 34789877544322 356888999999999999998753 344455555433 344 4444443
No 43
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=30.62 E-value=9.8 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=19.6
Q ss_pred CCceeEEEecccCC---------CchhHHHHHHHHHhcCC
Q 047667 11 HGKYDVFLSFRGED---------TRKSFTGHLYAALKNKG 41 (160)
Q Consensus 11 ~~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~g 41 (160)
+..-|.+++|+... ....|+..|.+.|++.+
T Consensus 14 P~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 14 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34457777766443 22357888888887654
No 44
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=30.55 E-value=34 Score=27.95 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhcCCceEEeeCCCcc----CCCCchHHHHHHHHhcceEE
Q 047667 23 EDTRKSFTGHLYAALKNKGIYVFRDDKELE----KGGSISPELLKAIEESRISI 72 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~----~G~~~~~~i~~~i~~S~~~v 72 (160)
.|.|+.-+..|.+.|.++|..|.+.+--.. .|..+.+.+.+++++++++|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 455666688899999999998888664332 23233456788888998755
No 45
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=29.71 E-value=10 Score=24.62 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=19.3
Q ss_pred CCceeEEEecccCC---------CchhHHHHHHHHHhcCC
Q 047667 11 HGKYDVFLSFRGED---------TRKSFTGHLYAALKNKG 41 (160)
Q Consensus 11 ~~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~g 41 (160)
+..-|.+++|+... ....|+..|.+.|++.+
T Consensus 12 P~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 12 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CSSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 33556666665433 23468888888887644
No 46
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=29.61 E-value=59 Score=26.55 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCCchhHHHHHHHHHhcCCceEEeeCCCcc-------CCCCchHHHHHHHHhcceEEEEee-cCCcCCHH
Q 047667 23 EDTRKSFTGHLYAALKNKGIYVFRDDKELE-------KGGSISPELLKAIEESRISIIVLS-KNYASSTW 84 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~G~~~~~~i~~~i~~S~~~v~vlS-~~~~~S~w 84 (160)
.|.|+.=+-.|.+.|.++|..|.+.+-... ++-.+.+...+++++++.+|++.. +.|.+=.|
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 466766688999999999999888764331 344455567888999987655433 33544333
No 47
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=29.00 E-value=52 Score=27.09 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=38.6
Q ss_pred CceeEEEecccC-C---CchhHHHHHHHHHhcCCceEEeeCC-CccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 12 GKYDVFLSFRGE-D---TRKSFTGHLYAALKNKGIYVFRDDK-ELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~-D---~~~~fv~~L~~~L~~~g~~v~~d~~-dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
..++|+|---+. + .-...+..|.+.|++.|++|-+|.+ +-.+| ..+..+-. +.. .++++.+
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g----~k~~~a~~~G~p-~~iiiG~ 352 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPG----YKFHEWELKGVP-FRVELGP 352 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHH----HHHHHHHHTTCS-EEEEECH
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHH----HHHHHHhhcCCC-EEEEECc
Confidence 347888875443 2 1235688899999999999999986 54444 44444433 334 4444444
No 48
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=28.82 E-value=84 Score=22.20 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred EEecccCCCc--hhHHHHHHHHHhcCCceEEeeC
Q 047667 17 FLSFRGEDTR--KSFTGHLYAALKNKGIYVFRDD 48 (160)
Q Consensus 17 FISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d~ 48 (160)
||.+-|-|.. ...+..|.+.|+++|+++.+-.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7888787753 3457889999999999886644
No 49
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=28.66 E-value=39 Score=22.27 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=16.7
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 047667 134 NNVEKVQTWRDALKTVANKS 153 (160)
Q Consensus 134 ~~~~~~~~W~~al~~i~~~~ 153 (160)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 34788999999999998764
No 50
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=28.07 E-value=1.3e+02 Score=21.88 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=28.0
Q ss_pred CceeEEEecccCCCc--hhHHHHHHHHHhcCCceEEeeC
Q 047667 12 GKYDVFLSFRGEDTR--KSFTGHLYAALKNKGIYVFRDD 48 (160)
Q Consensus 12 ~~ydVFISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d~ 48 (160)
+..-||++|...|.- ...+..+.+.|++.|+++-+..
