Citrus Sinensis ID: 047675

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-
SILLLVGVCIGIIVGASSKRSNKNESNAVSANSKAVAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN
ccHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHccccccHHHHHHHHccccHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHccccccccEEEEEEcEEEEEEEEEEccccEEEEEccccccEEEEEcccccccccccEEEEEEEEEEccccEEEEccEEEEEEccEEccccEEEEEcEEEEEccccccccEEEEcccccccccccEEEEccEEccccccccccccccEEEcccccccEEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
cEEEEEEEEEEEEEEEcccccccccccccccHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccHHHEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccccc
SILLLVGVCIGIIVGasskrsnknesnavsaNSKAVAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEgaknnsgfildtkgAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQactdgvtqpelknqtigglqnapqltSNALAIVSAISGIlntfhipqnMAATSRRLLHAhktgngeypewlsesdrdwqYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNvfmygdgprktiftgrknnreristykTASFYILYVQTHCQLYRNcvisgtvdfifgdssTVIQNSLIiatkpmynpkntvtahgledrretTGLIiqncrivpeellypvrfkiptylgrpwklySRTIIMEttmgdfiqpagwlewqgnfppdtlyhaehanmgpraatdkrvnwkgfdlmtnrneaplyaagtfiqgnawlkdtggtyflglkn
SILLLVGVCIGIIvgasskrsnknesnavsansKAVAAVCASTDYRQQCIERVkpaaksktaTLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSAlaaypknlnGRYITYVKAGSYDEYITVTRKQvnvfmygdgprktiftgrknnreriSTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLiiatkpmynpkNTVTAHGLEDRRETTGliiqncrivpeellypvrfkiptylgrpwkLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN
SilllvgvcigiivgASSKRsnknesnavsanskavaavcasTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN
*ILLLVGVCIGIIVG********************VAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTK*************MNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLG***
SILLLVGVCIGII************************AVCASTDYRQQCI****************FIQAATKAIINMV*******************AKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPEL**********APQLTSNALA********************************NGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLK*
SILLLVGVCIGIIVGASSK******************AVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN
SILLLVGVCIGIIVGASSK********AVSANSKAVAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SILLLVGVCIGIIVGASSKRSNKNESNAVSANSKAVAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAKTELHGAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKTASFYILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query471 2.2.26 [Sep-21-2011]
Q3E8Z8 732 Putative pectinesterase/p yes no 0.987 0.635 0.339 2e-83
Q8GX86 669 Probable pectinesterase/p no no 0.991 0.698 0.319 3e-76
Q7Y201614 Probable pectinesterase/p no no 0.908 0.697 0.348 6e-72
Q43143583 Pectinesterase/pectineste N/A no 0.980 0.792 0.314 3e-71
Q9FJ21571 Probable pectinesterase/p no no 0.957 0.789 0.325 3e-71
Q9SMY6609 Putative pectinesterase/p no no 0.900 0.696 0.342 5e-71
P83948584 Pectinesterase 3 OS=Citru no no 0.972 0.784 0.324 1e-70
Q9FK05587 Probable pectinesterase/p no no 0.976 0.783 0.313 4e-69
O04886584 Pectinesterase 1 OS=Citru no no 0.963 0.777 0.325 6e-68
Q8GXA1568 Probable pectinesterase/p no no 0.949 0.786 0.325 8e-68
>sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/545 (33%), Positives = 270/545 (49%), Gaps = 80/545 (14%)

Query: 1   SILLLVGVCIGIIVGASSKRSNKNESNAVSANSKAVAAVCASTDYRQQCIERVKPAAKSK 60
           S +LL+ + + + +G S  +S+      ++ + KA+  VCA TDY++ C + ++  AK  
Sbjct: 22  SSVLLISMVVAVTIGVSVNKSDNAGDEEITTSVKAIKDVCAPTDYKETCEDTLRKDAKDT 81

Query: 61  TATLKEFIQAATKAIINMVEG-AKNNSGFI-LDTKGAQKMAKEDCDESMNFAVEDLQASF 118
           +  L E ++ A  A +  +   AK +   I L      KMA + C E M++A+ +L  SF
Sbjct: 82  SDPL-ELVKTAFNATMKQISDVAKKSQTMIELQKDPRAKMALDQCKELMDYAIGELSKSF 140

Query: 119 SVVAKTELH-------------GAVVSYQQACTDGV--TQPELKNQTIGGLQNAPQLTSN 163
             + K E H              A +S++Q C DG   TQ          L+ A QLT N
Sbjct: 141 EELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHN 200

