BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047674
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XII1|PDV2_ARATH Plastid division protein PDV2 OS=Arabidopsis thaliana GN=PDV2 PE=1
SV=1
Length = 307
Score = 238 bits (607), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 192/304 (63%), Gaps = 30/304 (9%)
Query: 1 AAELRLKINKCIHKAS------------LSPDKQEKEEGVVANGEEE-----EEDYCE-E 42
A ELRLKI+ CI +S LSP + K E ++ N +++ ED E E
Sbjct: 14 ATELRLKISDCIDNSSTTVSDNGDGNEDLSPGEGRKSE-IIGNQDKDFDSISSEDVDEAE 72
Query: 43 SERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEV 102
+ERLL I ALE+LE+QL++LQNL+ +Q+Y++++AL+EI++SRKMLLEKLKEY+G+D EV
Sbjct: 73 AERLLRIRDALEALESQLASLQNLRQRQQYEKQLALSEIDYSRKMLLEKLKEYKGKDFEV 132
Query: 103 IHEASAFAGETVQHDNDLLLPPYPNRLPLSLTLE--NGYLSQFRYPRKSVQNGVITGELT 160
+ E + FAGE V ++NDLLLPPYP PLSL L+ NGYLS +KS NG +G +
Sbjct: 133 LRETTTFAGERVDYENDLLLPPYPVHPPLSLGLDNNNGYLSHLPSKKKSDANGFGSGHVR 192
Query: 161 KEGNKNIYESERNQVQTGSTTSRKGFGHFISSLAKTLLPLVGVVYVLNMSGVAQNLGKKS 220
E+E GS S G F+ S+AK +LP++GV+ +L+ SG + K+
Sbjct: 193 N-------EAEAKSPNGGSGGSSHGVIRFLGSVAKIVLPIIGVISLLSASGYGPEMRKRG 245
Query: 221 APLKFLGIFRQPVIDEKRSVFNVQCPPGKVLVVEGGEARCIVKERVEIPFDSVAVKPDIN 280
A L G+ KR+ QCPPGKVLV+E GEARC+VKERVEIPFDSV K D+
Sbjct: 246 ASLNLFGLLPHRATRGKRTPN--QCPPGKVLVIEDGEARCLVKERVEIPFDSVVAKRDVT 303
Query: 281 YGSG 284
YG G
Sbjct: 304 YGYG 307
>sp|Q9FK13|PDV1_ARATH Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1
SV=1
Length = 272
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 17/148 (11%)
Query: 34 EEEEDYCEESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLK 93
++ + +E++ L +I ALE+LE QL + QQR +++VA+A +E SR +L +L
Sbjct: 72 DDNDSTIQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQSRILLAMRLA 131
Query: 94 EYRGEDLEVIHEASAFAGETVQHDNDLLLPPY----------PNRLPLSLT---LENGYL 140
E+ G++ V+ EA AF G +++ ++ + P + N +P + + N +
Sbjct: 132 EHHGKNYGVLEEALAFVG-SIKSNSHYVSPDHLYDSSRNPDGANSIPDGIESNFVINAFA 190
Query: 141 SQFRYPRKSVQNGVITGELTKEGNKNIY 168
S F + ++++ + G L GN I+
Sbjct: 191 STFGFAKRALGFNHVKGVL---GNAAIF 215
>sp|Q8DAU9|KDSB_VIBVU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain CMCP6) GN=kdsB PE=3 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 212 VAQNLGKKSAPLKFLGIFRQPVIDEKRSVFNVQCPPGKVLVVEGGEARCIVKERVEIPFD 271
VA+NL SAP+ LG+ I + VFN P V VV E + R IP+D
Sbjct: 112 VAENLAASSAPMATLGV----AITSEEEVFN----PNAVKVVTDKEGYALYFSRATIPWD 163
>sp|Q7MJ10|KDSB_VIBVY 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain YJ016) GN=kdsB PE=3 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 212 VAQNLGKKSAPLKFLGIFRQPVIDEKRSVFNVQCPPGKVLVVEGGEARCIVKERVEIPFD 271
VA+NL SAP+ LG+ I + VFN P V VV E + R IP+D
Sbjct: 112 VAENLAASSAPMATLGV----AITSEEEVFN----PNAVKVVTDKEGYALYFSRATIPWD 163
>sp|A7Y397|MATK_IPOPU Maturase K OS=Ipomoea purpurea GN=matK PE=3 SV=1
Length = 502
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 78 LAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDNDLL--LPPYPNRL 129
+ EI FS + +LE+ K + ++L IH F + H N +L L PYP L
Sbjct: 99 IVEIPFSLRFILERKKILKSQNLRSIHSIFPFLEDNFSHLNYVLDILIPYPPHL 152
>sp|Q8RDL3|RECF_THETN DNA replication and repair protein RecF OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=recF PE=3 SV=1
Length = 364
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 85 RKMLLEKLK--------EYRGEDLEVIHEASAFAGETVQHDNDLLLPPYPNRLPLSLTLE 136
R LEKLK E E LE+I+ SA E H+ +L+ NRL SLTL+
Sbjct: 197 RNNYLEKLKNSMSKFLMEISNEKLEIIYLNSAGVKEV--HEENLIREKLKNRLTKSLTLD 254
Query: 137 NGYLS 141
YLS
Sbjct: 255 LKYLS 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,469,737
Number of Sequences: 539616
Number of extensions: 4494279
Number of successful extensions: 16799
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 16681
Number of HSP's gapped (non-prelim): 177
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)