T Consensus 182 ~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~ 220 (246)
T 4f21_A 182 KGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKH 220 (246)
T ss_dssp TTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEE
Confidence 345699999888863 3457889999999998876543
No 51
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=27.92 E-value=23 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=32.6
Q ss_pred CceeEEEecccC---------CCchhHHHHHHHHHhcCCceEEeeCCCc-cCCCCch
Q 047667 12 GKYDVFLSFRGE---------DTRKSFTGHLYAALKNKGIYVFRDDKEL-EKGGSIS 58 (160)
Q Consensus 12 ~~ydVFISy~~~---------D~~~~fv~~L~~~L~~~g~~v~~d~~dl-~~G~~~~ 58 (160)
..++|.|-=-+. +.-...+..|++.|++.|++|-+|.++- .+|..+.
T Consensus 307 aP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 307 ACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp CSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred CCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 347887754331 1113568889999999999999999863 5665443
No 52
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=27.52 E-value=1.4e+02 Score=19.79 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=17.4
Q ss_pred chHHHHHHHHhcceEEEEeecCCc
Q 047667 57 ISPELLKAIEESRISIIVLSKNYA 80 (160)
Q Consensus 57 ~~~~i~~~i~~S~~~v~vlS~~~~ 80 (160)
+.......+..++.+|+|++-.-.
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCH
T ss_pred hHHHHHHHHhcCCEEEEEEECCCH
Confidence 333455678899999999987643
No 53
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.10 E-value=2.2e+02 Score=22.75 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=42.8
Q ss_pred eEEEecccCCCc-hhHHHHHHHHHhcCCceEEe-eCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667 15 DVFLSFRGEDTR-KSFTGHLYAALKNKGIYVFR-DDKELEKGGSISPELLKAIEESRISIIVLSKNYASST 83 (160)
Q Consensus 15 dVFISy~~~D~~-~~fv~~L~~~L~~~g~~v~~-d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~ 83 (160)
-|-|-|.+--.- +..|..|++.|++.|+.+-+ .-.++...+ ..+|...+.+|+ .|++-||.|.+..
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~--~s~i~~~i~~~~-~ivlGspT~~~~~ 334 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPA--ISEILKDIPDSE-ALIFGVSTYEAEI 334 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCC--HHHHHHHSTTCS-EEEEEECCTTSSS
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCC--HHHHHHHHHhCC-eEEEEeCCcCCcC
Confidence 477777553221 35788999999999987653 222332221 246777777887 6677899987754
No 54
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.21 E-value=43 Score=21.69 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHhhc
Q 047667 134 NNVEKVQTWRDALKTVAN 151 (160)
Q Consensus 134 ~~~~~~~~W~~al~~i~~ 151 (160)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 357889999999998754
No 55
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=26.00 E-value=1.3e+02 Score=21.09 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=27.7
Q ss_pred ceeEEEecccCCCc--hhHHHHHHHHHhcCCceEEeeC
Q 047667 13 KYDVFLSFRGEDTR--KSFTGHLYAALKNKGIYVFRDD 48 (160)
Q Consensus 13 ~ydVFISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d~ 48 (160)
..-||+.|...|.. ...+..+.+.|++.|..+-+..
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ 188 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVV 188 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEE
Confidence 45699999888863 3457789999999998876544
No 56
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=25.82 E-value=38 Score=21.72 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCceE
Q 047667 28 SFTGHLYAALKNKGIYV 44 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v 44 (160)
.|+..|...|.++|++|
T Consensus 10 ~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 10 RYVEQLKQALKTRGVKV 26 (94)
T ss_pred HHHHHHHHHHHHcCeee
Confidence 78999999999999999
No 57
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=25.52 E-value=1.2e+02 Score=25.91 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=38.0
Q ss_pred ceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEee
Q 047667 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLS 76 (160)
Q Consensus 13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS 76 (160)
.++|+|---+.+.....+..|.+.|++.|++|.+|.++ ..+...+..+-. +... ++|+.
