Query 047672
Match_columns 389
No_of_seqs 239 out of 946
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 4.8E-61 1E-65 461.8 24.6 276 71-381 46-342 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 1.9E-53 4.1E-58 396.0 14.6 191 107-307 1-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 5.6E-50 1.2E-54 370.1 20.7 171 123-310 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 98.8 2.4E-07 5.2E-12 92.3 18.9 199 100-312 2-244 (314)
5 PF14592 Chondroitinas_B: Chon 98.4 6.4E-06 1.4E-10 84.9 14.5 203 99-309 7-256 (425)
6 PF13229 Beta_helix: Right han 98.2 2E-05 4.3E-10 67.8 11.8 133 147-311 2-138 (158)
7 PLN02218 polygalacturonase ADP 98.2 6.5E-05 1.4E-09 78.1 16.4 122 147-289 217-342 (431)
8 TIGR03808 RR_plus_rpt_1 twin-a 98.1 0.00029 6.4E-09 73.1 18.9 183 99-311 57-284 (455)
9 PLN03003 Probable polygalactur 98.0 8.4E-05 1.8E-09 77.7 13.9 83 186-272 185-268 (456)
10 PLN02188 polygalacturonase/gly 98.0 0.00017 3.7E-09 74.5 15.8 99 147-265 180-279 (404)
11 PLN02155 polygalacturonase 98.0 0.00019 4E-09 74.0 15.0 98 187-288 193-295 (394)
12 TIGR03805 beta_helix_1 paralle 97.9 0.00065 1.4E-08 67.9 17.3 161 129-294 63-249 (314)
13 PLN02793 Probable polygalactur 97.9 0.00024 5.2E-09 74.2 14.7 105 147-272 202-307 (443)
14 PLN03010 polygalacturonase 97.9 0.00087 1.9E-08 69.4 17.8 98 187-288 205-306 (409)
15 PF00295 Glyco_hydro_28: Glyco 97.7 0.00053 1.1E-08 68.7 13.4 123 146-289 116-242 (326)
16 PLN02218 polygalacturonase ADP 97.7 0.0025 5.5E-08 66.4 18.2 135 147-312 194-347 (431)
17 PF13229 Beta_helix: Right han 97.6 0.00098 2.1E-08 57.2 11.2 130 146-307 24-158 (158)
18 PF01696 Adeno_E1B_55K: Adenov 97.5 0.0096 2.1E-07 61.0 18.7 175 99-312 57-242 (386)
19 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0037 8.1E-08 65.1 15.9 164 130-311 121-334 (455)
20 PF12708 Pectate_lyase_3: Pect 97.4 0.012 2.6E-07 53.9 16.9 176 99-311 21-221 (225)
21 PLN03003 Probable polygalactur 97.4 0.0081 1.7E-07 63.1 17.5 144 108-287 104-262 (456)
22 PF05048 NosD: Periplasmic cop 97.4 0.0062 1.3E-07 57.5 14.8 106 190-307 58-165 (236)
23 PF05048 NosD: Periplasmic cop 97.3 0.0039 8.4E-08 58.8 12.4 129 147-310 15-144 (236)
24 PLN02480 Probable pectinestera 97.1 0.0098 2.1E-07 60.3 14.2 118 98-233 62-197 (343)
25 PLN03010 polygalacturonase 97.1 0.029 6.3E-07 58.3 17.6 137 147-312 159-312 (409)
26 PF00295 Glyco_hydro_28: Glyco 97.0 0.012 2.6E-07 58.9 13.6 107 125-261 62-183 (326)
27 PLN02155 polygalacturonase 97.0 0.037 8.1E-07 57.2 17.0 142 109-287 107-269 (394)
28 PLN02793 Probable polygalactur 97.0 0.067 1.4E-06 56.1 18.8 111 147-287 179-301 (443)
29 PLN02188 polygalacturonase/gly 96.9 0.055 1.2E-06 56.1 17.0 158 124-312 123-312 (404)
30 PLN02682 pectinesterase family 96.6 0.035 7.6E-07 56.9 13.1 118 98-233 84-228 (369)
31 smart00656 Amb_all Amb_all dom 96.4 0.14 3.1E-06 47.5 15.1 137 129-287 45-189 (190)
32 PLN02197 pectinesterase 96.3 0.07 1.5E-06 57.8 13.9 151 51-232 243-423 (588)
33 COG5434 PGU1 Endopygalactoruna 96.3 0.049 1.1E-06 58.3 12.3 118 129-272 247-375 (542)
34 COG3420 NosD Nitrous oxidase a 96.2 0.24 5.3E-06 50.2 15.8 95 123-233 98-192 (408)
35 PLN02176 putative pectinestera 96.1 0.11 2.5E-06 52.6 13.4 119 98-233 53-188 (340)
36 PF12708 Pectate_lyase_3: Pect 96.1 0.03 6.6E-07 51.2 8.5 122 129-266 97-221 (225)
37 PF07602 DUF1565: Protein of u 96.0 0.33 7.3E-06 47.2 15.5 185 98-308 17-240 (246)
38 PLN02665 pectinesterase family 95.9 0.61 1.3E-05 47.9 17.8 117 98-232 82-218 (366)
39 COG3420 NosD Nitrous oxidase a 95.6 0.26 5.6E-06 50.0 13.4 135 122-276 44-197 (408)
40 PLN02432 putative pectinestera 95.6 0.18 3.9E-06 50.2 12.4 111 98-233 25-153 (293)
41 PLN02634 probable pectinestera 95.2 0.38 8.1E-06 49.3 13.2 118 98-233 70-214 (359)
42 PLN02416 probable pectinestera 95.2 0.21 4.6E-06 53.7 11.9 112 98-232 244-376 (541)
43 PLN02773 pectinesterase 95.0 1.7 3.7E-05 43.8 17.1 112 98-232 19-161 (317)
44 PLN03043 Probable pectinestera 95.0 1.9 4.2E-05 46.4 18.5 167 98-286 237-461 (538)
45 PLN02304 probable pectinestera 94.9 0.48 1E-05 48.8 13.0 119 98-233 89-227 (379)
46 PLN02301 pectinesterase/pectin 94.9 2.1 4.6E-05 46.3 18.4 116 98-232 250-402 (548)
47 PLN02201 probable pectinestera 94.7 0.34 7.4E-06 51.9 12.0 113 98-232 220-352 (520)
48 PLN02217 probable pectinestera 94.7 1.9 4.2E-05 47.6 18.0 167 98-286 264-485 (670)
49 PLN02488 probable pectinestera 94.7 0.38 8.2E-06 51.3 12.0 100 98-216 211-330 (509)
50 PLN02671 pectinesterase 94.6 0.52 1.1E-05 48.3 12.6 116 98-233 73-218 (359)
51 PLN02506 putative pectinestera 94.5 0.42 9.1E-06 51.4 12.0 113 98-232 246-378 (537)
52 PLN02170 probable pectinestera 94.4 0.49 1.1E-05 50.8 12.2 113 98-232 239-372 (529)
53 PLN02745 Putative pectinestera 94.3 0.51 1.1E-05 51.4 12.3 112 98-232 299-431 (596)
54 PF01095 Pectinesterase: Pecti 94.3 0.45 9.8E-06 47.4 11.1 114 98-233 14-147 (298)
55 PLN02713 Probable pectinestera 94.2 2.9 6.3E-05 45.4 17.6 104 109-232 282-419 (566)
56 PLN02990 Probable pectinestera 94.1 0.6 1.3E-05 50.6 12.4 100 98-216 273-393 (572)
57 PLN02933 Probable pectinestera 94.1 0.6 1.3E-05 50.1 12.2 112 98-232 232-364 (530)
58 PLN02708 Probable pectinestera 94.0 0.58 1.3E-05 50.5 12.0 100 98-216 255-376 (553)
59 PLN02484 probable pectinestera 93.9 0.58 1.3E-05 50.9 11.8 100 98-216 286-406 (587)
60 PLN02916 pectinesterase family 93.9 0.67 1.5E-05 49.4 12.0 113 98-232 201-336 (502)
61 PLN02995 Probable pectinestera 93.7 0.86 1.9E-05 49.1 12.6 113 98-232 237-371 (539)
62 PLN02314 pectinesterase 93.6 0.65 1.4E-05 50.5 11.5 99 98-216 292-411 (586)
63 PLN02313 Pectinesterase/pectin 93.6 0.68 1.5E-05 50.4 11.6 116 98-232 289-441 (587)
64 PLN02468 putative pectinestera 93.4 0.77 1.7E-05 49.8 11.6 99 98-216 272-391 (565)
65 PLN02497 probable pectinestera 93.4 1.4 3E-05 44.8 12.7 120 98-233 46-182 (331)
66 PF00544 Pec_lyase_C: Pectate 93.3 0.79 1.7E-05 42.9 10.2 116 146-284 76-200 (200)
67 PF14592 Chondroitinas_B: Chon 92.3 0.53 1.1E-05 49.2 8.1 103 198-311 199-323 (425)
68 PRK10531 acyl-CoA thioesterase 91.9 3.9 8.4E-05 42.9 14.0 69 152-233 204-282 (422)
69 COG5434 PGU1 Endopygalactoruna 87.1 3.7 7.9E-05 44.4 9.7 136 106-265 236-398 (542)
70 COG3866 PelB Pectate lyase [Ca 87.0 4.1 9E-05 41.0 9.3 121 188-311 115-252 (345)
71 PF08480 Disaggr_assoc: Disagg 86.6 4.3 9.3E-05 38.1 8.6 88 222-311 2-110 (198)
72 PF12541 DUF3737: Protein of u 81.9 7.7 0.00017 38.3 8.5 92 152-273 17-118 (277)
73 PF07602 DUF1565: Protein of u 76.8 23 0.0005 34.6 10.0 91 125-238 93-192 (246)
74 PF08480 Disaggr_assoc: Disagg 67.2 1E+02 0.0023 29.1 11.5 72 196-268 32-112 (198)
75 TIGR03804 para_beta_helix para 66.2 13 0.00028 25.8 4.3 40 191-232 1-40 (44)
76 PRK10123 wcaM putative colanic 48.9 34 0.00073 34.6 5.3 48 151-209 265-312 (464)
77 PF03211 Pectate_lyase: Pectat 48.8 52 0.0011 31.6 6.4 44 188-232 95-139 (215)
78 TIGR03804 para_beta_helix para 48.5 38 0.00083 23.3 4.2 42 147-210 1-42 (44)
79 PF07822 Toxin_13: Neurotoxin 48.4 6.6 0.00014 28.8 0.2 20 45-64 20-39 (55)
80 PF12541 DUF3737: Protein of u 47.0 1.7E+02 0.0037 29.1 9.7 31 253-287 195-225 (277)
81 PF03718 Glyco_hydro_49: Glyco 42.2 75 0.0016 34.6 7.0 84 186-275 370-456 (582)
82 PF06355 Aegerolysin: Aegeroly 28.3 3.7E+02 0.0081 23.7 8.1 71 153-229 14-88 (131)
83 PLN02698 Probable pectinestera 23.8 1.7E+02 0.0036 31.6 6.0 48 152-216 268-316 (497)
84 smart00710 PbH1 Parallel beta- 23.7 1.1E+02 0.0023 17.5 2.8 15 198-212 2-16 (26)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-61 Score=461.77 Aligned_cols=276 Identities=31% Similarity=0.423 Sum_probs=220.4
Q ss_pred CCCCCCCCCcEEEeCCCCCCCCCCCchhhhhhhhcCCCeEEEEeeceEEEec------ceEEecCCceEEeeCceeEEcC
Q 047672 71 KGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLK------NELIMNSFKTIDGRGAKVEIAN 144 (389)
Q Consensus 71 ~~ttGG~gG~vv~VT~~~d~~~~~~pGtLr~a~~~~~p~~Ivf~~~~~I~l~------~~L~I~snkTI~G~ga~~~i~g 144 (389)
.+||||.+|.+++|++.+| |...+...+|.++++-..|+|++. .+|.+.|||||.|.|+++++.|
T Consensus 46 ~GTtGG~~g~~v~v~ta~~---------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g 116 (345)
T COG3866 46 TGTTGGSGGDIVTVRTAND---------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVG 116 (345)
T ss_pred CCcccCCCCcEEEEeeHHH---------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEe
Confidence 3899999999999999999 888899999984444445678876 5677889999999999999987
Q ss_pred CceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEe-eCCceEEEeeeeeec--------CCCCee
Q 047672 145 GPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDI-FASSYVWVDHCYLAR--------AADGLI 215 (389)
Q Consensus 145 G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i-~~s~nVWIDHcs~s~--------~~Dgli 215 (389)
| ||.|+.+.|||||||+|++...+ ....|+|+| .+++|||||||+|+. ..||++
T Consensus 117 ~-gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~ 179 (345)
T COG3866 117 G-GLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV 179 (345)
T ss_pred c-eEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence 4 99999999999999999986421 123699999 679999999999999 799999
Q ss_pred EEeecCeeEEEeCcEecccceeEEeCCCCcc-cCCCceEEEEeceEEcCCCCCcCCccccceEEEecceeeCCcceEEee
Q 047672 216 DVIHASTAVTISNNCFEQHDKVMLLGHNDQF-TADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGG 294 (389)
Q Consensus 216 Di~~~s~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VT~hhN~fg~~~~~R~Pr~R~G~~Hv~NN~y~n~~~yai~~ 294 (389)
|+++++++||||||+|++|+|.+|+|.+|+. .+|++.+|||||||| +|+.||+||+|||.+|||||||+....|++..
T Consensus 180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~ 258 (345)
T COG3866 180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI 258 (345)
T ss_pred EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence 9999999999999999999999999999984 456789999999999 99999999999999999999999766565555
Q ss_pred CCC--ceEEeeccEEEcCCCCCCcceeeeccCCCCCcceEEecCCeecCceee--ccCCCCCCCCCCCCCcceeccCCCC
Q 047672 295 SAN--PTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYF--VPSGYGSCAPNYSRAQSFVVAPGAM 370 (389)
Q Consensus 295 ~~~--~~i~~egN~F~~~~~~~~k~vt~~~~~~~~~~w~~~s~~d~~~nGa~~--~~sG~~~~~~~y~~~~~~~~~~a~~ 370 (389)
+++ ++|++|+|||++...+..- .+.....+. |..+-+.++++.-. +..+...+.| +..|+|+++|.+.
T Consensus 259 ~iG~~AkiyvE~NyF~~~~~~~~f----~dt~~~~GY--~~~d~gsy~~~s~~~~~~~~G~~w~p--s~~Y~Ytvd~~~d 330 (345)
T COG3866 259 TIGTSAKIYVENNYFENGSEGLGF----LDTKGTSGY--ANQDSGSYLNSSKSMSVRAGGVTWNP--SSYYSYTVDPPED 330 (345)
T ss_pred eeccceEEEEecceeccCCCCcee----eecCCccce--EEeccCceecccCCcccccCCccCCC--CCCcccccCChHH
Confidence 555 9999999999997543211 122221133 33344444443221 2211122444 5667899999999
Q ss_pred hhh-hhcccCcC
Q 047672 371 VPA-LTANAGPL 381 (389)
Q Consensus 371 v~~-~~~~AG~~ 381 (389)
|++ |+.+||+-
T Consensus 331 Vks~Vt~yAGaG 342 (345)
T COG3866 331 VKSFVTNYAGAG 342 (345)
T ss_pred hhhhhhccccce
Confidence 998 78999963
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=1.9e-53 Score=395.98 Aligned_cols=191 Identities=43% Similarity=0.691 Sum_probs=161.5
Q ss_pred CCeEEEEeeceEEEecceEEecCCceEEeeCceeEEcCCceEEEe-ccccEEEEccEEEeccCCCCCceecCCCCCCCCC
Q 047672 107 KPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQ-GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRG 185 (389)
Q Consensus 107 ~p~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~~i~gG~gi~i~-~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~ 185 (389)
+|++|.+ +|+|+++.+|.|+|||||+|+|+++.|.+ +|+.+. +++|||||||+|+++. ++..++..+...
T Consensus 1 ~~~ii~~--~g~i~~~~~i~v~snkTi~G~g~~~~i~~-~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~ 71 (200)
T PF00544_consen 1 EPLIIKV--SGTIDLKSPISVGSNKTIIGIGAGATIIG-GGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGD 71 (200)
T ss_dssp S-EEEEE--HHCCHHHCEEEEESSEEEEEETTTTEEES-SEEEEEESCEEEEEES-EEECEE------EECSTEEETTEE
T ss_pred CcEEEEE--EeEEccCCeEEECCCcEEEEccCCeEEEC-ceEEEecCCCeEEEECCEEEecc------ccCCcccCCCcc
Confidence 4666665 55889999999999999999999999987 589997 9999999999999841 122222223345
Q ss_pred CCCCCeEEeeCCceEEEeeeeeecC--------CCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEe
Q 047672 186 GSDGDAIDIFASSYVWVDHCYLARA--------ADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIA 257 (389)
Q Consensus 186 ~~~gDaI~i~~s~nVWIDHcs~s~~--------~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~h 257 (389)
..++|+|+|++++|||||||+|+|. .||++|++.++++||||||+|++|+|+||+|++|....+..++||||
T Consensus 72 ~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~h 151 (200)
T PF00544_consen 72 SSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFH 151 (200)
T ss_dssp ECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEE
T ss_pred ccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEE
Confidence 6789999999999999999999999 99999999999999999999999999999999988776767999999
Q ss_pred ceEEcCCCCCcCCccccceEEEecceeeCCcceEEeeCCCceEEeeccEE
Q 047672 258 FNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYF 307 (389)
Q Consensus 258 hN~fg~~~~~R~Pr~R~G~~Hv~NN~y~n~~~yai~~~~~~~i~~egN~F 307 (389)
|||| +++.+|+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 152 hN~f-~~~~~R~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 152 HNYF-ANTNSRNPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp S-EE-EEEEE-TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred eEEE-CchhhCCCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 9999 999999999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=5.6e-50 Score=370.07 Aligned_cols=171 Identities=59% Similarity=0.853 Sum_probs=160.0
Q ss_pred ceEEecCCceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEE
Q 047672 123 NELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWV 202 (389)
Q Consensus 123 ~~L~I~snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWI 202 (389)
.+|.|+|||||+|+|+++.|.| .+|+++.++|||||||+|+++.+. ..+++|+|++++++||||
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g-~gl~i~~~~NVIirnl~i~~~~~~---------------~~~~~D~i~~~~~~~VwI 73 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKG-GGLTIKSVSNVIIRNLTIHDPKPV---------------YGSDGDAISIDGSSNVWI 73 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEe-eEEEEEecceEEEeCCEEECCccC---------------CCCCCCEEEEeCCCeEEE
Confidence 5799999999999999999986 599999999999999999986532 136899999999999999
Q ss_pred eeeeeecC---------CCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccc
Q 047672 203 DHCYLARA---------ADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVR 273 (389)
Q Consensus 203 DHcs~s~~---------~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R 273 (389)
|||+|+|. .|+++|++.++++||||||+|++|+|++|+|++|++..+..++|||||||| .++.+|+||+|
T Consensus 74 DHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~~R~P~~r 152 (190)
T smart00656 74 DHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLRQRAPRVR 152 (190)
T ss_pred EccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEE-cCcccCCCccc
Confidence 99999998 899999999999999999999999999999999988766689999999999 99999999999
Q ss_pred cceEEEecceeeCCcceEEeeCCCceEEeeccEEEcC
Q 047672 274 IGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMAS 310 (389)
Q Consensus 274 ~G~~Hv~NN~y~n~~~yai~~~~~~~i~~egN~F~~~ 310 (389)
+|++|+|||||++|..|+++.++++++++|+|||++.
