BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047676
(576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 179/528 (33%), Positives = 250/528 (47%), Gaps = 62/528 (11%)
Query: 75 LAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHXXXXXXXXXXXXXXX 134
L +LD+ N+L G+ I ++LK L++SSN F G IPP
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------------- 262
Query: 135 GSIPLEVGRLSSLNNLTLYANCLEGLIPHSL-GNLTNLAILYLYNNSLSGSIPSEIGNLK 193
+PL+ SL L+L N G IP L G L L L N G++P G+
Sbjct: 263 --LPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 194 FLSRTALSHNKLSGSIP-HSLGNLSNLVILFLDNNLLFGLIPSELRNL-KSLYFLELGNN 251
L ALS N SG +P +L + L +L L N G +P L NL SL L+L +N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 252 KLSGPI-PHFFGNLTN-LGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL 309
SGPI P+ N N L LY+ NN +G IP + N L L+L FN LS +IP SL
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 310 SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLN 368
+L+ L L + N L G IP+E + L L+L N G IP+ L N T+L + L+
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428
N LTG I + NL + LS+N+F G I ++ G C L LD +TN G IP+ +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 429 GYSSQLEVLDLSSNHIVGE-------------------------IPTE-LGKLSFFIKLI 462
S +++N I G+ I +E L +LS
Sbjct: 556 FKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPI 522
+ G SP + LD+S N LS IP+ +G++ L LNL +N S IP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 523 KLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPR 570
++ +L L+ LDLS N L IP + + L +++LS+N+LSG IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 200/410 (48%), Gaps = 37/410 (9%)
Query: 75 LAYLDLWSNQLFGNIPPQIGNISK-LKYLDLSSNSFFGAIPPQIGHXXXXXXXXXXXXXX 133
L LDL N+ G +P + N+S L LDLSSN+F G I P +
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK----------- 390
Query: 134 XGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLK 193
++L L L N G IP +L N + L L+L N LSG+IPS +G+L
Sbjct: 391 -----------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 439
Query: 194 FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253
L L N L G IP L + L L LD N L G IPS L N +L ++ L NN+L
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 254 SGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLT 313
+G IP + G L NL +L + NN SG+IP E+G+ + L L+L N + +IP ++ +
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 314 NLVFLSF-----YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSLVRVRL 367
+ +F Y + + KE L +FQG L L++ +
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL-------EFQGIRSEQLNRLSTRNPCNI 612
Query: 368 NRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE 427
G+ S +F ++ F+D+S+N G I + G P L L+ N+I+G+IP E
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 428 IGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLG 477
+G L +LDLSSN + G IP + L+ ++ L+ N LSG + P++G
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMG 721
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 193/680 (28%), Positives = 288/680 (42%), Gaps = 130/680 (19%)
Query: 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLT----N 57
E H L+ +K L + N L W+ N PC + G+ C +V SI+L+ N
Sbjct: 9 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTC-RDDKVTSIDLSSKPLN 60
Query: 58 IG-----------------------LKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPP--Q 92
+G + G++ F S+ L LDL N L G +
Sbjct: 61 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTS 118
Query: 93 IGNISKLKYLDLSSNS--FFGAIPPQIGHXXXXXXXXXXXXXXXGSIPLEVGRLSS---- 146
+G+ S LK+L++SSN+ F G + + ++ VG + S
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV---VGWVLSDGCG 175
Query: 147 -LNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKL 205
L +L + N + G + + NL L + +N+ S IP +G+ L +S NKL
Sbjct: 176 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 206 SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFF-GNL 264
SG ++ + L +L + +N G IP LKSL +L L NK +G IP F G
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 265 TNLGVLYIYNNLLSGSIPCEIG-------------------------NLKFLSELNLGFN 299
L L + N G++P G ++ L L+L FN
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 300 KLSNSIPVSLSNLT-NLVFLSFYQNSLSGAI-PKEYQNLV-KLTKLLLGNNQFQGPIP-N 355
+ S +P SL+NL+ +L+ L N+ SG I P QN L +L L NN F G IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDF 415
L N + LV + L+ NYL+G I S L + L N GEI + L++L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 416 STNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPK 475
N++TG IPS + + L + LS+N + GEIP +G+L L L+ N SG + +
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 476 LGLLVQLEHLDLSSNRLSNSIPESL--------GNLVK-LHYLNLSNNHFSREI------ 520
LG L LDL++N + +IP ++ N + Y+ + N+ +E
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 521 ----PIKLEELIHLSE---------------------------LDLSYNFLGREIPSQIC 549
I+ E+L LS LD+SYN L IP +I
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 550 IMQSLEKLNLSHNSLSGVIP 569
M L LNL HN +SG IP
Sbjct: 651 SMPYLFILNLGHNDISGSIP 670
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 179/528 (33%), Positives = 250/528 (47%), Gaps = 62/528 (11%)
Query: 75 LAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHXXXXXXXXXXXXXXX 134
L +LD+ N+L G+ I ++LK L++SSN F G IPP
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------------- 265
Query: 135 GSIPLEVGRLSSLNNLTLYANCLEGLIPHSL-GNLTNLAILYLYNNSLSGSIPSEIGNLK 193
+PL+ SL L+L N G IP L G L L L N G++P G+
Sbjct: 266 --LPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 194 FLSRTALSHNKLSGSIP-HSLGNLSNLVILFLDNNLLFGLIPSELRNL-KSLYFLELGNN 251