Query: 164 ALAIVSAISGILNTFHIPQN-------------MAATSRRLLHAHKTGNGEYPEWLSESD 210
            LA+V+ +S  L    IP+              M A +RRLL+A  +     P+ +   D
Sbjct: 201 GLAMVTEMSNYLGQMQIPEMNSRRLLSQEFPSWMDARARRLLNAPMSE--VKPDIVVAQD 258

Query: 211 RDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGR 270
              QYKTI  AL   PK  N  ++ ++K G Y EY+ V R   ++   GDGP KT+ +G 
Sbjct: 259 GSGQYKTINEALNFVPKKKNTTFVVHIKEGIYKEYVQVNRSMTHLVFIGDGPDKTVISGS 318

Query: 271 KNNRERISTYKTASFYI------------------------------------------- 287
           K+ ++ I+TYKTA+  I                                           
Sbjct: 319 KSYKDGITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLADESIFYNCKFDGY 378

Query: 288 ---LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRR 344
              LY  +H Q YR+C ISGT+DF+FGD++ V QN  ++  KP+ N    +TAHG +D R
Sbjct: 379 QDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPR 438

Query: 345 ETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQG 404
           E+TG ++Q C IV E     V+ +  TYLGRPWK YSRTIIM T + DF+ P GW  W G
Sbjct: 439 ESTGFVLQGCTIVGEPDYLAVKEQSKTYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLG 498

Query: 405 NFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGT 464
            F  +TL+++E  N GP AA  KRV W G   +++  E   +    +IQG+AW+   G  
Sbjct: 499 EFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKLSDE-EILKFTPAQYIQGDAWIPGKGVP 557

Query: 465 YFLGL 469
           Y LGL
Sbjct: 558 YILGL 562
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8GX86|PME21_ARATH Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2 Back     alignment and function description
>sp|Q7Y201|PME13_ARATH Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ21|PME58_ARATH Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1 Back     alignment and function description
>sp|Q9SMY6|PME45_ARATH Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXA1|PME23_ARATH Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
225432177570 PREDICTED: putative pectinesterase/pecti 0.995 0.822 0.492 1e-149
297736811 576 unnamed protein product [Vitis vinifera] 0.995 0.814 0.492 1e-149
359480243565 PREDICTED: probable pectinesterase/pecti 0.997 0.831 0.467 1e-135
359479993566 PREDICTED: probable pectinesterase/pecti 0.997 0.830 0.461 1e-131
147818957 1542 hypothetical protein VITISV_040170 [Viti 0.946 0.289 0.467 1e-129
255556580570 Pectinesterase-3 precursor, putative [Ri 0.997 0.824 0.454 1e-126
449463555567 PREDICTED: putative pectinesterase/pecti 0.997 0.828 0.439 1e-126
449467649566 PREDICTED: putative pectinesterase/pecti 0.959 0.798 0.435 1e-119
449463553560 PREDICTED: probable pectinesterase/pecti 0.961 0.808 0.443 1e-119
449481229 583 PREDICTED: putative pectinesterase/pecti 0.953 0.770 0.434 1e-118
>gi|225432177|ref|XP_002275000.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/558 (49%), Positives = 352/558 (63%), Gaps = 89/558 (15%)

Query: 1   SILLLVGVCIGIIVG----ASSKRSNKNESNAVSANSKAVAAVCASTDYRQQCIERVKPA 56
           SI+L+VGV IG+I G       K ++ ++   +S  +KAVAA+C+ TDY+QQCI   +  
Sbjct: 12  SIILVVGVAIGLIAGLHGRGGHKSTDGDDEKVLSTTTKAVAAICSPTDYKQQCISSFQTL 71

Query: 57  AKSKTATLKEFIQAATKAIINMVE---GAKNNSGFILDTKGAQKMAKEDCDESMNFAVED 113
           A + +AT K+F+ AA    +  V+   G   + G   ++ G QKMA EDC + +  A+ +
Sbjct: 72  ANNHSATPKDFLMAAIDITMKEVKEAIGKSESIGLAGNSSGRQKMATEDCQDLLQLAIGE 131

Query: 114 LQASFSVVAKTELH-------------GAVVSYQQACTDGVTQ-PELKNQTIGGLQNAPQ 159
           LQASFS+V    +H              AV+SYQQ+C DG  + PE+K+    GL NA Q
Sbjct: 132 LQASFSMVGDAAMHTINDRAQDLKNWLSAVISYQQSCMDGFDETPEVKSAIQNGLLNATQ 191

Query: 160 LTSNALAIVSAISGILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDW------ 213
           LTSNALAIVS IS IL +F+IP N  ++ RRL  A +  + +YP W S +DR        
Sbjct: 192 LTSNALAIVSEISAILTSFNIPLNFTSSFRRLQEATEESD-QYPSWFSAADRKLLGRVDN 250

