Query 047673
Match_columns 437
No_of_seqs 457 out of 2653
Neff 11.1
Searched_HMMs 29240
Date Tue Mar 26 00:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.1E-45 2.4E-49 349.9 31.4 400 3-417 8-483 (491)
2 3o7q_A L-fucose-proton symport 100.0 9.3E-31 3.2E-35 247.8 27.8 360 4-392 23-427 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.2E-31 4E-36 254.9 15.4 365 3-397 24-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.2E-27 1.1E-31 226.8 19.8 342 55-401 47-476 (491)
5 2gfp_A EMRD, multidrug resista 99.9 2.4E-28 8.1E-33 226.3 8.1 340 10-385 3-364 (375)
6 2cfq_A Lactose permease; trans 99.9 1.6E-24 5.6E-29 203.2 9.7 337 58-400 39-403 (417)
7 2xut_A Proton/peptide symporte 99.9 4.8E-23 1.6E-27 199.4 13.6 127 59-188 51-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.2 4.8E-11 1.6E-15 112.7 10.0 146 255-401 59-211 (451)
9 2gfp_A EMRD, multidrug resista 99.0 3E-10 1E-14 104.5 7.8 145 256-401 33-179 (375)
10 2cfq_A Lactose permease; trans 99.0 8E-10 2.7E-14 103.2 9.2 133 60-195 257-404 (417)
11 3o7q_A L-fucose-proton symport 99.0 1.1E-09 3.9E-14 102.8 9.6 115 256-371 59-177 (438)
12 4aps_A DI-OR tripeptide H+ sym 99.0 5.1E-10 1.8E-14 106.9 6.2 135 256-391 52-190 (491)
13 2xut_A Proton/peptide symporte 98.9 5.4E-09 1.8E-13 100.7 12.5 137 256-393 52-194 (524)
14 4gc0_A D-xylose-proton symport 98.8 1.3E-08 4.4E-13 97.2 11.0 139 262-400 58-223 (491)
15 2g9p_A Antimicrobial peptide l 63.9 3.4 0.00012 19.3 1.3 14 81-94 2-15 (26)
16 4dve_A Biotin transporter BIOY 25.8 1.1E+02 0.0037 24.4 5.0 25 68-92 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.1e-45 Score=349.90 Aligned_cols=400 Identities=23% Similarity=0.354 Sum_probs=307.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
++.+.+++++++|.+.+|||.++++.+. |.+.++|..+.. .+.+.+..+.|++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999999999999765 788887743221 1114467889999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHh------------------hccccceeeeee------------cchhhhhhcc
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGG------------------AALDIYMLILGL------------NAPISLRNGT 132 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r------------~~~~~i~~~~ 132 (437)
|+++||+|||+++.++.+++.+++++++ +++|+++++++| .++.+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 478999999999 6788999999
Q ss_pred -cccccchHHHHHHHHHHHHHHHHHHHhhhhccCC-----CcchHHHHHhhHHHHHHHHHhhccCCCChhHHHhhCCCHH
Q 047673 133 -PKHIGGFNIGFQVCVATGILSANLLNYGTQKIKG-----GWGWRISLAMAVAPASILTIGLLFLPETPSSIIQRNNDYQ 206 (437)
Q Consensus 133 -~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~~~wr~~f~~~~i~~~~~~~~~~~l~esp~~~~~~~~~~~ 206 (437)
+++|++..++.+.+..+|.++++.++..+....+ .++||+.+.+..++.++.++..+++||||+|+..+++ .+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~-~~ 234 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK-QE 234 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC-HH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc-hh
Confidence 9999999999999999999999998887654322 3579999999999999998999999999999999999 89
Q ss_pred HHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc---------------------------ccccch
Q 047673 207 KAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ---------------------------LLSEST 259 (437)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 259 (437)
++.+.+++...++...++..+........+... .....++.+.... ..+...