T Consensus 545 p~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p~-~iivG 604 (645)
T 1nyr_A 545 PKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIPY-QIVVG 604 (645)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCSE-EEEEC
T ss_pred CceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCCE-EEEEc
Confidence 36887764331222467899999999999999999864 345555655533 4444 44444
No 58
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=25.37 E-value=2e+02 Score=24.88 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=40.8
Q ss_pred ceeEEEecccCC-CchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667 13 KYDVFLSFRGED-TRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN 78 (160)
Q Consensus 13 ~ydVFISy~~~D-~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~ 78 (160)
.++|+|---+.+ .....+..|...|++.|++|.+|.++ ..+...+.++=..---.++++.++
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~~ 621 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDFD 621 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECHH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcch
Confidence 478988765543 23467999999999999999999854 344455555544333345555543
No 59
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.22 E-value=2.1e+02 Score=21.11 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCceEEe-eCCCcc--CCC----CchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHH
Q 047667 28 SFTGHLYAALKNKGIYVFR-DDKELE--KGG----SISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC 95 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~-d~~dl~--~G~----~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~ 95 (160)
..++.+.+.|++.|+.+-+ |-.++. ..+ .-...+.+.|.+++ .|++.||.|..+.- --|..++++
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~sip--a~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGAMT--GIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSSCC--HHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCCcc--HHHHHHHHH
Confidence 4567777778877876543 333332 111 01356778888998 66678999887642 224444443
No 60
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.80 E-value=49 Score=20.87 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 047667 135 NVEKVQTWRDALKTVANK 152 (160)
Q Consensus 135 ~~~~~~~W~~al~~i~~~ 152 (160)
+++....|..||..+..+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 468899999999998765
No 61
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.78 E-value=51 Score=20.46 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 047667 134 NNVEKVQTWRDALKTVANK 152 (160)
Q Consensus 134 ~~~~~~~~W~~al~~i~~~ 152 (160)
++++...+|..||..+++.
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3478899999999988754
No 62
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=24.77 E-value=95 Score=25.23 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=37.6
Q ss_pred CCCchhHHHHHHHHHhcC-CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEee
Q 047667 23 EDTRKSFTGHLYAALKNK-GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLS 76 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~-g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS 76 (160)
.|.|+.=+-.|.+.|.++ |..|.+.+--.... .....+.+++++++.+|++..
T Consensus 330 dD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 330 DDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp CCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred cchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 566777788999999999 99998877443332 333456788999987555433
No 63
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.63 E-value=1.6e+02 Score=19.78 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=39.6
Q ss_pred eEEEecccCCC-chhHHHHHHHHHhcCCceEEeeCCCccCCCC-chHHHHHHHHhcceEEEEeecCCcCC
Q 047667 15 DVFLSFRGEDT-RKSFTGHLYAALKNKGIYVFRDDKELEKGGS-ISPELLKAIEESRISIIVLSKNYASS 82 (160)
Q Consensus 15 dVFISy~~~D~-~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~-~~~~i~~~i~~S~~~v~vlS~~~~~S 82 (160)
.|.|-|.+.-. -+..++.+.+.|++.|+.+-+-+ + .+. -.+++...+.+++ .|++-||.|...
T Consensus 6 kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~--~--~~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 6 SIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVD--L--GAAVDLQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp EEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEE--S--SSCCCHHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEE--C--cCcCCHHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 36666655432 14678999999999998764422 1 111 2345666666676 667779999754
No 64
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=24.56 E-value=15 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=18.3
Q ss_pred ceeEEEecccCC---------CchhHHHHHHHHHhcCC
Q 047667 13 KYDVFLSFRGED---------TRKSFTGHLYAALKNKG 41 (160)
Q Consensus 13 ~ydVFISy~~~D---------~~~~fv~~L~~~L~~~g 41 (160)
.-|.+++|+... ....|+..|.+.|++.+
T Consensus 15 ~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 456666665433 22468888888887654
No 65
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=24.21 E-value=1.6e+02 Score=19.48 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=37.4
Q ss_pred ceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcc--eEEEEeec
Q 047667 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESR--ISIIVLSK 77 (160)
Q Consensus 13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~--~~v~vlS~ 77 (160)
++-|+|.|..........+++...+|+.|+..-+... ....+...--.+|-..|+ +.|-|-+.