Query: 214 ---------------QYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMY 258
                          QYK+IG+ALAAYPKNLNGRY+ YVKAG YDEYIT+ +  VN+FMY
Sbjct: 251 GKVTPNAVVALDGSGQYKSIGAALAAYPKNLNGRYVIYVKAGIYDEYITIEKNLVNIFMY 310

Query: 259 GDGPRKTIFTGRKNNRERISTYKTASFYI------------------------------- 287
           GDGPRKT+ TG+K+  + I+TYKT++F +                               
Sbjct: 311 GDGPRKTMVTGKKSFLDGITTYKTSTFSVIGNGFICKSMGFRNTAGPEGHQAVALRVQSD 370

Query: 288 ---------------LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPK 332
                          LYVQ H Q YRNCVISGTVDFIFGDS+T+IQNSLII  KP+ N +
Sbjct: 371 YSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTVDFIFGDSTTLIQNSLIIVRKPLDNQQ 430

Query: 333 NTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGD 392
           NT+TAHG  ++RETTGL+IQNCRIVPEE L+P RFK P+YLGRPWK YSRT++ME+TMGD
Sbjct: 431 NTITAHGRAEKRETTGLVIQNCRIVPEEKLFPTRFKTPSYLGRPWKAYSRTVVMESTMGD 490

Query: 393 FIQPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFI 452
           FI PAGWL W GNF  DTLY+AE+AN GP A T +RV WKG+ ++TNRNEA  + AG FI
Sbjct: 491 FIHPAGWLPWMGNFALDTLYYAEYANKGPGANTAQRVKWKGYKVITNRNEALQFTAGPFI 550

Query: 453 QGNAWLKDTGGTYFLGLK 470
           QGN WL+ TG  YFLG +
Sbjct: 551 QGNEWLRLTGAPYFLGFR 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736811|emb|CBI26012.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359480243|ref|XP_002275819.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479993|ref|XP_003632385.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255556580|ref|XP_002519324.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223541639|gb|EEF43188.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449463555|ref|XP_004149499.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] gi|449511953|ref|XP_004164099.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449467649|ref|XP_004151535.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463553|ref|XP_004149498.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] gi|449529419|ref|XP_004171697.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449481229|ref|XP_004156120.1| PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query471
TAIR|locus:2066210614 AT2G26450 [Arabidopsis thalian 0.382 0.293 0.491 2.6e-71
TAIR|locus:2143340 732 AT5G27870 [Arabidopsis thalian 0.384 0.247 0.467 3.7e-65
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.386 0.307 0.472 3.8e-64
TAIR|locus:2155884571 AT5G49180 [Arabidopsis thalian 0.360 0.297 0.479 1.6e-63
TAIR|locus:2125959609 AT4G33230 [Arabidopsis thalian 0.382 0.295 0.497 3.3e-63
TAIR|locus:2078047543 AT3G05620 [Arabidopsis thalian 0.369 0.320 0.445 3.7e-62
TAIR|locus:2200076557 PMEPCRA "methylesterase PCR A" 0.401 0.339 0.481 4.8e-62
TAIR|locus:2129865701 AT4G15980 [Arabidopsis thalian 0.367 0.246 0.459 1.9e-61
TAIR|locus:2078057 669 AT3G05610 [Arabidopsis thalian 0.384 0.270 0.428 3.5e-60
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.439 0.334 0.436 4.5e-58
TAIR|locus:2066210 AT2G26450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 456 (165.6 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
 Identities = 90/183 (49%), Positives = 117/183 (63%)

Query:   288 LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETT 347
             LY  TH Q YR+CVI GT+DFIFGD++ + QN  I   K +   KNTVTA G  D+ +TT
Sbjct:   431 LYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTT 490

Query:   348 GLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQG-NF 406
             G ++ NC+I   E L PV+ +  +YLGRPWK YSRTIIME+ + + I P GWL WQ  +F
Sbjct:   491 GFVVHNCKIAANEDLKPVKEEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRWQETDF 550

Query:   407 PPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYF 466
               DTLY+AE+ N G    T  RV W GF ++ N+ EA  Y  G F+QG+ W+  +G    
Sbjct:   551 AIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQGD-WISASGSPVK 608

