Query 047674
Match_columns 284
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 13:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00274 FOLN Follistatin-N- 92.3 0.097 2.1E-06 33.7 1.8 21 242-262 4-25 (26)
2 PF09289 FOLN: Follistatin/Ost 77.5 1.9 4E-05 27.2 1.8 19 242-260 3-22 (22)
3 PF05414 DUF1717: Viral domain 61.7 5.2 0.00011 33.1 1.7 25 255-279 69-93 (101)
4 KOG2150 CCR4-NOT transcription 50.9 55 0.0012 34.7 7.3 75 41-119 119-193 (575)
5 PRK04325 hypothetical protein; 48.8 1.2E+02 0.0027 23.4 7.4 46 49-94 7-55 (74)
6 PRK00846 hypothetical protein; 47.2 1.3E+02 0.0029 23.9 7.4 48 49-96 11-61 (77)
7 COG4405 Uncharacterized protei 45.6 24 0.00053 31.1 3.3 28 247-274 59-90 (140)
8 smart00502 BBC B-Box C-termina 45.3 1.4E+02 0.003 22.9 8.3 20 100-119 88-107 (127)
9 cd01328 FSL_SPARC Follistatin- 45.0 29 0.00064 27.9 3.5 41 242-282 4-48 (86)
10 PRK00736 hypothetical protein; 44.8 1.4E+02 0.003 22.8 7.1 44 51-94 5-51 (68)
11 PF04102 SlyX: SlyX; InterPro 42.6 1.3E+02 0.0028 22.7 6.5 46 50-95 3-51 (69)
12 PRK02793 phi X174 lysis protei 41.3 1.6E+02 0.0036 22.6 7.2 46 49-94 6-54 (72)
13 PRK00295 hypothetical protein; 41.3 1.6E+02 0.0034 22.4 7.1 44 51-94 5-51 (68)
14 PF04000 Sas10_Utp3: Sas10/Utp 40.6 1.5E+02 0.0032 21.9 8.3 63 46-108 2-78 (85)
15 PF02954 HTH_8: Bacterial regu 39.0 81 0.0018 21.3 4.5 41 53-95 2-42 (42)
16 PRK10328 DNA binding protein, 38.6 66 0.0014 27.8 4.9 30 44-73 6-43 (134)
17 PRK04406 hypothetical protein; 38.2 1.9E+02 0.0042 22.5 7.3 47 48-94 8-57 (75)
18 KOG0103 Molecular chaperones H 37.5 70 0.0015 34.8 5.8 53 70-122 646-698 (727)
19 KOG3081 Vesicle coat complex C 35.8 74 0.0016 31.2 5.2 26 65-90 159-184 (299)
20 PRK02119 hypothetical protein; 35.4 2.1E+02 0.0045 22.1 7.5 47 48-94 6-55 (73)
21 PF13747 DUF4164: Domain of un 34.3 2.4E+02 0.0053 22.5 7.9 63 44-108 8-70 (89)
22 PRK10947 global DNA-binding tr 32.8 1.7E+02 0.0038 25.3 6.5 41 44-84 6-54 (135)
23 PF10186 Atg14: UV radiation r 32.2 3.7E+02 0.0079 24.0 9.0 69 42-110 89-157 (302)
24 COG5665 NOT5 CCR4-NOT transcri 31.8 1.7E+02 0.0036 30.4 7.1 47 43-93 111-158 (548)
25 KOG0728 26S proteasome regulat 31.7 46 0.001 33.0 3.2 55 63-118 23-79 (404)
26 PF00816 Histone_HNS: H-NS his 31.5 66 0.0014 25.0 3.5 28 55-82 2-30 (93)
27 PF08653 DASH_Dam1: DASH compl 31.0 93 0.002 23.6 4.0 40 44-91 5-44 (58)
28 PF07562 NCD3G: Nine Cysteines 30.4 24 0.00052 25.5 0.8 19 242-260 6-24 (54)
29 PRK10227 DNA-binding transcrip 29.5 2.2E+02 0.0049 23.9 6.6 38 69-106 86-126 (135)
30 COG0684 MenG Demethylmenaquino 28.1 42 0.00092 31.0 2.2 22 241-262 64-86 (210)
31 PRK10361 DNA recombination pro 27.9 2.5E+02 0.0054 29.2 7.7 53 44-96 53-105 (475)
32 PF09006 Surfac_D-trimer: Lung 27.1 1.5E+02 0.0031 21.9 4.3 23 47-69 2-24 (46)
33 PF10076 DUF2313: Uncharacteri 26.3 3E+02 0.0064 23.6 6.9 76 40-115 25-106 (179)
34 PRK13729 conjugal transfer pil 25.4 3.4E+02 0.0074 28.3 8.2 53 41-93 66-121 (475)
35 PF07956 DUF1690: Protein of U 25.3 2.4E+02 0.0053 24.4 6.2 61 49-112 80-140 (142)
36 PRK10476 multidrug resistance 25.1 4.8E+02 0.01 24.4 8.6 29 44-72 86-114 (346)
