BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047672
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
pdb|1PXZ|B Chain B, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major
Allergen From Cedar Pollen
Length = 346
Score = 301 bits (770), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 199/343 (58%), Gaps = 7/343 (2%)
Query: 43 NVIDSCWRAKSNWAVNRKALTDCVVXXXXXXXXXXXXAIYVVTDPSDDPVNPKLGTLRYG 102
N IDSCWR SNW NR L DC V Y VT D+PVNP GTLRYG
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61
Query: 103 VIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANG-PCITIQXXXXXXXXXX 161
+ K LWIIF+++M I+LK L + KTIDGRGA V + NG PC+ ++
Sbjct: 62 ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121
Query: 162 XXXDCKPGKSGQVRSSPDHVGRR--GGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIH 219
C G V S + +G DGDAI + + W+DH L+ +DGLIDV
Sbjct: 122 HIHGCNTSVLGDVLVS-ESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180
Query: 220 ASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHV 279
ST +TISNN F H KVMLLGH+D + DK MKVT+AFN FGP +RMPR R G HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240
Query: 280 ANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKR---ESYGGWKSWKWRTSK 336
ANN Y+ W +YAIGGS+NPTI SEGN F A ++ KEVTKR ES +W WR+++
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300
Query: 337 DVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAG 379
D F+NGAYFV SG Y+ ++F V G P LT NAG
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAG 343
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The
Pectate Lyase From Thermotoga Maritima
Length = 340
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 14/135 (10%)
Query: 188 DGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQ-- 245
D D I++ S ++W+DH DG +D+ S +T+S N F HDKV L+G +D+
Sbjct: 115 DFDYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKED 174
Query: 246 -FTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYED----------WKMYAIGG 294
A + KVT N+F LI+RMPR+R G AHV NN Y + +Y +
Sbjct: 175 PEQAGQAYKVTYHHNYF-KNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233
Query: 295 SANPTIFSEGNYFMA 309
+ + EGNYFM
Sbjct: 234 AMGAKVHVEGNYFMG 248
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47
Length = 416
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 25/145 (17%)
Query: 187 SDGDAIDIFASSYVWVDH--------------CYLAR---AADGLIDVIHASTAVTISNN 229
S+ D+I I SS++W+DH Y R DG +D+ ++S +TIS N
Sbjct: 187 SEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYN 246
Query: 230 CFEQHDKVMLLGHNDQFTADK-IMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYE--- 285
F HDKV L+G +D AD ++VT+ N++ + +R+PRVR G H+ NN YE
Sbjct: 247 VFTNHDKVTLIGASDSRMADSGHLRVTLHHNYY-KNVTQRLPRVRFGQVHIYNNYYEFSN 305
Query: 286 --DWKM-YAIGGSANPTIFSEGNYF 307
D+ YA G I+++ NYF
Sbjct: 306 LADYDFQYAWGVGVFSQIYAQNNYF 330
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 32/218 (14%)
Query: 190 DAIDIF-ASSYVWVDHCYLARA-----------------ADGLIDVIHASTAVTISNNCF 231
DA++I + +VW+DH ++ DG +D+ S VTISN+
Sbjct: 144 DAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLI 203
Query: 232 EQHDKVMLLGHNDQFTADKIMKVTIA-FNHFGPGLIERMPRVRIGYAHVANNRYE-DWK- 288
+QHDK ML+GHND +A K+ + FN+ + ER PRVR G H NN ++ D K
Sbjct: 204 DQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKD 263
Query: 289 -----MYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGA 343
Y+ G + ++ SEGN F +N +K + + G + LNG+
Sbjct: 264 PVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNG----SIFSDNGSVLNGS 319
Query: 344 YFVPSGYGSCAPNYSRAQSFVVAP--GAMVPALTANAG 379
SG G A + V P + ++T NAG
Sbjct: 320 AVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAG 357
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In
Pectate Lyases