Query:   467 LGL 469
             LGL
Sbjct:   609 LGL 611
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2143340 AT5G27870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155884 AT5G49180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125959 AT4G33230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078047 AT3G05620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200076 PMEPCRA "methylesterase PCR A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129865 AT4G15980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078057 AT3G05610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.824
3rd Layer3.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-131
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-113
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-104
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 9e-98
PLN02314586 PLN02314, PLN02314, pectinesterase 3e-94
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 3e-90
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-86
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-85
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 2e-80
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-77
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 9e-77
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 3e-72
PLN02197588 PLN02197, PLN02197, pectinesterase 4e-68
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 4e-66
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 8e-66
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 2e-65
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-62
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 4e-61
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 5e-60
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-57
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 4e-52
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 9e-47
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-24
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-23
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 5e-20
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-19
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 7e-19
PLN02176340 PLN02176, PLN02176, putative pectinesterase 8e-17
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 2e-16
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-16
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 1e-15
PLN02773317 PLN02773, PLN02773, pectinesterase 3e-14
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-13
PLN02634359 PLN02634, PLN02634, probable pectinesterase 2e-11
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-06
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 1e-05
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  393 bits (1010), Expect = e-131
 Identities = 198/544 (36%), Positives = 279/544 (51%), Gaps = 98/544 (18%)

Query: 15  GASSKRSNKNESNAVSANSKAVAAVCASTDYRQQCIERVKPAAKSKTAT------LKEFI 68
             SSK S     + VS   K +  VC +T Y+Q C   +K   +   +       LK  I
Sbjct: 61  NNSSKDSPVKSESPVSQVDKIIQTVCNATLYKQTCENTLKKGTEKDPSLAQPKDLLKSAI 120

Query: 69  QAATKAIINMVEGAKNNSGFILDTKGAQKMAKEDCDESMNFAVEDLQASFSVV------- 121
           +A    +  +++   +   F  +    +K A EDC   +  A E+L+AS S +       
Sbjct: 121 KAVNDDLDKVLKKVLS---FKFENP-DEKDAIEDCKLLVEDAKEELKASISRINDEVNKL 176

Query: 122 AKTELH-----GAVVSYQQACTDGVTQPELKNQTIGGLQNAPQLTSNALAIVSAISGILN 176
           AK          AV+SYQ+ C DG  + +LK++     +++ +LTSN+LA+VS+++  L+
Sbjct: 177 AKNVPDLNNWLSAVMSYQETCIDGFPEGKLKSEMEKTFKSSQELTSNSLAMVSSLTSFLS 236

Query: 177 TFHIPQNMAATSRRLLHAHKTG----NGEYPEWLSESDR--------------------- 211
           +F +P      +R LL              P W+S  DR                     
Sbjct: 237 SFSVP---KVLNRHLLAKESNSPSLEKDGIPSWMSNEDRRMLKAVDVDALKPNATVAKDG 293

Query: 212 DWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRK 271
              + TI  ALAA P    GRY+ YVK G YDE +TV +K VNV MYGDG +KTI TG K
Sbjct: 294 SGNFTTISDALAAMPAKYEGRYVIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNK 353

Query: 272 NNRERISTYKTASFYI-------------------------------------------- 287
           N  + + T++TA+F                                              
Sbjct: 354 NFADGVRTFRTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ 413

Query: 288 --LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRE 345
             LY QTH Q YR+CVI+GT+DFIFGD++ + QN LI   KP+ N +NTVTA G  D+ E
Sbjct: 414 DTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFE 473

Query: 346 TTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGN 405
           TTG+++QNCRI P+E L PV+ ++ +YLGRPWK +SRTI+ME+T+ D I P GWL W+G+
Sbjct: 474 TTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDVIDPVGWLRWEGD 533

Query: 406 FPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTY 465
           F  DTLY+AE+ N GP  AT  RV W G+ ++ N+ EA  Y  G F+QG+ W+   G   
Sbjct: 534 FALDTLYYAEYNNKGPGGATTARVKWPGYHVI-NKEEAMKYTVGPFLQGD-WISAIGSPV 591

Query: 466 FLGL 469
            LGL
Sbjct: 592 KLGL 595

Length = 596
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 471
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.91
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.89
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.88
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.1
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.24
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.53
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.75
KOG1777 625 consensus Putative Zn-finger protein [General func 95.62
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 94.57
PRK10531422 acyl-CoA thioesterase; Provisional 94.01
PLN02480343 Probable pectinesterase 93.32
PLN02176340 putative pectinesterase 93.06
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.85
PLN02773317 pectinesterase 92.6
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.24
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 92.06
PLN02665366 pectinesterase family protein 91.77
PLN02916502 pectinesterase family protein 91.24
PLN02671359 pectinesterase 91.04
PLN02634359 probable pectinesterase 90.92
PLN02432293 putative pectinesterase 90.69
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 90.54
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 90.39
PLN02682369 pectinesterase family protein 90.39
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.25
PLN02497331 probable pectinesterase 89.9
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 89.88
PLN02314586 pectinesterase 89.87
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 89.79
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 89.73
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 89.19
PLN02197588 pectinesterase 89.18
PLN02201520 probable pectinesterase/pectinesterase inhibitor 89.16
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 88.94
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 88.87
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.62
PLN02304379 probable pectinesterase 88.17
PLN02484587 probable pectinesterase/pectinesterase inhibitor 86.69
PLN02301548 pectinesterase/pectinesterase inhibitor 86.64
PLN02506537 putative pectinesterase/pectinesterase inhibitor 86.32
PLN02468565 putative pectinesterase/pectinesterase inhibitor 86.12
PLN02313587 Pectinesterase/pectinesterase inhibitor 85.34
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=2.7e-117  Score=949.13  Aligned_cols=463  Identities=36%  Similarity=0.638  Sum_probs=410.0