37 KOG1869 Splicing coactivator S 25.0 1.1E+02 0.0024 31.3 4.5 38 56-93 66-103 (425)
38 KOG0980 Actin-binding protein 23.6 2.2E+02 0.0048 32.0 6.8 50 46-95 353-402 (980)
39 PF15186 TEX13: Testis-express 23.5 1.6E+02 0.0035 26.4 4.8 33 63-95 108-140 (152)
40 cd00552 RaiA RaiA ("ribosome-a 23.4 72 0.0016 24.0 2.3 19 45-63 72-90 (93)
41 TIGR02231 conserved hypothetic 23.2 2.2E+02 0.0048 28.6 6.3 32 241-272 377-415 (525)
42 PF00429 TLV_coat: ENV polypro 21.8 1.7E+02 0.0037 30.4 5.3 50 45-109 436-485 (561)
43 PF05549 Allexi_40kDa: Allexiv 21.4 2.8E+02 0.006 27.0 6.2 53 41-93 75-135 (271)
44 COG0789 SoxR Predicted transcr 21.1 4.1E+02 0.0089 20.8 6.4 49 45-93 59-111 (124)
45 PF04942 CC: CC domain; Inter 20.8 56 0.0012 22.4 1.1 14 243-256 18-31 (36)
46 cd04784 HTH_CadR-PbrR Helix-Tu 20.8 3.8E+02 0.0081 21.8 6.2 30 68-97 85-114 (127)
47 PLN03086 PRLI-interacting fact 20.8 1.7E+02 0.0037 30.9 5.1 69 50-125 31-99 (567)
48 PF10107 Endonuc_Holl: Endonuc 20.6 3.2E+02 0.0069 24.7 6.1 43 53-95 36-81 (156)
49 PF03670 UPF0184: Uncharacteri 20.4 3.4E+02 0.0073 22.1 5.7 21 44-64 33-53 (83)
50 PF12761 End3: Actin cytoskele 20.3 1.7E+02 0.0037 27.1 4.5 37 42-82 158-194 (195)
51 PRK09039 hypothetical protein; 20.1 4.8E+02 0.01 25.4 7.7 39 45-83 138-179 (343)
52 PF01346 FKBP_N: Domain amino 20.1 3.5E+02 0.0076 21.5 5.8 41 41-81 46-92 (124)
No 1
>smart00274 FOLN Follistatin-N-terminal domain-like. Follistatin-N-terminal domain-like, EGF-like. Region distinct from the kazal-like sequence
Probab=92.35 E-value=0.097 Score=33.66 Aligned_cols=21 Identities=71% Similarity=1.283 Sum_probs=18.3
Q ss_pred CCCCCCCeEEEe-eCCeeeeEe
Q 047674 242 NVQCPPGKVLVV-EGGEARCIV 262 (284)
Q Consensus 242 ~~qCPPGk~~Vl-eDG~a~CvV 262 (284)
.++||+||+=++ +.|+++|+.
T Consensus 4 ~v~C~~G~~C~~d~~g~p~Cv~ 25 (26)
T smart00274 4 NVQCPFGKVCVVDKGGNARCVX 25 (26)
T ss_pred CEECCCCCEEEeCCCCCEEEec
Confidence 589999998888 689999975
No 2
>PF09289 FOLN: Follistatin/Osteonectin-like EGF domain; InterPro: IPR015369 This domain is predominantly found in osteonectin and follistatin. They adopt an EGF-like structure [, ]. Follistatin is involved in diverse activities from embryonic development to cell secretion. ; GO: 0005515 protein binding; PDB: 1LR7_A 1LR8_A 1LR9_A 2ARP_F 3B4V_H 2KCX_A 3SEK_C 2P6A_D 3HH2_C 2B0U_D ....
Probab=77.45 E-value=1.9 Score=27.24 Aligned_cols=19 Identities=47% Similarity=0.899 Sum_probs=13.7
Q ss_pred CCCCCCCeEEEe-eCCeeee
Q 047674 242 NVQCPPGKVLVV-EGGEARC 260 (284)
Q Consensus 242 ~~qCPPGk~~Vl-eDG~a~C 260 (284)
.++|.|||+=.+ ++|+.+|
T Consensus 3 n~~Ck~GKvC~~d~~~~P~C 22 (22)
T PF09289_consen 3 NFHCKRGKVCKVDEQGKPHC 22 (22)
T ss_dssp T---BTTEEEEEETTTCEEE
T ss_pred CcccCCCCEeeeCCCCCcCC
Confidence 589999998777 6999988
No 3
>PF05414 DUF1717: Viral domain of unknown function (DUF1717); InterPro: IPR008745 The domain is found towards the N terminus of the polyprotein of Apple stem grooving virus (strain P-209) (ASGV), Citrus tatter leaf virus and from Apple stem grooving virus (strain Korea) (ASGV) (Pear black necrotic leaf spot virus). Its function is unknown [, ].
