BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047670
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 68 NYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDV 127
NYYP CPQP+L +G+ HTD AL +L + GLQ WV K VP ++V+ IGD
Sbjct: 215 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDT 274
Query: 128 FQILSNDEYKSMDHRALANSFREARVSAVVFFAP 161
+ILSN +YKS+ HR L N + R+S VF P
Sbjct: 275 LEILSNGKYKSILHRGLVNK-EKVRISWAVFCEP 307
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 68 NYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDV 127
NYYP CPQP+L +G+ HTD AL +L + GLQ WV K VP ++V+ IGD
Sbjct: 214 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDT 273
Query: 128 FQILSNDEYKSMDHRALANSFREARVSAVVFFAP 161
+ILSN +YKS+ HR L N + R+S VF P
Sbjct: 274 LEILSNGKYKSILHRGLVNK-EKVRISWAVFCEP 306
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 68 NYYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGALVVDIGDV 127
NYYP CPQP+L +G+ HTD AL +L + GLQ WV K VP ++V IGD
Sbjct: 215 NYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDT 274
Query: 128 FQILSNDEYKSMDHRALANSFREARVSAVVFFAP 161
+ILSN +YKS+ HR L N + R+S VF P
Sbjct: 275 LEILSNGKYKSILHRGLVNK-EKVRISWAVFCEP 307
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 70 YPYCPQPDLTVGIPFHTDPGALAILLQDHH-GGLQCKCGDDWVDVKPVPGALVVDIGDVF 128
YP CP+PDL G+ HTD G + +L QD GLQ W+DV P ++VV++GD
Sbjct: 162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQL 221
Query: 129 QILSNDEYKSMDHRALANSFREARVSAVVFFAP 161
++++N +YKS+ HR +A AR S F+ P
Sbjct: 222 EVITNGKYKSVXHRVIAQK-DGARXSLASFYNP 253
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 69 YYPYCPQPDLTVGIPFHTDPGALAILLQDHHGGLQCKCGD-DWVDVKPVPGALVVDIGDV 127
+YP P+ V H D + +LL GGL+ D W+ + P PG LV++IGD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDX 234
Query: 128 FQILSNDEYKSMDHRAL 144
+ L+N+ S HR +
Sbjct: 235 LERLTNNVLPSTVHRVV 251
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 85 HTDPGALAILLQDHHGGLQCKCGD-DWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRA 143
H D + +L + GLQ K D W+DV G ++++IGD Q S+ + S HR
Sbjct: 174 HEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRV 233
Query: 144 L---ANSFREARVSAVVFFAP 161
+ ++R+S +F P
Sbjct: 234 INPEGTDKTKSRISLPLFLHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 70 YPYC-PQPDLTV---------GIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGA 119
YPY P P+ + +H D + +L Q + LQ + + D++
Sbjct: 189 YPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTG 248
Query: 120 LVVDIGDVFQILSNDEYKSMDHR 142
+++ G L+N+ YK+ HR
Sbjct: 249 YLINCGSYMAHLTNNYYKAPIHR 271
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 70 YPYC-PQPDLTV---------GIPFHTDPGALAILLQDHHGGLQCKCGDDWVDVKPVPGA 119
YPY P P+ + +H D + +L Q + LQ + + D++
Sbjct: 189 YPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTG 248
Query: 120 LVVDIGDVFQILSNDEYKSMDHR 142
+++ G L+N+ YK+ HR
Sbjct: 249 YLINCGSYMAHLTNNYYKAPIHR 271
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 112 DVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSFREARV 153
D KP+PG V DIG F N Y SMD+ L SF R+
Sbjct: 232 DHKPLPGVTVGDIGMKF---GNGAYNSMDNGVL--SFDHVRI 268
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 127 VFQILSNDEYKSMDHRALANSFREARVSAVVFF 159
VF+ + ND K MD R + N+ R ++ V +F
Sbjct: 81 VFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYF 113
>pdb|2ZLY|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, D370y
Mutant
Length = 392
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 99 HGGLQC------KCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSF 148
HGG+ C + G +D PG VV V ++L+ +++M + N+F
Sbjct: 266 HGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTF 321
>pdb|2ZM8|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, S112aD370Y
MUTANT Complexed With 6-Aminohexanoate-Dimer
Length = 392
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 99 HGGLQC------KCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSF 148
HGG+ C + G +D PG VV V ++L+ +++M + N+F
Sbjct: 266 HGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTF 321
>pdb|1WYB|A Chain A, Structure Of 6-aminohexanoate-dimer Hydrolase
Length = 392
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 99 HGGLQC------KCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSF 148
HGG+ C + G +D PG VV V ++L+ +++M + N+F
Sbjct: 266 HGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTF 321
>pdb|2ZM7|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, S112aG181D
MUTANT Complexed With 6-Aminohexanoate-Dimer
Length = 392
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 99 HGGLQC------KCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSF 148
HGG+ C + G +D PG VV V ++L+ +++M + N+F
Sbjct: 266 HGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTF 321
>pdb|2E8I|A Chain A, Structure Of 6-Aminohexanoate-Dimer Hydrolase, D1 Mutant
Length = 392
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 99 HGGLQC------KCGDDWVDVKPVPGALVVDIGDVFQILSNDEYKSMDHRALANSF 148
HGG+ C + G +D PG VV V ++L+ +++M + N+F
Sbjct: 266 HGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTF 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,002,546
Number of Sequences: 62578
Number of extensions: 180647
Number of successful extensions: 309
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 15
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)