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI 313 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc
Confidence 888888777655433333222222211111110 0011111000000 002333
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhccccccc
Q 047673 260 SLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQ------LVLICVYNAGFTFLWWPLGW 333 (437)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 333 (437)
. .......++..+++.++++++.||+|||+.++.+...+.++.+.+....... ....+++..++..+..++.+
T Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 314 A-LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3 5566777888999999999999999999999999888888877766544322 34444555566667788888
Q ss_pred ccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------c-cchhhHHHHHHHHHHHHhhhccccCCCCCHH
Q 047673 334 LVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHF------K-AGVFFFFGGWLIAMTTFVHFFLPETKNVPIE 406 (437)
Q Consensus 334 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (437)
.+.+|++|++.|+++.|+.+.++++++.+++.+++.+.+.. + ...++++++++++..++.++++||||+|+.|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 89999999999999999999999999999998887664422 2 3356777888888888888999999999999
Q ss_pred HHHHHHccccc
Q 047673 407 QMDKVWRVHWF 417 (437)
Q Consensus 407 ~~~~~~~~~~~ 417 (437)
|+|+.+|++.+
T Consensus 473 ei~~~f~~~~~ 483 (491)
T 4gc0_A 473 ELEALWEPETK 483 (491)
T ss_dssp HHGGGTC----
T ss_pred HHHHHhCCCCc
Confidence 99998876544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=9.3e-31 Score=247.76 Aligned_cols=360 Identities=9% Similarity=-0.003 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhh
Q 047673 4 FVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFAS 83 (437)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g 83 (437)
+.+.....+++..+..+++....++.. |.+.+++ |++..+.|++.+++.++..++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G 82 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAG 82 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 446667777788888999888777654 6777776 89999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHH---hhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHH
Q 047673 84 TVTRAFGRKASILVGGTTFLTSSAIG---GAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCV 147 (437)
Q Consensus 84 ~l~dr~Grr~~~~~~~~~~~~~~~~~---~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~ 147 (437)
+++||+|||+++.++.++.+++.+++ ++++|++.++++| ...+++.|++ +++|++++++.+.+.
T Consensus 83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 162 (438)
T 3o7q_A 83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999 6678899999 999999999999999
Q ss_pred HHHHHHHHHHHhhhh-ccCCC----------------------cchHHHHHhhHHHHHHHHHh--hccCCCChhHHHhhC
Q 047673 148 ATGILSANLLNYGTQ-KIKGG----------------------WGWRISLAMAVAPASILTIG--LLFLPETPSSIIQRN 202 (437)
Q Consensus 148 ~~G~~~~~~~~~~l~-~~~~~----------------------~~wr~~f~~~~i~~~~~~~~--~~~l~esp~~~~~~~ 202 (437)
.+|.++++.+++.+. ...+. .+||+.|++.++..++..+. ....||+++...+++
T Consensus 163 ~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 242 (438)
T 3o7q_A 163 SFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA 242 (438)
T ss_dssp HHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc
Confidence 999999999999887 44321 01999997766554443333 334577664221111
Q ss_pred CCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhhhccccchhh-h-hcccccccccccchHHHHHHHHHHHHHHHHhhhHH
Q 047673 203 NDYQKAEKIMQIVRGTADVQAELDDLIRQSSVSKNINHPFKK-I-IDRKYRPQLLSESTSLLMSALVTGGIGTVSTILPM 280 (437)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 280 (437)
+ .++..+..++..+++................. ....+.. . ++... -.+.... +.......++.+++.++.+
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 243 K-QGSFSASLSRLARIRHWRWAVLAQFCYVGAQT-ACWSYLIRYAVEEIP---GMTAGFA-ANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp S-TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHST---TCCHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred c-ccchhhhHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccC---CcchhHH-HHHHHHHHHHHHHHHHHHH
Confidence 2 22222333333333322211111000000000 0001111 1 11110 1245556 7888888999999999999