Q ss_pred             CeEeeeeeeeeeEEEeeecCCCCCCCc--c-cccchHHHHhccCCCCChhhHHHhhcccccccCCCHHHHHHHHHHHHHH
Q 047675            1 SILLLVGVCIGIIVGASSKRSNKNESN--A-VSANSKAVAAVCASTDYRQQCIERVKPAAKSKTATLKEFIQAATKAIIN   77 (471)
Q Consensus         1 ~~~llv~~~i~~~~~~~~~~~~~~~~~--~-~~~~~~~I~~~C~~T~yp~lC~~sL~~~~~s~~~d~~~l~~ial~~a~~   77 (471)
                      |++|||++|||+++++..++.+..+..  . ...++..|+++|+.|+||++|+++|+++|.+..++|++|++++|+++++
T Consensus        38 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iks~C~~T~YP~lC~sSLs~~p~s~~~~p~~L~~~slnvtl~  117 (587)
T PLN02484         38 SIVLLIVSAVAAAIFAGVRAKASGQTSPKSLHRKPTQAISKTCSKTRFPNLCVDSLLDFPGSLTASESDLIHISFNMTLQ  117 (587)
T ss_pred             HHHHHHHHHHhheEEEeccccCCCCCCCCccccChhHHHHHhccCCCChHHHHHHHhhccccccCCHHHHHHHHHHHHHH
Confidence            468899999998888865532211111  1 1224569999999999999999999999887778999999999999999


Q ss_pred             HHHHHHHhhhcc--ccCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhc-------Ccch---hhhHhhhhhccccCCC--
Q 047675           78 MVEGAKNNSGFI--LDTKGAQKMAKEDCDESMNFAVEDLQASFSVVAK-------TELH---GAVVSYQQACTDGVTQ--  143 (471)
Q Consensus        78 ~a~~a~~~i~~L--~~~~~~~~~aL~dC~ely~~avd~L~~s~~al~~-------~d~~---SAAlt~~~TC~DgF~e--  143 (471)
                      ++.++......+  ...+++++.||+||+|+|++++|+|++|+.+|..       .|++   |||||||+||+|||++  
T Consensus       118 ~~~~a~~~s~~l~~~~~~~r~k~AL~DClELlddAid~L~~Sl~~l~~~~~~~~~~DvkTWLSAALTnq~TClDGF~e~~  197 (587)
T PLN02484        118 HFSKALYLSSTISYVQMPPRVRSAYDSCLELLDDSVDALSRALSSVVPSSGGGSPQDVVTWLSAALTNHDTCTEGFDGVN  197 (587)
T ss_pred             HHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHhHHHHHhccHhhHHHHhhccc
Confidence            999987776554  4567889999999999999999999999999874       2566   9999999999999985  


Q ss_pred             -CcchhhhhhhhcchhHHHHHHHHHHHHhhh-cccccCCCCCccchhhhhhccccCCCCCCCccccccCCcc--------
Q 047675          144 -PELKNQTIGGLQNAPQLTSNALAIVSAISG-ILNTFHIPQNMAATSRRLLHAHKTGNGEYPEWLSESDRDW--------  213 (471)
Q Consensus       144 -~~~~~~l~~~~~~~~~L~SnaLAiv~~l~~-~~~~~~~~~~~~~~~r~ll~~~~~~~~~~~~~~~~~d~~~--------  213 (471)
                       ++++++|.+.+.++.||+||||||++.+.. ....+++     +.+|||++++.  .++||+|++..|||+        
T Consensus       198 ~~~vk~~m~~~l~~l~~LtSNALAIi~~~~~~~~~~~~~-----~~~r~l~~~~~--~~~~P~W~~~~dr~ll~~~~~~~  270 (587)
T PLN02484        198 GGEVKDQMTGALKDLSELVSNCLAIFSASNGGDFSGVPI-----QNRRRLLTEEE--DISFPRWLGRRERELLGMPVSAI  270 (587)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-----ccccccccccc--cccCCCCcChhhHHHhhcccccC
Confidence             358889999999999999999999999886 3333222     13688887522  347999999887765        