T Consensus 153 ~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 153 FGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 9999999999999998999999999999999999975
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.84 E-value=2.4e-07 Score=92.29 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=98.3
Q ss_pred hhhhhcCCCe-EEEEeeceEEEecceEEec-CCceEEeeCce-eEEcC------CceEEEeccccEEEEccEEEeccCCC
Q 047672 100 RYGVIQTKPL-WIIFAKDMVIRLKNELIMN-SFKTIDGRGAK-VEIAN------GPCITIQGVSHVIIHGISIHDCKPGK 170 (389)
Q Consensus 100 r~a~~~~~p~-~Ivf~~~~~I~l~~~L~I~-snkTI~G~ga~-~~i~g------G~gi~i~~a~NVIIrnL~i~~~~~~~ 170 (389)
++|+.+-.|- +|++. .|+-+++..|.|. +++||.|.|.. +.|.+ +-+|.+ .++||.|++|+|++.. .
T Consensus 2 Q~Ai~~A~~GDtI~l~-~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~--~ 77 (314)
T TIGR03805 2 QEALIAAQPGDTIVLP-EGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTK--G 77 (314)
T ss_pred HhHHhhCCCCCEEEEC-CCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCC--C
Confidence 3444443333 44444 3455555666666 67777776643 22211 223433 4566666666665431 1
Q ss_pred CCc-eecCCCC--------CC--CCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEE
Q 047672 171 SGQ-VRSSPDH--------VG--RRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVML 239 (389)
Q Consensus 171 ~g~-v~~~~~~--------~g--~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~L 239 (389)
.|. ++.+..- .. ......++||.+..++++-|.+|.++...|--|-+.. |++++|++|.+++-..+..
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEE
Confidence 111 0000000 00 0011345677777777777777777776663334443 6777777777765333333
Q ss_pred eCCCCcccCCCceEEEEeceEEcCCCCCcC-----Ccc--cc-ceEEEecceeeCCc----------------ceEEeeC
Q 047672 240 LGHNDQFTADKIMKVTIAFNHFGPGLIERM-----PRV--RI-GYAHVANNRYEDWK----------------MYAIGGS 295 (389)
Q Consensus 240 iG~sd~~~~d~~~~VT~hhN~fg~~~~~R~-----Pr~--R~-G~~Hv~NN~y~n~~----------------~yai~~~ 295 (389)
+-.+. ++.+.+|.+ .++..=. |.. .+ ..+.|.||.+.+.. ..+|-..
T Consensus 157 i~~S~--------~~~v~~N~~-~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~ 227 (314)
T TIGR03805 157 IENSQ--------NADVYNNIA-TNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM 227 (314)
T ss_pred EEecC--------CcEEECCEE-eccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence 32222 355556666 4432111 111 11 24666666665421 1122223
Q ss_pred CCceEEeeccEEEcCCC
Q 047672 296 ANPTIFSEGNYFMASND 312 (389)
Q Consensus 296 ~~~~i~~egN~F~~~~~ 312 (389)
....+.+++|.|.....
T Consensus 228 ~~~~v~I~~N~i~~n~~ 244 (314)
T TIGR03805 228 ANRDVEIFGNVISNNDT 244 (314)
T ss_pred cccceEEECCEEeCCcc
Confidence 33577888888877654
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.38 E-value=6.4e-06 Score=84.89 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=84.6
Q ss_pred hhhhhhcCCCe-EEEEeeceEEEecceEEec------CCceEEee-CceeEEcCCceEEEeccccEEEEccEEEeccCCC
Q 047672 99 LRYGVIQTKPL-WIIFAKDMVIRLKNELIMN------SFKTIDGR-GAKVEIANGPCITIQGVSHVIIHGISIHDCKPGK 170 (389)
Q Consensus 99 Lr~a~~~~~p~-~Ivf~~~~~I~l~~~L~I~------snkTI~G~-ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~ 170 (389)
|..|+.+-.|= +|++. +|+-+ ..+|.+. ..+||..+ ..++.|.|.-+|+|. .+.++|.+|.|++..+..
T Consensus 7 lq~Ai~~a~pGD~I~L~-~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~~~ 83 (425)
T PF14592_consen 7 LQSAIDNAKPGDTIVLA-DGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYTPT 83 (425)
T ss_dssp HHHHHHH--TT-EEEE--SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---T
T ss_pred HHHHHHhCCCCCEEEEC-Cceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCCCC
Confidence 88888764442 33332 44444 2345543 46888886 446777765678884 699999999999865321
Q ss_pred CCce--ecCCC-----C----------CCCCCCCCCCeEEe----eCCceEEEeeeeeecC--CCCeeEEe-------ec
Q 047672 171 SGQV--RSSPD-----H----------VGRRGGSDGDAIDI----FASSYVWVDHCYLARA--ADGLIDVI-------HA 220 (389)
Q Consensus 171 ~g~v--~~~~~-----~----------~g~~~~~~gDaI~i----~~s~nVWIDHcs~s~~--~DgliDi~-------~~ 220 (389)
...+ +.... | |.. ...+.+...+ -.++|--||||+|..- ..-+|-+. ..
T Consensus 84 ~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~ 162 (425)
T PF14592_consen 84 GAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSI 162 (425)
T ss_dssp TT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS---
T ss_pred CceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCcccc
Confidence 1111 00000 0 100 0111122223 1245555899999972 22223322 22
Q ss_pred CeeEEEeCcEecc-------cceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccc--cceEEEecceeeCCcceE
Q 047672 221 STAVTISNNCFEQ-------HDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVR--IGYAHVANNRYEDWKMYA 291 (389)
Q Consensus 221 s~~VTISnn~f~~-------H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R--~G~~Hv~NN~y~n~~~ya 291 (389)
..+-+|.+|||.+ ...++-||.|.....+ -+.++.+|+| ++|.+-.--+. -+.--+.||.|++-. -.
T Consensus 163 ~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~es~-G~ 238 (425)
T PF14592_consen 163 ANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRESQ-GS 238 (425)
T ss_dssp ----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES-S-SE
T ss_pred ccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchh-hhcCCceeEEEeecCCceEeccEEEecc-ce
Confidence 4577899999995 3566777877543222 3678899999 88876643332 244445555555432 13
Q ss_pred EeeCCCceEEeeccEEEc
Q 047672 292 IGGSANPTIFSEGNYFMA 309 (389)
Q Consensus 292 i~~~~~~~i~~egN~F~~ 309 (389)
+-.+-|-.-.+++|+|..
T Consensus 239 ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 239 LTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp EEEEE-SS-EEES-EEEE
T ss_pred EEEecCCCceEeccEEec
Confidence 333333334444444443
No 6
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.21 E-value=2e-05 Score=67.78 Aligned_cols=133 Identities=22% Similarity=0.262 Sum_probs=87.9
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
||.+....++.|++.+|++. .+++|.+.+...+.|+.|+|.+...|+ .+.. ..+++|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---------------------~~~gi~~~~~~~~~i~n~~i~~~~~gi-~~~~-~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---------------------GGDGIHVSGSSNITIENCTISNGGYGI-YVSG-GSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---------------------SSECEEE-SSCESEEES-EEESSTTSE-EEEC-CES-EE
T ss_pred EEEEECCcCeEEeeeEEEeC---------------------CCeEEEEEcCCCeEEECeEEECCCcEE-EEec-CCCeEE
Confidence 58888899999999999963 479999999999999999999955555 6665 589999
Q ss_pred eCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccc--cceEEEecceeeCCcceEEeeCC--CceEEe
Q 047672 227 SNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVR--IGYAHVANNRYEDWKMYAIGGSA--NPTIFS 302 (389)
Q Consensus 227 Snn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R--~G~~Hv~NN~y~n~~~yai~~~~--~~~i~~ 302 (389)
++|.|.+......+-.+. .+++.+|.| .++..-.=.++ ...+.+.||.+.+.+.+++.... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i-~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRI-ENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EE-ECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEE-EcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999877443333222 588999999 77644333232 23688899999887656554443 458899
Q ss_pred eccEEEcCC
Q 047672 303 EGNYFMASN 311 (389)
Q Consensus 303 egN~F~~~~ 311 (389)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998765
No 7
>PLN02218 polygalacturonase ADPG
Probab=98.16 E-value=6.5e-05 Score=78.14 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=86.1
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
.+.+..++||+|+||+|... . .....|||.+..++||.|.+|.++.. |..|.++.++++|+|
T Consensus 217 ~i~~~~~~nV~i~~v~I~a~--~---------------~spNTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I 278 (431)
T PLN02218 217 QISIEKCSNVQVSNVVVTAP--A---------------DSPNTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQI 278 (431)
T ss_pred EEEEEceeeEEEEEEEEeCC--C---------------CCCCCCcEeecccceEEEEccEEecC-CceEEecCCCceEEE
Confidence 45556889999999999742 1 12478999999999999999999877 667799999999999
Q ss_pred eCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCCCCCcCCccc---cceEEEecceeeCCcc
Q 047672 227 SNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPGLIERMPRVR---IGYAHVANNRYEDWKM 289 (389)
Q Consensus 227 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~~~~R~Pr~R---~G~~Hv~NN~y~n~~~ 289 (389)
++|.+.. ..+.-+|+--.+. .+..-+|++.++.| .+. .+.=|++ .|...+-|=.|+|..+
T Consensus 279 ~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m 342 (431)
T PLN02218 279 NDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SGT-DNGVRIKTYQGGSGTASNIIFQNIQM 342 (431)
T ss_pred EeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ecC-CcceEEeecCCCCeEEEEEEEEeEEE
Confidence 9999963 3346688754332 22345899999998 665 2344443 2334455555555543
No 8
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.07 E-value=0.00029 Score=73.12 Aligned_cols=183 Identities=18% Similarity=0.222 Sum_probs=110.9
Q ss_pred hhhhhhcC--CCeEEEEeeceEEEecceEEecCCceEEeeCcee--EEcCCceEE-EeccccEEEEccEEEeccCCCCCc
Q 047672 99 LRYGVIQT--KPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKV--EIANGPCIT-IQGVSHVIIHGISIHDCKPGKSGQ 173 (389)
Q Consensus 99 Lr~a~~~~--~p~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~--~i~gG~gi~-i~~a~NVIIrnL~i~~~~~~~~g~ 173 (389)
|+.|+.+- .--.|++... + .+..+|.+.+++||.|+.... .|.++.++. -..++||-|++|+|++. |
T Consensus 57 LQaAIdaAa~gG~tV~Lp~G-~-Y~~G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGs-----G- 128 (455)
T TIGR03808 57 LQRAIDEAARAQTPLALPPG-V-YRTGPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDGG-----G- 128 (455)
T ss_pred HHHHHHHhhcCCCEEEECCC-c-eecccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEeC-----C-
Confidence 77776541 1234555542 2 234789999999999985432 244443444 34899999999999863 1
Q ss_pred eecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCC-CCeeEEeecCeeEEEeCcEeccc--ceeEEeCCCCcccCCC
Q 047672 174 VRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAA-DGLIDVIHASTAVTISNNCFEQH--DKVMLLGHNDQFTADK 250 (389)
Q Consensus 174 v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~-DgliDi~~~s~~VTISnn~f~~H--~k~~LiG~sd~~~~d~ 250 (389)
.+..+..-+|.+.+++++-|.+|+|.... .|. .+.. +. ..|++|.+... ....||.+.+
T Consensus 129 ---------~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI-~L~~-~~-~~I~~N~I~g~~~~~I~lw~S~g------ 190 (455)
T TIGR03808 129 ---------IPLPQRRGLIHCQGGRDVRITDCEITGSGGNGI-WLET-VS-GDISGNTITQIAVTAIVSFDALG------ 190 (455)
T ss_pred ---------CcccCCCCEEEEccCCceEEEeeEEEcCCcceE-EEEc-Cc-ceEecceEeccccceEEEeccCC------
Confidence 12334566899999999999999999984 776 5554 44 66677766642 1244554443
Q ss_pred ceEEEEeceEEcCCCCC------cC--------------------Ccc-----------ccceEEEecceeeCCcceEEe
Q 047672 251 IMKVTIAFNHFGPGLIE------RM--------------------PRV-----------RIGYAHVANNRYEDWKMYAIG 293 (389)
Q Consensus 251 ~~~VT~hhN~fg~~~~~------R~--------------------Pr~-----------R~G~~Hv~NN~y~n~~~yai~ 293 (389)
+.+.+|.. .++.. |+ |.- |-+.+.|.+|.+.+-..-+|-
T Consensus 191 ---~~V~~N~I-~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~ 266 (455)
T TIGR03808 191 ---LIVARNTI-IGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVR 266 (455)
T ss_pred ---CEEECCEE-EccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEE
Confidence 33344444 33322 21 000 112455666666665434666
Q ss_pred eCCCceEEeeccEEEcCC
Q 047672 294 GSANPTIFSEGNYFMASN 311 (389)
Q Consensus 294 ~~~~~~i~~egN~F~~~~ 311 (389)
......+.+.+|.|....
T Consensus 267 ~nsss~~~i~~N~~~~~R 284 (455)
T TIGR03808 267 GNSASNIQITGNSVSDVR 284 (455)
T ss_pred EEcccCcEEECcEeeeee
Confidence 666666777777777543
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.02 E-value=8.4e-05 Score=77.69 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=63.0
Q ss_pred CCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCC
Q 047672 186 GSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPG 264 (389)
Q Consensus 186 ~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~ 264 (389)
....|||.+..++||+|.+|.++.. |..|.++.++++|+|+++.+.. ..+.-+|+--++. .+...+|++.++.| .+
T Consensus 185 spNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~-~~ 261 (456)
T PLN03003 185 SPNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNF-RG 261 (456)
T ss_pred CCCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEE-EC
Confidence 3578999999999999999999876 5556999999999999999864 2356677765433 23346899999999 76
Q ss_pred CCCcCCcc
Q 047672 265 LIERMPRV 272 (389)
Q Consensus 265 ~~~R~Pr~ 272 (389)
.. +.=|+
T Consensus 262 T~-nGvRI 268 (456)
T PLN03003 262 TM-NGARI 268 (456)
T ss_pred CC-cEEEE
Confidence 53 33455
No 10
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.01 E-value=0.00017 Score=74.46 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=74.9
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
.+.+..++||.|+||+|.... .....|||.+..++||+|.+|.+...-| .|.++.++++|+|
T Consensus 180 ~i~~~~~~~v~i~~v~I~~~~-----------------~spNtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I 241 (404)
T PLN02188 180 HIALVECRNFKGSGLKISAPS-----------------DSPNTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTI 241 (404)
T ss_pred EEEEEccccEEEEEEEEeCCC-----------------CCCCCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEE
Confidence 455567888888888887421 1246899999999999999999988766 6689989999999
Q ss_pred eCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCCC
Q 047672 227 SNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPGL 265 (389)
Q Consensus 227 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~~ 265 (389)
+|+.+.. ..++-+|+-..+. ......|++.++.| .+.
T Consensus 242 ~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~-~~t 279 (404)
T PLN02188 242 TRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTF-TGT 279 (404)
T ss_pred EEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEE-ECC
Confidence 9999863 3456678743322 22346799999999 665
No 11
>PLN02155 polygalacturonase
Probab=97.96 E-value=0.00019 Score=73.96 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCCC
Q 047672 187 SDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPGL 265 (389)
Q Consensus 187 ~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~~ 265 (389)
...|||.+..++||+|.+|.+...-| .|.++.++++|+|+++.+.. ..++-||+--.+. .....+|++.++.| .+.
T Consensus 193 ~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~t 269 (394)
T PLN02155 193 PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TGS 269 (394)
T ss_pred CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eCC
Confidence 56799999999999999999988766 56899899999999999974 3356788854332 23346899999999 665
Q ss_pred CCcCCcccc----ceEEEecceeeCCc
Q 047672 266 IERMPRVRI----GYAHVANNRYEDWK 288 (389)
Q Consensus 266 ~~R~Pr~R~----G~~Hv~NN~y~n~~ 288 (389)
. |.=|++- +...|-|=.|.|..
T Consensus 270 ~-~GirIKT~~~~~gG~v~nI~f~ni~ 295 (394)
T PLN02155 270 Q-NGVRIKSWARPSTGFVRNVFFQDLV 295 (394)
T ss_pred C-cEEEEEEecCCCCEEEEEEEEEeEE
Confidence 3 3344421 22344454555544
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.90 E-value=0.00065 Score=67.87 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=94.0
Q ss_pred CCceEEeeCceeEEcCCceEEEeccccEEEEccEEEecc-----CCCCCce-ecCCCC-C-CCC-CCCCCCeEEeeCCce
Q 047672 129 SFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCK-----PGKSGQV-RSSPDH-V-GRR-GGSDGDAIDIFASSY 199 (389)
Q Consensus 129 snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~-----~~~~g~v-~~~~~~-~-g~~-~~~~gDaI~i~~s~n 199 (389)
+++||.|..-. =.++.||.+++++|++||++++.... ....|.+ ..+.+- + +.. ....++||.+..+++
T Consensus 63 ~~VtI~~ltI~--~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~ 140 (314)
T TIGR03805 63 DDVTLSDLAVE--NTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQN 140 (314)
T ss_pred CCeEEEeeEEE--cCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCC
Confidence 55566554211 11224666667777777777765211 0011211 111100 0 000 012346899999999
Q ss_pred EEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcC----------
Q 047672 200 VWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERM---------- 269 (389)
Q Consensus 200 VWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~---------- 269 (389)
+.|.+|.+.....|+ -+.. |.++.|.+|.+.+-..+.++-..+....-...++.+++|.| .++....
T Consensus 141 ~~v~nN~~~~n~~GI-~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i-~~n~~~n~~~~gn~v~~ 217 (314)
T TIGR03805 141 IVVRNNVAEENVAGI-EIEN-SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNII-FDNNTPNFAPAGSIVAS 217 (314)
T ss_pred eEEECCEEccCcceE-EEEe-cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEE-ECCCCCCCcccCCceec
Confidence 999999999988886 4444 88999999999976666655322211111123799999999 7664432
Q ss_pred -Ccccc------ceEEEecceeeCCcceEEee
Q 047672 270 -PRVRI------GYAHVANNRYEDWKMYAIGG 294 (389)
Q Consensus 270 -Pr~R~------G~~Hv~NN~y~n~~~yai~~ 294 (389)
|.-+. -.+.++||.+++....++..