Probab=61.71 E-value=5.2 Score=33.14 Aligned_cols=25 Identities=40% Similarity=0.620 Sum_probs=21.8
Q ss_pred CCeeeeEeeeeeeccCCCCCCCCCc
Q 047674 255 GGEARCIVKERVEIPFDSVAVKPDI 279 (284)
Q Consensus 255 DG~a~CvVKERvEiPF~~~v~~Pdv 279 (284)
.|.-.|+-|||++||-++-++-|.+
T Consensus 69 pGhlfCi~~e~~~ip~dsqiK~pe~ 93 (101)
T PF05414_consen 69 PGHLFCIQQERSKIPHDSQIKIPEC 93 (101)
T ss_pred CceEEEeecccccCCccceeecCcc
Confidence 4677899999999999999888765
No 4
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=50.87 E-value=55 Score=34.65 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCCccccCCC
Q 047674 41 EESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDND 119 (284)
Q Consensus 41 ~Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage~ve~~~d 119 (284)
+..+..-=|.+.++.||.|++.|++ +.+||.....+.-+-..-|+.|+-..---.-+-|++--.+.-.-|+.+.|
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~ea----~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqDdi~yyVe~nqd 193 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFEA----EELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQDDITYYVESNQD 193 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhHHHHHHHHhccC
Confidence 3556677899999999999999999 88999999999999988888888777766667777766676666766665
No 5
>PRK04325 hypothetical protein; Provisional
Probab=48.83 E-value=1.2e+02 Score=23.39 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 49 IHQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
+-+-+++||..|+|....- +..-++.+.-|.+|+.-=..|..||++
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999887432 344455555567777666677788876
No 6
>PRK00846 hypothetical protein; Provisional
Probab=47.18 E-value=1.3e+02 Score=23.93 Aligned_cols=48 Identities=25% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 49 IHQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
+-+-|++||.+|+|....- ++.-++....|.+|.+-=..|..||++-.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466888999998877432 45556666777888877778888888543
No 7
>COG4405 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.59 E-value=24 Score=31.13 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=21.4
Q ss_pred CCe-EEEee-CCeeeeEee--eeeeccCCCCC
Q 047674 247 PGK-VLVVE-GGEARCIVK--ERVEIPFDSVA 274 (284)
Q Consensus 247 PGk-~~Vle-DG~a~CvVK--ERvEiPF~~~v 274 (284)
+|. +.|++ .|+|+|+|+ +=.++||..+-
T Consensus 59 vG~~~iv~d~~g~a~C~I~~t~V~~~~F~~v~ 90 (140)
T COG4405 59 VGEFVIVLDGRGQARCVIRLTKVFLTTFNEVD 90 (140)
T ss_pred CCceEEEEcCCCCEEEEEEEEEEEEEecCCcC
Confidence 487 66666 789999987 56788998753
No 8
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.29 E-value=1.4e+02 Score=22.86 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhCCccccCCC
Q 047674 100 LEVIHEASAFAGETVQHDND 119 (284)
Q Consensus 100 ~~Vi~Ea~aFage~ve~~~d 119 (284)
+.=+..+..|+-+.+++.++
T Consensus 88 l~~l~~~~~~~e~~l~~~~~ 107 (127)
T smart00502 88 QEKLSHAINFTEEALNSGDP 107 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 33345566677666666553
No 9
>cd01328 FSL_SPARC Follistatin-like SPARC (secreted protein, acidic, and rich in cysteines) domain; SPARC/BM-40/osteonectin is a multifunctional glycoprotein which modulates cellular interaction with the extracellular matrix by its binding to structural matrix proteins such as collagen and vitronectin. The protein it composed of an N-terminal acidic region, a follistatin (FS) domain and an EF-hand calcium binding domain. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a small hydrophobic core of alpha/beta structure (Kazal domain) and has five disulfide bonds and a conserved N-glycosylation site. The FSL_SPARC domain is a member of the superfamily of kazal-like proteinase inhibitors and follistatin-like proteins.
Probab=44.96 E-value=29 Score=27.93 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEee-CCeeeeEeeeeeec---cCCCCCCCCCccCC
Q 047674 242 NVQCPPGKVLVVE-GGEARCIVKERVEI---PFDSVAVKPDINYG 282 (284)
Q Consensus 242 ~~qCPPGk~~Vle-DG~a~CvVKERvEi---PF~~~v~~Pdv~YG 282 (284)
.++|++|++=+++ +|+++|+=.+.=.- ||..|=++=+..|.
