Query 047674
Match_columns 284
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 00:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gp4_A Transcriptional regulat 66.5 26 0.0009 28.3 8.0 45 65-109 84-128 (142)
2 1q08_A Zn(II)-responsive regul 56.7 46 0.0016 24.3 7.2 45 63-107 40-89 (99)
3 1mof_A Moloney murine leukemia 51.5 29 0.00097 25.3 5.1 35 45-79 3-37 (55)
4 2l5g_A GPS2 protein, G protein 50.8 26 0.00089 23.9 4.4 30 40-69 4-33 (38)
5 3e7l_A Transcriptional regulat 46.5 33 0.0011 23.7 4.7 46 49-96 12-57 (63)
6 1y4m_A HERV-FRD_6P24.1 proviru 44.1 35 0.0012 24.6 4.6 33 47-79 3-35 (53)
7 3efg_A Protein SLYX homolog; x 41.3 76 0.0026 23.9 6.3 46 51-96 14-62 (78)
8 3brv_B NF-kappa-B essential mo 36.4 1.3E+02 0.0045 22.8 6.8 41 49-89 24-64 (70)
9 1ntc_A Protein (nitrogen regul 33.3 36 0.0012 25.1 3.4 46 48-95 43-88 (91)
10 3gpv_A Transcriptional regulat 32.5 1.4E+02 0.0049 23.9 7.1 33 65-97 98-130 (148)
11 1eto_A FIS, factor for inversi 31.8 67 0.0023 24.6 4.8 46 49-96 51-96 (98)
12 1q06_A Transcriptional regulat 29.8 1.8E+02 0.006 22.9 7.1 42 65-106 82-126 (135)
13 3na7_A HP0958; flagellar bioge 28.4 2.5E+02 0.0084 24.4 8.4 50 45-94 119-168 (256)
14 3kqg_A Langerin, C-type lectin 27.3 91 0.0031 24.6 5.0 23 45-67 17-39 (182)
15 3e7k_A TRPM7 channel; coiled-c 27.3 91 0.0031 22.8 4.5 26 42-67 21-46 (56)
16 3etw_A Adhesin A; antiparallel 25.5 2.3E+02 0.0078 23.2 7.1 38 48-86 6-43 (119)
17 3ghg_B Fibrinogen beta chain; 25.3 1.5E+02 0.0052 29.2 7.0 29 65-93 145-173 (461)
18 1lr7_A Follistatin, FS1; hepar 23.3 58 0.002 23.3 2.9 41 242-282 6-49 (74)
19 3hh0_A Transcriptional regulat 22.3 1.3E+02 0.0044 24.3 5.0 46 70-115 88-139 (146)
20 1umq_A Photosynthetic apparatu 21.7 70 0.0024 24.0 3.1 23 74-96 57-79 (81)
21 3uux_B Mitochondrial division 21.6 2.6E+02 0.0089 25.5 7.3 71 42-112 147-226 (242)
22 1q5x_A Regulator of RNAse E ac 21.3 46 0.0016 27.7 2.2 21 242-262 52-73 (161)
23 3q0x_A Centriole protein; cent 21.1 2.8E+02 0.0096 24.8 7.4 47 42-95 169-215 (228)
24 4h22_A Leucine-rich repeat fli 21.1 2.3E+02 0.008 22.8 6.2 56 48-122 34-89 (103)
25 1nxj_A Probable S-adenosylmeth 20.3 48 0.0016 28.5 2.2 21 242-262 81-102 (183)
No 1
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=66.50 E-value=26 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhh
Q 047674 65 NLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAF 109 (284)
Q Consensus 65 ~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aF 109 (284)
.+-.+|..+=+.-|++|++.+..|-.++..|.+..-..-.|...|
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344566677777889999999999999999998877777777664
No 2
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=56.70 E-value=46 Score=24.30 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCC-----cHHHHHHHH
Q 047674 63 LQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGE-----DLEVIHEAS 107 (284)
Q Consensus 63 lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk-----~~~Vi~Ea~ 107 (284)
+..+-.+|+.+=+.-+++|++.+..|-.++..|.+. .|.+++...