T Consensus 218 ~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~ 249 (314)
T TIGR03805 218 VPAGTGVVVMANRDVEIFGNVISNNDTANVLI 249 (314)
T ss_pred CCCCcEEEEEcccceEEECCEEeCCcceeEEE
Confidence 22111 14799999999877666543
No 13
>PLN02793 Probable polygalacturonase
Probab=97.90 E-value=0.00024 Score=74.20 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=75.7
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
.+.+..++||.|+||+|.... .....|||.+..++||+|.+|.+... |..|.++.++++|+|
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~-----------------~spNTDGIdi~~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I 263 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPA-----------------TSPNTDGIHISASRGVVIKDSIVRTG-DDCISIVGNSSRIKI 263 (443)
T ss_pred EEEEEccCcEEEEEEEEECCC-----------------CCCCCCcEeeeccceEEEEeCEEeCC-CCeEEecCCcCCEEE
Confidence 344557788888888887521 13578999999999999999999855 666689888999999
Q ss_pred eCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCCCCCcCCcc
Q 047672 227 SNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPGLIERMPRV 272 (389)
Q Consensus 227 Snn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~~~~R~Pr~ 272 (389)
+|+.+.. ..+.-||+--.+. ......|++.++.| .+.. +.=|+
T Consensus 264 ~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~-~~t~-~GirI 307 (443)
T PLN02793 264 RNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFL-SNTD-NGVRI 307 (443)
T ss_pred EEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEE-eCCC-ceEEE
Confidence 9999864 2345688753322 22346799999999 6653 44444
No 14
>PLN03010 polygalacturonase
Probab=97.85 E-value=0.00087 Score=69.38 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=66.3
Q ss_pred CCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCccc-CCCceEEEEeceEEcCCC
Q 047672 187 SDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFT-ADKIMKVTIAFNHFGPGL 265 (389)
Q Consensus 187 ~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~-~d~~~~VT~hhN~fg~~~ 265 (389)
...|||.+..++||+|.+|.+... |-.|.++.++++++|.++.... ..+.-||+--... .+....|++.++.| .+.
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i-~~t 281 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTF-NQT 281 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEE-eCC
Confidence 578999999999999999988877 6667999988888888777752 2245567654332 22346799999998 654
Q ss_pred CCcCCccc---cceEEEecceeeCCc
Q 047672 266 IERMPRVR---IGYAHVANNRYEDWK 288 (389)
Q Consensus 266 ~~R~Pr~R---~G~~Hv~NN~y~n~~ 288 (389)
.+.=|++ .|...|-|=.|+|..
T Consensus 282 -~~GirIKt~~G~~G~v~nItf~nI~ 306 (409)
T PLN03010 282 -TNGARIKTWQGGQGYARNISFENIT 306 (409)
T ss_pred -CcceEEEEecCCCEEEEEeEEEeEE
Confidence 2333442 233445555555543
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.72 E-value=0.00053 Score=68.66 Aligned_cols=123 Identities=22% Similarity=0.298 Sum_probs=84.6
Q ss_pred ceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEE
Q 047672 146 PCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVT 225 (389)
Q Consensus 146 ~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VT 225 (389)
+.+.+..++||.|+||+|+... .....|||.+.+++||.|++|.+... |-.|.++.++.+|+
T Consensus 116 w~~~~~~~~nv~i~~i~I~~~~-----------------~~~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~ 177 (326)
T PF00295_consen 116 WHIHINDCDNVTISNITINNPA-----------------NSPNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNIL 177 (326)
T ss_dssp ESEEEESEEEEEEESEEEEEGG-----------------GCTS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEE
T ss_pred eEEEEEccCCeEEcceEEEecC-----------------CCCCcceEEEEeeeEEEEEEeecccc-cCcccccccccceE
Confidence 5688889999999999999743 12468999999999999999999776 66668988888999
Q ss_pred EeCcEecccceeEEeCCCCcccC-CCceEEEEeceEEcCCCCCcCCccc---cceEEEecceeeCCcc
Q 047672 226 ISNNCFEQHDKVMLLGHNDQFTA-DKIMKVTIAFNHFGPGLIERMPRVR---IGYAHVANNRYEDWKM 289 (389)
Q Consensus 226 ISnn~f~~H~k~~LiG~sd~~~~-d~~~~VT~hhN~fg~~~~~R~Pr~R---~G~~Hv~NN~y~n~~~ 289 (389)
|+||.|.. ..++-+|+.-.... ..-.+|+|.++.| .+. .|.-|++ .+...|-|=.|++..+
T Consensus 178 v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~~t-~~gi~iKt~~~~~G~v~nI~f~ni~~ 242 (326)
T PF00295_consen 178 VENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-INT-DNGIRIKTWPGGGGYVSNITFENITM 242 (326)
T ss_dssp EESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-ESE-SEEEEEEEETTTSEEEEEEEEEEEEE
T ss_pred EEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-ecc-ceEEEEEEecccceEEeceEEEEEEe
Confidence 99999974 33466665332211 1124799999988 665 3554443 1233444444555443
No 16
>PLN02218 polygalacturonase ADPG
Probab=97.69 E-value=0.0025 Score=66.43 Aligned_cols=135 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeec-----CCCCeeEEeecC
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLAR-----AADGLIDVIHAS 221 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s 221 (389)
-|++.+++|+.|++|+|++.. .=.|.+..++||.|++.++.. -.||. |+.. +
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp---------------------~w~i~~~~~~nV~i~~v~I~a~~~spNTDGI-di~s-s 250 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQ---------------------QIQISIEKCSNVQVSNVVVTAPADSPNTDGI-HITN-T 250 (431)
T ss_pred EEEEEccccEEEeCeEEEcCC---------------------CEEEEEEceeeEEEEEEEEeCCCCCCCCCcE-eecc-c
Confidence 477889999999999999742 346788899999999999876 46886 8876 8
Q ss_pred eeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCC------CcCCcc-ccceEEEecceeeCCcceEEe-
Q 047672 222 TAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLI------ERMPRV-RIGYAHVANNRYEDWKMYAIG- 293 (389)
Q Consensus 222 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~------~R~Pr~-R~G~~Hv~NN~y~n~~~yai~- 293 (389)
++|+|++|.|..-+-..-+.+.. .+|++.++.++.+.. .+.+.- ..-.++|-|+.+.+.. +++.
T Consensus 251 ~nV~I~n~~I~tGDDcIaIksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRI 322 (431)
T PLN02218 251 QNIRVSNSIIGTGDDCISIESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRI 322 (431)
T ss_pred ceEEEEccEEecCCceEEecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEE
Confidence 99999999999887777776542 257887777743221 010100 0114667777766642 3331
Q ss_pred -eC-----CCceEEeeccEEEcCCC
Q 047672 294 -GS-----ANPTIFSEGNYFMASND 312 (389)
Q Consensus 294 -~~-----~~~~i~~egN~F~~~~~ 312 (389)
.. .-..|.+|+...++...
T Consensus 323 KT~~Gg~G~v~nI~f~ni~m~~V~~ 347 (431)
T PLN02218 323 KTYQGGSGTASNIIFQNIQMENVKN 347 (431)
T ss_pred eecCCCCeEEEEEEEEeEEEEcccc
Confidence 11 12366666666666543
No 17
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.57 E-value=0.00098 Score=57.20 Aligned_cols=130 Identities=20% Similarity=0.160 Sum_probs=79.4
Q ss_pred ceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEE
Q 047672 146 PCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVT 225 (389)
Q Consensus 146 ~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VT 225 (389)
.||.+...+++.|+|-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+. .+..++
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~~ 79 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNIT 79 (158)
T ss_dssp ECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-E
T ss_pred eEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCce
Confidence 46888888888888888884 357788888899999999999888 444555 578999
Q ss_pred EeCcEecccce-eEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCcccc-c--eEEEecceeeCCcceEEeeCCCce-E
Q 047672 226 ISNNCFEQHDK-VMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRI-G--YAHVANNRYEDWKMYAIGGSANPT-I 300 (389)
Q Consensus 226 ISnn~f~~H~k-~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~-G--~~Hv~NN~y~n~~~yai~~~~~~~-i 300 (389)
|++|.|.+... ++.+.. ....+++.+|.| .++.+..=.+.. . .+-+.+|.+++...+++....... +
T Consensus 80 i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~-~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~ 151 (158)
T PF13229_consen 80 IENNRIENNGDYGIYISN-------SSSNVTIENNTI-HNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNC 151 (158)
T ss_dssp EES-EEECSSS-SCE-TC-------EECS-EEES-EE-ECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--
T ss_pred ecCcEEEcCCCccEEEec-------cCCCEEEEeEEE-EeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeE
Confidence 99999987544 444432 012488899999 666422222222 2 466688888887778887666555 8
Q ss_pred EeeccEE
Q 047672 301 FSEGNYF 307 (389)
Q Consensus 301 ~~egN~F 307 (389)
.+.+|.|
T Consensus 152 ~v~~n~~ 158 (158)
T PF13229_consen 152 TVTNNTF 158 (158)
T ss_dssp EEES-E-
T ss_pred EEECCCC
Confidence 8888887
No 18
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.49 E-value=0.0096 Score=61.05 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=127.5
Q ss_pred hhhhhhcCCCeEEEEeeceEEEecceEEecCCceEEeeCceeEEcC--CceEEEe---------ccccEEEEccEEEecc
Q 047672 99 LRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIAN--GPCITIQ---------GVSHVIIHGISIHDCK 167 (389)
Q Consensus 99 Lr~a~~~~~p~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~~i~g--G~gi~i~---------~a~NVIIrnL~i~~~~ 167 (389)
|.+++.+-. .|..+-+-+-.+.++|.|++.-+|+|+||.+.|.+ +.+|++. +-.+|.+.|++|...
T Consensus 57 le~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~- 133 (386)
T PF01696_consen 57 LEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR- 133 (386)
T ss_pred HHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC-
Confidence 777776543 34555554566778999999999999999987743 4456653 557899999999842
Q ss_pred CCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCccc
Q 047672 168 PGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFT 247 (389)
Q Consensus 168 ~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~ 247 (389)
..--++-+...+++.|.-|.|....-=.|+... ...|..|+|..-+|+... .+
T Consensus 134 -------------------~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~-~~---- 186 (386)
T PF01696_consen 134 -------------------DTFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS-RG---- 186 (386)
T ss_pred -------------------CccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec-CC----
Confidence 134677788899999999999998877777765 668999999887777633 21
Q ss_pred CCCceEEEEeceEEcCCCCCcCCccccceEEEecceeeCCcceEEeeCCCceEEeeccEEEcCCC
Q 047672 248 ADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASND 312 (389)
Q Consensus 248 ~d~~~~VT~hhN~fg~~~~~R~Pr~R~G~~Hv~NN~y~n~~~yai~~~~~~~i~~egN~F~~~~~ 312 (389)
+.++++.++.| +.+ ..=-+-.|.+++-+|.+.+-.-..+-. .+..+.+|.|..+.+
T Consensus 187 ---~~~lsVk~C~F-ekC--~igi~s~G~~~i~hn~~~ec~Cf~l~~---g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 ---KSKLSVKKCVF-EKC--VIGIVSEGPARIRHNCASECGCFVLMK---GTGSIKHNMVCGPND 242 (386)
T ss_pred ---cceEEeeheee-ehe--EEEEEecCCeEEecceecccceEEEEc---ccEEEeccEEeCCCC
Confidence 24688899999 665 222234578999999998865333333 345688999997765
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.48 E-value=0.0037 Score=65.09 Aligned_cols=164 Identities=20% Similarity=0.192 Sum_probs=96.9
Q ss_pred CceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCc-eecCCCCC-CCC-CCCCCCeEEeeCCceEEEeeee
Q 047672 130 FKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQ-VRSSPDHV-GRR-GGSDGDAIDIFASSYVWVDHCY 206 (389)
Q Consensus 130 nkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~-v~~~~~~~-g~~-~~~~gDaI~i~~s~nVWIDHcs 206 (389)
.+||+|.|.+-.-.. .+|.+++++++.|++.+|++.- .-|. +....... +.+ ......+|.+..++++.|.+++
T Consensus 121 GLtIdGsG~dl~~rd-AgI~v~~a~~v~Iedn~L~gsg--~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~ 197 (455)
T TIGR03808 121 GLTLDGGGIPLPQRR-GLIHCQGGRDVRITDCEITGSG--GNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNT 197 (455)
T ss_pred eeEEEeCCCcccCCC-CEEEEccCCceEEEeeEEEcCC--cceEEEEcCcceEecceEeccccceEEEeccCCCEEECCE
Confidence 346677665433223 4788899999999999999751 0122 11110000 000 0112344888899999999999
Q ss_pred eecCCCCeeEEeec-----------------------------------CeeEEEeCcEecccceeEEeCCCCcccCCCc
Q 047672 207 LARAADGLIDVIHA-----------------------------------STAVTISNNCFEQHDKVMLLGHNDQFTADKI 251 (389)
Q Consensus 207 ~s~~~DgliDi~~~-----------------------------------s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~ 251 (389)
++.+.|+.|-+.+- +.+++|+.|.++++.+--+.+.+.+
T Consensus 198 I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss------ 271 (455)
T TIGR03808 198 IIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSAS------ 271 (455)
T ss_pred EEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEccc------
Confidence 99999976655432 4577778887777763333333221
Q ss_pred eEEEEeceEEcCCCCCcCCcccc-c-------e-EEEecceeeCC-cceEEe-eCCCceE-EeeccEEEcCC
Q 047672 252 MKVTIAFNHFGPGLIERMPRVRI-G-------Y-AHVANNRYEDW-KMYAIG-GSANPTI-FSEGNYFMASN 311 (389)
Q Consensus 252 ~~VT~hhN~fg~~~~~R~Pr~R~-G-------~-~Hv~NN~y~n~-~~yai~-~~~~~~i-~~egN~F~~~~ 311 (389)
++.+..|.| -++|| | . .-+.||.++.. ..|++- ...+..+ .++||...+-.
T Consensus 272 -~~~i~~N~~--------~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~ 334 (455)
T TIGR03808 272 -NIQITGNSV--------SDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLI 334 (455)
T ss_pred -CcEEECcEe--------eeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccc
Confidence 345555555 25555 3 1 33667777753 356653 4444444 67888887643
No 20
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.41 E-value=0.012 Score=53.88 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=97.7
Q ss_pred hhhhh--h-cCCCeEEEEeeceEEEecceEEecCCceEEeeCcee-EEc--C-Cc------eE-EEec-ccc--EEEEcc
Q 047672 99 LRYGV--I-QTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKV-EIA--N-GP------CI-TIQG-VSH--VIIHGI 161 (389)
Q Consensus 99 Lr~a~--~-~~~p~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~-~i~--g-G~------gi-~i~~-a~N--VIIrnL 161 (389)
|+.|+ . ..+..+|.|- .|+-.++.+|.+.++++|.|.|... .+. + .. +. .+.. ..+ +-|+||
T Consensus 21 iq~Ai~~~~~~~g~~v~~P-~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 21 IQAAIDAAAAAGGGVVYFP-PGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHCSTTSEEEEE--SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHhhhhcccCCCeEEEEc-CcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 77777 2 2455666665 5688888999999999999987632 222 1 11 11 1112 122 449999
Q ss_pred EEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeC------cEecccc
Q 047672 162 SIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISN------NCFEQHD 235 (389)
Q Consensus 162 ~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISn------n~f~~H~ 235 (389)
+|...... .....++|.+..++++||++|++..+..-.+.+.. .+..++.+ ..|.++.
T Consensus 100 ~i~~~~~~---------------~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (225)
T PF12708_consen 100 TIDGNGID---------------PNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNT-GTDYRIIGSTHVSGIFIDNGS 163 (225)
T ss_dssp EEEETCGC---------------E-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEEC-CEECEEECCEEEEEEEEESCE
T ss_pred EEEccccc---------------CCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEc-cccCcEeecccceeeeeccce
Confidence 99864311 01125788888899999999999987544445542 22222222 1222211
Q ss_pred eeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccccc--eEEEecceeeCCcceEEeeCCCceEEeeccEEEcCC
Q 047672 236 KVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIG--YAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASN 311 (389)
Q Consensus 236 k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~G--~~Hv~NN~y~n~~~yai~~~~~~~i~~egN~F~~~~ 311 (389)
. .+.+..-++ ... +.- +..+ .+.+-|+++.+....+|....+..+.+++|.|++..
T Consensus 164 ~----------------~~~~~~~~~-~~~--~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 164 N----------------NVIVNNCIF-NGG--DNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp E----------------EEEEECEEE-ESS--SCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred e----------------EEEECCccc-cCC--Cce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 0 111122222 111 111 2222 566777777775557777766777888999988764
No 21
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.41 E-value=0.0081 Score=63.07 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=97.4
Q ss_pred CeEEEEeeceEEEecceEEecCCceEEeeCceeEE---cCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCC
Q 047672 108 PLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEI---ANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRR 184 (389)
Q Consensus 108 p~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~~i---~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~ 184 (389)
..||.|..- ..|.|...=||+|+|..-.- ..-..|++..++||.|++|++++.