Q ss_pred HHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccccccccccccCChhhhhhHHHHHHHHHHHH
Q 047673 281 ILADKLGRKVLFLLGGIQILVSQVMIGSVMATQL-VLICVYNAGFTFLWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLF 359 (437)
Q Consensus 281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~ 359 (437)
++.||+|||+.+..+.++..++.+++........ ....+...+. ....+....+..|.+|++ ++.+.++.. .+.++
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 9999999999999988888887776666544432 2222222222 234455566767889977 888888777 77899
Q ss_pred HHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHH
Q 047673 360 TSLVAQTVLAMLYHFK-AGVFFFFGGWLIAMTTF 392 (437)
Q Consensus 360 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 392 (437)
+.++|.+.|.+.+..+ +...+.+.+++.+...+
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999988 66555554444444333
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=1.2e-31 Score=254.90 Aligned_cols=365 Identities=13% Similarity=0.001 Sum_probs=247.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHh
Q 047673 3 VFVVLSCIVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFA 82 (437)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 82 (437)
++++.....++++.+..+++....++.. |. ..+++ ++..+.|++.+++.++..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAM--PY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHH--HH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 4567778888888888888887766442 22 24456 789999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHhh----ccccceeeeee------------cchhhhhhcc-cccccchHHHHHH
Q 047673 83 STVTRAFGRKASILVGGTTFLTSSAIGGA----ALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQV 145 (437)
Q Consensus 83 g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~ 145 (437)
|+++||+|||+++.++.++.+++.+++++ ++|++.++++| ...+++.|++ +++|++++++.+.
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999 5678899999 8999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcc-hHHHHHhhHHHHHHHH-HhhccCCCChhHHHhhCCCH---H-HHHH--H------
Q 047673 146 CVATGILSANLLNYGTQKIKGGWG-WRISLAMAVAPASILT-IGLLFLPETPSSIIQRNNDY---Q-KAEK--I------ 211 (437)
Q Consensus 146 ~~~~G~~~~~~~~~~l~~~~~~~~-wr~~f~~~~i~~~~~~-~~~~~l~esp~~~~~~~~~~---~-~~~~--~------ 211 (437)
+..+|.++++.+++.+.+.. | ||+.|++.++..++.. +..+++||+|+....++++. + +.+. .
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT 239 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccc
Confidence 99999999999998876543 6 9999999887766544 44567888875422111100 0 0000 0
Q ss_pred -----HHHHhCCccHHHHHHHHHHHhhhhhccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhh
Q 047673 212 -----MQIVRGTADVQAELDDLIRQSSVSKNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILAD 284 (437)
Q Consensus 212 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 284 (437)
.++..+++....... .... ...........+ +.+... -.+..+. +.......++.+++.++.+++.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~l~~ 313 (451)
T 1pw4_A 240 AKQIFMQYVLPNKLLWYIAI--ANVF--VYLLRYGILDWS-PTYLKEVKHFALDKS-SWAYFLYEYAGIPGTLLCGWMSD 313 (451)
T ss_dssp CTHHHHHHTSSCHHHHHHHH--HHHH--HHHHHHHHHHHH-HHHBTTBSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHcCHHHHHHHH--HHHH--HHHHHHHHHHHH-HHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000 0000 000000000000 011111 1245556 78888889999999999999999
Q ss_pred hc--CchhHHHHhHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHH
Q 047673 285 KL--GRKVLFLLGGIQIL-VSQVMIGSVM--ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLL 358 (437)
Q Consensus 285 ~~--g~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 358 (437)
|+ ++|+.+..+..+.. ++.+++.... .........+..+++. ...+....+..|.+|++.|+++.|+.+...++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 314 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 99 99998877776665 5555444332 2222223333333332 23344456778999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHhhhcc
Q 047673 359 -FTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFVHFFL 397 (437)
Q Consensus 359 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
+..+++.+.+.+.+..++...+...+++.+.+.+..++.