T Consensus 5 ~PaI~i~~~~~~~~~~~l~~vl~GIEEEGip~~v~~~--~~~~d~~~lA~~AA~~S~lgVGIGi~~~ 69 (117)
T 1nbw_B 5 PPGVRLFYDPRGHHAGAINELCWGLEEQGVPCQTITY--DGGGDAAALGALAARSSPLRVGIGLSAS 69 (117)
T ss_dssp CCCEEEEECTTSCCHHHHHHHHHHHHHTTCCEEEEEC--TTCCCHHHHHHHHHHHCTTSEEEEECTT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHhhhhhcCCCeEEEEe--CCCCCHHHHHHHHHHhCCCceEEEECCC
Confidence 4668888743332246789999999999998877442 121344343445555444 44444444
No 66
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=24.00 E-value=39 Score=28.97 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=39.6
Q ss_pred ceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667 13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN 78 (160)
Q Consensus 13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~ 78 (160)
.++|+|---+ +.....+..|++.|++.|++|-+|.++ ..+...+.++-..---.++|+.++
T Consensus 539 P~qv~vipi~-~~~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNIT-DSQSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp SSCEEEEESS-HHHHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTT
T ss_pred CceEEEEEeC-HHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 4788776433 222467899999999999999999864 344455555533222245555554
No 67
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=23.50 E-value=38 Score=27.77 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=38.6
Q ss_pred ceeEEEecccCCC--chhHHHHHHHHHhcC--------------CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEee
Q 047667 13 KYDVFLSFRGEDT--RKSFTGHLYAALKNK--------------GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLS 76 (160)
Q Consensus 13 ~ydVFISy~~~D~--~~~fv~~L~~~L~~~--------------g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS 76 (160)
.++|+|.--+.+. ....+..|.+.|++. |++|-+|.++-.+| ..+.++-..---.++++.
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~~~lg----~k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRNEPVG----YRIKSAILKNYSYLIIVG 420 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCSSCHH----HHHHHHHHHTCSEEEEEC
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCCCCHH----HHHHHHHHcCCCEEEEEc
Confidence 4788776433331 236789999999998 99999999754444 455555443333444554
Q ss_pred c
Q 047667 77 K 77 (160)
Q Consensus 77 ~ 77 (160)
+
T Consensus 421 ~ 421 (460)
T 3uh0_A 421 D 421 (460)
T ss_dssp H
T ss_pred c
Confidence 4
No 68
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=23.43 E-value=1.3e+02 Score=24.96 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=39.7
Q ss_pred ceeEEEeccc-CC-CchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667 13 KYDVFLSFRG-ED-TRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN 78 (160)
Q Consensus 13 ~ydVFISy~~-~D-~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~ 78 (160)
.++|+|.--+ ++ .....+..|++.|++.|+++-+|.++ ..+...+..+-..---.++++.++
T Consensus 470 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 470 PFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp SCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEECGG
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEEccc
Confidence 3789887544 22 12356888999999999999999864 344455655544333345555554
No 69
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=23.43 E-value=1.9e+02 Score=22.76 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=36.0
Q ss_pred CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeec
Q 047667 12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSK 77 (160)
Q Consensus 12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~ 77 (160)