T Consensus 104 ~~wI~f~~~------~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NS------------------ 159 (456)
T PLN03003 104 DQWILFTDI------EGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDS------------------ 159 (456)
T ss_pred cceEEEEcc------cceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecC------------------
Confidence 358888642 23555555588888864211 001357888999999999999974
Q ss_pred CCCCCCeEEeeCCceEEEeeeeeec-----CCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEece
Q 047672 185 GGSDGDAIDIFASSYVWVDHCYLAR-----AADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFN 259 (389)
Q Consensus 185 ~~~~gDaI~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN 259 (389)
..=.|.+.+++||.|++.++.. -.||. |+.. |++|+|.+|.|..-+...-+.+..+ +|++.++
T Consensus 160 ---p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGI-Di~~-S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~ 227 (456)
T PLN03003 160 ---PMAHIHISECNYVTISSLRINAPESSPNTDGI-DVGA-SSNVVIQDCIIATGDDCIAINSGTS-------NIHISGI 227 (456)
T ss_pred ---CcEEEEEeccccEEEEEEEEeCCCCCCCCCcE-eecC-cceEEEEecEEecCCCeEEeCCCCc-------cEEEEee
Confidence 2346788899999999999986 47886 8876 8999999999999887777765432 4666666
Q ss_pred EEcCCC------CCcCCc-cccceEEEecceeeCC
Q 047672 260 HFGPGL------IERMPR-VRIGYAHVANNRYEDW 287 (389)
Q Consensus 260 ~fg~~~------~~R~Pr-~R~G~~Hv~NN~y~n~ 287 (389)
.++.+. ..+... -..-.+++-|+.+.+-
T Consensus 228 ~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 228 DCGPGHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred EEECCCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 663221 011000 0012578888888774
No 22
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.37 E-value=0.0062 Score=57.46 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=44.8
Q ss_pred CeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcC
Q 047672 190 DAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERM 269 (389)
Q Consensus 190 DaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~ 269 (389)
.+|.+..++++-|..|.++...+|. .+.. +.+.+|++|.|.+...+.++-.++ ..++.+|.| . ....-
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~~Gi-~l~~-s~~~~I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i-~-~~~~G 125 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNGYGI-YLMG-SSNNTISNNTISNNGYGIYLYGSS--------NNTISNNTI-S-NNGYG 125 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccCCCE-EEEc-CCCcEEECCEecCCCceEEEeeCC--------ceEEECcEE-e-CCCEE
Confidence 4455555555555555555555443 2332 222355555555433333332222 134444444 3 11111
Q ss_pred Ccccc-ceEEEecceeeCCcceEEe-eCCCceEEeeccEE
Q 047672 270 PRVRI-GYAHVANNRYEDWKMYAIG-GSANPTIFSEGNYF 307 (389)
Q Consensus 270 Pr~R~-G~~Hv~NN~y~n~~~yai~-~~~~~~i~~egN~F 307 (389)
=.+.. ....|.+|.+.+-..|+|. ........+.+|+|
T Consensus 126 I~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 126 IYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred EEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 22211 2344455555544344444 33334455555555
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.29 E-value=0.0039 Score=58.85 Aligned_cols=129 Identities=19% Similarity=0.117 Sum_probs=100.1
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
||.+..++++.|++..+.. ..|+|.+..+.++-|..|+++....|+ .+.. +..++|
T Consensus 15 Gi~l~~~~~~~i~~n~i~~----------------------~~~gi~~~~s~~~~I~~n~i~~~~~GI-~~~~-s~~~~i 70 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISN----------------------SRDGIYVENSDNNTISNNTISNNRYGI-HLMG-SSNNTI 70 (236)
T ss_pred cEEEEeCCCCEEEcCEEEe----------------------CCCEEEEEEcCCeEEEeeEEECCCeEE-EEEc-cCCCEE
Confidence 6999999999999999874 358898999999999999999997776 4554 778999
Q ss_pred eCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCcccc-ceEEEecceeeCCcceEEeeCCCceEEeecc
Q 047672 227 SNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRI-GYAHVANNRYEDWKMYAIGGSANPTIFSEGN 305 (389)
Q Consensus 227 Snn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~-G~~Hv~NN~y~n~~~yai~~~~~~~i~~egN 305 (389)
++|.|.+...+.++..+. ..++..|.| .++.. --.+.. ...-|.+|.+.+ ..++|-........+++|
T Consensus 71 ~~n~i~~n~~Gi~l~~s~--------~~~I~~N~i-~~n~~-GI~l~~s~~~~I~~N~i~~-~~~GI~l~~s~~n~I~~N 139 (236)
T PF05048_consen 71 ENNTISNNGYGIYLMGSS--------NNTISNNTI-SNNGY-GIYLYGSSNNTISNNTISN-NGYGIYLSSSSNNTITGN 139 (236)
T ss_pred EeEEEEccCCCEEEEcCC--------CcEEECCEe-cCCCc-eEEEeeCCceEEECcEEeC-CCEEEEEEeCCCCEEECe
Confidence 999999865555554433 359999999 77655 222222 246799999984 457887776688889999
Q ss_pred EEEcC
Q 047672 306 YFMAS 310 (389)
Q Consensus 306 ~F~~~ 310 (389)
.|...
T Consensus 140 ~i~~n 144 (236)
T PF05048_consen 140 TISNN 144 (236)
T ss_pred EEeCC
Confidence 99887
No 24
>PLN02480 Probable pectinesterase
Probab=97.14 E-value=0.0098 Score=60.34 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=76.8
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEe---cCCceEEeeCcee-EEcC---------CceEEEeccccEEEEc
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIM---NSFKTIDGRGAKV-EIAN---------GPCITIQGVSHVIIHG 160 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I---~snkTI~G~ga~~-~i~g---------G~gi~i~~a~NVIIrn 160 (389)
|+.+|+.+ +..+++++=+.|+ ...+|.| ++|+||.|.+... .|.+ +.-+.| .+++++++|
T Consensus 62 TIQ~AIdaap~~~~~~~~I~Ik~Gv--Y~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~n 138 (343)
T PLN02480 62 SVQSAIDAVPVGNSEWIIVHLRKGV--YREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFG 138 (343)
T ss_pred cHHHHHhhCccCCCceEEEEEcCcE--EEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEe
Confidence 57777743 2335555445564 4467778 4679999987442 3332 123444 789999999
Q ss_pred cEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 161 ISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 161 L~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
|+|++..+.+. ....++-||.+. .++++-+.+|.|....|=|.+- ...--+.+|+|..
T Consensus 139 LTf~Nta~~g~------------~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~C~IeG 197 (343)
T PLN02480 139 ISIRNDAPTGM------------AFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY---KGRHYYHSCYIQG 197 (343)
T ss_pred eEEEecCCCCC------------CCCCCCceEEEEecCCcEEEEeeEEecccceeEeC---CCCEEEEeCEEEe
Confidence 99998753111 112345677774 6899999999999999988753 2345566777764
No 25
>PLN03010 polygalacturonase
Probab=97.12 E-value=0.029 Score=58.26 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=88.6
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeec-----CCCCeeEEeecC
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLAR-----AADGLIDVIHAS 221 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s 221 (389)
.|++.+++||.|++|++++.. .=.|.+.+++||.|++..+.. -.||. |+.. +
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp---------------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi-Di~~-s 215 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSP---------------------KNHISIKTCNYVAISKINILAPETSPNTDGI-DISY-S 215 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCC---------------------ceEEEEeccccEEEEEEEEeCCCCCCCCCce-eeec-c
Confidence 477889999999999999742 345788899999999999875 47887 8876 8
Q ss_pred eeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCC----CCCcCCc-cccceEEEecceeeCCcceEEe--e
Q 047672 222 TAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPG----LIERMPR-VRIGYAHVANNRYEDWKMYAIG--G 294 (389)
Q Consensus 222 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~----~~~R~Pr-~R~G~~Hv~NN~y~n~~~yai~--~ 294 (389)
++|+|++|.|..-+...-+.+..+ ...|+..++..|.+ ...+... --.-.+++-|+.+.+-. +++. .
T Consensus 216 ~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt 289 (409)
T PLN03010 216 TNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKT 289 (409)
T ss_pred ceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEE
Confidence 999999999999888877765432 13444444433211 0001000 00125788888887742 2322 1
Q ss_pred CCC-----ceEEeeccEEEcCCC
Q 047672 295 SAN-----PTIFSEGNYFMASND 312 (389)
Q Consensus 295 ~~~-----~~i~~egN~F~~~~~ 312 (389)
..+ ..|.+|+-.+++...
T Consensus 290 ~~G~~G~v~nItf~nI~m~~v~~ 312 (409)
T PLN03010 290 WQGGQGYARNISFENITLINTKN 312 (409)
T ss_pred ecCCCEEEEEeEEEeEEEecCCc
Confidence 111 356666666666543
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.03 E-value=0.012 Score=58.91 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.0
Q ss_pred EEecCCceEEeeCceeEE-cC---------CceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEe
Q 047672 125 LIMNSFKTIDGRGAKVEI-AN---------GPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDI 194 (389)
Q Consensus 125 L~I~snkTI~G~ga~~~i-~g---------G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i 194 (389)
+.|...=||+|+|..=.- .+ -..|++.+++|+.|++|+|++.. .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEE
Confidence 455555699998872100 00 12488889999999999999742 225788
Q ss_pred eCCceEEEeeeeeec-----CCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEE
Q 047672 195 FASSYVWVDHCYLAR-----AADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHF 261 (389)
Q Consensus 195 ~~s~nVWIDHcs~s~-----~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~f 261 (389)
..++||+|+|.++.. -.||. |+.. +.+|+|.+|.|...+-..-+.+... .|++.+++|
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDGi-d~~~-s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~ 183 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDGI-DIDS-SKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTC 183 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--SE-EEES-EEEEEEESEEEESSSESEEESSEEC-------EEEEESEEE
T ss_pred EccCCeEEcceEEEecCCCCCcceE-EEEe-eeEEEEEEeecccccCccccccccc-------ceEEEeEEE
Confidence 899999999999975 36887 8875 8999999999998877666654332 688888888
No 27
>PLN02155 polygalacturonase
Probab=96.99 E-value=0.037 Score=57.19 Aligned_cols=142 Identities=21% Similarity=0.321 Sum_probs=95.2
Q ss_pred eEEEEeeceEEEecceEEecCCceEEeeCceeEE--cC-------CceEEEeccccEEEEccEEEeccCCCCCceecCCC
Q 047672 109 LWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEI--AN-------GPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPD 179 (389)
Q Consensus 109 ~~Ivf~~~~~I~l~~~L~I~snkTI~G~ga~~~i--~g-------G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~ 179 (389)
.||.|..- ..+.|.. =||+|+|..--- .. -..|++.+++||.|++|++++.
T Consensus 107 ~wi~~~~~------~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nS------------- 166 (394)
T PLN02155 107 YWILFNKV------NRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNS------------- 166 (394)
T ss_pred eeEEEECc------CCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcC-------------
Confidence 46666542 2344444 678888864211 00 0247788999999999999974
Q ss_pred CCCCCCCCCCCeEEeeCCceEEEeeeeeec-----CCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEE
Q 047672 180 HVGRRGGSDGDAIDIFASSYVWVDHCYLAR-----AADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKV 254 (389)
Q Consensus 180 ~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~V 254 (389)
..=.|.+.+++||.|+|.++.. -.||. |+.. +++|+|++|.|..-+-...+++..+ +|
T Consensus 167 --------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGi-di~~-s~nV~I~~~~I~~gDDcIaik~gs~-------nI 229 (394)
T PLN02155 167 --------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGF-HVQF-STGVTFTGSTVQTGDDCVAIGPGTR-------NF 229 (394)
T ss_pred --------CCeEEEEECeeeEEEEEEEEECCCCCCCCCcc-cccc-ceeEEEEeeEEecCCceEEcCCCCc-------eE
Confidence 2345788899999999999975 35776 8775 8999999999998887877776532 57
Q ss_pred EEeceEEcCCC------CCcCC-ccccceEEEecceeeCC
Q 047672 255 TIAFNHFGPGL------IERMP-RVRIGYAHVANNRYEDW 287 (389)
Q Consensus 255 T~hhN~fg~~~------~~R~P-r~R~G~~Hv~NN~y~n~ 287 (389)
++.++.++.+. ..+.+ .-.+-.+.|-|+.+.+.
T Consensus 230 ~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS 269 (394)
T ss_pred EEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence 77776663211 11122 11122678888888774
No 28
>PLN02793 Probable polygalacturonase
Probab=96.96 E-value=0.067 Score=56.14 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=78.3
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeec-----CCCCeeEEeecC
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLAR-----AADGLIDVIHAS 221 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s 221 (389)
.|.+.+++||.|++|++++.. .=.|.+..++||.|++.++.. -.||. |+.. +
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp---------------------~~~i~~~~~~nv~i~~l~I~~p~~spNTDGI-di~~-s 235 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQ---------------------QMHIAFTNCRRVTISGLKVIAPATSPNTDGI-HISA-S 235 (443)
T ss_pred EEEEEeeccEEEECeEEEcCC---------------------CeEEEEEccCcEEEEEEEEECCCCCCCCCcE-eeec-c
Confidence 477889999999999999742 234778889999999999975 47887 8876 8
Q ss_pred eeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCC----C--cCCc-cccceEEEecceeeCC
Q 047672 222 TAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLI----E--RMPR-VRIGYAHVANNRYEDW 287 (389)
Q Consensus 222 ~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~----~--R~Pr-~R~G~~Hv~NN~y~n~ 287 (389)
++|+|++|.|...+-...+.++. .+|++.++.++.+.. + +... ...-.+.|-|+.+.+-
T Consensus 236 ~nV~I~n~~I~~gDDcIaik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t 301 (443)
T PLN02793 236 RGVVIKDSIVRTGDDCISIVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNT 301 (443)
T ss_pred ceEEEEeCEEeCCCCeEEecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCC
Confidence 99999999999988777775432 257777777632211 0 1000 0011477777777764
No 29
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.86 E-value=0.055 Score=56.10 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=101.9
Q ss_pred eEEecCCceEEeeCceeEE------c-C----CceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeE
Q 047672 124 ELIMNSFKTIDGRGAKVEI------A-N----GPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAI 192 (389)
Q Consensus 124 ~L~I~snkTI~G~ga~~~i------~-g----G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI 192 (389)
.|.|...=||+|+|..-.. . + ..-|.+..++||.|++|+|++. ..=.|
T Consensus 123 ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS---------------------p~w~i 181 (404)
T PLN02188 123 GLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS---------------------KFFHI 181 (404)
T ss_pred eEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC---------------------CCeEE
Confidence 3555556678888763110 0 0 1246778999999999999974 23467
Q ss_pred EeeCCceEEEeeeeeec-----CCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCC--
Q 047672 193 DIFASSYVWVDHCYLAR-----AADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGL-- 265 (389)
Q Consensus 193 ~i~~s~nVWIDHcs~s~-----~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~-- 265 (389)
.+..++||.|++.++.. -.||. |+.. +++|+|.+|.|..-+...-+++..+ +|++.++.++.+.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGi-di~~-s~nV~I~n~~I~~GDDcIaiksg~~-------nI~I~n~~c~~ghGi 252 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGI-HIER-SSGVYISDSRIGTGDDCISIGQGNS-------QVTITRIRCGPGHGI 252 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcE-eeeC-cccEEEEeeEEeCCCcEEEEccCCc-------cEEEEEEEEcCCCcE
Confidence 88899999999999986 46787 8876 8999999999999887777754321 4667666662111
Q ss_pred ----CCcCCc-cccceEEEecceeeCCcceEEee-----CC----CceEEeeccEEEcCCC
Q 047672 266 ----IERMPR-VRIGYAHVANNRYEDWKMYAIGG-----SA----NPTIFSEGNYFMASND 312 (389)
Q Consensus 266 ----~~R~Pr-~R~G~~Hv~NN~y~n~~~yai~~-----~~----~~~i~~egN~F~~~~~ 312 (389)
..+.+. -....+.+-|+.+.+-. +++.. +. -..|.+|+-.+++...
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~ 312 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFENIVMNNVTN 312 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEEeEEecCccc
Confidence 000000 11225778888887742 33331 11 1366777777766653
No 30
>PLN02682 pectinesterase family protein
Probab=96.60 E-value=0.035 Score=56.85 Aligned_cols=118 Identities=17% Similarity=0.227 Sum_probs=73.5
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEe---cCCceEEeeCceeE-EcC----------C--------ceEEEe
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIM---NSFKTIDGRGAKVE-IAN----------G--------PCITIQ 151 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I---~snkTI~G~ga~~~-i~g----------G--------~gi~i~ 151 (389)
|+.+||.. +..+++++=+.|+ ....|.| ++|+||.|.|...+ |.. | +-+. .
T Consensus 84 TIQ~AIdavP~~~~~r~vI~Ik~G~--Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~-v 160 (369)
T PLN02682 84 TIQAAIDSLPVINLVRVVIKVNAGT--YREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFA-V 160 (369)
T ss_pred CHHHHHhhccccCCceEEEEEeCce--eeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEE-E
Confidence 56667643 2223444434553 4466777 47899999986543 321 1 1122 3
Q ss_pred ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcE
Q 047672 152 GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNC 230 (389)
Q Consensus 152 ~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~ 230 (389)
.+++++.+||+|++..+..+ + ...++-|+.+. .++++-+.+|.|....|=|.+- ...--+.+|+
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~------~------g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~ 225 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPP------P------GALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCY 225 (369)
T ss_pred ECCCeEEEeeEEEcccccCC------C------CCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeE
Confidence 78899999999998653110 0 11233455554 4789999999999999988763 3355667777
Q ss_pred ecc
Q 047672 231 FEQ 233 (389)
Q Consensus 231 f~~ 233 (389)
|+.
T Consensus 226 IeG 228 (369)
T PLN02682 226 IEG 228 (369)
T ss_pred Ecc
Confidence 764
No 31
>smart00656 Amb_all Amb_all domain.
Probab=96.43 E-value=0.14 Score=47.54 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeee
Q 047672 129 SFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYL 207 (389)
Q Consensus 129 snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~ 207 (389)
.|++|.+..... ..++-+|.+..++||+|.+.+|....... .........+.+. ++.+|=|-.|.|
T Consensus 45 rnl~i~~~~~~~-~~~~D~i~~~~~~~VwIDHct~s~~~~~~------------~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 45 RNLTIHDPKPVY-GSDGDAISIDGSSNVWIDHVSLSGCTVTG------------FGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eCCEEECCccCC-CCCCCEEEEeCCCeEEEEccEeEcceecc------------CCCCCCCccEEECcccccEEEECceE
Confidence 578888753321 12334788899999999999999752111 0011122344554 578888888888
Q ss_pred ecCCCCeeEEeecC------eeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCcccc-ceEEEe
Q 047672 208 ARAADGLIDVIHAS------TAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRI-GYAHVA 280 (389)
Q Consensus 208 s~~~DgliDi~~~s------~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~-G~~Hv~ 280 (389)
....-++|-....+ -.||+-+|+|.+.. +..+.. +.-++-+.+|+| .+..+..-.+|. +.+.+-
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~-----~R~P~~---r~g~~hv~NN~~-~n~~~~~~~~~~~~~v~~E 182 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLR-----QRAPRV---RFGYVHVYNNYY-TGWTSYAIGGRMGATILSE 182 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCcc-----cCCCcc---cCCEEEEEeeEE-eCcccEeEecCCCcEEEEE
Confidence 76655554332222 27999999998532 111110 112578899999 777544333342 589999
Q ss_pred cceeeCC
Q 047672 281 NNRYEDW 287 (389)
Q Consensus 281 NN~y~n~ 287 (389)
||||++.