Q ss_pred             ------------ccccHHHHHhhcCCCCCceEEEEEeCceeEE-EEEEeeecccEEEEecCCCceEEeeccCCCCCCCcc
Q 047675          214 ------------QYKTIGSALAAYPKNLNGRYITYVKAGSYDE-YITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTY  280 (471)
Q Consensus       214 ------------~f~TIq~Ai~a~p~~~~~~~~I~i~~G~Y~E-~v~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~  280 (471)
                                  ||+|||+||+++|.++++|++||||||+|+| +|.|+++||||+|+|+++++|||++++++.++++||
T Consensus       271 ~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~  350 (587)
T PLN02484        271 QADIIVSKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTF  350 (587)
T ss_pred             CceEEECCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCccc
Confidence                        9999999999999998999999999999999 599999999999999999999999999988999999


Q ss_pred             CCcEEE----------------------------------------------EeeeCCceeEeeecEEcCceeeEecCce
Q 047675          281 KTASFY----------------------------------------------ILYVQTHCQLYRNCVISGTVDFIFGDSS  314 (471)
Q Consensus       281 ~saT~~----------------------------------------------Tly~~~gr~yf~~c~I~G~vDfIfG~~~  314 (471)
                      .||||.                                              |||++.|||||++|+|+|+||||||+|+
T Consensus       351 ~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~  430 (587)
T PLN02484        351 HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAA  430 (587)
T ss_pred             ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccce
Confidence            999986                                              9999999999999999999999999999


Q ss_pred             eEEEeeEEEEecCCCCCCeEEEeCCCCCCCCceEEEEEcCeeeccCCCCCcccCCceEEeCCCCCCCeEEEEeccCCCcc
Q 047675          315 TVIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFI  394 (471)
Q Consensus       315 a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~s~vv~~~t~~~~~i  394 (471)
                      ++||+|+|+++++.+++.|+||||+|.++++++||||+||+|++++++.+.+...++||||||++|+|||||+|+|+++|
T Consensus       431 avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I  510 (587)
T PLN02484        431 VVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHI  510 (587)
T ss_pred             eEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCCCceEEEEecccCCeE
Confidence            99999999999887778899999999999999999999999999887655555567999999999999999999999999


Q ss_pred             CCCCccCCCCCCCCCccEEEEeeccCCCCCCCCcccCCCccccCChhhhccccccCcccCCCCCCCCCCcccCCCC
Q 047675          395 QPAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLK  470 (471)
Q Consensus       395 ~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~g~~~l~~~~ea~~y~~~~~~~g~~W~p~~~~~~~~~~~  470 (471)
                      +|+||.+|++.+++++++|+||+|+|||+++++||+|+|++++++++||++|+..+||+|++|+|.+++||.+||.
T Consensus       511 ~p~GW~~W~~~~~~~t~~y~Ey~n~GpGa~~~~Rv~w~~~~~~~~~~ea~~ft~~~fi~g~~W~~~~~vp~~~gl~  586 (587)
T PLN02484        511 HPRGWLEWNTTFALDTLYYGEYMNYGPGSGVGQRVKWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGLS  586 (587)
T ss_pred             cccccCCCCCCCCCCceEEEEeccccCCCCcCCCccCccccccCCHHHHHhhhHHhhcCCCCcCCCCCCCcccCCC
Confidence            9999999999888899999999999999999999999999865478999999999999999999999999999985

>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-58
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 8e-53
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-07
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 6e-07
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 6e-07
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 5e-05
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (569), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 168/313 (53%), Gaps = 46/313 (14%)
Query: 203 PEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGP 262
           P  +  +D    YKT+  A+AA P++   RY+  +KAG Y E + V +K+ N+   GDG 
Sbjct: 7   PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66
Query: 263 RKTIFTGRKNNRERISTYKTAS-------------------------------------F 285
             TI T  KN ++  +T+ +A+                                     F
Sbjct: 67  TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 286 Y---------ILYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVT 336
           Y          LYV ++ Q + NC I+GTVDFIFG+++ V+Q+  I A +P    KN VT
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186
Query: 337 AHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQP 396
           A G  D  + TG++IQ  RI     L PV+   PTYLGRPWK YSRT++M++++ + I P
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 397 AGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNA 456
           AGW  W GNF  DTLY+ E+ N G  AAT  RV WKGF ++T+  EA  +  G+FI G +
Sbjct: 247 AGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGS 306
Query: 457 WLKDTGGTYFLGL 469
           WLK T   + LGL
Sbjct: 307 WLKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query471
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 3e-98
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 3e-98
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 8e-59
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 3e-52
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-31
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 3e-11
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 4e-19
1x91_A153 Invertase/pectin methylesterase inhibitor family p 2e-18
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 2e-10
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  297 bits (762), Expect = 3e-98
 Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 46/302 (15%)