..++|+|..-+.+. ...+..++..|++. +++-+|.++- .+...+..+-. +.. .++++.+
T Consensus 327 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~~~----~~~~~~~~a~~~g~p-~~iivG~ 386 (421)
T 1h4v_B 327 KGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALAPR----KPAKGLEEALKRGAA-FAGFLGE 386 (421)
T ss_pred CCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecCCC----CHHHHHHHHHhCCCC-EEEEECc
Confidence 44789886554332 35688899999998 9998887542 33344444433 333 4444544
No 70
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=23.41 E-value=1.3e+02 Score=23.89 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHHHhcCCceEEeeCCCccCCCC-----chHHHHHHHHhcceEEE
Q 047667 23 EDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGS-----ISPELLKAIEESRISII 73 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~-----~~~~i~~~i~~S~~~v~ 73 (160)
.|.|+.=+-.|.+.|.++|..|.+.+--+..... +...+.+++++++.+|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 4567777888999999999988876643432211 12345667777776665
No 71
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=23.35 E-value=20 Score=30.10 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcC-CceEEeeCC-CccCCCCchH
Q 047667 28 SFTGHLYAALKNK-GIYVFRDDK-ELEKGGSISP 59 (160)
Q Consensus 28 ~fv~~L~~~L~~~-g~~v~~d~~-dl~~G~~~~~ 59 (160)
+.+..|.+.|.+. |++|-+|++ +-.+|..+.+
T Consensus 323 ~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ 356 (518)
T 3ial_A 323 GKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYY 356 (518)
T ss_dssp HHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHH
Confidence 5688899999999 999999998 6777765544
No 72
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=23.24 E-value=3.7e+02 Score=23.32 Aligned_cols=78 Identities=10% Similarity=0.176 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC----C------------cCCHHHHHHHHHH
Q 047667 29 FTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN----Y------------ASSTWCLDELAKI 92 (160)
Q Consensus 29 fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~----~------------~~S~wc~~El~~~ 92 (160)
...-|...+...|..+.++..+ . .++..++.++++++|+++... + +.=+..+.||..+
T Consensus 395 ~~~~i~~~~~~~g~~v~~~~~~-----~-~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~ 468 (713)
T 3zyz_A 395 PYDAINTRASSQGTQVTLSNTD-----N-TSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQA 468 (713)
T ss_dssp HHHHHHHHHHTTTCEEEEECSC-----C-HHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHH
T ss_pred HHHHHHHHhccCCeEEEEeCCc-----c-HHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHH
Confidence 3555777777778887766432 2 345566778999999999532 2 2222456677666
Q ss_pred HHHhhcCCccccEEeecCchhh
Q 047667 93 VECKNRKDQILPIFYDVEPTVV 114 (160)
Q Consensus 93 ~~~~~~~~~iiPI~~~~~p~~v 114 (160)
+.. .++++|.|+....|-++
T Consensus 469 v~~--~~~~~VVVl~sG~p~~~ 488 (713)
T 3zyz_A 469 VAG--ANSNVIVVVHSVGAIIL 488 (713)
T ss_dssp HHH--HCSCEEEEEEESSCCCC
T ss_pred HHH--hCCCeEEEEecCCcccc
Confidence 652 45677777776556544
No 73
>3vsj_B 2-amino-5-chlorophenol 1,6-dioxygenase beta subun; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_B 3vsi_B* 3vsg_B*
Probab=23.21 E-value=2.5e+02 Score=21.45 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCCceEEe---eCCCccCCCCchHHHHHHHHhcceEEEEeecCC---cCCHH----HHHHHHHHHHH--
Q 047667 28 SFTGHLYAALKNKGIYVFR---DDKELEKGGSISPELLKAIEESRISIIVLSKNY---ASSTW----CLDELAKIVEC-- 95 (160)
Q Consensus 28 ~fv~~L~~~L~~~g~~v~~---d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~---~~S~w----c~~El~~~~~~-- 95 (160)
+++.+|.+.|...|+.+-. ..+.+..|-.+.=.... ...++-||-+|-+. ..+.- -..+|..++..