T Consensus 183 ~N~F~~~ 189 (190)
T smart00656 183 GNYFEAP 189 (190)
T ss_pred CeEEECC
Confidence 9999873
No 32
>PLN02197 pectinesterase
Probab=96.30 E-value=0.07 Score=57.82 Aligned_cols=151 Identities=19% Similarity=0.221 Sum_probs=90.1
Q ss_pred cCcchhc--ccccccCCCccccCCCCCCCCCc---EEEeCCCCCCCCCCCch---hhhhhhhc----CCCeEEEEeeceE
Q 047672 51 AKSNWAV--NRKALTDCVVGFGKGTLGGKYGA---IYVVTDPSDDPVNPKLG---TLRYGVIQ----TKPLWIIFAKDMV 118 (389)
Q Consensus 51 ~~~~w~~--~r~~la~~a~Gfg~~ttGG~gG~---vv~VT~~~d~~~~~~pG---tLr~a~~~----~~p~~Ivf~~~~~ 118 (389)
..|.|-. +|+.|+. .+.|+++-||..+. .++|.- | +.| |+.+|+.. +..++|++=+.|+
T Consensus 243 ~~p~w~~~~~r~ll~~--~~~~~~~~~~~~~~~~~~~vVa~--d-----GsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv 313 (588)
T PLN02197 243 GIPTWVSGADRKLMAK--AGRGANAGGGGGGKIKATHVVAK--D-----GSGQFKTISQAVMACPDKNPGRCIIHIKAGI 313 (588)
T ss_pred CCCCCCCccchhhhcc--CcccccccccccccccccEEEcC--C-----CCCCcCCHHHHHHhccccCCceEEEEEeCce
Confidence 3588865 4666643 44555666666553 233321 2 444 56777754 3335555555664
Q ss_pred EEecceEEec---CCceEEeeCceeE-Ec--------CCce-----EEEeccccEEEEccEEEeccCCCCCceecCCCCC
Q 047672 119 IRLKNELIMN---SFKTIDGRGAKVE-IA--------NGPC-----ITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHV 181 (389)
Q Consensus 119 I~l~~~L~I~---snkTI~G~ga~~~-i~--------gG~g-----i~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~ 181 (389)
....|.|. +|+||.|.|...+ |. +|.+ -....+++++.|||+|++...
T Consensus 314 --Y~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag------------- 378 (588)
T PLN02197 314 --YNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAG------------- 378 (588)
T ss_pred --EEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEEECCcEEEEEeEEEeCCC-------------
Confidence 44667774 6899999887543 32 2211 111378999999999998531
Q ss_pred CCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 182 GRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 182 g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
..+.-|+-+. .+.+.-+.+|.|....|=|.+- +..--+.+|+|+
T Consensus 379 ----~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~ 423 (588)
T PLN02197 379 ----PMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVN---NGRQFYRNIVVS 423 (588)
T ss_pred ----CCCCceEEEEecCCcEEEEEeEEEecCcceEec---CCCEEEEeeEEE
Confidence 1123455554 4789999999999988877642 223344555554
No 33
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.25 E-value=0.049 Score=58.34 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=79.0
Q ss_pred CCceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeee
Q 047672 129 SFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLA 208 (389)
Q Consensus 129 snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s 208 (389)
.|+++.|..=... .-+++.++.++|+.++||+|..-. ....|+|.+..++||-|+-|.|+
T Consensus 247 ~NV~~~g~~i~ns--~~~~~h~~~~~nl~~~nl~I~~~~------------------~~NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 247 RNVLLEGLNIKNS--PLWTVHPVDCDNLTFRNLTIDANR------------------FDNTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred ceEEEeeeEecCC--CcEEEeeecccCceecceEEECCC------------------CCCCCccccccceeEEEeccEEe
Confidence 4566666522110 014677789999999999998532 12689999999999999999999
Q ss_pred cCCCCeeEEe-----------ecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCcc
Q 047672 209 RAADGLIDVI-----------HASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRV 272 (389)
Q Consensus 209 ~~~DgliDi~-----------~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~ 272 (389)
.+-| .|-++ ..+.+|+|++|+|..-.-+..+|+.- .-+-..|++-.|.| .+ ..|.-|+
T Consensus 307 tgDD-~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~-~~-~d~GLRi 375 (542)
T COG5434 307 TGDD-CIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVM-DN-TDRGLRI 375 (542)
T ss_pred cCCc-eEEeecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeee-cc-Ccceeee
Confidence 8433 33332 33468999999999544444555422 11235789989998 55 4455555
No 34
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.24 Score=50.16 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=75.2
Q ss_pred ceEEecCCceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEE
Q 047672 123 NELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWV 202 (389)
Q Consensus 123 ~~L~I~snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWI 202 (389)
.-|.+....|-++.-.+-.+....||.+.++.++.|+.-+|.+-.. .+....|++|++.++..+-|
T Consensus 98 agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~--------------~r~~~rGnGI~vyNa~~a~V 163 (408)
T COG3420 98 AGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLAD--------------LRVAERGNGIYVYNAPGALV 163 (408)
T ss_pred ceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccc--------------cchhhccCceEEEcCCCcEE
Confidence 4456666777777655544555689999999999999999997531 13457799999999999999
Q ss_pred eeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 203 DHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 203 DHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
--+++|...||... .-|..-+|+.|.|++
T Consensus 164 ~~ndisy~rDgIy~--~~S~~~~~~gnr~~~ 192 (408)
T COG3420 164 VGNDISYGRDGIYS--DTSQHNVFKGNRFRD 192 (408)
T ss_pred EcCccccccceEEE--cccccceecccchhh
Confidence 99999999999963 336788899999986
No 35
>PLN02176 putative pectinesterase
Probab=96.09 E-value=0.11 Score=52.65 Aligned_cols=119 Identities=13% Similarity=0.153 Sum_probs=75.5
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeEEc---C------CceEEEeccccEEEEcc
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVEIA---N------GPCITIQGVSHVIIHGI 161 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~i~---g------G~gi~i~~a~NVIIrnL 161 (389)
|+.+||.. +..+++++=+.|+ ....|.|. +|+||.|.|...++. + ..-+.+ .+++++.+||
T Consensus 53 TIq~AIdavP~~~~~~~~I~Ik~Gv--Y~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nl 129 (340)
T PLN02176 53 TVQSAIDSIPLQNQNWIRILIQNGI--YREKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGI 129 (340)
T ss_pred CHHHHHhhchhcCCceEEEEECCcE--EEEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEee
Confidence 46666643 2335555555664 44677774 689999998754332 1 113334 7899999999
Q ss_pred EEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 162 SIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 162 ~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
+|++..+..+ ......+-|+-+. .++++-+.+|.|....|=|.+- ...--+.+|+|+.
T Consensus 130 T~~Nt~~~~~-----------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIeG 188 (340)
T PLN02176 130 TFKNTYNIAS-----------NSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVISG 188 (340)
T ss_pred EEEeCCCccC-----------CCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEEe
Confidence 9998753110 0011234555554 4788999999999988888763 3355666777764
No 36
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.06 E-value=0.03 Score=51.19 Aligned_cols=122 Identities=24% Similarity=0.265 Sum_probs=69.2
Q ss_pred CCceEEeeCceeEEcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCC-eEEeeC-CceEEEeeee
Q 047672 129 SFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGD-AIDIFA-SSYVWVDHCY 206 (389)
Q Consensus 129 snkTI~G~ga~~~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gD-aI~i~~-s~nVWIDHcs 206 (389)
.+.+|+|.+....-. ..++.+..++|+.|+|+++++.. ..+..-...+.+.. ...... ++.++. +.++.+..|.
T Consensus 97 ~nl~i~~~~~~~~~~-~~~i~~~~~~~~~i~nv~~~~~~--~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 172 (225)
T PF12708_consen 97 RNLTIDGNGIDPNNN-NNGIRFNSSQNVSISNVRIENSG--GDGIYFNTGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCI 172 (225)
T ss_dssp EEEEEEETCGCE-SC-EEEEEETTEEEEEEEEEEEES-S--S-SEEEECCEECEE-ECCEEEEEEEEESCEEEEEEECEE
T ss_pred EeeEEEcccccCCCC-ceEEEEEeCCeEEEEeEEEEccC--ccEEEEEccccCcE-eecccceeeeeccceeEEEECCcc
Confidence 368888876542111 25788989999999999999753 12221100000000 001111 444543 3345557777
Q ss_pred eecCCCCeeEEeecCeeEEEeCcEecc-cceeEEeCCCCcccCCCceEEEEeceEEcCCCC
Q 047672 207 LARAADGLIDVIHASTAVTISNNCFEQ-HDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLI 266 (389)
Q Consensus 207 ~s~~~DgliDi~~~s~~VTISnn~f~~-H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~ 266 (389)
+..+.+| +..+.++++|+||.|.. ...+..+-... .+++.+|.| .++.
T Consensus 173 ~~~~~~g---~~~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 173 FNGGDNG---IILGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTI-ENCD 221 (225)
T ss_dssp EESSSCS---EECEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEE-ESSS
T ss_pred ccCCCce---eEeecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEE-ECCc
Confidence 7778888 34445799999999986 44444332222 378888888 6664
No 37
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=95.97 E-value=0.33 Score=47.21 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=98.9
Q ss_pred hhhhhhhcCCCe-EEEEeeceEEEec----ceEEecCCceEEeeCce-----eEEcCC-c--------------eEEEec
Q 047672 98 TLRYGVIQTKPL-WIIFAKDMVIRLK----NELIMNSFKTIDGRGAK-----VEIANG-P--------------CITIQG 152 (389)
Q Consensus 98 tLr~a~~~~~p~-~Ivf~~~~~I~l~----~~L~I~snkTI~G~ga~-----~~i~gG-~--------------gi~i~~ 152 (389)
||.+|+..-.|- +|.+. .|+-+-. -+|.+++.+||.|.... +.+.++ . .++|..
T Consensus 17 Ti~~A~~~a~~g~~i~l~-~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~ 95 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLA-PGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIIL 95 (246)
T ss_pred HHHHHHHhCCCCCEEEEC-CceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEe
Confidence 466777654443 44443 3443322 35788888888885331 222211 1 144556
Q ss_pred cccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecC-CCCeeEEe----ecCeeEEEe
Q 047672 153 VSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARA-ADGLIDVI----HASTAVTIS 227 (389)
Q Consensus 153 a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~-~DgliDi~----~~s~~VTIS 227 (389)
+++..|++++|++.. ...+-||.|+++ +.-|..|+|+.+ .+|..... ....+++|+
T Consensus 96 ~~~~~i~GvtItN~n------------------~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~ 156 (246)
T PF07602_consen 96 ANNATISGVTITNPN------------------IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVIS 156 (246)
T ss_pred cCCCEEEEEEEEcCC------------------CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEee
Confidence 788888999998742 135778999776 788899999995 66643211 133567788
Q ss_pred CcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCC------cCCccccc-eEEEecceeeCCcceEEeeCC--Cc
Q 047672 228 NNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIE------RMPRVRIG-YAHVANNRYEDWKMYAIGGSA--NP 298 (389)
Q Consensus 228 nn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~------R~Pr~R~G-~~Hv~NN~y~n~~~yai~~~~--~~ 298 (389)
.|.+.....+.-+-... .. ....+-+|++ .++.+ ..|.+..+ ..-+=||.+.+...|.+.-.. .-
T Consensus 157 GN~~~~~~~Gi~i~~~~--~~---~~n~I~NN~I-~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~ 230 (246)
T PF07602_consen 157 GNSIYFNKTGISISDNA--AP---VENKIENNII-ENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQ 230 (246)
T ss_pred cceEEecCcCeEEEccc--CC---ccceeeccEE-EeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCce
Confidence 87766433322221111 00 0112344555 43222 11333221 233556777666666665522 23
Q ss_pred eEEeeccEEE
Q 047672 299 TIFSEGNYFM 308 (389)
Q Consensus 299 ~i~~egN~F~ 308 (389)
++++.||-..
T Consensus 231 ~l~a~gN~ld 240 (246)
T PF07602_consen 231 TLYAVGNQLD 240 (246)
T ss_pred eEEEeCCccC
Confidence 6666666554
No 38
>PLN02665 pectinesterase family protein
Probab=95.91 E-value=0.61 Score=47.90 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=71.7
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCC-----------ceEEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANG-----------PCITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG-----------~gi~i~~a~NVII 158 (389)
|+.+|+.. +..++|++=+.|+ ....|.|. +++||.|.+...+ |... +-+ ...+++++.
T Consensus 82 TIq~AIdaiP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv-~v~a~~F~a 158 (366)
T PLN02665 82 TITDAIKSIPAGNTQRVIIDIGPGE--YNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATL-IVESDYFMA 158 (366)
T ss_pred CHHHHHhhCcccCCceEEEEEeCcE--EEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEE-EEECCCeEE
Confidence 56777753 2335556555664 44677774 6889999876432 3211 112 237899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
+||+|++..|..++ ...++-|+.+. .++++-+.+|.|....|=|.|-. ..--+.+|+|+
T Consensus 159 ~nitf~Nta~~~~~------------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~---gr~yf~~CyIe 218 (366)
T PLN02665 159 ANIIIKNSAPRPDG------------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK---GRHFFKDCYIE 218 (366)
T ss_pred EeeEEEeCCCCcCC------------CCCCcceEEEEEcCCcEEEEcceeccccceeEeCC---CCEEEEeeEEe
Confidence 99999997542211 01223444443 46889999999999888777532 23445555555
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.26 Score=50.01 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=83.0
Q ss_pred cceEEecCCceEEeeCceeEEcCCceEEEe-ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCce
Q 047672 122 KNELIMNSFKTIDGRGAKVEIANGPCITIQ-GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSY 199 (389)
Q Consensus 122 ~~~L~I~snkTI~G~ga~~~i~gG~gi~i~-~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~n 199 (389)
...+.|+.-+|+-|.-....-++|.|-.+. .+.++|||+|+.|+.-... ..-+-+|-+. .++.
T Consensus 44 ~g~~vInr~l~l~ge~ga~l~g~g~G~~vtv~aP~~~v~Gl~vr~sg~~l---------------p~m~agI~v~~~at~ 108 (408)
T COG3420 44 AGNFVINRALTLRGENGAVLDGGGKGSYVTVAAPDVIVEGLTVRGSGRSL---------------PAMDAGIFVGRTATG 108 (408)
T ss_pred cccEEEccceeeccccccEEecCCcccEEEEeCCCceeeeEEEecCCCCc---------------ccccceEEeccCccc
Confidence 355777777777776332322233444443 8899999999999642222 2234556653 5777
Q ss_pred EEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc---------cceeEE--------eCCCCcccCCCceEEEEeceEEc
Q 047672 200 VWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ---------HDKVML--------LGHNDQFTADKIMKVTIAFNHFG 262 (389)
Q Consensus 200 VWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~---------H~k~~L--------iG~sd~~~~d~~~~VT~hhN~fg 262 (389)
--|.||++-.+.-|.. .+++..+-|--|.+.. -+-+.+ .|..-++..|.-..=|=+||.|
T Consensus 109 A~Vr~N~l~~n~~Gi~--l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~- 185 (408)
T COG3420 109 AVVRHNDLIGNSFGIY--LHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVF- 185 (408)
T ss_pred ceEEcccccccceEEE--EeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccccccee-
Confidence 7888888888777763 3456666666666652 122333 3433344445544445589999
Q ss_pred CCCCCcCCccccce
Q 047672 263 PGLIERMPRVRIGY 276 (389)
Q Consensus 263 ~~~~~R~Pr~R~G~ 276 (389)
.++ |+-.+|||.
T Consensus 186 ~gn--r~~~~Rygv 197 (408)
T COG3420 186 KGN--RFRDLRYGV 197 (408)
T ss_pred ccc--chhheeeeE
Confidence 777 888889874
No 40
>PLN02432 putative pectinesterase
Probab=95.62 E-value=0.18 Score=50.24 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=71.5
Q ss_pred hhhhhhhc-----CCCeEEEEeeceEEEecceEEe---cCCceEEeeCceeEEc-C--------CceEEEeccccEEEEc
Q 047672 98 TLRYGVIQ-----TKPLWIIFAKDMVIRLKNELIM---NSFKTIDGRGAKVEIA-N--------GPCITIQGVSHVIIHG 160 (389)
Q Consensus 98 tLr~a~~~-----~~p~~Ivf~~~~~I~l~~~L~I---~snkTI~G~ga~~~i~-g--------G~gi~i~~a~NVIIrn 160 (389)
|+.+||.. .+|.+|.+ +.| .....|.| ++|+||.|.+...++. . .+-+.+ .++|++.+|
T Consensus 25 TIq~Aida~p~~~~~~~~I~I-~~G--~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 25 KIQDAIDAVPSNNSQLVFIWV-KPG--IYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred CHHHHHhhccccCCceEEEEE-eCc--eeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 46666643 23444444 455 34566777 3789999987654332 1 112323 789999999
Q ss_pred cEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 161 ISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 161 L~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
|+|++..+ ..+-|+.+. .+.++-+.+|.|....|=|++- ...--+.+|+|+.
T Consensus 101 lt~~Nt~g------------------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~G 153 (293)
T PLN02432 101 LTIQNTFG------------------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIEG 153 (293)
T ss_pred eEEEeCCC------------------CCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEEe
Confidence 99998642 123455554 4788999999999999988752 3345666777764
No 41
>PLN02634 probable pectinesterase
Probab=95.17 E-value=0.38 Score=49.28 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=72.3
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeEEc-----------CC--------ceEEEe
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVEIA-----------NG--------PCITIQ 151 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~i~-----------gG--------~gi~i~ 151 (389)
|+.+||.. +..+++++=+.|+ ....|.|. +|+||.|.|...++. +| .-+. .
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~-V 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGF--YREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVT-V 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCce--EEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEE-E
Confidence 35556643 2224444444554 44667773 789999998765432 01 1122 2
Q ss_pred ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcE
Q 047672 152 GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNC 230 (389)
Q Consensus 152 ~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~ 230 (389)
.+++++.+||+|++..+.... ...++-|+.+. .++++-+.+|.|....|=|.+- ...--+.+|+
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~------------g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~Cy 211 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMP------------GMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECY 211 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCC------------CCCCCceEEEEecCCcEEEEEeEEecccceeeeC---CCCEEEEeeE
Confidence 689999999999987532100 12334455554 4788999999999998888753 2345566677
Q ss_pred ecc
Q 047672 231 FEQ 233 (389)
Q Consensus 231 f~~ 233 (389)
|..