Query: 214 QYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNN 273
            YKT+  A+AA P++   RY+  +KAG Y E + V +K+ N+   GDG   TI T  KN 
Sbjct: 18  DYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV 77

Query: 274 RERISTYKTASFYI---------------------------------------------- 287
           ++  +T+ +A+                                                 
Sbjct: 78  QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDS 137

Query: 288 LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETT 347
           LYV ++ Q + NC I+GTVDFIFG+++ V+Q+  I A +P    KN VTA G  D  + T
Sbjct: 138 LYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNT 197

Query: 348 GLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFP 407
           G++IQ  RI     L PV+   PTYLGRPWK YSRT++M++++ + I PAGW  W GNF 
Sbjct: 198 GIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFA 257

Query: 408 PDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFL 467
            DTLY+ E+ N G  AAT  RV WKGF ++T+  EA  +  G+FI G +WLK T   + L
Sbjct: 258 LDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSL 317

Query: 468 GL 469
           GL
Sbjct: 318 GL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.94
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.94
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.93
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.63
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.27
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.88
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 93.03
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 92.78
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 92.35
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 91.92
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 91.79
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 91.6
2inu_A 410 Insulin fructotransferase; right-handed parallel b 88.96
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=2.7e-78  Score=608.67  Aligned_cols=269  Identities=41%  Similarity=0.749  Sum_probs=252.9

Q ss_pred             CccccccCCccccccHHHHHhhcCCCCCceEEEEEeCceeEEEEEEeeecccEEEEecCCCceEEeeccCCCCCCCccCC
Q 047675          203 PEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYKT  282 (471)
Q Consensus       203 ~~~~~~~d~~~~f~TIq~Ai~a~p~~~~~~~~I~i~~G~Y~E~v~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~~s  282 (471)
                      |..++++|++++|+|||+||+++|.++++|++|+|+||+|+|+|.|++.||||+|+|+++++|+|+++.+..+|++|++|
T Consensus         3 ~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~s   82 (317)
T 1xg2_A            3 ANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRS   82 (317)
T ss_dssp             CSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGG
T ss_pred             ceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccce
Confidence            55778889999999999999999998889999999999999999999999999999999999999999998889999999


Q ss_pred             cEEE----------------------------------------------EeeeCCceeEeeecEEcCceeeEecCceeE
Q 047675          283 ASFY----------------------------------------------ILYVQTHCQLYRNCVISGTVDFIFGDSSTV  316 (471)
Q Consensus       283 aT~~----------------------------------------------Tly~~~gr~yf~~c~I~G~vDfIfG~~~a~  316 (471)
                      +||.                                              |||++.+||||++|+|+|+||||||+|+++
T Consensus        83 atv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~av  162 (317)
T 1xg2_A           83 ATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVV  162 (317)
T ss_dssp             CSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEE
T ss_pred             eEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEE
Confidence            8876                                              999999999999999999999999999999


Q ss_pred             EEeeEEEEecCCCCCCeEEEeCCCCCCCCceEEEEEcCeeeccCCCCCcccCCceEEeCCCCCCCeEEEEeccCCCccCC
Q 047675          317 IQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQP  396 (471)
Q Consensus       317 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~s~vv~~~t~~~~~i~p  396 (471)
                      ||+|+|+++++.+++.++||||+|+++.+++||||+||+|+++++..+.+...++||||||++|+||||++|+|+++|+|
T Consensus       163 f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p  242 (317)
T 1xg2_A          163 FQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP  242 (317)
T ss_dssp             EESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCT
T ss_pred             EeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcccc
Confidence            99999999987767889999999999999999999999999998765544456899999999999999999999999999


Q ss_pred             CCccCCCCCCCCCccEEEEeeccCCCCCCCCcccCCCccccCChhhhccccccCcccCCCCCCCCCCcccCCCCC
Q 047675          397 AGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGLKN  471 (471)
Q Consensus       397 ~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~g~~~l~~~~ea~~y~~~~~~~g~~W~p~~~~~~~~~~~~  471 (471)
                      +||.+|++++++++++|+||+|+|||+++++||+|+++++|++++||++|+..+||+|++|+|.+++||.+||.+
T Consensus       243 ~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~~  317 (317)
T 1xg2_A          243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLYD  317 (317)
T ss_dssp             TCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSCC
T ss_pred             cccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCccccccccC
Confidence            999999998888999999999999999999999999888884679999999999999999999999999999864
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 471
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 8e-82
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 3e-31
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-12
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 6e-16
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 5e-11
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  254 bits (649), Expect = 8e-82
 Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 46/302 (15%)