T Consensus 4 ~v~C~~G~~C~~d~~~~p~CvC~~~Cp~~~~~~~~VCGsDg~TY~ 48 (86)
T cd01328 4 NHHCGAGKVCEVDDENTPKCVCIDPCPEEVDDRRKVCTNDNETFD 48 (86)
T ss_pred CcCCCCCCEeeECCCCCeEEecCCcCCCCCCCCCceeCCCCCCcc
Confidence 5899999988886 89999987654222 22335556666665
No 10
>PRK00736 hypothetical protein; Provisional
Probab=44.80 E-value=1.4e+02 Score=22.77 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 51 QALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 51 dALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
+-+++||.+|+|....- +..-++.+..|.+|..-=..|..||++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999998887432 344455555667777766777888876
No 11
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.57 E-value=1.3e+02 Score=22.74 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 50 HQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 50 rdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
-+-|++||..|+++...- +..-++.+.-|.+|++-=..|..||++-
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356888898888887432 3445566666778888878888888853
No 12
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.31 E-value=1.6e+02 Score=22.62 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 49 IHQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
+-+-|.+||.+|+|....- +..-++.+..|.+|+.-=..|..||++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466888999998887432 334445555567777666667777775
No 13
>PRK00295 hypothetical protein; Provisional
Probab=41.26 E-value=1.6e+02 Score=22.45 Aligned_cols=44 Identities=9% Similarity=0.201 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 51 QALESLEAQLSNLQNL---QLQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 51 dALe~LE~qL~~lq~l---q~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
+-+++||.+|++.... .+..-++.+.-|.+|+.-=..|..||++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999888743 2344555555567777666677778886
No 14
>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []. It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].
Probab=40.59 E-value=1.5e+02 Score=21.88 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHh
Q 047674 46 LLSIHQALESLEAQLSNLQNLQL--------------QQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASA 108 (284)
Q Consensus 46 L~~IrdALe~LE~qL~~lq~lq~--------------qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~a 108 (284)
|..|.++++++++.|.-|+...+ --++.-+..++-+-.+=-.++-|+....-.++.|++|...
T Consensus 2 l~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r 78 (85)
T PF04000_consen 2 LKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVR 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 45688899999999988885543 3345556666777777777788888888888888888653
No 15
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=38.96 E-value=81 Score=21.33 Aligned_cols=41 Identities=32% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 53 LESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 53 Le~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
|+++|.++ ++..-.+..-....|-..|.=||..|-.||++|
T Consensus 2 l~~~E~~~--i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 2 LEEFEKQL--IRQALERCGGNVSKAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHHH--HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHHH--HHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566554 222222222233455577888899999998876
No 16
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=38.56 E-value=66 Score=27.78 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=20.6
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHhHhH
Q 047674 44 ERLLSIHQ--------ALESLEAQLSNLQNLQLQQRYD 73 (284)
Q Consensus 44 ~sL~~Ird--------ALe~LE~qL~~lq~lq~qQ~~e 73 (284)
+.|..||. .||.||+.|+-|..+-...+.|
T Consensus 6 k~l~n~R~lra~~re~~~e~Lee~~ekl~~vv~er~~~ 43 (134)
T PRK10328 6 QSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREE 43 (134)
T ss_pred HHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 4889999999998665444443
No 17
>PRK04406 hypothetical protein; Provisional
Probab=38.20 E-value=1.9e+02 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 48 SIHQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 48 ~IrdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
.+-+-+.+||.+|++....- +..-++.+.-|.+|..-=..|..||++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577889999999887432 334444555556666655666777775
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=37.55 E-value=70 Score=34.75 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=39.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCCccccCCCccC
Q 047674 70 QRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDNDLLL 122 (284)
Q Consensus 70 Q~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage~ve~~~dl~l 122 (284)
--.+|-.++.++++++.....-...+.-+-..-|+||..|.-+...+.+.+..
T Consensus 646 e~~~r~k~~d~~~~~i~~~r~~~~~~~~k~~~~~~~a~kw~~~~~~~q~~~~~ 698 (727)
T KOG0103|consen 646 ENEERPKAFDELGKKIQEIRKAIESEMEKVLLEIEEAEKWLERKSNKQNKLSK 698 (727)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Confidence 34567778888887777766666667777778889999999888888775433
No 19
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.78 E-value=74 Score=31.23 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 047674 65 NLQLQQRYDREVALAEIEFSRKMLLE 90 (284)
Q Consensus 65 ~lq~qQ~~erd~ala~le~SR~~Ll~ 90 (284)
.|..-|+++-|++|.+|.+|++.|+.