L ALS N SG +P +L + L +L L N G +P L NL SL L+L +N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 252 KLSGPI-PHFFGNLTN-LGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL 309
SGPI P+ N N L LY+ NN +G IP + N L L+L FN LS +IP SL
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 310 SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLN 368
+L+ L L + N L G IP+E + L L+L N G IP+ L N T+L + L+
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428
N LTG I + NL + LS+N+F G I ++ G C L LD +TN G IP+ +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 429 GYSSQLEVLDLSSNHIVGE-------------------------IPTE-LGKLSFFIKLI 462
S +++N I G+ I +E L +LS
Sbjct: 559 FKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPI 522
+ G SP + LD+S N LS IP+ +G++ L LNL +N S IP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 523 KLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPR 570
++ +L L+ LDLS N L IP + + L +++LS+N+LSG IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 200/410 (48%), Gaps = 37/410 (9%)
Query: 75 LAYLDLWSNQLFGNIPPQIGNISK-LKYLDLSSNSFFGAIPPQIGHXXXXXXXXXXXXXX 133
L LDL N+ G +P + N+S L LDLSSN+F G I P +
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK----------- 393
Query: 134 XGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLK 193
++L L L N G IP +L N + L L+L N LSG+IPS +G+L
Sbjct: 394 -----------NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 194 FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253
L L N L G IP L + L L LD N L G IPS L N +L ++ L NN+L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 254 SGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLT 313
+G IP + G L NL +L + NN SG+IP E+G+ + L L+L N + +IP ++ +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 314 NLVFLSF-----YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSLVRVRL 367
+ +F Y + + KE L +FQG L L++ +
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL-------EFQGIRSEQLNRLSTRNPCNI 615
Query: 368 NRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSE 427
G+ S +F ++ F+D+S+N G I + G P L L+ N+I+G+IP E
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 428 IGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLG 477
+G L +LDLSSN + G IP + L+ ++ L+ N LSG + P++G
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI-PEMG 724
Score = 155 bits (392), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 193/680 (28%), Positives = 288/680 (42%), Gaps = 130/680 (19%)
Query: 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGGRVNSINLT----N 57
E H L+ +K L + N L W+ N PC + G+ C +V SI+L+ N
Sbjct: 12 REIHQLISFKDVLPDKN---LLPDWSSNK----NPCTFDGVTC-RDDKVTSIDLSSKPLN 63
Query: 58 IG-----------------------LKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPP--Q 92
+G + G++ F S+ L LDL N L G +
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLTS 121
Query: 93 IGNISKLKYLDLSSNS--FFGAIPPQIGHXXXXXXXXXXXXXXXGSIPLEVGRLSS---- 146
+G+ S LK+L++SSN+ F G + + ++ VG + S
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV---VGWVLSDGCG 178
Query: 147 -LNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKL 205
L +L + N + G + + NL L + +N+ S IP +G+ L +S NKL
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 206 SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFF-GNL 264
SG ++ + L +L + +N G IP LKSL +L L NK +G IP F G
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 265 TNLGVLYIYNNLLSGSIPCEIG-------------------------NLKFLSELNLGFN 299
L L + N G++P G ++ L L+L FN
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 300 KLSNSIPVSLSNLT-NLVFLSFYQNSLSGAI-PKEYQNLV-KLTKLLLGNNQFQGPIP-N 355
+ S +P SL+NL+ +L+ L N+ SG I P QN L +L L NN F G IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDF 415
L N + LV + L+ NYL+G I S L + L N GEI + L++L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 416 STNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPK 475
N++TG IPS + + L + LS+N + GEIP +G+L L L+ N SG + +
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 476 LGLLVQLEHLDLSSNRLSNSIPESL--------GNLVK-LHYLNLSNNHFSREI------ 520
LG L LDL++N + +IP ++ N + Y+ + N+ +E
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 521 ----PIKLEELIHLSE---------------------------LDLSYNFLGREIPSQIC 549
I+ E+L LS LD+SYN L IP +I
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 550 IMQSLEKLNLSHNSLSGVIP 569
M L LNL HN +SG IP
Sbjct: 654 SMPYLFILNLGHNDISGSIP 673
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 131/258 (50%), Gaps = 29/258 (11%)
Query: 233 IPSELRNLKSLYFLELGN-NKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFL 291
IPS L NL L FL +G N L GPIP LT L LYI + +SG+IP + +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 292 SELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG 351
L+ +N LS ++P S+S+L NLV ++F N +SGAIP Y + KL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL------------ 175
Query: 352 PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLD 411
+ ++RN LTG I +F NL F+DLS N G+ S +G
Sbjct: 176 ----------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 412 SLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ 471
+ + N++ ++ ++G S L LDL +N I G +P L +L F L ++ N L G+
Sbjct: 225 KIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 472 LSPKLGLLVQLEHLDLSS 489
+ P+ G L+ D+S+
Sbjct: 284 I-PQGG---NLQRFDVSA 297
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 37/311 (11%)
Query: 2 EESHALLRWKTSLQNHNNGSSLSSWTVNNVTKIGPCAWVGIHCNHGG---RVNSINLTNI 58
++ ALL+ K L N ++LSSW T W+G+ C+ RVN+++L+ +
Sbjct: 6 QDKQALLQIKKDL---GNPTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 59 GL-KGTLHDFSFSSFPHLAYLDLWS-NQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQ 116