T Consensus 212 IeG 214 (359)
T PLN02634 212 IEG 214 (359)
T ss_pred Ecc
Confidence 664
No 42
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.15 E-value=0.21 Score=53.67 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVI 157 (389)
|+.+||.. +..++|++=+.|+ ....|.|. +|+||+|.|...+ |.+ |. -+.+ .+++++
T Consensus 244 TIq~Ai~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~ 320 (541)
T PLN02416 244 TITDAINFAPNNSNDRIIIYVREGV--YEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFL 320 (541)
T ss_pred CHHHHHHhhhhcCCceEEEEEeCce--eEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeE
Confidence 46667753 4446666656674 34667774 7899999987543 332 11 1233 689999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
.|||.|++..+ ...+-|+-+. .+.++-+-+|.|....|=|.+- +..--..+|+|+
T Consensus 321 a~nitf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 376 (541)
T PLN02416 321 ARDITIENTAG-----------------PEKHQAVALRVNADLVALYRCTINGYQDTLYVH---SFRQFYRECDIY 376 (541)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEEcCccEEEEcceEecccchhccC---CCceEEEeeEEe
Confidence 99999998631 1123444443 4788889999999877766542 233445555554
No 43
>PLN02773 pectinesterase
Probab=94.99 E-value=1.7 Score=43.85 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=66.8
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC----------------C------ce
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN----------------G------PC 147 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g----------------G------~g 147 (389)
|+.+||.. +..++++|=+.|+ ....|.|. +|+||.|.+...+ |.. | .-
T Consensus 19 TIq~Aida~P~~~~~~~~I~Ik~G~--Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaT 96 (317)
T PLN02773 19 TVQDAIDAVPLCNRCRTVIRVAPGV--YRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGT 96 (317)
T ss_pred CHHHHHhhchhcCCceEEEEEeCce--EEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceE
Confidence 46666643 2224444444563 44677774 5799999876432 220 0 11
Q ss_pred EEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEE
Q 047672 148 ITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTI 226 (389)
Q Consensus 148 i~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTI 226 (389)
+. ..++|++.+||+|++..+. ..+-|+.+. .+.++-+.+|.|....|=|.+- ...--+
T Consensus 97 v~-v~a~~f~a~nlT~~Nt~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf 155 (317)
T PLN02773 97 VI-VEGEDFIAENITFENSAPE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYL 155 (317)
T ss_pred EE-EECCCeEEEeeEEEeCCCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEE
Confidence 22 3789999999999986421 123454443 4688999999998877777642 123444
Q ss_pred eCcEec
Q 047672 227 SNNCFE 232 (389)
Q Consensus 227 Snn~f~ 232 (389)
.+|+|+
T Consensus 156 ~~c~Ie 161 (317)
T PLN02773 156 RDCYIE 161 (317)
T ss_pred EeeEEe
Confidence 555554
No 44
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.97 E-value=1.9 Score=46.44 Aligned_cols=167 Identities=12% Similarity=0.154 Sum_probs=97.4
Q ss_pred hhhhhhhc---CC----CeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc-----eEEEecccc
Q 047672 98 TLRYGVIQ---TK----PLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP-----CITIQGVSH 155 (389)
Q Consensus 98 tLr~a~~~---~~----p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~-----gi~i~~a~N 155 (389)
|+.+||.. .. .++||+=+.|+- ...|.|. .|+||+|.|.+.+ |.+ |. ......+++
T Consensus 237 TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v~~~~ 314 (538)
T PLN03043 237 TITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAVSGER 314 (538)
T ss_pred CHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEEECCC
Confidence 46667643 11 155665566643 4667773 7899999987543 322 21 111237799
Q ss_pred EEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCC-----------------CeeEE
Q 047672 156 VIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAAD-----------------GLIDV 217 (389)
Q Consensus 156 VIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~D-----------------gliDi 217 (389)
+|.|||.|++... + ...-|+-+. .+...-+.+|.|....| |.+|.
T Consensus 315 F~a~~it~~Ntag--~---------------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDF 377 (538)
T PLN03043 315 FVAVDVTFRNTAG--P---------------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDF 377 (538)
T ss_pred EEEEeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccce
Confidence 9999999998531 1 234566554 47888899999987544 55566
Q ss_pred eecCeeEEEeCcEeccc-----ceeEEeCCCCcccCCCceEEEEeceEEcCCCC-------------CcCCccccceEEE
Q 047672 218 IHASTAVTISNNCFEQH-----DKVMLLGHNDQFTADKIMKVTIAFNHFGPGLI-------------ERMPRVRIGYAHV 279 (389)
Q Consensus 218 ~~~s~~VTISnn~f~~H-----~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~-------------~R~Pr~R~G~~Hv 279 (389)
.-|.-.+-+++|.|.-. .+.++--++.+. .+...-+.|+++.+ .... .| |.-.+..+-+
T Consensus 378 IFG~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i-~~~~~~~~~~~~~~~yLGR-pW~~ysr~v~ 454 (538)
T PLN03043 378 IFGNAAAIFQNCNLYARKPMANQKNAFTAQGRTD-PNQNTGISIINCTI-EAAPDLAMDPNSTMNFLGR-PWKPYSRTVY 454 (538)
T ss_pred EeecceeeeeccEEEEecCCCCCCceEEecCCCC-CCCCceEEEEecEE-ecCCcccccccccceeccC-CCCCCceEEE
Confidence 66677778888888642 122222111111 11224577888877 3321 12 3223556777
Q ss_pred ecceeeC
Q 047672 280 ANNRYED 286 (389)
Q Consensus 280 ~NN~y~n 286 (389)
.|.++.+
T Consensus 455 ~~s~i~~ 461 (538)
T PLN03043 455 MQSYIGD 461 (538)
T ss_pred EecccCC
Confidence 7777665
No 45
>PLN02304 probable pectinesterase
Probab=94.87 E-value=0.48 Score=48.84 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=75.2
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEe---cCCceEEeeCceeE-EcCC--c---------eEEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIM---NSFKTIDGRGAKVE-IANG--P---------CITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I---~snkTI~G~ga~~~-i~gG--~---------gi~i~~a~NVII 158 (389)
|+.+||.+ +..+++|+=+.|+ ...+|.| ++|+||.|.|...+ |... . .-....+++++.
T Consensus 89 TIQ~AIdavP~~~~~r~vI~Ik~Gv--Y~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v~a~~F~a 166 (379)
T PLN02304 89 TVQSAVDAVGNFSQKRNVIWINSGI--YYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQVFASNFIA 166 (379)
T ss_pred CHHHHHhhCcccCCCcEEEEEeCeE--eEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEEECCCeEE
Confidence 56777743 2234545445563 4467777 37899999987543 2210 0 111236899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
+||+|++..+... + ...++-|+-+. .+.++-+.+|.|....|=|.+- ...--+.+|+|..
T Consensus 167 ~nITf~Nta~~~~------~------g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIeG 227 (379)
T PLN02304 167 KNISFMNVAPIPK------P------GDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQG 227 (379)
T ss_pred EeeEEEecCCCCC------C------CCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEcc
Confidence 9999998753210 0 11234455554 4789999999999999999863 2345567777764
No 46
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.86 E-value=2.1 Score=46.25 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=73.3
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeEE-cC------Cce-----EEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVEI-AN------GPC-----ITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~i-~g------G~g-----i~i~~a~NVII 158 (389)
|+.+||.. ...++|++=+.|+ ....|.|. +|+||.|.|...++ .+ |.+ -....+++++.
T Consensus 250 TIq~Ai~a~P~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v~~~~F~a 327 (548)
T PLN02301 250 TVKEAVASAPDNSKTRYVIYVKKGT--YKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVAAVGDGFIA 327 (548)
T ss_pred cHHHHHHhhhhcCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEEEECCceEE
Confidence 46667643 3335566556665 44667774 68999999875433 21 211 11137899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCC-----------------CeeEEeec
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAAD-----------------GLIDVIHA 220 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~D-----------------gliDi~~~ 220 (389)
|||.|++... + ...-|+-+. .+.++-+.+|.|....| |.+|..-|
T Consensus 328 ~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG 390 (548)
T PLN02301 328 QDIWFQNTAG--P---------------EKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFG 390 (548)
T ss_pred EeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecc
Confidence 9999998531 1 123444443 46888899999987654 45566556
Q ss_pred CeeEEEeCcEec
Q 047672 221 STAVTISNNCFE 232 (389)
Q Consensus 221 s~~VTISnn~f~ 232 (389)
.-..-+++|.|+
T Consensus 391 ~a~avfq~c~i~ 402 (548)
T PLN02301 391 NAAVVFQNCKIV 402 (548)
T ss_pred cceeEEeccEEE
Confidence 666677777775
No 47
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=94.74 E-value=0.34 Score=51.89 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=69.0
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cce-----EEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GPC-----ITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~g-----i~i~~a~NVII 158 (389)
|+.+|+.+ +..+++++=+.|+ ....|.|. +|+||+|.|...+ |.+ |.+ -....+++++.
T Consensus 220 TIq~Ai~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~F~a 297 (520)
T PLN02201 220 TIMDAVLAAPDYSTKRYVIYIKKGV--YLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIA 297 (520)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCce--eEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEEECCCeEE
Confidence 46666643 2234444445564 34667774 6899999986543 321 211 11137899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
+||+|++..+ + ..+-|+-+. .+.+.-+.+|.|....|=|.+-. ..--..+|+|+
T Consensus 298 ~nitf~Ntag--~---------------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~---~Rqyy~~C~I~ 352 (520)
T PLN02201 298 RDITFQNTAG--P---------------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT---MRQFYRECRIT 352 (520)
T ss_pred EeeEEEECCC--C---------------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC---CCEEEEeeEEe
Confidence 9999998642 1 123555554 47889999999998888776532 23344555554
No 48
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=94.74 E-value=1.9 Score=47.58 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=97.5
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeEE-cC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVEI-AN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~i-~g------G~------gi~i~~a~NVI 157 (389)
|+.+||.. +..++||+=+.|+ ....|.|. .|+||+|.|...++ .+ |. -+. ..+++++
T Consensus 264 TIq~Av~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~-v~g~~F~ 340 (670)
T PLN02217 264 TINEALNFVPKKKNTTFVVHIKAGI--YKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVA-IVGDHFI 340 (670)
T ss_pred CHHHHHHhccccCCceEEEEEeCCc--eEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEE-EECCCeE
Confidence 46667753 2235555545563 44667775 57889999875443 21 21 122 2789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCC-----------------CCeeEEee
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAA-----------------DGLIDVIH 219 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~-----------------DgliDi~~ 219 (389)
.|||+|++... ...+-|+-+. .+.+.-+.+|.|.... .|.+|..-
T Consensus 341 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 341 AKNIGFENTAG-----------------AIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLF 403 (670)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEe
Confidence 99999998641 1234555554 4788889999998754 45566666
Q ss_pred cCeeEEEeCcEecccc-----eeEEeCCCCcccCCCceEEEEeceEEcCCCCCcC------------CccccceEEEecc
Q 047672 220 ASTAVTISNNCFEQHD-----KVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERM------------PRVRIGYAHVANN 282 (389)
Q Consensus 220 ~s~~VTISnn~f~~H~-----k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~------------Pr~R~G~~Hv~NN 282 (389)
|.-..-+++|.|.-.. +..+--++-. ..+...-+.|+++.+ .....-. |.-.|..+-+.|.
T Consensus 404 G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i-~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t 481 (670)
T PLN02217 404 GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTI-VGEPDYLAVKETSKAYLGRPWKEYSRTIIMNT 481 (670)
T ss_pred cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEE-ecCccccccccccceeeccCCCCCceEEEEec
Confidence 6667778888886321 1222111110 011234578888888 4432111 3333566777777
Q ss_pred eeeC
Q 047672 283 RYED 286 (389)
Q Consensus 283 ~y~n 286 (389)
++.+
T Consensus 482 ~l~~ 485 (670)
T PLN02217 482 FIPD 485 (670)
T ss_pred ccCC
Confidence 7665
No 49
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.66 E-value=0.38 Score=51.29 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=63.8
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCCc----e------EE-EeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANGP----C------IT-IQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG~----g------i~-i~~a~NVII 158 (389)
|+.+||.+ +..+++++=+.|+ ....|.|. +|+||+|.|...+ |.+.. | -+ ...++++|.
T Consensus 211 TIq~AI~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v~g~gF~A 288 (509)
T PLN02488 211 TVNAAIAAAPEHSRKRFVIYIKTGV--YDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVASNGDGFIG 288 (509)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEEEcCCeEE
Confidence 46667643 2234444445564 44667774 6899999987643 33211 1 01 126899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
+||+|++... | ..+-|+-+. .+...-+.+|.|....|=|.+
T Consensus 289 ~nitf~Ntag--~---------------~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~ 330 (509)
T PLN02488 289 IDMCFRNTAG--P---------------AKGPAVALRVSGDMSVIYRCRIEGYQDALYP 330 (509)
T ss_pred EeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeeccCcceee
Confidence 9999998531 1 234566665 578899999999987776653
No 50
>PLN02671 pectinesterase
Probab=94.65 E-value=0.52 Score=48.31 Aligned_cols=116 Identities=14% Similarity=0.197 Sum_probs=71.7
Q ss_pred hhhhhhhc-----CCCeEEEEeeceEEEecceEEec---CCceEEeeCc---eeEEcC----------C--------ceE
Q 047672 98 TLRYGVIQ-----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGA---KVEIAN----------G--------PCI 148 (389)
Q Consensus 98 tLr~a~~~-----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga---~~~i~g----------G--------~gi 148 (389)
|+.+||.. +++.+|.+ +.|+ ....|.|. +++||.|.|. +..|.. | +-+
T Consensus 73 TIQ~AIdavP~~~~~~~~I~I-k~Gv--Y~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 73 TVQGAVDMVPDYNSQRVKIYI-LPGI--YREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred CHHHHHHhchhcCCccEEEEE-eCce--EEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 46666643 23344444 4553 45677773 7899999863 333431 1 011
Q ss_pred EEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEe
Q 047672 149 TIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTIS 227 (389)
Q Consensus 149 ~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTIS 227 (389)
. ..+++++.+||+|++..+..+| ...+-|+.+. .+.++-+.+|.|....|=|++- ...--+.
T Consensus 150 ~-v~a~~F~a~nitfeNt~~~~~g-------------~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~---~gR~yf~ 212 (359)
T PLN02671 150 T-IESDYFCATGITFENTVVAEPG-------------GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDE---TGSHYFY 212 (359)
T ss_pred E-EECCceEEEeeEEEcCCCCCCC-------------CCCccEEEEEEcCccEEEEcceEeccccccEeC---CCcEEEE
Confidence 1 3779999999999986422111 1233444443 4789999999999999998863 2345667
Q ss_pred CcEecc
Q 047672 228 NNCFEQ 233 (389)
Q Consensus 228 nn~f~~ 233 (389)
+|+|..
T Consensus 213 ~CyIeG 218 (359)
T PLN02671 213 QCYIQG 218 (359)
T ss_pred ecEEEE
Confidence 777764
No 51
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=94.46 E-value=0.42 Score=51.41 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cce-----EEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GPC-----ITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~g-----i~i~~a~NVII 158 (389)
|+.+||.. +..+++++=+.|+ ....|.|. +|+||+|.|...+ |.+ |.+ .....+++++.
T Consensus 246 TIq~Av~a~p~~~~~r~vI~Vk~Gv--Y~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v~~~~F~a 323 (537)
T PLN02506 246 TITEAINEAPNHSNRRYIIYVKKGV--YKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGRGFIA 323 (537)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCe--eeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEEEcCCeEE
Confidence 46666643 3345555555664 34556664 7899999886543 322 111 11237899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
|||.|++... + .++-|+-+. .+.++-+.+|.|....|=|.+- +..--..+|+|.
T Consensus 324 ~nit~~Ntag--~---------------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~---~~rqyy~~C~I~ 378 (537)
T PLN02506 324 RDITFRNTAG--P---------------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH---SLRQFYRECEIY 378 (537)
T ss_pred EeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEcceeecccccceec---CCceEEEeeEEe
Confidence 9999998631 1 123444443 4789999999999988877642 223455566665
No 52
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=94.40 E-value=0.49 Score=50.76 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=69.6
Q ss_pred hhhhhhhc-----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeEE-cC------Cce-----EEEeccccEE
Q 047672 98 TLRYGVIQ-----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVEI-AN------GPC-----ITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~-----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~i-~g------G~g-----i~i~~a~NVI 157 (389)
|+.+||.. ...+++++=+.|+ ....|.|. +|+||+|.|...++ .+ |.+ -....++|++
T Consensus 239 TIq~AI~a~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~v~~~~F~ 316 (529)
T PLN02170 239 TIGEALLSTSLESGGGRTVIYLKAGT--YHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVAAMGDGFI 316 (529)
T ss_pred hHHHHHHhcccccCCceEEEEEeCCe--eEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEEEEcCCeE
Confidence 56677752 2235555555665 44667773 79999999876433 22 111 1123789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
.|||.|++..+ + ..+-|+-+. .++++-+.+|.|....|=|.+- +..--..+|+|.
T Consensus 317 a~nitf~Ntag--~---------------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~---~~Rqyy~~C~I~ 372 (529)
T PLN02170 317 ARDITFVNSAG--P---------------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYTH---SKRQFYRETDIT 372 (529)
T ss_pred EEeeEEEecCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCCcceeC---CCCEEEEeeEEc
Confidence 99999998631 1 123455444 4788899999999887777642 223344555554
No 53
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.31 E-value=0.51 Score=51.42 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=69.4
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVI 157 (389)
|+.+||.. ...+++++=+.|+ ....|.|. +|+||.|.|...+ |.+ |. -+. ..+++++
T Consensus 299 TIq~Ai~a~P~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~-v~~~~F~ 375 (596)
T PLN02745 299 TISDALAAMPAKYEGRYVIYVKQGI--YDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFV-ALGEGFM 375 (596)
T ss_pred cHHHHHHhccccCCceEEEEEeCCe--eEEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEE-EEcCCEE
Confidence 56667743 2234555545564 34567774 5899999987543 322 11 111 2789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
.+||+|++..+ ...+-|+-+. .+.++-+.+|.|....|=|.+- +..--+.+|+|.
T Consensus 376 a~nitf~Ntag-----------------~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 431 (596)
T PLN02745 376 AKSMGFRNTAG-----------------PEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQ---THRQFYRSCVIT 431 (596)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEeeEEeecccccccC---CCcEEEEeeEEE
Confidence 99999998531 1123455554 4788999999999887777642 223444555554
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.29 E-value=0.45 Score=47.41 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=64.1
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCC------------ceEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANG------------PCITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG------------~gi~i~~a~NVI 157 (389)
|+.+||.. +..+++++=..|+ ....|.|. +++||+|.+...+ |.+. .-+.+ .++|++
T Consensus 14 TIq~Aida~p~~~~~~~~I~I~~G~--Y~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~ 90 (298)
T PF01095_consen 14 TIQAAIDAAPDNNTSRYTIFIKPGT--YREKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFT 90 (298)
T ss_dssp SHHHHHHHS-SSSSS-EEEEE-SEE--EE--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-E
T ss_pred CHHHHHHhchhcCCceEEEEEeCee--EccccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-ccccee
Confidence 46667653 3335555555664 44677776 5899999987543 3221 11333 689999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
++||+|++.... .....-||.+ .++++.+.+|.|....|=|..- ....-+.+|+|+.