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhc
Confidence 56678899999999999999998864
No 20
>PRK02119 hypothetical protein; Provisional
Probab=35.39 E-value=2.1e+02 Score=22.13 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 48 SIHQALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 48 ~IrdALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
.+-+-+.+||.+|++....- +..-++.+..|.+|..-=..|..||++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888999988887432 344455555566777666667777775
No 21
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=34.28 E-value=2.4e+02 Score=22.53 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHh
Q 047674 44 ERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASA 108 (284)
Q Consensus 44 ~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~a 108 (284)
..|-.|..||..||.-+.--.. ..+.+.+-+.=+.+|..=|--|.++|-+-..+ +.-++++.+
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~-~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar-~~~Le~~~~ 70 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLE-RDRKRDELEEEIQRLDADRSRLAQELDQAEAR-ANRLEEANR 70 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 3466677777777766554332 22222344444577777777788888765555 455555543
No 22
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=32.75 E-value=1.7e+02 Score=25.26 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=32.5
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 047674 44 ERLLSIHQ--------ALESLEAQLSNLQNLQLQQRYDREVALAEIEFS 84 (284)
Q Consensus 44 ~sL~~Ird--------ALe~LE~qL~~lq~lq~qQ~~erd~ala~le~S 84 (284)
+.|..||. .||.||+.|+-|..+-...+.|-++..+++++-
T Consensus 6 k~l~niR~lra~~re~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er 54 (135)
T PRK10947 6 KILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEER 54 (135)
T ss_pred HHHHhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666654 589999999999999888888888877777764
No 23
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.23 E-value=3.7e+02 Score=23.96 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhh
Q 047674 42 ESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFA 110 (284)
Q Consensus 42 Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFa 110 (284)
..+.+..+|++|+.....|+..+.+..............++..+..+..--.+...+....+.|+..+-
T Consensus 89 ~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~if 157 (302)
T PF10186_consen 89 KRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555553332222222222333344444444433322333445667777777654
No 24
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=31.82 E-value=1.7e+02 Score=30.38 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHHHHHh
Q 047674 43 SERLLSIHQALESLEAQLSNLQNLQLQQRYDREVA-LAEIEFSRKMLLEKLK 93 (284)
Q Consensus 43 a~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~a-la~le~SR~~Ll~kl~ 93 (284)
.....-|.+||+.||.||+...+-....|+||..- ++.|| .+|.||.
T Consensus 111 ~d~i~~i~~~~~el~~q~e~~ea~e~e~~~erh~~h~~~le----~i~~~l~ 158 (548)
T COG5665 111 RDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEFHIANLE----NILKKLQ 158 (548)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHh
Confidence 34567899999999999999988777778888642 34443 3455554
No 25
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.70 E-value=46 Score=32.99 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=44.2
Q ss_pred HHHHH--HHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCCccccCC
Q 047674 63 LQNLQ--LQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDN 118 (284)
Q Consensus 63 lq~lq--~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage~ve~~~ 118 (284)
.|.++ ++|-+++...|-|||.-|.-|-.|+. ..-.+++.++|--.++||+++.-+
T Consensus 23 ~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr-~lreel~~lqe~gsyvgev~k~m~ 79 (404)
T KOG0728|consen 23 LQKIEELQLQVAEKTQNLRRLEAQRNELNAKVR-LLREELQLLQEPGSYVGEVVKAMG 79 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCcchHHHHHHhcC
Confidence 34444 35667888899999999999998887 666789999999999999987543
No 26
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=31.52 E-value=66 Score=25.02 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=18.8
Q ss_pred HHHHHHHHHH-HHHHHhHhHHHHHHHHHH
Q 047674 55 SLEAQLSNLQ-NLQLQQRYDREVALAEIE 82 (284)
Q Consensus 55 ~LE~qL~~lq-~lq~qQ~~erd~ala~le 82 (284)
.|+.|++.|+ .+...++.+|+++|++|.
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~ 30 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIR 30 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666664 555666777888887775
No 27
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.01 E-value=93 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 047674 44 ERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEK 91 (284)
Q Consensus 44 ~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~k 91 (284)
..+..+.|++++|+.+++.|+.+. .+|.+.-+|=-.+|-=
T Consensus 5 ~~f~eL~D~~~~L~~n~~~L~~ih--------esL~~FNESFasfLYG 44 (58)
T PF08653_consen 5 PQFAELSDSMETLDKNMEQLNQIH--------ESLSDFNESFASFLYG 44 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 356678999999999999999865 3566666666555543
No 28
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=30.41 E-value=24 Score=25.46 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=10.2
Q ss_pred CCCCCCCeEEEeeCCeeee
Q 047674 242 NVQCPPGKVLVVEGGEARC 260 (284)
Q Consensus 242 ~~qCPPGk~~VleDG~a~C 260 (284)
.-.|+||.++++..|...|
T Consensus 6 S~~C~pG~~k~~~~~~~~C 24 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSC 24 (54)
T ss_dssp S----TTTEEEE--SSS-S
T ss_pred CCCCCCCCEECccCCCcce
Confidence 3579999999998888865
No 29
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=29.50 E-value=2.2e+02 Score=23.93 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=26.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhcC---CcHHHHHHH
Q 047674 69 QQRYDREVALAEIEFSRKMLLEKLKEYRG---EDLEVIHEA 106 (284)
Q Consensus 69 qQ~~erd~ala~le~SR~~Ll~kl~e~~G---k~~~Vi~Ea 106 (284)
+|..+=++-|++|++.|..|...+..+.+ .+|.++++.