L K S ++ P+L +L + N L G IPP I +++L YL ++ + GAIP
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 117 IGHXXXXXXXXXXXXXXXGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYL 176
+ ++ +L L N L G +P S+ +L NL +
Sbjct: 121 L------------------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 177 YNNSLSGSIPSEIGNL-KFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPS 235
N +SG+IP G+ K + +S N+L+G IP + NL NL + L N+L G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 236 ELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELN 295
+ K+ + L N L+ + G NL L + NN + G++P + LKFL LN
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 296 LGFNKLSNSIP 306
+ FN L IP
Sbjct: 275 VSFNNLCGEIP 285
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 108/220 (49%), Gaps = 5/220 (2%)
Query: 305 IPVSLSNLTNLVFLSFYQ-NSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSL 362
IP SL+NL L FL N+L G IP L +L L + + G IP+ L + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKL-DSLDFSTNNIT 421
V + + N L+G + S PNL I N G I +G KL S+ S N +T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 422 GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQ 481
G IP + L +DLS N + G+ G K+ LA+N L+ L K+GL
Sbjct: 188 GKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN 245
Query: 482 LEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIP 521
L LDL +NR+ ++P+ L L LH LN+S N+ EIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 116/242 (47%), Gaps = 7/242 (2%)
Query: 137 IPLEVGRLSSLNNLTLYA-NCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFL 195
IP + L LN L + N L G IP ++ LT L LY+ + ++SG+IP + +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 196 SRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYF-LELGNNKLS 254
S+N LSG++P S+ +L NLV + D N + G IP + L+ + + N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 255 GPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSI-PVSLSNLT 313
G IP F NL NL + + N+L G G+ K +++L N L+ + V LS
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK-- 244
Query: 314 NLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSL-VRVRLNRNYL 372
NL L N + G +P+ L L L + N G IP NL V N L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 373 TG 374
G
Sbjct: 305 CG 306
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 3/202 (1%)
Query: 370 NYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIG 429
N L G I + L ++ ++H N G I + L +LDFS N ++G +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 430 YSSQLEVLDLSSNHIVGEIPTELGKLS-FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLS 488
L + N I G IP G S F + +++N+L+G++ P L L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 489 SNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQI 548
N L G+ ++L+ N + ++ K+ +L+ LDL N + +P +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 549 CIMQSLEKLNLSHNSLSGVIPR 570
++ L LN+S N+L G IP+
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ 286
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 55 LTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIP 114
+T+ + G + DF S L LD N L G +PP I ++ L + N GAIP
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 115 PQIGHXXXXXXXXXXXXXXXGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAIL 174
G ++T+ N L G IP + NL NLA +
Sbjct: 167 DSYGSFSKL-----------------------FTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 175 YLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIP 234
L N L G G+ K + L+ N L+ + +G NL L L NN ++G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 235 SELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGV-LYIYNNLLSGS 280
L LK L+ L + N L G IP GNL V Y N L GS
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS 307
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 138/278 (49%), Gaps = 21/278 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L +N + L P L NL +L L++ +NK+S
Sbjct: 140 TISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 193
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 249
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 304
Query: 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNIT 421
NLT++ L NN +IS KL L FS N ++
Sbjct: 305 KNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 340
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 132/280 (47%), Gaps = 41/280 (14%)
Query: 312 LTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNY 371
L NL ++F N L+ P +NL KL +L+ NNQ P L NLT+L + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 372 LTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYS 431
+T + NL ++LS N +IS+ G L L FS+N +T P +
Sbjct: 119 ITD--IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANL 172
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL------ 485
+ LE LD+SSN V +I L KL+ LI NQ+S ++P LG+L L+ L
Sbjct: 173 TTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQ 228
Query: 486 ----------------DLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIH 529
DL++N++SN P L L KL L L N S P L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 530 LSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 285 LTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 225 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 334
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 335 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 384
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 127/253 (50%), Gaps = 19/253 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L +N + L P L NL +L L++ +NK+S
Sbjct: 140 TISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 193