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886554444444444444433333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=3.2e-27 Score=226.81 Aligned_cols=342 Identities=12% Similarity=0.044 Sum_probs=216.8
Q ss_pred CcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhh-hchhHHHHHHHHHHHHHHHHHhhccccceeeeee-----------
Q 047673 55 NYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRA-FGRKASILVGGTTFLTSSAIGGAALDIYMLILGL----------- 122 (437)
Q Consensus 55 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r----------- 122 (437)
+|+|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 4469999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred -cchhhhhhcc-ccc--ccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccC-----CC
Q 047673 123 -NAPISLRNGT-PKH--IGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFL-----PE 193 (437)
Q Consensus 123 -~~~~~i~~~~-~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l-----~e 193 (437)
...+++.|++ +++ |+.+.++++.+.++|..++|.+++.+.+.. |||+.|++.++..++..+..++. ++
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 6678899999 888 777888899999999999999999987654 79999999876655544443321 11
Q ss_pred ChhHHHhhCCCHHHHHHHHHH----------------HhCCccHHH--HH-HHHH---------HHhhhhh----cccc-
Q 047673 194 TPSSIIQRNNDYQKAEKIMQI----------------VRGTADVQA--EL-DDLI---------RQSSVSK----NINH- 240 (437)
Q Consensus 194 sp~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~--~~-~~~~---------~~~~~~~----~~~~- 240 (437)
..+...++.+ .++.++..+. ..+..+... .. .... ....... ..+.
T Consensus 204 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 204 HYLRPTDPLA-PEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp CCSCCSCCCS-HHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred cccCCCCccc-cchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 1100001111 2232222221 001100000 00 0000 0000000 0000
Q ss_pred -chhhhh----------c--c----ccccccc--ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHH-----HhH
Q 047673 241 -PFKKII----------D--R----KYRPQLL--SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFL-----LGG 296 (437)
Q Consensus 241 -~~~~~~----------~--~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~ 296 (437)
....++ . . .+..... +.... +.......+..+++.++.+++.||++||+... .+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPV-SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCS-GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCH-HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 000000 0 0 0000000 21233 55667778888889999999999999986544 666
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHH
Q 047673 297 IQILVSQVMIGSVM---------ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQT 366 (437)
Q Consensus 297 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~ 366 (437)
.+.+++.+.+.... ............+.+. ...+....+..|.+|++.|+++.|+.+...+++..+++.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555543 1112222223333332 3355557788899999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHhhhccccCC
Q 047673 367 VLAMLYHFKAGVFFFFGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 367 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
.+.+.+......+..++++..+..++.++..++.+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 442 VTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776654445566666655665555555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=2.4e-28 Score=226.34 Aligned_cols=340 Identities=12% Similarity=0.068 Sum_probs=227.2
Q ss_pred HHHHHHHHHHhhcccccccccCchHHHHHHHHHhhhhcccccccCCcccCChhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047673 10 IVAASGGLIFGYDIGISGGVTSMEPFLKKFFLEVYRKMKEDTKISNYCKFDSQLLAAFTSSLYIAGLIASLFASTVTRAF 89 (437)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~ 89 (437)
+.++++.+..+++....++.. |.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777776553 5555554 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhhhhhcc-cccccchHHHHHHHHHHHHHHHHH
Q 047673 90 GRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPISLRNGT-PKHIGGFNIGFQVCVATGILSANL 156 (437)
Q Consensus 90 Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~i~~~~-~~~r~~~~~~~~~~~~~G~~~~~~ 156 (437)
|||+++..+.++.+++.++.++++|++.+++.| ...+++.|++ +++|++++++.+.+..+|..+++.
T Consensus 63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999 5667889999 999999999999999999999999
Q ss_pred HHhhhhccCCCcchHHHHHhhHHHHHHHHH-hhccCCCChhHHHhhCCCHHHHHHHHHHHhCCccHHHHHHHHHHHhhhh
Q 047673 157 LNYGTQKIKGGWGWRISLAMAVAPASILTI-GLLFLPETPSSIIQRNNDYQKAEKIMQIVRGTADVQAELDDLIRQSSVS 235 (437)
Q Consensus 157 ~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~-~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (437)
+++.+.+. .+||+.|++.++..++..+ ..+++||+++...++++..+..++..++ +............
T Consensus 143 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 211 (375)
T 2gfp_A 143 IGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGN--------SGFNCYLLMLIGG 211 (375)
T ss_dssp HHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcC--------cchHHHHHHHHHH
Confidence 99988754 3899999988877776655 5567888865321111100000000000 0000000000000
Q ss_pred hccccchhhhhccccccc--ccccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHH-HHHHHH--HHHHHH
Q 047673 236 KNINHPFKKIIDRKYRPQ--LLSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQ-ILVSQV--MIGSVM 310 (437)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~--~~~~~~ 310 (437)
......+. .+.+.+... -.+.... +.......++.+++.++.+++.||++++. ..+... ...+.. ......
T Consensus 212 ~~~~~~~~-~~~~~~~~~~~g~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 2gfp_A 212 LAGIAAFE-ACSGVLMGAVLGLSSMTV-SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG 287 (375)
T ss_dssp HHHHHHHH-HHCSCSSHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 00000011 111111111 1144455 77888888999999999999999998732 222222 222222 222211
Q ss_pred --HHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 047673 311 --ATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGW 385 (437)
Q Consensus 311 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 385 (437)
+...........+++. ...+....+..|..| +.|+++.|+.+...+++..+++.+.+.+.+..++...+...++
T Consensus 288 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 288 VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 2222222222222222 234555667788888 8899999999999999999999999998877666555554443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.6e-24 Score=203.22 Aligned_cols=337 Identities=11% Similarity=0.003 Sum_probs=192.6
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHH---HHHhhcccc-ceeeeee-----------
Q 047673 58 KFDSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSS---AIGGAALDI-YMLILGL----------- 122 (437)
Q Consensus 58 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~a~~~-~~l~~~r----------- 122 (437)
|+++.+.|++.+.+.++..++++++|+++||+|||+++.++..+++++. ....+++.. ..++..+
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998887775532 212222211 1122222
Q ss_pred -cchhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhhccCC-CChhH
Q 047673 123 -NAPISLRNGT-P--KHIGGFNIGFQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGLLFLP-ETPSS 197 (437)
Q Consensus 123 -~~~~~i~~~~-~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~~~l~-esp~~ 197 (437)
.......++. + ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+ |+|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 1222333444 3 456777888887888899999999888764 2699999987766555555555544 43221
Q ss_pred HHhhC----CCHHHHHHHHHHHhCCccHHHHHHH-HHHHhhhhhccccchhhhhcccccccccccchHHHHHHHHHHHHH
Q 047673 198 IIQRN----NDYQKAEKIMQIVRGTADVQAELDD-LIRQSSVSKNINHPFKKIIDRKYRPQLLSESTSLLMSALVTGGIG 272 (437)
Q Consensus 198 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (437)
..+++ ++.+...+...+..+++........ .......... ...+...+.........+.... +.......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 272 (417)
T 2cfq_A 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVF-DQQFANFFTSFFATGEQGTRVF-GYVTTMGELLN 272 (417)
T ss_dssp SCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSSSHHHHTHHH-HHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCChhHH-HHHHHHHHHHH
Confidence 00000 0000000011111111111000000 0000000000 0000001111110000112233 55666777788
Q ss_pred HHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccccCChhhhhhHHHH
Q 047673 273 TVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGWLVPSEIFPLEIRSAGKSI 351 (437)
Q Consensus 273 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~ 351 (437)
+++.++.++++||+|||+.+..+..+.++..+.+....+...........+... ...+..+.+.+|.+|++.|+++.++
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 899999999999999999988888777776555543222221111111111111 1223335677899999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHHHHHHHhhhccccC
Q 047673 352 T-VAVGLLFTSLVAQTVLAMLYHFKAGVF-FFFGGWLIAMTTFVHFFLPET 400 (437)
Q Consensus 352 ~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~ 400 (437)
. +..+.+++.++|.+.|.+.+..++... ...+++.++..++.+...+|+
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 5 778889999999999999988775444 344444444444444444443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=4.8e-23 Score=199.39 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=113.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhhh-chhHHHHHHHHHHHHHHHHHhhcc-ccceeeeee------------cc
Q 047673 59 FDSQLLAAFTSSLYIAGLIASLFASTVTRAF-GRKASILVGGTTFLTSSAIGGAAL-DIYMLILGL------------NA 124 (437)
Q Consensus 59 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~a~-~~~~l~~~r------------~~ 124 (437)
++..+.|++.+++.++..++++++|+++||+ |||+++.++.++.+++.++.++++ +++.++++| ..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 999999989 55
Q ss_pred hhhhhhcc-cccccchHHH---HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHhh
Q 047673 125 PISLRNGT-PKHIGGFNIG---FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIGL 188 (437)
Q Consensus 125 ~~~i~~~~-~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~~ 188 (437)
.+++.|++ +++|+++.+. ...+.++|.+++|.+++.+.+.. +||+.|++.++..++..+..
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHH
Confidence 67899999 9999877666 88999999999999998887543 89999999877766655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.19 E-value=4.8e-11 Score=112.71 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhh-ccc
Q 047673 255 LSESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS----VMATQLVLICVYNAGFTF-LWW 329 (437)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~ 329 (437)
.+..+. +...+...++..++.++.|+++||+|||+++..+.++.+++.++..+ ..+.....+..+..+.+. ...
T Consensus 59 ~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 59 FSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 137 (451)
T ss_dssp TCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTH
T ss_pred ccHhHH-HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhcc
Confidence 456667 89999999999999999999999999999999999999998888877 433333333333334333 344
Q ss_pred ccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhH-HHHHHHHHHHHhhhccccCC
Q 047673 330 PLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK-AGVFFF-FGGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 330 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 401 (437)
+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+ |...+. .++..++..++..+.+||++
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 5556778899999999999999999999999999999999888887 765444 44444444555555666543
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.04 E-value=3e-10 Score=104.54 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=108.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTFL-WWPLGWL 334 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 334 (437)
+..+. +...+...+...++.++.|+++||+|||+.+..+..+..++.+......+........+..+.+.+ ..+....
T Consensus 33 s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~ 111 (375)
T 2gfp_A 33 REGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMART 111 (375)
T ss_dssp TTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34455 788899999999999999999999999999999999999988888777665544444444444433 4455567
Q ss_pred cccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHHhhhccccCC
Q 047673 335 VPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFF-GGWLIAMTTFVHFFLPETK 401 (437)
Q Consensus 335 ~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 401 (437)
++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+|...+.. ++...+..+...+..||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 112 LPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 778999999999999999999999999999999988877676544443 3333333333445555543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.00 E-value=8e-10 Score=103.21 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHHHHHHHHHHHHHHHHHhhccccceeeeee------------cchhh
Q 047673 60 DSQLLAAFTSSLYIAGLIASLFASTVTRAFGRKASILVGGTTFLTSSAIGGAALDIYMLILGL------------NAPIS 127 (437)
Q Consensus 60 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r------------~~~~~ 127 (437)
+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++.. ....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888899999999999999999999999999988888888887777766554443 34568
Q ss_pred hhhcc-cccccchHHH-HHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHhhHHHHHHHHHh-hccCCCCh
Q 047673 128 LRNGT-PKHIGGFNIG-FQVCVATGILSANLLNYGTQKIKGGWGWRISLAMAVAPASILTIG-LLFLPETP 195 (437)
Q Consensus 128 i~~~~-~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~~~wr~~f~~~~i~~~~~~~~-~~~l~esp 195 (437)
+.|.+ ++.|+.+.+. ++.+..+|..++|.+++.+.+.. |++..|.+.++..++..+. ....||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 88999 8899999998 48888899999999999877543 7888888877776665554 44566654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.99 E-value=1.1e-09 Score=102.85 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=91.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhh-ccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMI---GSVMATQLVLICVYNAGFTF-LWWPL 331 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~ 331 (437)
+..+. +.+.+...++..++.++.|+++||+|||+.+..+.++.+++.++. ....+.....+..+..+.+. ...+.
T Consensus 59 s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 59 TNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETA 137 (438)
T ss_dssp CSHHH-HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhh
Confidence 45566 889999999999999999999999999999999999999888887 33333333333333333333 33445
Q ss_pred ccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047673 332 GWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAML 371 (437)
Q Consensus 332 ~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (437)
...++.|.+|+++|+++.++.+....+|..+++.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999888
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.96 E-value=5.1e-10 Score=106.91 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhh-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADK-LGRKVLFLLGGIQILVSQVMIGSVMATQLVLICVYNAGFTF-LWWPLGW 333 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 333 (437)
+..+. +...+...++..++.++.|+++|| +|||+++..+.++.+++.++.....+.....+..+..+.+. ...+...
T Consensus 52 s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 52 TRATA-ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 44555 888899999999999999999999 89999999999998888887766544333333333333333 2445556
Q ss_pred ccccccCChhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 047673 334 LVPSEIFPLEI--RSAGKSITVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTT 391 (437)
Q Consensus 334 ~~~~~~~p~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 391 (437)
.++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..+|...+...++..+.+.
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 77789999988 77788888899999999999999999998887655444444333333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.94 E-value=5.4e-09 Score=100.71 Aligned_cols=137 Identities=14% Similarity=0.009 Sum_probs=101.2
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHhhhc-CchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh-cccccc
Q 047673 256 SESTSLLMSALVTGGIGTVSTILPMILADKL-GRKVLFLLGGIQILVSQVMIGSVM-ATQLVLICVYNAGFTF-LWWPLG 332 (437)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 332 (437)
+..+. +.......++..++.++.|+++||+ |||+.+..+.++.+++.++..... +........+..+.+. ...+..
T Consensus 52 s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 52 RGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 45566 8888899999999999999999999 999999999998888888777665 4443333333333333 344555
Q ss_pred cccccccCChhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHh
Q 047673 333 WLVPSEIFPLEIRSAGKSI---TVAVGLLFTSLVAQTVLAMLYHFKAGVFFFFGGWLIAMTTFV 393 (437)
Q Consensus 333 ~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 393 (437)
..++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+..+|...+...++..+...+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 6778899999999776666 888899999999999999988878665444444444433333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.84 E-value=1.3e-08 Score=97.18 Aligned_cols=139 Identities=13% Similarity=-0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhcCchhHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Q 047673 262 LMSALVTGGIGTVSTILPMILADKLGRKVLFLLGGIQILVSQVMIGS------------------VMATQLVLICVYNAG 323 (437)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 323 (437)
+.+.+...++.++|+++.|+++||+|||+.+.++.++..++.++..+ ..+.....+.-+..+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999998888877663 222223344444444
Q ss_pred hhhc-ccccccccccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHHHhh
Q 047673 324 FTFL-WWPLGWLVPSEIFPLEIRSAGKSITVAVGLLFTSLVAQTVLAMLYHFK--------AGVFFFFGGWLIAMTTFVH 394 (437)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~ 394 (437)
++.+ ..+....+++|..|++.|+...++.+.....|..+++.+........+ |........+..+...+..
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 4433 345566788999999999999999888877777666655544443221 2233333333444444455
Q ss_pred hccccC
Q 047673 395 FFLPET 400 (437)
Q Consensus 395 ~~~~~~ 400 (437)
++.||.
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 566664
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.95 E-value=3.4 Score=19.35 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.4
Q ss_pred HhhhhhhhhchhHH
Q 047673 81 FASTVTRAFGRKAS 94 (437)
Q Consensus 81 ~~g~l~dr~Grr~~ 94 (437)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36789999999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=25.83 E-value=1.1e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchh
Q 047673 68 TSSLYIAGLIASLFASTVTRAFGRK 92 (437)
Q Consensus 68 ~s~~~l~~~i~~~~~g~l~dr~Grr 92 (437)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456788888999999999987644
Done!