T Consensus 86 ~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~c~~~~~l 126 (135)
T PRK10227 86 EKVAEIERHIEELQSMRDQLLALANACPGDDSADCPIIENL 126 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHH
Confidence 45556666778899999888888776654 345555543
No 30
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=28.10 E-value=42 Score=31.02 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=17.4
Q ss_pred CCCCCCCCeEEEee-CCeeeeEe
Q 047674 241 FNVQCPPGKVLVVE-GGEARCIV 262 (284)
Q Consensus 241 ~~~qCPPGk~~Vle-DG~a~CvV 262 (284)
..-+|+||.|+|++ .|..+|.+
T Consensus 64 al~~~~~GdVLVid~~g~~~~A~ 86 (210)
T COG0684 64 ALEQAGPGDVLVIDGGGDLRRAL 86 (210)
T ss_pred eeecCCCCCEEEEeCCCCcceee
Confidence 46799999999999 55557765
No 31
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.95 E-value=2.5e+02 Score=29.15 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 44 ERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 44 ~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
..+......++.++.+|..++...+.++.+....-++++.-|....+|++...
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~ 105 (475)
T PRK10361 53 TQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMI 105 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666666666555566666666666666666555555433
No 32
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.05 E-value=1.5e+02 Score=21.94 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047674 47 LSIHQALESLEAQLSNLQNLQLQ 69 (284)
Q Consensus 47 ~~IrdALe~LE~qL~~lq~lq~q 69 (284)
.+.|.-+++||.||..||.--+|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999974443
No 33
>PF10076 DUF2313: Uncharacterized protein conserved in bacteria (DUF2313); InterPro: IPR018755 Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins, including Gp48 from Bacteriophage Mu and other Mu-like prophages such as FluMu.
Probab=26.30 E-value=3e+02 Score=23.62 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-----HHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCC-c
Q 047674 40 CEESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVAL-----AEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGE-T 113 (284)
Q Consensus 40 ~~Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~al-----a~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage-~ 113 (284)
..++..|-.+.+++++|.+|+---.+...-.+.||.--| .-||+-|..++.|+..--|-+...+.+.++-.|. .
T Consensus 25 ~a~~~el~~~~~~~~~l~~e~f~~Tat~~L~~wE~~lgi~~~~~~tle~RR~~i~~k~~~~~~~T~~~l~~~a~~~G~~~ 104 (179)
T PF10076_consen 25 EAEGPELDRLDDRADDLLDEQFPSTATWGLPRWERMLGIPPNPTDTLEERRARILAKLNSKGPYTIAYLEQLANSLGYGN 104 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHccCCcCHHHHHHHHHHhCCCC
Confidence 457888888999999999998777776666667766544 3689999999999998888899999998877786 5
Q ss_pred cc
Q 047674 114 VQ 115 (284)
Q Consensus 114 ve 115 (284)
++
T Consensus 105 v~ 106 (179)
T PF10076_consen 105 VE 106 (179)
T ss_pred EE
Confidence 44
No 34
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.42 E-value=3.4e+02 Score=28.29 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHhHhHHHHHHHHHHHHHHHHHHHHh
Q 047674 41 EESERLLSIHQALESLEAQLSNLQNL-Q--LQQRYDREVALAEIEFSRKMLLEKLK 93 (284)
Q Consensus 41 ~Ea~sL~~IrdALe~LE~qL~~lq~l-q--~qQ~~erd~ala~le~SR~~Ll~kl~ 93 (284)
.+...|-..-..++.||.||+.|+.= + ++|+.+.+.-|.+||.--..|-.+++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888899999999999732 2 47788889999999998888888873
No 35
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=25.30 E-value=2.4e+02 Score=24.39 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCC
Q 047674 49 IHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGE 112 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage 112 (284)
...-+++|..-|+.+..|+...... ....++..|.-|+.=|+++.||++.--+|.-+|-.+
T Consensus 80 v~~~i~~L~~kLe~~~kl~~~~~~~---~~~~v~~aR~~vv~CL~~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 80 VNEEIEKLREKLEERKKLRELKEEK---NSEEVEKARSAVVRCLRENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc---cchhhHHHHHHHHHHHHHCCCCCCchHHHHHHHHHH
Confidence 3334444444444333333222221 345678899999999999999999999999999654
No 36
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.13 E-value=4.8e+02 Score=24.43 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 047674 44 ERLLSIHQALESLEAQLSNLQNLQLQQRY 72 (284)
Q Consensus 44 ~sL~~IrdALe~LE~qL~~lq~lq~qQ~~ 72 (284)
..|...+..|+..+.+|+.++....+++.