Length = 355
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 190 DAIDIFASSYVWVDHCYLARAA-----------------DGLIDVIHASTAVTISNNCFE 232
DA I S+ VWVDH ++ + DG +D+ S VTIS + FE
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 233 QHDKVMLLGHNDQFTADKIMKVTIAF-NHFGPGLIERMPRVRIGYAHVANNRY-EDWK-- 288
HDK +L+GH+D + K+ + F N+ + ER PRVR G H NN Y D K
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHS 253
Query: 289 ----MYAIGGSANPTIFSEGNYFMASN 311
+Y+ G + +I SE N F SN
Sbjct: 254 VYPYLYSFGLGTSGSILSESNSFTLSN 280
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 26/148 (17%)
Query: 190 DAIDIF-ASSYVWVDHCYLARA-----------------ADGLIDVIHASTAVTISNNCF 231
DA++I + +VW+DH ++ DG +D+ S VTISN+
Sbjct: 144 DAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLI 203
Query: 232 EQHDKVMLLGHNDQFTADKIMKVTIA-FNHFGPGLIERMPRVRIGYAHVANNRYE-DWK- 288
+QHDK ML+GH+D + K+ + FN+ + ER PRVR G H NN ++ D K
Sbjct: 204 DQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKD 263
Query: 289 -----MYAIGGSANPTIFSEGNYFMASN 311
Y+ G + ++ SEGN F +N
Sbjct: 264 PVYRYQYSFGIGTSGSVLSEGNSFTIAN 291
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase
Length = 420
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 190 DAIDIFASSYVWVDHC--------------YLARA---ADGLIDVIHASTAVTISNNCFE 232
D I I +++W+DHC Y R DG D + + +T+S N +
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 233 QHDKVMLLGHNDQFTADK-IMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYE 285
HDK + G +D T+D +K+T+ N + +++R PRVR G HV NN YE
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYE 317
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant
Length = 420
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 19/114 (16%)
Query: 190 DAIDIFASSYVWVDHC--------------YLARA---ADGLIDVIHASTAVTISNNCFE 232
D I I +++W+DHC Y R DG D + + +T+S N +
Sbjct: 205 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 264
Query: 233 QHDKVMLLGHNDQFTADK-IMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYE 285
HDK + G +D T+D +K+T+ N + ++++ PRVR G HV NN YE
Sbjct: 265 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQKAPRVRFGQVHVYNNYYE 317
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The
Anti Beta-Elimination Mechanism Of Pectate Lyase
Length = 399
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 19/114 (16%)
Query: 190 DAIDIFASSYVWVDHC--------------YLARA---ADGLIDVIHASTAVTISNNCFE 232
D I I +++W+DHC Y R DG D + + +T+S N +
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 233 QHDKVMLLGHNDQFTADK-IMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYE 285
HD + G +D T+D +K+T+ N + +++R PRVR G HV NN YE
Sbjct: 244 DHDASSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQRAPRVRFGQVHVYNNYYE 296
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase
pdb|2O04|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Ii
pdb|2O0V|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iii
pdb|2O0W|A Chain A, Pectate Lyase Bound To Hexasaccharide Compound Iv
pdb|2O17|A Chain A, Pectate Lyase Bound To Hexasaccharide
pdb|2O1D|A Chain A, Pectate Lyase Bound To Trisaccharide
Length = 399
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 19/114 (16%)
Query: 190 DAIDIFASSYVWVDHC--------------YLARA---ADGLIDVIHASTAVTISNNCFE 232
D I I +++W+DHC Y R DG D + + +T+S N +
Sbjct: 184 DNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYH 243
Query: 233 QHDKVMLLGHNDQFTADK-IMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYE 285
HDK + G +D T+D +K+T+ N + +++ PRVR G HV NN YE
Sbjct: 244 DHDKSSIFGSSDSKTSDDGKLKITLHHNRY-KNIVQAAPRVRFGQVHVYNNYYE 296
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 180 HVGRRGGSDGDAIDIFASSY-VWVDHCYL---------ARAADGLIDVIHASTAVTISNN 229
H R G +G AI++ S VW+DH + DGL+D+ + +T+S N