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~~~C~i~~~l~ 89 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSILEALE 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHhc
Confidence 344445566666667788999999999999988873 366666543
No 3
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=51.48 E-value=29 Score=25.26 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047674 45 RLLSIHQALESLEAQLSNLQNLQLQQRYDREVALA 79 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala 79 (284)
.|-.+++|+..|++||.+|-.+--|-|..=|-.++
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraLD~L~a 37 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFL 37 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998776666665554444
No 4
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.81 E-value=26 Score=23.91 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047674 40 CEESERLLSIHQALESLEAQLSNLQNLQLQ 69 (284)
Q Consensus 40 ~~Ea~sL~~IrdALe~LE~qL~~lq~lq~q 69 (284)
.+|+-+|--+|+-+..||..|+.||.=.+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999874443
No 5
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=46.48 E-value=33 Score=23.65 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 49 IHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
++++++.+|.++ ..+.|+... --+..|-..|.=||..|-.|+++|.
T Consensus 12 l~~~l~~~E~~~-i~~aL~~~~-gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 12 LKEAKKEFEKIF-IEEKLREYD-YDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTT-TCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHHhC-CCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 456788888765 233333322 2344555678889999999999884
No 6
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=44.13 E-value=35 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047674 47 LSIHQALESLEAQLSNLQNLQLQQRYDREVALA 79 (284)
Q Consensus 47 ~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala 79 (284)
-.|++|+..|++||.+|-.+--|-|..=|-.++
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraLDlL~a 35 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTA 35 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999877776666555544
No 7
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.30 E-value=76 Score=23.85 Aligned_cols=46 Identities=26% Similarity=0.166 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 51 QALESLEAQLSNLQNLQ---LQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 51 dALe~LE~qL~~lq~lq---~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
+-|++||.+|++....- ++.-++.+..|.+|..-=..|..||++-.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778888888877432 55666677778888888888889988643
No 8
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=36.37 E-value=1.3e+02 Score=22.82 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 047674 49 IHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLL 89 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll 89 (284)
||..=..|-.-.+-|+..|--|+-||+-...++.+.|..++
T Consensus 24 lkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~ 64 (70)
T 3brv_B 24 IRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444567777888999999999999999999999998665
No 9
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.25 E-value=36 Score=25.12 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 48 SIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 48 ~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
.++++++.+|.++ ..+.|+.. .-.+..|-..|.-||..|-.||++|
T Consensus 43 ~l~~~l~~~E~~~-i~~aL~~~-~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 43 LLSEAQPELERTL-LTTALRHT-QGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHT-TTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHHHHHh-CCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3566777777765 22333322 2233345566788999999999987
No 10
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.54 E-value=1.4e+02 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047674 65 NLQLQQRYDREVALAEIEFSRKMLLEKLKEYRG 97 (284)
Q Consensus 65 ~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~G 97 (284)
.+-.+|+.+=+.-+++|++.+..|-.++..|+.
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666777888888888888877753
No 11
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=31.82 E-value=67 Score=24.63 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 49 IHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
.+++|+.+|.++- .+.|+. -.-.+..|-..|.-||..|-.||++|.
T Consensus 51 l~~~l~~~Er~~I-~~aL~~-~~gn~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 51 YELVLAEVEQPLL-DMVMQY-TLGNQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp HHHHHHHHHHHHH-HHHHHH-TTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHHHHH-hCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3455666776642 122222 222344555678889999999999873
No 12
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=29.76 E-value=1.8e+02 Score=22.93 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCC---cHHHHHHH
Q 047674 65 NLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGE---DLEVIHEA 106 (284)
Q Consensus 65 ~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk---~~~Vi~Ea 106 (284)
.+-.+|..+=+.-+++|++.+..|-..+..+.|. +|.++++.