T Consensus 86 ~~l~~a~a~l~~a~a~l~~~~~~~~~~~~ 114 (346)
T PRK10476 86 LTVAQAQADLALADAQIMTTQRSVDAERS 114 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665544333333
No 37
>KOG1869 consensus Splicing coactivator SRm160/300, subunit SRm300 [RNA processing and modification]
Probab=24.98 E-value=1.1e+02 Score=31.35 Aligned_cols=38 Identities=32% Similarity=0.395 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 047674 56 LEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLK 93 (284)
Q Consensus 56 LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~ 93 (284)
+|--|--|+..-.-|.++-+.+++.++++|.+|+.+++
T Consensus 66 IE~K~le~ee~lleqg~seeei~~k~~e~rknl~~~a~ 103 (425)
T KOG1869|consen 66 IELKLLELEESLLEQGLSEEEILSKVQEDRKNLLLRAK 103 (425)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHhhcc
Confidence 55566678888889999999999999999999999998
No 38
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.59 E-value=2.2e+02 Score=32.01 Aligned_cols=50 Identities=22% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 46 LLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 46 L~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
+..-|...+.++.||.-|+.=++|||.+++.++.+-|+-|.-|+.+++..
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r 402 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASR 402 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777889999999999889999999999998888888888877743
No 39
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=23.49 E-value=1.6e+02 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=25.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 63 LQNLQLQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 63 lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
||.|..||-+||..|-++|...+..|.+=.+|.
T Consensus 108 L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ER 140 (152)
T PF15186_consen 108 LKRLREQREMERKEAAFQLQLTQAALQEVQKER 140 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888899899888888777776666553
No 40
>cd00552 RaiA RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).
Probab=23.42 E-value=72 Score=24.04 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047674 45 RLLSIHQALESLEAQLSNL 63 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~l 63 (284)
--.+|.+|++.||.||.-.
T Consensus 72 ~~~Aid~a~~kl~rqL~k~ 90 (93)
T cd00552 72 LYAAIDLAVDKLERQLRKY 90 (93)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999754
No 41
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.18 E-value=2.2e+02 Score=28.59 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCCCCCCeEEEeeCCe-------eeeEeeeeeeccCCC
Q 047674 241 FNVQCPPGKVLVVEGGE-------ARCIVKERVEIPFDS 272 (284)
Q Consensus 241 ~~~qCPPGk~~VleDG~-------a~CvVKERvEiPF~~ 272 (284)
+..-=|||.+.|..||. ..|...|.++|.|..
T Consensus 377 s~~~Ll~G~~~v~~dg~fvG~~~l~~~~~ge~~~l~~G~ 415 (525)
T TIGR02231 377 SDFPLLPGEVNIFRGNGFVGRSHLENVAPGERFELSLGV 415 (525)
T ss_pred CCCcccCCceEEEECCEeEEeeecCCCCCCCeEEEeccC
Confidence 34557899999988875 246667778887764
No 42
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=21.77 E-value=1.7e+02 Score=30.44 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhh
Q 047674 45 RLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAF 109 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aF 109 (284)
-+.++.+|++.|++||.+|..+-.|-|..=|-.+| -+|--|..+.|-.=|
T Consensus 436 d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a---------------~~Gg~C~~l~~~CC~ 485 (561)
T PF00429_consen 436 DLQALEDSISALQEQLTSLAEVVLQNRRALDLLTA---------------EQGGLCAALKEECCF 485 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG---------------GGTSHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhh---------------hcCCchhhhCCceEE
Confidence 44556678888888888887755555544443333 367777777665544
No 43
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=21.37 E-value=2.8e+02 Score=27.04 Aligned_cols=53 Identities=26% Similarity=0.320 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH------H--HHHHHHHHHHHHHHHHHh
Q 047674 41 EESERLLSIHQALESLEAQLSNLQNLQLQQRYDR------E--VALAEIEFSRKMLLEKLK 93 (284)
Q Consensus 41 ~Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~er------d--~ala~le~SR~~Ll~kl~ 93 (284)
.+.--|..|||++-.|-.-++.++.++++++..- + .-|+-||.+=..|-.||.
T Consensus 75 s~~t~ls~~r~~~~tL~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~iet~L~~lh~kld 135 (271)
T PF05549_consen 75 SQGTPLSRIRDALRTLTRLLDSIHSVEQKSELSANTPSSSKLLKKLASIETSLESLHIKLD 135 (271)
T ss_pred hhcchHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCccchhHHHHHHHHHhHHHHHHHHHH
Confidence 3777899999999999999999999888776543 3 335555555555555543
No 44
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=21.05 E-value=4.1e+02 Score=20.78 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 047674 45 RLLSIHQALESLEA----QLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLK 93 (284)
Q Consensus 45 sL~~IrdALe~LE~----qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~ 93 (284)
+|..|++.|+..+. .+........+|..+=+.-++++.+....+..++.