Sbjct: 113 HHVREG--EGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWN 170
Query: 230 CFEQHDKVMLLGHNDQ--FTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDW 287
FE H K ML+GH D DKI T N+F L R+P +R H+ NN ++D
Sbjct: 171 KFENHWKTMLVGHTDNASLAPDKI---TYHHNYFN-NLNSRVPLIRYADVHMFNNYFKDI 226
Query: 288 KMYAIGGSANPTIFSEGNYF 307
AI +F E NYF
Sbjct: 227 NDTAINSRVGARVFVENNYF 246
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris
pdb|2QXZ|B Chain B, Pectate Lyase R236f From Xanthomonas Campestris
Length = 330
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 184 RGGSDGDAIDIFASSY-----VWVDH---------CYLARAA--DGLIDVIHASTAVTIS 227
+GG D D+I + +S +WVDH C A A DG ID+ VT+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 228 NNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDW 287
N + KV L G++D T + + T N F + R+P R G +H+ NN + +
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNV 226
Query: 288 KMYAIGGSANPTIFSEGNYFMASNDQNTKE-VTKRES 323
I E NYF +N K VT R+S
Sbjct: 227 TTSGINVRMGGIAKIESNYF-----ENIKNPVTSRDS 258
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris
pdb|2QY1|B Chain B, Pectate Lyase A31g/r236f From Xanthomonas Campestris
Length = 330
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 184 RGGSDGDAIDIFASSY-----VWVDH---------CYLARAA--DGLIDVIHASTAVTIS 227
+GG D D+I + +S +WVDH C A A DG ID+ VT+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 228 NNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDW 287
N + KV L G++D T + + T N F + R+P R G +H+ NN + +
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRFGLSHIYNNYFNNV 226
Query: 288 KMYAIGGSANPTIFSEGNYFMASNDQNTKE-VTKRES 323
I E NYF +N K VT R+S
Sbjct: 227 TTSGINVRMGGIAKIESNYF-----ENIKNPVTSRDS 258
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
pdb|2QX3|B Chain B, Structure Of Pectate Lyase Ii From Xanthomonas Campestris
Pv. Campestris Str. Atcc 33913
Length = 330
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 184 RGGSDGDAIDIFASSY-----VWVDH---------CYLARAA--DGLIDVIHASTAVTIS 227
+GG D D+I + +S +WVDH C A A DG ID+ VT+S
Sbjct: 108 QGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVS 167
Query: 228 NNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDW 287
N + KV L G++D T + + T N F + R+P R G +H+ NN + +
Sbjct: 168 YNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRF-ENVESRVPLQRRGLSHIYNNYFNNV 226
Query: 288 KMYAIGGSANPTIFSEGNYFMASNDQNTKE-VTKRES 323
I E NYF +N K VT R+S
Sbjct: 227 TTSGINVRMGGIAKIESNYF-----ENIKNPVTSRDS 258
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion
In The Putative Calcium Binding Site
pdb|1O88|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
30mm Ca2+
pdb|1O8D|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
5mm Ca2+
pdb|1O8E|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 11.2 With
1mm Ca2+
pdb|1O8F|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
30mm Ca2+
pdb|1O8G|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
5mm Ca2+
pdb|1O8H|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
0.3mm Ca2+ Added
pdb|1O8I|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 9.5 With
No Ca2+ Added
pdb|1O8J|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
30mm Ca2+
pdb|1O8K|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
20mm Ca2+
pdb|1O8L|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
5mm Ca2+
pdb|1O8M|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi At Ph 4.5 With
No Ca2+ Added
pdb|1AIR|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi (Ec16) To A
Resolution Of 2.2 Angstroms With 128 Waters
pdb|2PEC|A Chain A, The Refined Three-Dimensional Structure Of Pectate Lyase C
From Erwinia Chrysanthemi At 2.2 Angstroms Resolution:
Implications For An Enzymatic Mechanism