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~c~~l~~l 126 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADCPIIENL 126 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHH
Confidence 3344555555666788888888888888777764 35555544
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.40 E-value=2.5e+02 Score=24.38 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 047674 45 RLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKE 94 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e 94 (284)
.+-.....++.++.++..++.--...+.++++++++|+.-...|..+-.+
T Consensus 119 ~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~ 168 (256)
T 3na7_A 119 EIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKED 168 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666655666677777777777766666555443
No 14
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.32 E-value=91 Score=24.58 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047674 45 RLLSIHQALESLEAQLSNLQNLQ 67 (284)
Q Consensus 45 sL~~IrdALe~LE~qL~~lq~lq 67 (284)
.+..+.+.++.|+.+|..|+.+.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666665543
No 15
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=27.29 E-value=91 Score=22.77 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047674 42 ESERLLSIHQALESLEAQLSNLQNLQ 67 (284)
Q Consensus 42 Ea~sL~~IrdALe~LE~qL~~lq~lq 67 (284)
-.+.-+.|.++|-.|+.||.-||+|-
T Consensus 21 vnekv~~ik~sL~~LD~~lg~Lqdls 46 (56)
T 3e7k_A 21 VGDRVNYIKRSLQSLDSQIGHLQDLS 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677889999999999999988763
No 16
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=25.52 E-value=2.3e+02 Score=23.16 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 047674 48 SIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRK 86 (284)
Q Consensus 48 ~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~ 86 (284)
.|-..|+.||.||.-|... -.|||-.+.++|+-.+.+.
T Consensus 6 ~i~~~l~~Leae~q~L~~~-E~qry~~eka~AE~A~~~L 43 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQ-EEARFNEERAQADAARQAL 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4566789999999888864 3455555555555444433
No 17
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=25.29 E-value=1.5e+02 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 047674 65 NLQLQQRYDREVALAEIEFSRKMLLEKLK 93 (284)
Q Consensus 65 ~lq~qQ~~erd~ala~le~SR~~Ll~kl~ 93 (284)
+|+.|++|+++..+..++.+=..|-.-|.
T Consensus 145 mle~~~~~~~~~~~~~~~~~i~~l~~~~~ 173 (461)
T 3ghg_B 145 ELEKHQLYIDETVNSNIPTNLRVLRSILE 173 (461)
T ss_dssp HHHHHHTHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHHH
Confidence 78899999999888887777666544443
No 18
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose octasulphate, hormone/growth factor complex; HET: SO4; 1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB: 1lr8_A* 1lr9_A
Probab=23.29 E-value=58 Score=23.28 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEe-eCCeeeeEeeeeeecc--CCCCCCCCCccCC
Q 047674 242 NVQCPPGKVLVV-EGGEARCIVKERVEIP--FDSVAVKPDINYG 282 (284)
Q Consensus 242 ~~qCPPGk~~Vl-eDG~a~CvVKERvEiP--F~~~v~~Pdv~YG 282 (284)
.+.|++|++=++ .+|+++|+=...=.-. |..|=++=.+.|.
T Consensus 6 ~~~C~~g~~C~~~~~~~~~C~C~~~C~~~~~~~pVCGsDG~TY~ 49 (74)
T 1lr7_A 6 NVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYR 49 (74)
T ss_dssp TCCCCTTEEEEECTTSCEEEEECCCGGGCCCCSCEEETTSCEES
T ss_pred CCcCcCCCEEeECCCCCeeecCCCCCCCCcCCCceeCCCCCCcC
Confidence 478999998888 5899999864322211 5555555555553
No 19
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.25 E-value=1.3e+02 Score=24.26 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhcCC---cHHH---HHHHHhhhCCccc
Q 047674 70 QRYDREVALAEIEFSRKMLLEKLKEYRGE---DLEV---IHEASAFAGETVQ 115 (284)
Q Consensus 70 Q~~erd~ala~le~SR~~Ll~kl~e~~Gk---~~~V---i~Ea~aFage~ve 115 (284)
|+.+=+.-+++|++.+..|-.++..|.+. ++.+ +-++++|-||.-+
T Consensus 88 q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~~~~~~ 139 (146)
T 3hh0_A 88 QREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWEKENKE 139 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHcccccc
Confidence 34444555677788888887888877665 3444 3447778777543
No 20
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.74 E-value=70 Score=23.95 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 047674 74 REVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 74 rd~ala~le~SR~~Ll~kl~e~~ 96 (284)
+..|-..|.-||..|-.||++|.
