Query 047674
Match_columns 284
No_of_seqs 42 out of 44
Neff 3.2
Searched_HMMs 13730
Date Tue Mar 26 00:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1joga_ a.24.16.2 (A:) Hypothe 48.2 46 0.0033 25.3 8.5 63 46-109 2-84 (135)
2 d2d6fa1 b.38.3.1 (A:2-73) Glut 46.9 2 0.00015 31.0 0.2 45 95-139 2-54 (72)
3 d1umqa_ a.4.1.12 (A:) Photosyn 43.8 13 0.00096 24.6 4.0 43 53-97 17-59 (60)
4 d1ntca_ a.4.1.12 (A:) DNA-bind 38.1 13 0.00093 25.9 3.4 46 49-96 44-89 (91)
5 d1lr1a_ a.155.1.1 (A:) H1 prot 31.4 18 0.0013 24.8 3.1 38 44-81 5-50 (57)
6 d2ncda_ c.37.1.9 (A:) Kinesin 28.0 26 0.0019 29.9 4.3 36 63-98 8-46 (368)
7 d1q6ha_ d.26.1.1 (A:) Peptidyl 26.8 1.2E+02 0.0087 23.6 8.0 34 45-78 40-82 (210)
8 d1lr7a1 g.3.11.3 (A:64-88) Dom 25.8 22 0.0016 20.8 2.3 20 242-261 5-25 (26)
9 d1bg1a1 a.47.1.1 (A:136-321) S 25.1 1.2E+02 0.0086 24.1 7.7 45 73-117 67-124 (186)
10 d3bpse1 g.3.11.1 (E:293-332) L 22.6 16 0.0012 22.7 1.3 15 243-260 25-39 (40)
11 d1zjka2 g.18.1.1 (A:311-363) C 22.4 12 0.00091 24.2 0.8 14 242-255 15-28 (53)
No 1
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=48.18 E-value=46 Score=25.27 Aligned_cols=63 Identities=24% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHH----HHHHHHHHHHhhhcC---------CcHHHHHH
Q 047674 46 LLSIHQALESLEAQLSNLQNLQ-------LQQRYDREVALAEIE----FSRKMLLEKLKEYRG---------EDLEVIHE 105 (284)
Q Consensus 46 L~~IrdALe~LE~qL~~lq~lq-------~qQ~~erd~ala~le----~SR~~Ll~kl~e~~G---------k~~~Vi~E 105 (284)
|.+.+.|+.+||.-|..|+... .-+...|+.+|.+-| .|+++|=.-|+ |+| -+-++|.|
T Consensus 2 l~~l~ka~~~l~~Al~~~~~~~~~~~~~~~~~d~i~dg~IqrFE~t~ElaWK~lK~~L~-~~g~~~~~~~~~spr~~~r~ 80 (135)
T d1joga_ 2 LNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQ-QDAINTDDIGAYGFKDILRE 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccccccCHHHHHHH
Confidence 5567788888888888776421 123567888898875 46666555444 777 45689999
Q ss_pred HHhh
Q 047674 106 ASAF 109 (284)
Q Consensus 106 a~aF 109 (284)
|...
T Consensus 81 A~~~ 84 (135)
T d1joga_ 81 ALRF 84 (135)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 2
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=46.92 E-value=2 Score=30.96 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=35.2
Q ss_pred hcCCcHHHHHHHHhhhCCccccC-C-----CccCCCCCCCCCCCccc--cCcc
Q 047674 95 YRGEDLEVIHEASAFAGETVQHD-N-----DLLLPPYPNRLPLSLTL--ENGY 139 (284)
Q Consensus 95 ~~Gk~~~Vi~Ea~aFage~ve~~-~-----dl~lPPy~~~~~~s~~~--d~~~ 139 (284)
|+|+-.+...+...=+|+.|+=. + ++++|||-+.-++-+++ |++|
T Consensus 2 Y~gk~~~fL~~~~i~vGD~V~i~~~~~~~eGilmP~~e~sd~~~iVlKL~nGY 54 (72)
T d2d6fa1 2 YQGRARKFLESASIDVGDMVLVEKPDVTYEGMVLDRADDADDRHIVLKLENGY 54 (72)
T ss_dssp CCHHHHHHHHTTTCCTTCEEEEECSSCEEEEEECCCCTTSCSSEEEEECTTSC
T ss_pred cchHHHHHHHHcCCCCCCEEEEEECCcEEEEEEcCCcccCCCCEEEEEecCce
Confidence 77888888888888889988753 2 36789998777777775 9998
No 3
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=43.82 E-value=13 Score=24.56 Aligned_cols=43 Identities=7% Similarity=0.016 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhcC
Q 047674 53 LESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYRG 97 (284)
Q Consensus 53 Le~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~G 97 (284)
|+++|.++ ..+.|+ +-.-.+-.|-..|.=||..|-.||++|.-
T Consensus 17 l~~~Er~~-I~~aL~-~~~gn~~~aA~~LGIsR~TL~rkmkky~~ 59 (60)
T d1umqa_ 17 ADRVRWEH-IQRIYE-MCDRNVSETARRLNMHRRTLQRILAKRSP 59 (60)
T ss_dssp HHHHHHHH-HHHHHH-HTTSCHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred HHHHHHHH-HHHHHH-HhcCcHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 45566653 233333 33334556668899999999999999974
No 4
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=38.14 E-value=13 Score=25.89 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhc
Q 047674 49 IHQALESLEAQLSNLQNLQLQQRYDREVALAEIEFSRKMLLEKLKEYR 96 (284)
Q Consensus 49 IrdALe~LE~qL~~lq~lq~qQ~~erd~ala~le~SR~~Ll~kl~e~~ 96 (284)
..++++.+|.+| .-+.|+ +..--+-.|-..|.=||..|-.|||+|.