T Consensus 101 eLA~~i~~~l~~~g~~~~~~~~~~~~lDHG~~vpL~~l~--p~~~~pVVpis~~~~p~~~~~~~~~~~~~~lG~aL~~~~ 178 (312)
T 3vsj_B 101 ELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIR--PQWDIPVVGISANNSPYYLNTKEGMSEMDVLGKATREAI 178 (312)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHC--TTCCSCEEEEEEESHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceeeccCccccCCcchHhHHHHhC--CCCCCCEEEEeecCCCCCCChhhhHHHHHHHHHHHHHHH
Confidence 7899999999999998864 23444444322211111 35667777777552 13333 45678888875
Q ss_pred hhcCCccccEE
Q 047667 96 KNRKDQILPIF 106 (160)
Q Consensus 96 ~~~~~~iiPI~ 106 (160)
+..+.+|+.|-
T Consensus 179 ~~~d~~Vlii~ 189 (312)
T 3vsj_B 179 RKTGRKAVLLA 189 (312)
T ss_dssp HHHTCEEEEEE
T ss_pred HhcCCCEEEEE
Confidence 33456666554
No 74
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=23.04 E-value=49 Score=21.30 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=25.7
Q ss_pred eEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCc
Q 047667 15 DVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKEL 51 (160)
Q Consensus 15 dVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl 51 (160)
+----|+..|. -.+..+...|+..||.+|+-+..+
T Consensus 22 ~M~eL~ra~d~--v~a~~~k~LLe~aGI~~fv~De~m 56 (97)
T 2hfv_A 22 HLRELLRTNDA--VLLSAVGALLDGADIGHLVLDQNM 56 (97)
T ss_dssp SEEEEEEECCH--HHHHHHHHHHHHTTCCEECCSCCC
T ss_pred cceeeeecCCH--HHHHHHHHHHHhCCCCEEEcCCcc
Confidence 44444566664 458888888999999999988644
No 75
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=22.94 E-value=16 Score=24.35 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=19.9
Q ss_pred CCceeEEEecccCC---------CchhHHHHHHHHHhcCC
Q 047667 11 HGKYDVFLSFRGED---------TRKSFTGHLYAALKNKG 41 (160)
Q Consensus 11 ~~~ydVFISy~~~D---------~~~~fv~~L~~~L~~~g 41 (160)
+..-|.+++|+..+ ....|+..|.+.|++.+
T Consensus 13 P~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 13 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp CSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 44567777776543 22467888888887654
No 76
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=22.92 E-value=1.7e+02 Score=22.81 Aligned_cols=58 Identities=10% Similarity=0.157 Sum_probs=31.7
Q ss_pred EEEecccCCCchh---HHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHH-hcceEEEE
Q 047667 16 VFLSFRGEDTRKS---FTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIE-ESRISIIV 74 (160)
Q Consensus 16 VFISy~~~D~~~~---fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~v 74 (160)
|.|-|...+-.+. ++..|.++|++.|+.+-.... +..+..-...+...|+ +.+++|+.
T Consensus 157 v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~d~~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 157 AALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSF-DETKDLDLEDIVRNIQASERVVIMC 218 (441)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEE-CTTSCCCHHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEe-cCCcccCHHHHHHHhhcCCcEEEEe
Confidence 5555654443345 788899999998987754331 2223222344455554 44444443
No 77
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.83 E-value=1.2e+02 Score=19.55 Aligned_cols=12 Identities=0% Similarity=-0.000 Sum_probs=6.0
Q ss_pred hHHHHHHHHhcc
Q 047667 58 SPELLKAIEESR 69 (160)
Q Consensus 58 ~~~i~~~i~~S~ 69 (160)
...+.+.+++..