T Consensus 91 ~~nit~~Nt~g~---------------~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG 147 (298)
T PF01095_consen 91 AENITFENTAGP---------------SGGQAVALRV-SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG 147 (298)
T ss_dssp EEEEEEEEHCSG---------------SG----SEEE-T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE
T ss_pred eeeeEEecCCCC---------------cccceeeeee-cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEe
Confidence 999999986310 0123356666 4688999999999999988642 3466778888874
No 55
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=94.16 E-value=2.9 Score=45.42 Aligned_cols=104 Identities=14% Similarity=0.219 Sum_probs=66.5
Q ss_pred eEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEEEEccEEEeccCCCCC
Q 047672 109 LWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVIIHGISIHDCKPGKSG 172 (389)
Q Consensus 109 ~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVIIrnL~i~~~~~~~~g 172 (389)
+++|+=+.|+ ....|.|. +|+||+|.|...+ |.+ |. -+. ..+++++.|||+|++..+
T Consensus 282 ~~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~-v~~~~F~a~nitf~Ntag---- 354 (566)
T PLN02713 282 YFVIYVTAGV--YEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFA-VVGQNFVAVNITFRNTAG---- 354 (566)
T ss_pred eEEEEEcCcE--EEEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEE-EECCCeEEEeeEEEeCCC----
Confidence 4555555664 34667774 6889999986543 322 21 122 377999999999998631
Q ss_pred ceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCC-----------------eeEEeecCeeEEEeCcEec
Q 047672 173 QVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADG-----------------LIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 173 ~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~Dg-----------------liDi~~~s~~VTISnn~f~ 232 (389)
...+-|+-+. .+...-+.+|.|....|= .+|..-|.-.+-+++|.|.
T Consensus 355 -------------~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 419 (566)
T PLN02713 355 -------------PAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLY 419 (566)
T ss_pred -------------CCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceEEEeccEEE
Confidence 1123455554 477888999988876554 4455556666677777775
No 56
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=94.15 E-value=0.6 Score=50.61 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=63.4
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCCc----e-E-E------EeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANGP----C-I-T------IQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG~----g-i-~------i~~a~NVI 157 (389)
|+.+||.. +..+++++=+.|+ ....|.|. +|+||.|.|..-+ |.+.. | + + ...+++++
T Consensus 273 TIq~Av~a~p~~~~~r~vI~Ik~Gv--Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v~~~~F~ 350 (572)
T PLN02990 273 TINEALNAVPKANQKPFVIYIKQGV--YNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAINGDHFT 350 (572)
T ss_pred CHHHHHhhCcccCCceEEEEEeCce--eEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEEEcCCEE
Confidence 56677743 2234555545664 44667774 6899999986533 43110 1 1 1 12789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
.|||+|++..+ ...+-|+-+. .+...-+.+|.|....|=|.+
T Consensus 351 a~nitf~Ntag-----------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 393 (572)
T PLN02990 351 AKNIGFENTAG-----------------PEGHQAVALRVSADYAVFYNCQIDGYQDTLYV 393 (572)
T ss_pred EEeeEEEeCCC-----------------CCCCceEEEEEcCCcEEEEeeeEecccchhcc
Confidence 99999998641 1234566665 578889999999987666653
No 57
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=94.11 E-value=0.6 Score=50.14 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=68.9
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVI 157 (389)
|+.+||.+ +..+++++=+.|+- ...|.|. +|+||.|.|...+ |.+ |. -+. ..+++++
T Consensus 232 TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~a~~F~ 308 (530)
T PLN02933 232 TINEAVSAAPNSSETRFIIYIKGGEY--FENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG-VKGKGFI 308 (530)
T ss_pred CHHHHHHhchhcCCCcEEEEEcCceE--EEEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE-EECCCEE
Confidence 46667643 22344444445643 3567774 6889999886533 321 11 122 2789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
.|||+|++-.+ ...+-|+-+. .+.++-+.+|.|....|=|.+-. ..--..+|+|.
T Consensus 309 a~nitf~Ntag-----------------~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~---~Rqyy~~C~Ie 364 (530)
T PLN02933 309 AKDISFVNYAG-----------------PAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS---AKQFYRECDIY 364 (530)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEEcCCcEEEEEeEEEecccccccCC---CceEEEeeEEe
Confidence 99999998531 1124555554 47899999999999887776432 23445555555
No 58
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.02 E-value=0.58 Score=50.53 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=63.5
Q ss_pred hhhhhhhc-----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCC-----ceE-------EEeccccE
Q 047672 98 TLRYGVIQ-----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANG-----PCI-------TIQGVSHV 156 (389)
Q Consensus 98 tLr~a~~~-----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG-----~gi-------~i~~a~NV 156 (389)
|+.+||.. .+.++||+=+.|+- ...|.|. .|+||+|.|...+ |.+. .|+ ....++++
T Consensus 255 TIq~Av~a~p~~~~~~r~vI~vk~GvY--~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v~~~~f 332 (553)
T PLN02708 255 TVQEAVNAAPDNNGDRKFVIRIKEGVY--EETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGF 332 (553)
T ss_pred CHHHHHHhhhhccCCccEEEEEeCceE--EeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEEEcCCe
Confidence 46666643 13355555556643 4566663 6899999986543 3221 111 11378999
Q ss_pred EEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 157 IIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 157 IIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
+.+||+|++.. + ...+-|+-+. .+.++-+.+|.|....|=|.+
T Consensus 333 ~a~~it~~Nta--g---------------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 333 MARDLTIQNTA--G---------------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred EEEeeEEEcCC--C---------------CCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 99999999853 1 1224566665 578999999999987766653
No 59
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=93.89 E-value=0.58 Score=50.87 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=63.7
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecc-eEEec---CCceEEeeCceeE-EcCCce-----------EEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKN-ELIMN---SFKTIDGRGAKVE-IANGPC-----------ITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~-~L~I~---snkTI~G~ga~~~-i~gG~g-----------i~i~~a~NVI 157 (389)
|+.+||.. +..++|++=+.|+-+ . .|.|. +|+||+|.|...+ |.++.. -....+++++
T Consensus 286 TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v~~~~F~ 363 (587)
T PLN02484 286 TISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAATGAGFI 363 (587)
T ss_pred cHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEEEcCCEE
Confidence 46667743 333566655666543 4 37774 6899999987543 433211 1113789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
.|||+|++..+ + ..+-|+-+. .+.+.-+.+|.|....|=|.+
T Consensus 364 a~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~ 406 (587)
T PLN02484 364 ARDMTFENWAG--P---------------AKHQAVALRVGADHAVVYRCNIIGYQDTLYV 406 (587)
T ss_pred EEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEeeeEeccCccccc
Confidence 99999998531 1 123455554 478888999999987776654
No 60
>PLN02916 pectinesterase family protein
Probab=93.88 E-value=0.67 Score=49.44 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=69.7
Q ss_pred hhhhhhhc-------CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cce-----EEEecccc
Q 047672 98 TLRYGVIQ-------TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GPC-----ITIQGVSH 155 (389)
Q Consensus 98 tLr~a~~~-------~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~g-----i~i~~a~N 155 (389)
|+.+|+.. +..+++++=+.|+ ....|.|. +|+||.|.|...+ |.+ |.. -....+++
T Consensus 201 TIq~AI~a~P~~~~~~~~r~vI~Ik~Gv--Y~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~~~~ 278 (502)
T PLN02916 201 TINQALAALSRMGKSRTNRVIIYVKAGV--YNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVSGDG 278 (502)
T ss_pred CHHHHHHhcccccCCCCceEEEEEeCce--eeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEECCC
Confidence 46666633 2335555555664 34667774 6889999987543 322 110 11237899
Q ss_pred EEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 156 VIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 156 VIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
++.|||+|++..+ + ..+-|+-+. .+.+.-+.+|.|....|=|.+-. ..--..+|+|.
T Consensus 279 F~A~nitf~Ntag--~---------------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~---~Rqyy~~C~I~ 336 (502)
T PLN02916 279 FWARDITFENTAG--P---------------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS---LRQFYRDCHIY 336 (502)
T ss_pred EEEEeeEEEeCCC--C---------------CCCceEEEEEcCCcEEEEeeeEeccCceeEeCC---CCEEEEecEEe
Confidence 9999999998641 1 123444444 47888899999999888776532 23445566655
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=93.74 E-value=0.86 Score=49.09 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred hhhhhhhc------CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcCC------ce-----EEEeccccE
Q 047672 98 TLRYGVIQ------TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IANG------PC-----ITIQGVSHV 156 (389)
Q Consensus 98 tLr~a~~~------~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~gG------~g-----i~i~~a~NV 156 (389)
|+.+||.. +..+++++=+.|+ ....|.|. +|+|+.|.|...+ |.++ .+ -....++++
T Consensus 237 TIq~Ai~a~p~~~~~~~r~vI~Ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v~~~~F 314 (539)
T PLN02995 237 TVQAAIDVAGRRKVTSGRFVIYVKRGI--YQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGIEGLHF 314 (539)
T ss_pred CHHHHHHhcccccCCCceEEEEEeCCE--eEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEEECCCe
Confidence 56677743 1224555445564 44567774 6999999987543 4321 11 011378999
Q ss_pred EEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 157 IIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 157 IIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
+.|||+|++..+ ...+-|+-+. .+.+..+.+|.|....|=|.+- +..--..+|+|+
T Consensus 315 ~a~nitf~Ntag-----------------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~---~~Rqyy~~C~I~ 371 (539)
T PLN02995 315 IAKGITFRNTAG-----------------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH---SQRQFYRECYIY 371 (539)
T ss_pred EEEeeEEEeCCC-----------------CCCCceEEEEEcCCceeEEcceEecccchhccC---CCceEEEeeEEe
Confidence 999999998531 1234566664 4789999999999988887653 223455666665
No 62
>PLN02314 pectinesterase
Probab=93.59 E-value=0.65 Score=50.52 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=63.6
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVI 157 (389)
|+.+||.. +..++|++=+.|+ ....|.|. .|+|+.|.|..-+ |.+ |. -+. ..+++++
T Consensus 292 TI~~Av~a~p~~~~~r~vI~ik~G~--Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~-v~~~~F~ 368 (586)
T PLN02314 292 TINEAVASIPKKSKSRFVIYVKEGT--YVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA-AAGKGFI 368 (586)
T ss_pred CHHHHHhhccccCCceEEEEEcCce--EEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE-EEcCCeE
Confidence 56667743 3335566556664 34566664 6889999986543 322 11 112 3789999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
.|||+|++..+ ....-|+-+. ++...-+.+|.|....|=|.+
T Consensus 369 a~~itf~Ntag-----------------~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~ 411 (586)
T PLN02314 369 AKDMGFINTAG-----------------AAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYA 411 (586)
T ss_pred EEeeEEEECCC-----------------CCCCceEEEEecCCcEEEEeeEEEeccchhee
Confidence 99999998631 1223455554 578888999999987776653
No 63
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=93.57 E-value=0.68 Score=50.35 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=70.8
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cce-----EEEeccccEEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GPC-----ITIQGVSHVII 158 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~g-----i~i~~a~NVII 158 (389)
|+.+|+.. +..++|++=+.|+ ....|.|. .|+||+|.|...+ |.+ |.. .....+++++.
T Consensus 289 TI~~Av~a~p~~~~~r~vI~ik~Gv--Y~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v~~~~F~a 366 (587)
T PLN02313 289 TVAAAVAAAPEKSNKRFVIHIKAGV--YRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLA 366 (587)
T ss_pred cHHHHHHhccccCCceEEEEEeCce--eEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEEECCCeEE
Confidence 46667643 2335555555664 34567774 6889999987543 322 110 11126899999
Q ss_pred EccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCe-----------------eEEeec
Q 047672 159 HGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGL-----------------IDVIHA 220 (389)
Q Consensus 159 rnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~Dgl-----------------iDi~~~ 220 (389)
|||.|++... + ...-|+-+. .+.+.-+.+|.|....|=| +|..-|
T Consensus 367 ~~itf~Ntag--~---------------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG 429 (587)
T PLN02313 367 RDITFQNTAG--P---------------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFG 429 (587)
T ss_pred EeeEEEeCCC--C---------------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceecc
Confidence 9999998641 1 123455554 4788889999998765544 455555
Q ss_pred CeeEEEeCcEec
Q 047672 221 STAVTISNNCFE 232 (389)
Q Consensus 221 s~~VTISnn~f~ 232 (389)
.-.+-+++|.|+
T Consensus 430 ~a~avfq~c~i~ 441 (587)
T PLN02313 430 NAAAVLQDCDIN 441 (587)
T ss_pred ceeEEEEccEEE
Confidence 555556666665
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=93.40 E-value=0.77 Score=49.76 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=62.0
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-EcC------Cc------eEEEeccccEE
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IAN------GP------CITIQGVSHVI 157 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~g------G~------gi~i~~a~NVI 157 (389)
|..+||.. +..++|++=+.|+ ....|.|. .|+||+|.|..-+ |.+ |. -+. ..+++++
T Consensus 272 tI~~Av~a~p~~~~~~~vI~ik~Gv--Y~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~-v~~~~f~ 348 (565)
T PLN02468 272 TISEALKDVPEKSEKRTIIYVKKGV--YFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFA-VFGKGFM 348 (565)
T ss_pred CHHHHHHhchhcCCCcEEEEEeCCc--eEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeee-EECCCeE
Confidence 45666643 2234455445664 34567774 5789999987543 321 10 111 2679999
Q ss_pred EEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 158 IHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 158 IrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
.|||.|++... ....-|+-+. .+.++-+.+|.|....|=|.+
T Consensus 349 a~~itf~Ntag-----------------~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 349 ARDMGFRNTAG-----------------PIKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred EEEEEEEeCCC-----------------CCCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 99999998631 1223555554 578899999999987766653
No 65
>PLN02497 probable pectinesterase
Probab=93.36 E-value=1.4 Score=44.76 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=72.9
Q ss_pred hhhhhhhc----CCCeEEEEeeceEEEecceEEec---CCceEEeeCceeE-Ec--------CCceEEEeccccEEEEcc
Q 047672 98 TLRYGVIQ----TKPLWIIFAKDMVIRLKNELIMN---SFKTIDGRGAKVE-IA--------NGPCITIQGVSHVIIHGI 161 (389)
Q Consensus 98 tLr~a~~~----~~p~~Ivf~~~~~I~l~~~L~I~---snkTI~G~ga~~~-i~--------gG~gi~i~~a~NVIIrnL 161 (389)
|+.+|+.. +..+++++=+.| .....|.|. +++||.|+|...+ |. +..-+. ..+++++.+||
T Consensus 46 TIq~AIdavP~~~~~~~~I~Ik~G--~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~-v~a~~f~a~nl 122 (331)
T PLN02497 46 TIQSAIDSVPSNNKHWFCINVKAG--LYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFS-TLADNTVVKSI 122 (331)
T ss_pred CHHHHHhhccccCCceEEEEEeCc--EEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEE-EecCCeEEEcc
Confidence 35556543 223444444455 345667773 7899999986532 22 111233 37899999999
Q ss_pred EEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc
Q 047672 162 SIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ 233 (389)
Q Consensus 162 ~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~ 233 (389)
+|++..+.... + ....++-|+.+. .+.++-+.+|.|....|=|.+- ...--..+|++..
T Consensus 123 T~~Nt~~~~~~---------~-~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~IeG 182 (331)
T PLN02497 123 TFANSYNFPSK---------G-NKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQG 182 (331)
T ss_pred EEEeCCCCccc---------c-CCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEEe
Confidence 99986521100 0 001223455554 4788999999999999998753 3345666777763
No 66
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.29 E-value=0.79 Score=42.93 Aligned_cols=116 Identities=19% Similarity=0.126 Sum_probs=71.0
Q ss_pred ceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE------Ee
Q 047672 146 PCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID------VI 218 (389)
Q Consensus 146 ~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD------i~ 218 (389)
=+|.|.+++||+|.|.+|....... ........|.+. ++++|=|-+|-|......++- ..
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~-------------~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~ 142 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFEC-------------NSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNST 142 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-G-------------GGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGG
T ss_pred CeEEEEecccEEEeccEEecccccc-------------ccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccc
Confidence 3688899999999999999862110 001123336665 588888988888875433331 11
Q ss_pred ecCeeEEEeCcEecccc-eeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCcccc-ceEEEeccee
Q 047672 219 HASTAVTISNNCFEQHD-KVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRI-GYAHVANNRY 284 (389)
Q Consensus 219 ~~s~~VTISnn~f~~H~-k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~-G~~Hv~NN~y 284 (389)
.....||+-+|+|.++. +.=++. .-++-+.+|+| .+..+..=.+|. +++-+-||||
T Consensus 143 ~~~~~vT~hhN~f~~~~~R~P~~r---------~G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 143 DRGLRVTFHHNYFANTNSRNPRVR---------FGYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GTTEEEEEES-EEEEEEE-TTEEC---------SCEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred cCCceEEEEeEEECchhhCCCccc---------ccEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 12259999999997532 111221 12688999999 777777666664 4788889987
No 67
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.25 E-value=0.53 Score=49.17 Aligned_cols=103 Identities=25% Similarity=0.318 Sum_probs=45.8
Q ss_pred ceEEEeeeeeecC--CCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCc--CCccc
Q 047672 198 SYVWVDHCYLARA--ADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIER--MPRVR 273 (389)
Q Consensus 198 ~nVWIDHcs~s~~--~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R--~Pr~R 273 (389)
++.-|.|+-|..| .-|+|++| |..-||++|-|.+..-.+-+=|.. .-|+..|+| -+...+ .+-+|
T Consensus 199 s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN~F-iGng~~~~tGGIR 267 (425)
T PF14592_consen 199 SNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGNVF-IGNGVKEGTGGIR 267 (425)
T ss_dssp ---EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-EE-EE-SSSS-B--EE
T ss_pred cceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEeccEE-ecCCCcCCCCceE
Confidence 3444555555543 23344443 444555666665544333332222 457888888 666543 56777
Q ss_pred -cceE-EEecceeeCCcce----------EEeeCC------CceEEeeccEEEcCC
Q 047672 274 -IGYA-HVANNRYEDWKMY----------AIGGSA------NPTIFSEGNYFMASN 311 (389)
Q Consensus 274 -~G~~-Hv~NN~y~n~~~y----------ai~~~~------~~~i~~egN~F~~~~ 311 (389)
+|.- .|+|||+++-..+ ++-.+. -..+++++|-|.+..
T Consensus 268 Ii~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~ 323 (425)
T PF14592_consen 268 IIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK 323 (425)
T ss_dssp E-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred EecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence 4654 5789999885322 111111 125788889988876
No 68
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.91 E-value=3.9 Score=42.87 Aligned_cols=69 Identities=9% Similarity=0.133 Sum_probs=45.6
Q ss_pred ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeEEeec---------C
Q 047672 152 GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLIDVIHA---------S 221 (389)
Q Consensus 152 ~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliDi~~~---------s 221 (389)
.+++++.+||+|++..+... ....+-|+-+. .++++-+.+|.|....|=|.+-..+ .