T Consensus 59 ~L~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~ 111 (124)
T COG0789 59 SLAEIKELLDLLSAGESIALELRERLLAERLEELEAKIAELQRIEEELRDKLK 111 (124)
T ss_pred CHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665553 34445555556666666666666653333333333
No 45
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=20.78 E-value=56 Score=22.43 Aligned_cols=14 Identities=29% Similarity=0.722 Sum_probs=11.4
Q ss_pred CCCCCCeEEEeeCC
Q 047674 243 VQCPPGKVLVVEGG 256 (284)
Q Consensus 243 ~qCPPGk~~VleDG 256 (284)
=.||+|+++|-.|+
T Consensus 18 G~CP~G~~~i~g~~ 31 (36)
T PF04942_consen 18 GVCPSGYTVITGNG 31 (36)
T ss_pred CcCCCCCEEECCCc
Confidence 47999999987664
No 46
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.76 E-value=3.8e+02 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=17.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047674 68 LQQRYDREVALAEIEFSRKMLLEKLKEYRG 97 (284)
Q Consensus 68 ~qQ~~erd~ala~le~SR~~Ll~kl~e~~G 97 (284)
.+|..+=+.-|++|++.+..|-..+..+.+
T Consensus 85 ~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (127)
T cd04784 85 DEHLAHVRARIAELQALEKQLQALRERCDG 114 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444455566677777666655555443
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.76 E-value=1.7e+02 Score=30.94 Aligned_cols=69 Identities=28% Similarity=0.362 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCCccccCCCccCCCC
Q 047674 50 HQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDNDLLLPPY 125 (284)
Q Consensus 50 rdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage~ve~~~dl~lPPy 125 (284)
|.|=++--.|=+.+..+|.|.|.|+-+|... ...-+-+.|..-+|-.+.-+-||..|.| +.|-++|||=
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~GdKI~LPpS 99 (567)
T PLN03086 31 RKAKEEAAKQREAIEAAQRSRRLDAIEAQIK---ADQQMQESLQAGRGIVFSRIFEAVSFQG----NGDKIKLPPS 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCeEEEEEeeccccCC----CCCeEEcCHH
Confidence 3344444445555555555555554433322 1111222233348889999999999998 6777889984
No 48
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=20.65 E-value=3.2e+02 Score=24.65 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH--HHHhH-hHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 53 LESLEAQLSNLQNL--QLQQR-YDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 53 Le~LE~qL~~lq~l--q~qQ~-~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
++.+|.+.+--+.. +.|+. .++++-=..+..||-+|..|+.||
T Consensus 36 ~~~~e~~~~~~~~~~~~~w~~~~~~~~rkdav~rSravl~Gkv~Eq 81 (156)
T PF10107_consen 36 SETLEAQIEEEYEAELEEWKQKEEKEIRKDAVKRSRAVLKGKVSEQ 81 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHH
Confidence 44556665554433 33332 344444456788999999999876
No 49
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.38 E-value=3.4e+02 Score=22.14 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047674 44 ERLLSIHQALESLEAQLSNLQ 64 (284)
Q Consensus 44 ~sL~~IrdALe~LE~qL~~lq 64 (284)
-+|-+|..+|..||.....|+
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~ 53 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLH 53 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 467788888888888766554
No 50
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.31 E-value=1.7e+02 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 047674 42 ESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIE 82 (284)
Q Consensus 42 Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le 82 (284)
....|..|++=|+.+|.|..-|+.-. ..|...|++|.
T Consensus 158 ~~~~l~~v~~Dl~~ie~QV~~Le~~L----~~k~~eL~~L~ 194 (195)
T PF12761_consen 158 SGKNLKSVREDLDTIEEQVDGLESHL----SSKKQELQQLR 194 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 34567899999999999998888643 34455555554
No 51
>PRK09039 hypothetical protein; Validated
Probab=20.11 E-value=4.8e+02 Score=25.36 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHH
Q 047674 45 RLLSIHQALESLEAQLSNLQNL---QLQQRYDREVALAEIEF 83 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~lq~l---q~qQ~~erd~ala~le~ 83 (284)
-+..++.=++.|+.||..|+.. ..+|-.+.++-|+.|++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777632 23344455555555543
No 52
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=20.07 E-value=3.5e+02 Score=21.52 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 047674 41 EESERLLSIHQALE------SLEAQLSNLQNLQLQQRYDREVALAEI 81 (284)
Q Consensus 41 ~Ea~sL~~IrdALe------~LE~qL~~lq~lq~qQ~~erd~ala~l 81 (284)
+-..-+.+|+|+|. +-|.--+.|+.++.+.+.+++...+++
T Consensus 46 d~~~~~~Gi~dal~~~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~ 92 (124)
T PF01346_consen 46 DIDAFLAGIRDALAGKKPKLSDEEAQEALQAFQQKMQAKQQEKMAKA 92 (124)
T ss_dssp -HHHHHHHHHHHHCTT--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 34456778999992 234445567777777777766554443
Done!