T Consensus 96 ~~~l~~~l~~~G 107 (138)
T 5nul_A 96 MRDFEERMNGYG 107 (138)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 345555555443
No 78
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=22.75 E-value=2.5e+02 Score=21.56 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=44.0
Q ss_pred eEEEecccCCCc-hhHHHHHHHHHhcCCceEEe-eCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHH
Q 047667 15 DVFLSFRGEDTR-KSFTGHLYAALKNKGIYVFR-DDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKI 92 (160)
Q Consensus 15 dVFISy~~~D~~-~~fv~~L~~~L~~~g~~v~~-d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~ 92 (160)
.+.|.|.+.... +..++.+.+.|.+.|+.+-+ +-.+. -.+.+...+.+++ .|++.||.|..+.-- .+..+
T Consensus 258 k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-----~~~~~~~~l~~~d-~iiigsP~y~~~~~~--~~k~~ 329 (404)
T 2ohh_A 258 RVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-----DRSEIVKDILESG-AIALGAPTIYDEPYP--SVGDL 329 (404)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-----CHHHHHHHHHTCS-EEEEECCEETTEECT--HHHHH
T ss_pred cEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-----CHHHHHHHHHHCC-EEEEECccccccchH--HHHHH
Confidence 456666554321 46788889999888876633 32221 2345667788777 666778888766432 24444
Q ss_pred HHH
Q 047667 93 VEC 95 (160)
Q Consensus 93 ~~~ 95 (160)
++.
T Consensus 330 ld~ 332 (404)
T 2ohh_A 330 LMY 332 (404)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 79
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.65 E-value=1.8e+02 Score=18.82 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=33.1
Q ss_pred EEEecccCCC-chhHHHHHHHHHhcCCceEEe-eCCCccCCCCchHHHHHHHH-hcceEEEEeecCCcC
Q 047667 16 VFLSFRGEDT-RKSFTGHLYAALKNKGIYVFR-DDKELEKGGSISPELLKAIE-ESRISIIVLSKNYAS 81 (160)
Q Consensus 16 VFISy~~~D~-~~~fv~~L~~~L~~~g~~v~~-d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~~~~~ 81 (160)
+.|-|.+... -+.+++.|.+.|++.|+.+-+ +-.+..+.+ +. +.+ .|++.+|.|..
T Consensus 4 i~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~---------l~~~~d-~ii~g~pty~~ 62 (148)
T 3f6r_A 4 VLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAEN---------LADGYD-AVLFGCSAWGM 62 (148)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT---------TTTTCS-EEEEEECEECS
T ss_pred EEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH---------hcccCC-EEEEEecccCC
Confidence 4455544322 147899999999999986644 333332221 12 334 67777888874
No 80
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=20.64 E-value=2.3e+02 Score=19.94 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667 29 FTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASST 83 (160)
Q Consensus 29 fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~ 83 (160)
+++.+.+.|++.|..+-+-+ +..++. .+++.+.|..++ .|++.+|-|-.+.
T Consensus 35 l~~~~~~~~~~~g~~v~~~d--L~~~~d-~~~~~~~l~~AD-~iV~~~P~y~~s~ 85 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVR--ADSDYD-VKAEVQNFLWAD-VVIWQMPGWWMGA 85 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEE--SSSCCC-HHHHHHHHHHCS-EEEEEEECBTTBC
T ss_pred HHHHHHHHHHHcCCEEEEEe--CCcccc-HHHHHHHHHhCC-EEEEECCccccCC
Confidence 45666667777786654322 222344 457788899999 6667888887653
No 81
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.55 E-value=69 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 047667 134 NNVEKVQTWRDALKTVANKS 153 (160)
Q Consensus 134 ~~~~~~~~W~~al~~i~~~~ 153 (160)
++++..+.|..||..+...+
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~ 116 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTP 116 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHcCC
Confidence 34788999999999987754
No 82
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.39 E-value=1.8e+02 Score=18.66 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=48.7
Q ss_pred EEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHHh
Q 047667 17 FLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECK 96 (160)
Q Consensus 17 FISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~~ 96 (160)