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~ 270 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQ 270 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeeecccccccccccccc
Confidence 77999999999998652110 01234455554 4789999999999999888762111 1
Q ss_pred eeEEEeCcEecc
Q 047672 222 TAVTISNNCFEQ 233 (389)
Q Consensus 222 ~~VTISnn~f~~ 233 (389)
..--+.+|+|+.
T Consensus 271 gRqYf~~CyIeG 282 (422)
T PRK10531 271 PRTYVKNSYIEG 282 (422)
T ss_pred ccEEEEeCEEee
Confidence 245566677663
No 69
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=87.15 E-value=3.7 Score=44.37 Aligned_cols=136 Identities=15% Similarity=0.251 Sum_probs=83.9
Q ss_pred CCCeEEEEeeceEEEec------ce---EE-ec-CCceEEeeCcee-EEcCCceEEEeccccEEEEccEEEeccCCCCCc
Q 047672 106 TKPLWIIFAKDMVIRLK------NE---LI-MN-SFKTIDGRGAKV-EIANGPCITIQGVSHVIIHGISIHDCKPGKSGQ 173 (389)
Q Consensus 106 ~~p~~Ivf~~~~~I~l~------~~---L~-I~-snkTI~G~ga~~-~i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~ 173 (389)
..|+.+.|.+--.+.+. .+ +. +. +|.||.+..-+. ++.+--||.+...+||.|.+.+|..
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-------- 307 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-------- 307 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec--------
Confidence 46788888764333322 11 11 11 455555542211 0101127999999999999999973
Q ss_pred eecCCCCCCCCCCCCCCeEEee------------CCceEEEeeeeeecCCCCeeEEee---cCeeEEEeCcEecccceeE
Q 047672 174 VRSSPDHVGRRGGSDGDAIDIF------------ASSYVWVDHCYLARAADGLIDVIH---ASTAVTISNNCFEQHDKVM 238 (389)
Q Consensus 174 v~~~~~~~g~~~~~~gDaI~i~------------~s~nVWIDHcs~s~~~DgliDi~~---~s~~VTISnn~f~~H~k~~ 238 (389)
..|+|.++ -+.+|||-||.|+.++-+++.-.+ +..+|++-+|.|.+-+.+.
T Consensus 308 --------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 308 --------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred --------------CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 23444443 157899999999999888876433 4479999999999866665
Q ss_pred EeCCCCcccCCCceEEEEeceEEcCCC
Q 047672 239 LLGHNDQFTADKIMKVTIAFNHFGPGL 265 (389)
Q Consensus 239 LiG~sd~~~~d~~~~VT~hhN~fg~~~ 265 (389)
=|...+... -+..+|+|+-|.- .+.
T Consensus 374 Rikt~~~~g-G~v~nI~~~~~~~-~nv 398 (542)
T COG5434 374 RIKTNDGRG-GGVRNIVFEDNKM-RNV 398 (542)
T ss_pred eeeeecccc-eeEEEEEEecccc-cCc
Confidence 555443221 1124577766665 444
No 70
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=87.01 E-value=4.1 Score=40.97 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=77.7
Q ss_pred CCCeEEeeCCceEEEeeeeeecCC-----CCeeEEeecCeeEEEeCcEecccceeEEeCCCCccc--CCCceEEEEeceE
Q 047672 188 DGDAIDIFASSYVWVDHCYLARAA-----DGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFT--ADKIMKVTIAFNH 260 (389)
Q Consensus 188 ~gDaI~i~~s~nVWIDHcs~s~~~-----DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~--~d~~~~VT~hhN~ 260 (389)
-+-++.|..+.||.|-..+|...+ +-.|.+..++.+|=|-+|-|..|....=--|.|... ....--||+..|+
T Consensus 115 ~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~ 194 (345)
T COG3866 115 VGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK 194 (345)
T ss_pred EeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence 467789989999999999999876 445678778899999999998754431111112111 1122479999999
Q ss_pred EcCCCCCcCCccc--------cc--eEEEecceeeCCcceEEeeCCCceEEeeccEEEcCC
Q 047672 261 FGPGLIERMPRVR--------IG--YAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASN 311 (389)
Q Consensus 261 fg~~~~~R~Pr~R--------~G--~~Hv~NN~y~n~~~yai~~~~~~~i~~egN~F~~~~ 311 (389)
| ++..-- -.+. -| .+-+-+|||.|--+.+=..|- .++-+-+|||+.-+
T Consensus 195 f-hdh~Ks-sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~~~ 252 (345)
T COG3866 195 F-HDHDKS-SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEGNP 252 (345)
T ss_pred e-ecCCee-eeeccCCcccccCCceeEEEeccccccccccCCceEe-eEEEEeccccccCc
Confidence 9 543211 1111 12 366678999986443332332 37888999999443
No 71
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=86.58 E-value=4.3 Score=38.07 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=60.0
Q ss_pred eeEEEeCcEecccc--eeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccc--cc-------eEEEecceeeCCcce
Q 047672 222 TAVTISNNCFEQHD--KVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVR--IG-------YAHVANNRYEDWKMY 290 (389)
Q Consensus 222 ~~VTISnn~f~~H~--k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R--~G-------~~Hv~NN~y~n~~~y 290 (389)
++|-|=||.+++-. -.-|+|...++..+....|-+|||.| -.+ .++|... .| ..-+.||+|+.....
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~f-Y~t-Gtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIF-YDT-GTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEe-ecC-CcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 46788889998754 45688987766666666899999999 444 3456554 33 247889999985433
Q ss_pred EEe----------eCCCceEEeeccEEEcCC
Q 047672 291 AIG----------GSANPTIFSEGNYFMASN 311 (389)
Q Consensus 291 ai~----------~~~~~~i~~egN~F~~~~ 311 (389)
||. ...+-+..+.+|.+.+..
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 332 113446778888888765
No 72
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=81.87 E-value=7.7 Score=38.32 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=63.3
Q ss_pred ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEe
Q 047672 152 GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCF 231 (389)
Q Consensus 152 ~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f 231 (389)
+++|..|.|.+|.++. . .+..++||-+++|.|.|-+ -.++ ++++.|.+|+|
T Consensus 17 ~~~d~~l~~~~f~dGE----------------------S--~LKes~nI~~~~~~F~~KY----P~Wh-~~~~~i~~~~f 67 (277)
T PF12541_consen 17 GSHDLRLENCTFADGE----------------------S--PLKESRNIELKNCIFKWKY----PLWH-SDNIKIENCYF 67 (277)
T ss_pred ccCCCEEEeeEEeCCC----------------------c--ccccccceEEECCEEeeEC----ceEE-ECCeEEEeeEE
Confidence 5688999999998643 1 2346899999999998754 3556 77889999999
Q ss_pred cccceeEEeCCCCcccC------C---Cc-eEEEEeceEEcCCCCCcCCccc
Q 047672 232 EQHDKVMLLGHNDQFTA------D---KI-MKVTIAFNHFGPGLIERMPRVR 273 (389)
Q Consensus 232 ~~H~k~~LiG~sd~~~~------d---~~-~~VT~hhN~fg~~~~~R~Pr~R 273 (389)
.+-.+..||-+.+-... - |. ..|++-+-.| .+..+-+..++
T Consensus 68 ~~~aRa~iWYs~~i~m~d~~i~apK~fR~~~~i~L~nv~~-~~A~Et~W~c~ 118 (277)
T PF12541_consen 68 TEMARAAIWYSNNITMKDSVIQAPKMFRECSNITLENVDI-PDADETLWNCR 118 (277)
T ss_pred eecceeeeeEeCCEEEEeeeccCchHhhcccCcEEEeeEe-CCCcccCEEeC
Confidence 98777777776552111 0 11 3567777777 66666666665
No 73
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=76.81 E-value=23 Score=34.60 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=55.6
Q ss_pred EEecCCceEEeeCceeE-EcCCceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeC------C
Q 047672 125 LIMNSFKTIDGRGAKVE-IANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFA------S 197 (389)
Q Consensus 125 L~I~snkTI~G~ga~~~-i~gG~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~------s 197 (389)
|...++.+|.|..-... +..|.|+.|..+ +..|+|-+|+++. .++|.+.+ .
T Consensus 93 I~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i 150 (246)
T PF07602_consen 93 IILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGI 150 (246)
T ss_pred EEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcc
Confidence 33456777777532111 223458999665 9999999999753 34555543 3
Q ss_pred ceEEEeeeeeecCCCCeeEEeecC--eeEEEeCcEecccceeE
Q 047672 198 SYVWVDHCYLARAADGLIDVIHAS--TAVTISNNCFEQHDKVM 238 (389)
Q Consensus 198 ~nVWIDHcs~s~~~DgliDi~~~s--~~VTISnn~f~~H~k~~ 238 (389)
.++.|.-+++.....|. ++...+ ..-+|.||+|++-..++
T Consensus 151 ~~~vI~GN~~~~~~~Gi-~i~~~~~~~~n~I~NN~I~~N~~Gi 192 (246)
T PF07602_consen 151 NGNVISGNSIYFNKTGI-SISDNAAPVENKIENNIIENNNIGI 192 (246)
T ss_pred cceEeecceEEecCcCe-EEEcccCCccceeeccEEEeCCcCe
Confidence 45567777877766666 332212 22478999999755444
No 74
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=67.25 E-value=1e+02 Score=29.08 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=45.2
Q ss_pred CCceEEEeeeeeecC-CCCeeEEe-----ecCeeEEEeCcEecccce--eEEeCCCCcccC-CCceEEEEeceEEcCCCC
Q 047672 196 ASSYVWVDHCYLARA-ADGLIDVI-----HASTAVTISNNCFEQHDK--VMLLGHNDQFTA-DKIMKVTIAFNHFGPGLI 266 (389)
Q Consensus 196 ~s~nVWIDHcs~s~~-~DgliDi~-----~~s~~VTISnn~f~~H~k--~~LiG~sd~~~~-d~~~~VT~hhN~fg~~~~ 266 (389)
.++||+|.|+.|..+ ....++.. .|-.+..|-||.|+.-.. +.-+........ ......++.+|.+ .++.
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT~ 110 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNTR 110 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eeee
Confidence 467999999999985 23333322 234578999999996333 222222221222 2346678899999 8887
Q ss_pred Cc
Q 047672 267 ER 268 (389)
Q Consensus 267 ~R 268 (389)
+|
T Consensus 111 ~r 112 (198)
T PF08480_consen 111 KR 112 (198)
T ss_pred ec
Confidence 66
No 75
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=66.25 E-value=13 Score=25.79 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=26.9
Q ss_pred eEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 191 AIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 191 aI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
||.+..+++..|..|.++...||. .+.. +.+-+|..|.|.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI-~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGI-YLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEE-EEEe-CCCCEeECCEEE
Confidence 466677777778888888777754 4444 566666776665
No 76
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=48.89 E-value=34 Score=34.57 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=32.9
Q ss_pred eccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeec
Q 047672 151 QGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLAR 209 (389)
Q Consensus 151 ~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~ 209 (389)
.+.++.||||++-+++.|.++ ...+-|.-.+.|+++.|..||..++-+
T Consensus 265 engkhfvirnvkaknitpdfs-----------kkagidnatvaiygcdnfvidni~mvn 312 (464)
T PRK10123 265 ENGKHFVIRNIKAKNITPDFS-----------KKAGIDNATVAIYGCDNFVIDNIEMIN 312 (464)
T ss_pred cCCcEEEEEeeeccccCCCch-----------hhcCCCcceEEEEcccceEEecccccc
Confidence 366778888888887765432 223445566788899999998775544
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=48.82 E-value=52 Score=31.57 Aligned_cols=44 Identities=23% Similarity=0.046 Sum_probs=26.8
Q ss_pred CCCeEEeeCCc-eEEEeeeeeecCCCCeeEEeecCeeEEEeCcEec
Q 047672 188 DGDAIDIFASS-YVWVDHCYLARAADGLIDVIHASTAVTISNNCFE 232 (389)
Q Consensus 188 ~gDaI~i~~s~-nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~ 232 (389)
..||+++.+.. .+.|.-..+....|-.|-... ...++|++-+..
T Consensus 95 cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng-~Gtv~I~nF~a~ 139 (215)
T PF03211_consen 95 CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG-GGTVTIKNFYAE 139 (215)
T ss_dssp SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S-SEEEEEEEEEEE
T ss_pred ceeeeEEcCCCceEEEeCCcccCCCccEEEecC-ceeEEEEeEEEc
Confidence 45777776655 677777777777776665443 445666663333
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=48.47 E-value=38 Score=23.35 Aligned_cols=42 Identities=12% Similarity=0.022 Sum_probs=32.7
Q ss_pred eEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeecC
Q 047672 147 CITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARA 210 (389)
Q Consensus 147 gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~~ 210 (389)
||.+..+++..|++=+|++. .|||.+..+++--|..+.++..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----------------------~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----------------------SYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----------------------CCEEEEEeCCCCEeECCEEEcC
Confidence 47777777777888888753 4699999988888888888753
No 79
>PF07822 Toxin_13: Neurotoxin B-IV-like protein; InterPro: IPR012497 The members of this family resemble neurotoxin B-IV (P01525 from SWISSPROT), which is a crustacean-selective neurotoxin produced by the marine worm Cerebratulus lacteus. This highly cationic peptide is approximately 55 residues and is arranged to form two antiparallel helices connected by a well-defined loop in a hairpin structure. The branches of the hairpin are linked by four disulphide bonds. Three residues identified as being important for activity, namely Arg-17, -25 and -34, are found on the same face of the molecule, while another residue important for activity, Trp30, is on the opposite side. The protein's mode of action is not entirely understood, but it may act on voltage-gated sodium channels, possibly by binding to an as yet uncharacterised site on these proteins. Its site of interaction may also be less specific, for example it may interact with negatively charged membrane lipids []. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1VIB_A.
Probab=48.45 E-value=6.6 Score=28.84 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=13.7
Q ss_pred ccchhccCcchhcccccccC
Q 047672 45 IDSCWRAKSNWAVNRKALTD 64 (389)
Q Consensus 45 id~cwr~~~~w~~~r~~la~ 64 (389)
-|+|.||+-.|+-.|-.-|.
T Consensus 20 yd~ci~cqgkwagkrgkcaa 39 (55)
T PF07822_consen 20 YDDCIRCQGKWAGKRGKCAA 39 (55)
T ss_dssp HHHH--TTGGGTT-HHHHHH
T ss_pred hhHHheecceeccccCcchh
Confidence 69999999999998865443
No 80
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=47.04 E-value=1.7e+02 Score=29.12 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=23.4
Q ss_pred EEEEeceEEcCCCCCcCCccccceEEEecceeeCC
Q 047672 253 KVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDW 287 (389)
Q Consensus 253 ~VT~hhN~fg~~~~~R~Pr~R~G~~Hv~NN~y~n~ 287 (389)
++|+.++.. .+. .|.|---.+.+-|.-+.+-
T Consensus 195 NltliNC~I-~g~---QpLCY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 195 NLTLINCTI-EGT---QPLCYCDNLVLENCTMIDT 225 (277)
T ss_pred CeEEEEeEE-ecc---CccEeecceEEeCcEeecc
Confidence 689999888 444 6888766788888887753
No 81
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=42.23 E-value=75 Score=34.60 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=38.7
Q ss_pred CCCCCeEEeeCCceEEEeeeeeecCCCCeeEEeecCeeEEEeCcEecc-cc-eeEEeCCCCcccCC-CceEEEEeceEEc
Q 047672 186 GSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQ-HD-KVMLLGHNDQFTAD-KIMKVTIAFNHFG 262 (389)
Q Consensus 186 ~~~gDaI~i~~s~nVWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~-H~-k~~LiG~sd~~~~d-~~~~VT~hhN~fg 262 (389)
....|||.+...+.| ++| |.++.|-.|-+.+ ++++|+++-+-. |+ -++-+|-....+.+ ..-++.+.||.+
T Consensus 370 ~~qtDGi~ly~nS~i--~dc-F~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~- 443 (582)
T PF03718_consen 370 YFQTDGIELYPNSTI--RDC-FIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRW- 443 (582)
T ss_dssp CTT----B--TT-EE--EEE-EEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE----
T ss_pred EeccCCccccCCCee--eee-EEEecCchhheee--cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeee-
Confidence 467899999877766 555 5555555556665 689999998874 33 45566766543321 123677777766
Q ss_pred CCCCCcCCccccc
Q 047672 263 PGLIERMPRVRIG 275 (389)
Q Consensus 263 ~~~~~R~Pr~R~G 275 (389)
.....+-|.+=+|
T Consensus 444 ~~~~~~~n~~I~~ 456 (582)
T PF03718_consen 444 IWHNNYVNTAILG 456 (582)
T ss_dssp SSGGCTTT-ECEE
T ss_pred ecccCCCCceeEe
Confidence 5555555555443
No 82
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=28.31 E-value=3.7e+02 Score=23.66 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=45.3
Q ss_pred cccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEeeCCceEEEeeeeeec---CCCCeeEEeecCeeE-EEeC
Q 047672 153 VSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLAR---AADGLIDVIHASTAV-TISN 228 (389)
Q Consensus 153 a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~~s~nVWIDHcs~s~---~~DgliDi~~~s~~V-TISn 228 (389)
..++-|||..+..++-..++. ..+.. ...+-|.+.|......+|-=|.=++ +..|.||+..+...| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~~---kd~ei---s~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDGN---KDDEI---SPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCCC---cCCEe---CccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 347888999988765321110 00011 1344577888777777888887755 688999999877766 6655
Q ss_pred c
Q 047672 229 N 229 (389)
Q Consensus 229 n 229 (389)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 4
No 83
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=23.82 E-value=1.7e+02 Score=31.60 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=34.7
Q ss_pred ccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEee-CCceEEEeeeeeecCCCCeeE
Q 047672 152 GVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIF-ASSYVWVDHCYLARAADGLID 216 (389)
Q Consensus 152 ~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i~-~s~nVWIDHcs~s~~~DgliD 216 (389)
.+++++.|||+|++... + .+.-|+-+. .+.++-+.+|.|....|=|.+
T Consensus 268 ~~~~F~a~nitf~Ntag--~---------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 268 TGDGFIARDIGFKNAAG--P---------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred ECCCeEEEeeEEEECCC--C---------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 78999999999998631 1 122344443 478888999999987777664
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=23.74 E-value=1.1e+02 Score=17.52 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=8.6
Q ss_pred ceEEEeeeeeecCCC
Q 047672 198 SYVWVDHCYLARAAD 212 (389)
Q Consensus 198 ~nVWIDHcs~s~~~D 212 (389)
.+++|.+|.|.....
T Consensus 2 ~~~~i~~n~i~~~~~ 16 (26)
T smart00710 2 SNVTIENNTIRNNGG 16 (26)
T ss_pred CCEEEECCEEEeCCC
Confidence 355666666665544
Done!