T Consensus 44 l~~~~~~~E~~l-I~~aL~-~~~Gn~~~AA~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 44 LSEAQPELERTL-LTTALR-HTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHHHHH-HHHHHH-HTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHH-HhCCcHHHHHHHHCCCHHHHHHHHHHHC
Confidence 567777888776 222333 2233334455778889999999999883
No 5
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=31.43 E-value=18 Score=24.81 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=26.7
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 047674 44 ERLLSIHQ--------ALESLEAQLSNLQNLQLQQRYDREVALAEI 81 (284)
Q Consensus 44 ~sL~~Ird--------ALe~LE~qL~~lq~lq~qQ~~erd~ala~l 81 (284)
+.|+.||. .||.||..|+-|..+=.-.|-+-.++.+++
T Consensus 5 K~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv~Erreee~~~~~e~ 50 (57)
T d1lr1a_ 5 KILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEV 50 (57)
T ss_dssp HHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666664 589999999999987766665555554444
No 6
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=28.05 E-value=26 Score=29.93 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHH---HHHHHHHHHhhhcCC
Q 047674 63 LQNLQLQQRYDREVALAEIEF---SRKMLLEKLKEYRGE 98 (284)
Q Consensus 63 lq~lq~qQ~~erd~ala~le~---SR~~Ll~kl~e~~Gk 98 (284)
|+..-.|++.|.+++..+|.+ .|+-|...|.+.+|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn 46 (368)
T d2ncda_ 8 LLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGN 46 (368)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 444556667777777777777 677888888888985
No 7
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}
Probab=26.75 E-value=1.2e+02 Score=23.59 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=17.4
Q ss_pred HHHHHHHHH--------HHHHHHHHHHH-HHHHHhHhHHHHHH
Q 047674 45 RLLSIHQAL--------ESLEAQLSNLQ-NLQLQQRYDREVAL 78 (284)
Q Consensus 45 sL~~IrdAL--------e~LE~qL~~lq-~lq~qQ~~erd~al 78 (284)
=+-+|+||| +..+..|..+| .++.+++.++....
T Consensus 40 ~~~Gl~Dal~gk~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 82 (210)
T d1q6ha_ 40 LIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDA 82 (210)
T ss_dssp HHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 345778887 34444454443 34444444444433
No 8
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.80 E-value=22 Score=20.83 Aligned_cols=20 Identities=40% Similarity=0.870 Sum_probs=14.6
Q ss_pred CCCCCCCeE-EEeeCCeeeeE
Q 047674 242 NVQCPPGKV-LVVEGGEARCI 261 (284)
Q Consensus 242 ~~qCPPGk~-~VleDG~a~Cv 261 (284)
.+.|-|||. .+-.-...|||
T Consensus 5 nvdcgpgk~c~mnrrnkprcv 25 (26)
T d1lr7a1 5 NVDCGPGKKCRMNKKNKPRCV 25 (26)
T ss_dssp TCCCCTTEEEEECTTSCEEEE
T ss_pred ccccCCCccccccccCCCccc
Confidence 689999994 44446677886
No 9
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.13 E-value=1.2e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcHH----HHH---------HHHhhhCCccccC
Q 047674 73 DREVALAEIEFSRKMLLEKLKEYRGEDLE----VIH---------EASAFAGETVQHD 117 (284)
Q Consensus 73 erd~ala~le~SR~~Ll~kl~e~~Gk~~~----Vi~---------Ea~aFage~ve~~ 117 (284)
+-+.-+..|.+.|.-++.|+++.-+.--. +|+ -.+|+.|.|.+..
T Consensus 67 ~l~~~~~~L~~~R~~l~~k~~~~l~~l~~lq~~ll~~eL~~WKrrQQlA~iG~P~~~~ 124 (186)
T d1bg1a1 67 QLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNIC 124 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 33455678999999999999987665422 332 2456667776544
No 10
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.59 E-value=16 Score=22.73 Aligned_cols=15 Identities=47% Similarity=0.935 Sum_probs=10.7
Q ss_pred CCCCCCeEEEeeCCeeee
Q 047674 243 VQCPPGKVLVVEGGEARC 260 (284)
Q Consensus 243 ~qCPPGk~~VleDG~a~C 260 (284)
=.||||+.|+ ||. .|
T Consensus 25 C~C~~Gy~L~--d~~-tC 39 (40)
T d3bpse1 25 CLCPDGFQLV--AQR-RC 39 (40)
T ss_dssp EECCTTCCEE--TTT-EE
T ss_pred EECCCCCEEC--CCC-cC
Confidence 4799999884 653 44
No 11
>d1zjka2 g.18.1.1 (A:311-363) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.41 E-value=12 Score=24.16 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.6
Q ss_pred CCCCCCCeEEEeeC
Q 047674 242 NVQCPPGKVLVVEG 255 (284)
Q Consensus 242 ~~qCPPGk~~VleD 255 (284)
.+.|.|||.|+.++
T Consensus 15 ~f~C~~GY~L~~~~ 28 (53)
T d1zjka2 15 SIFCETGYELLQGH 28 (53)
T ss_dssp EEEECTTEEEEETT
T ss_pred EEEeCCCCeecccc
Confidence 68999999998544
Done!