Length = 353
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 185 GGSDGDAIDIFASSYVWVDHCYLARA---ADGL----------IDVIHASTAVTISNNCF 231
G DGD I + S VWVDH L A DG +D+ AS VT+S N
Sbjct: 126 GAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYI 185
Query: 232 EQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYA 291
KV L G + ++D +T N++ + R+P R G H NN Y +
Sbjct: 186 HGVKKVGLDGSS---SSDTGRNITYHHNYYND-VNARLPLQRGGLVHAYNNLYTNITGSG 241
Query: 292 IGGSANPTIFSEGNYFMASNDQNTKEVTKR---ESYGGW 327
+ N E N+F ++ VT R +++G W
Sbjct: 242 LNVRQNGQALIENNWF----EKAINPVTSRYDGKNFGTW 276
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In
Complex With Pentagalacturonic Acid
Length = 353
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 185 GGSDGDAIDIFASSYVWVDHCYLARA---ADGL----------IDVIHASTAVTISNNCF 231
G DGD I + S VWVDH L A DG +D+ AS VT+S N
Sbjct: 126 GAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYI 185
Query: 232 EQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYA 291
KV L G + ++D +T N++ + ++P R G H NN Y +
Sbjct: 186 HGVKKVGLDGSS---SSDTGRNITYHHNYYND-VNAKLPLQRGGLVHAYNNLYTNITGSG 241
Query: 292 IGGSANPTIFSEGNYFMASNDQNTKEVTKR---ESYGGW 327
+ N E N+F ++ VT R +++G W
Sbjct: 242 LNVRQNGQALIENNWF----EKAINPVTSRYDGKNFGTW 276
>pdb|1QCX|A Chain A, Pectin Lyase B
Length = 359
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 189 GDAIDIFASSYVWVDHCYLARAADGLIDV-IHASTAVTISNNCFEQHDK----------- 236
GDAI + S VW+DH AR I + A VTIS + +
Sbjct: 153 GDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYW 212
Query: 237 -VMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIG-YAHVANNRYEDWKMYAIGG 294
V L G ND VT+ N+F L RMP+V+ H NN + ++ +A
Sbjct: 213 GVYLDGSNDM--------VTLKGNYF-YNLSGRMPKVQGNTLLHAVNNLFHNFDGHAFEI 263
Query: 295 SANPTIFSEGNYFMASN 311
+ +EGN F N
Sbjct: 264 GTGGYVLAEGNVFQDVN 280
>pdb|1T5Y|A Chain A, Crystal Structure Of Northeast Structural Genomics
Consortium Target Hr2118: A Human Homolog Of
Saccharomyces Cerevisiae Nip7p
Length = 190
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 324 YGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVP 372
Y +K W ++ FL G + + SG G N S+ Q VV A +P
Sbjct: 102 YAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSXADIP 150
>pdb|2INU|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INV|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
Length = 410
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 27/91 (29%)
Query: 180 HVGRRG---GSDGDAIDIFASSYVWVDHCYLARAADGL-------------IDVIHASTA 223
H G+ G SD D+ I +V+++H + R AD L +++ A A
Sbjct: 158 HNGKTGIEVASDNDSFHITGXGFVYLEHALIVRGADALRVNDNXIAECGNCVELTGAGQA 217
Query: 224 VTISNN-----------CFEQHDKVMLLGHN 243
+S N E H+ +++ G+N
Sbjct: 218 TIVSGNHXGAGPDGVTLLAENHEGLLVTGNN 248
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 101 YGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGR-GAKVE 141
Y T P W+ ++ + ++RL E + + F+TI + GA V+
Sbjct: 188 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 229
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 101 YGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGR-GAKVE 141
Y T P W+ ++ + ++RL E + + F+TI + GA V+
Sbjct: 185 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 226
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 101 YGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGR-GAKVE 141
Y T P W+ ++ + ++RL E + + F+TI + GA V+
Sbjct: 185 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQ 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,111,462
Number of Sequences: 62578
Number of extensions: 439473
Number of successful extensions: 836
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 24
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)