Query: 214 QYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNN 273
            YKT+  A+AA P++   RY+  +KAG Y E + V +K+ N+   GDG   TI T  KN 
Sbjct: 18  DYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNV 77

Query: 274 RERISTYKTASFYI---------------------------------------------- 287
           ++  +T+ +A+                                                 
Sbjct: 78  QDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDS 137

Query: 288 LYVQTHCQLYRNCVISGTVDFIFGDSSTVIQNSLIIATKPMYNPKNTVTAHGLEDRRETT 347
           LYV ++ Q + NC I+GTVDFIFG+++ V+Q+  I A +P    KN VTA G  D  + T
Sbjct: 138 LYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNT 197

Query: 348 GLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQPAGWLEWQGNFP 407
           G++IQ  RI     L PV+   PTYLGRPWK YSRT++M++++ + I PAGW  W GNF 
Sbjct: 198 GIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFA 257

Query: 408 PDTLYHAEHANMGPRAATDKRVNWKGFDLMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFL 467
            DTLY+ E+ N G  AAT  RV WKGF ++T+  EA  +  G+FI G +WLK T   + L
Sbjct: 258 LDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSL 317

Query: 468 GL 469
           GL
Sbjct: 318 GL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query471
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.92
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.91
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.59
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.12
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.43
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 93.15
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 88.68
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=7.9e-81  Score=622.75  Aligned_cols=267  Identities=44%  Similarity=0.772  Sum_probs=254.4

Q ss_pred             CCccccccCCccccccHHHHHhhcCCCCCceEEEEEeCceeEEEEEEeeecccEEEEecCCCceEEeeccCCCCCCCccC
Q 047675          202 YPEWLSESDRDWQYKTIGSALAAYPKNLNGRYITYVKAGSYDEYITVTRKQVNVFMYGDGPRKTIFTGRKNNRERISTYK  281 (471)
Q Consensus       202 ~~~~~~~~d~~~~f~TIq~Ai~a~p~~~~~~~~I~i~~G~Y~E~v~i~~~k~~i~l~G~~~~~t~I~~~~~~~~g~~t~~  281 (471)
                      -|.-++++|+++||+|||+|||++|.+++.|++|+||||+|+|+|.||++||||+|+|++++.|+|+++.++.++.+|+.
T Consensus         6 ~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~   85 (319)
T d1gq8a_           6 GPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFN   85 (319)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGG
T ss_pred             CCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcccc
Confidence            47788999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEE----------------------------------------------EeeeCCceeEeeecEEcCceeeEecCcee
Q 047675          282 TASFY----------------------------------------------ILYVQTHCQLYRNCVISGTVDFIFGDSST  315 (471)
Q Consensus       282 saT~~----------------------------------------------Tly~~~gr~yf~~c~I~G~vDfIfG~~~a  315 (471)
                      |+||.                                              |||+++|||||++|+|+|+||||||+|++
T Consensus        86 sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a  165 (319)
T d1gq8a_          86 SATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAV  165 (319)
T ss_dssp             GCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEE
T ss_pred             ccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCcee
Confidence            99876                                              99999999999999999999999999999


Q ss_pred             EEEeeEEEEecCCCCCCeEEEeCCCCCCCCceEEEEEcCeeeccCCCCCcccCCceEEeCCCCCCCeEEEEeccCCCccC
Q 047675          316 VIQNSLIIATKPMYNPKNTVTAHGLEDRRETTGLIIQNCRIVPEELLYPVRFKIPTYLGRPWKLYSRTIIMETTMGDFIQ  395 (471)
Q Consensus       316 ~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~s~vv~~~t~~~~~i~  395 (471)
                      +||+|+|+++++..++.++||||+|+++.+++||||+||+|+++++..+.....++||||||++++||||++|+|+++|.
T Consensus       166 ~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~  245 (319)
T d1gq8a_         166 VLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN  245 (319)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccc
Confidence            99999999998877788999999999999999999999999999987665567789999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCccEEEEeeccCCCCCCCCcccCCCcc-ccCChhhhccccccCcccCCCCCCCCCCcccCCC
Q 047675          396 PAGWLEWQGNFPPDTLYHAEHANMGPRAATDKRVNWKGFD-LMTNRNEAPLYAAGTFIQGNAWLKDTGGTYFLGL  469 (471)
Q Consensus       396 p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~g~~-~l~~~~ea~~y~~~~~~~g~~W~p~~~~~~~~~~  469 (471)
                      |+||.+|++.++.++++|+||+|+|||+++++||+|++++ +| +++||++|+..+||+|++|+|.+++||.+||
T Consensus       246 p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l-~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVIT-SSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             TTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECC-CHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeC-CHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999998889999999999999999999999999875 67 9999999999999999999999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure