BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047674
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
 pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
          Length = 237

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 223 LKFLGIFRQPVIDEKRSVFNVQCPPGKVLVVEGGEARC 260
           L FLG+     +  K S   V+C PGK   + GG  RC
Sbjct: 58  LGFLGLVH--CLPCKDSCDGVECGPGKACRMLGGRPRC 93


>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
           Complex
          Length = 209

 Score = 27.7 bits (60), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 217 GKKSAPLKFLGIFRQPVIDEKRSVFNVQCPPGKVLVVEGGEARC 260
           G K   L FLG+     +  K S   V+C PGK   + GG  RC
Sbjct: 43  GNKINLLGFLGLVH--CLPCKDSCDGVECGPGKACRMLGGRPRC 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,582,230
Number of Sequences: 62578
Number of extensions: 230855
Number of successful extensions: 510
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)