T Consensus 57 ~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 57 VSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 44556778999999999999874
No 21
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.55 E-value=2.6e+02 Score=25.49 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCc------HHHHHHHHhhhCC
Q 047674 42 ESERLLSIHQALESLEAQLSNLQN---LQLQQRYDREVALAEIEFSRKMLLEKLKEYRGED------LEVIHEASAFAGE 112 (284)
Q Consensus 42 Ea~sL~~IrdALe~LE~qL~~lq~---lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~------~~Vi~Ea~aFage 112 (284)
..-||...+.--+++..+|+.|.. +-+---.|=|.=|++|...|.+++.||+...-.+ +..|++=+.|+-|
T Consensus 147 ~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 147 SSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888999999999873 3344455667789999999999999999766544 4456666677644
No 22
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=21.26 E-value=46 Score=27.66 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=16.2
Q ss_pred CCCCCCCeEEEeeC-CeeeeEe
Q 047674 242 NVQCPPGKVLVVEG-GEARCIV 262 (284)
Q Consensus 242 ~~qCPPGk~~VleD-G~a~CvV 262 (284)
.-+|+||.++|++. |..+|.+
T Consensus 52 l~~~~~G~VlVvd~~g~~~~a~ 73 (161)
T 1q5x_A 52 LEQNGRGRVLVVDGGGSVRRAL 73 (161)
T ss_dssp HTSCCTTEEEEEECTTCSSSEE
T ss_pred HhhcCCCCEEEEECCCCCCcee
Confidence 45899999999994 5666654
No 23
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.09 E-value=2.8e+02 Score=24.78 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 047674 42 ESERLLSIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEY 95 (284)
Q Consensus 42 Ea~sL~~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~ 95 (284)
=+.++..++.-|..|++.|+-.|. |+++.-|.|++-|..+++--..|
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~-------e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRD-------DRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888877766554 88888899999999887644434
No 24
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.07 E-value=2.3e+02 Score=22.75 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHhhhCCccccCCCccC
Q 047674 48 SIHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRGEDLEVIHEASAFAGETVQHDNDLLL 122 (284)
Q Consensus 48 ~IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~Gk~~~Vi~Ea~aFage~ve~~~dl~l 122 (284)
-.+|-||++|.++..||. .--|.+|. +.++| +.+.+...-+++.-+.+...|+|+.
T Consensus 34 lLKD~LEe~eE~~aql~R-------------e~~eK~re--~e~~K----r~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRR-------------QYEEKNKE--FEREK----HAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998885 11111222 22222 3455566666666666777777664
No 25
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=20.30 E-value=48 Score=28.47 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.3
Q ss_pred CCCCCCCeEEEee-CCeeeeEe
Q 047674 242 NVQCPPGKVLVVE-GGEARCIV 262 (284)
Q Consensus 242 ~~qCPPGk~~Vle-DG~a~CvV 262 (284)
.-+|+||.|+|++ .|..+|.+
T Consensus 81 l~~~~~G~VlVvd~~g~~~~A~ 102 (183)
T 1nxj_A 81 LSQPSAGGVLVIDGAGSLHTAL 102 (183)
T ss_dssp HHSCCSSCEEEEECTTCCSSEE
T ss_pred HHhcCCCCEEEEECCCCCCcee
Confidence 3479999999999 45666654
Done!