-+-|+ .|. +-...+.+-..++|+++-.-. .-..+.+.|.+-+.+-..+|+++-- -..+|....+... +
T Consensus 5 ivvfs-tde--etlrkfkdiikkngfkvrtvr----spqelkdsieelvkkynativvvvv--ddkewaekairfv---k 72 (134)
T 2l69_A 5 IVVFS-TDE--ETLRKFKDIIKKNGFKVRTVR----SPQELKDSIEELVKKYNATIVVVVV--DDKEWAEKAIRFV---K 72 (134)
T ss_dssp EEECC-CCH--HHHHHHHHHHHHTTCEEEEEC----SHHHHHHHHHHHTTCCCCEEEEEEC--SSHHHHHHHHHHH---H
T ss_pred EEEEe-CCH--HHHHHHHHHHHhcCceEEEec----CHHHHHHHHHHHHHHhCCeEEEEEE--ccHHHHHHHHHHH---H
Confidence 34454 342 557778888899999986543 2223344555555544444433322 1236755444333 4
Q ss_pred hcCCccccEEeecCchhh
Q 047667 97 NRKDQILPIFYDVEPTVV 114 (160)
Q Consensus 97 ~~~~~iiPI~~~~~p~~v 114 (160)
..+..++.|+|+-+...+
T Consensus 73 slgaqvliiiydqdqnrl 90 (134)
T 2l69_A 73 SLGAQVLIIIYDQDQNRL 90 (134)
T ss_dssp HHCCCCEEEEECSCHHHH
T ss_pred hcCCeEEEEEEeCchhHH
Confidence 568888888888555443
No 83
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=20.38 E-value=66 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHhh
Q 047667 135 NVEKVQTWRDALKTVA 150 (160)
Q Consensus 135 ~~~~~~~W~~al~~i~ 150 (160)
+++....|..||..++
T Consensus 93 s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 93 TPKERTEWIKAIQMAS 108 (109)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4688999999999875
No 84
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=20.33 E-value=89 Score=25.77 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHhcCCceEEeeCCCcc--CCCCchHHHHHHHHhcceEEEE
Q 047667 23 EDTRKSFTGHLYAALKNKGIYVFRDDKELE--KGGSISPELLKAIEESRISIIV 74 (160)
Q Consensus 23 ~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~--~G~~~~~~i~~~i~~S~~~v~v 74 (160)
.|.|+.=+-.|.+.|.++|..|.+.+--.. ++..+...+.+++++++.+|++
T Consensus 368 dD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~ 421 (478)
T 3g79_A 368 DDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVL 421 (478)
T ss_dssp SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEEC
T ss_pred cchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEe
Confidence 466766688999999999999888763332 2233345678889999875553
No 85
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=20.24 E-value=1.3e+02 Score=24.84 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=38.5
Q ss_pred ceeEEEecccC-C-CchhHHHHHHHHHhcCC-ceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667 13 KYDVFLSFRGE-D-TRKSFTGHLYAALKNKG-IYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK 77 (160)
Q Consensus 13 ~ydVFISy~~~-D-~~~~fv~~L~~~L~~~g-~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~ 77 (160)
.++|+|---++ + .....+..|...|++.| +++.+|.+ ..+...+.++=..---.++++.+
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-----~sig~k~~~ad~~g~p~~iivG~ 460 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-----GNIGKAYRRHDEVGTPFAVTVDY 460 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-----SCHHHHHHHHHHTTCSEEEEECH
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-----CCHHHHHHHHHHCCCCEEEEECh
Confidence 48898875444 1 12456889999999999 99998874 24555555554433334444544
No 86
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=20.18 E-value=2e+02 Score=19.64 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCceEEe-eCCCccCC-------------CCchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667 27 KSFTGHLYAALKNKGIYVFR-DDKELEKG-------------GSISPELLKAIEESRISIIVLSKNYASST 83 (160)
Q Consensus 27 ~~fv~~L~~~L~~~g~~v~~-d~~dl~~G-------------~~~~~~i~~~i~~S~~~v~vlS~~~~~S~ 83 (160)
+..++.+.+.|++.|..+-+ +-.+..+. ..+. . .+.+.+++ .|++-||-|..+.
T Consensus 18 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~-~-~~~l~~aD-~ii~gsP~y~~~~ 85 (199)
T 2zki_A 18 VELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEV-T-LDDMRWAD-GFAIGSPTRYGNM 85 (199)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBC-C-HHHHHHCS-EEEEEEECBTTBC
T ss_pred HHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccc-c-HHHHHhCC-EEEEECCccccCc
Confidence 45678888888877876533 33332111 0121 2 45677777 5577899988763
Done!