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 249
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 304
Query: 384 PNLTFIDLSHNNF 396
NLT++ L NN
Sbjct: 305 KNLTYLTLYFNNI 317
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 132/280 (47%), Gaps = 41/280 (14%)
Query: 312 LTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNY 371
L NL ++F N L+ P +NL KL +L+ NNQ P L NLT+L + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 372 LTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYS 431
+T + NL ++LS N +IS+ G L L FS+N +T P +
Sbjct: 119 ITD--IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANL 172
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL------ 485
+ LE LD+SSN V +I L KL+ LI NQ+S ++P LG+L L+ L
Sbjct: 173 TTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQ 228
Query: 486 ----------------DLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIH 529
DL++N++SN P L L KL L L N S P L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 530 LSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 285 LTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 111/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 225 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 334
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
Y N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 384
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 127/253 (50%), Gaps = 19/253 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L +N + L P L NL +L L++ +NK+S
Sbjct: 140 TISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 193
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 249
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 304
Query: 384 PNLTFIDLSHNNF 396
NLT++ L NN
Sbjct: 305 KNLTYLTLYFNNI 317
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 133/280 (47%), Gaps = 41/280 (14%)
Query: 312 LTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNY 371
L NL ++F N L+ P +NL KL +L+ NNQ P L NLT+L + L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 118
Query: 372 LTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYS 431
+T + NL ++LS N +IS+ G L L+FS+N +T P +
Sbjct: 119 ITD--IDPLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANL 172
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHL------ 485
+ LE LD+SSN V +I L KL+ LI NQ+S ++P LG+L L+ L
Sbjct: 173 TTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQIS-DITP-LGILTNLDELSLNGNQ 228
Query: 486 ----------------DLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIH 529
DL++N++SN P L L KL L L N S P L L
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 284
Query: 530 LSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 285 LTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 322
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 111/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 224
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 225 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 334
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
Y N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 335 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 384
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 22/278 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L N + L P L NL +L L++ +NK+S
Sbjct: 140 TISD--ISALSGLTSLQQLNFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 192
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 248
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 249 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 303
Query: 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNIT 421
NLT++ L NN +IS KL L FS N ++
Sbjct: 304 KNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFSNNKVS 339
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 30/283 (10%)
Query: 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L+++N N+L++ P L NLT LV + N ++ P NL LT L L NNQ
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 351 GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISS--DWGRCP 408
P L+NLT+L R+ L+ N ++ LT L NF +++
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTIS-----DISALSGLT--SLQQLNFGNQVTDLKPLANLT 172
Query: 409 KLDSLDFSTNNITGNIPSEIGYSSQLEVLD--LSSNHIVGEIPTELGKLSFFIKLILAQN 466
L+ LD S+N + S+I ++L L+ +++N+ + +I T LG L+ +L L N
Sbjct: 173 TLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526
QL L L L LDL++N++SN P L L KL L L N S P L
Sbjct: 227 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 280
Query: 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 281 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 321
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 224 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 333
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 334 SNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 383
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 137/278 (49%), Gaps = 22/278 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 88 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 143
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L N + L P L NL +L L++ +NK+S
Sbjct: 144 TISDI--SALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 196
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 197 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 252
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 253 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 307
Query: 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNIT 421
NLT++ L NN +IS KL L F+ N ++
Sbjct: 308 KNLTYLTLYFNNI-SDISP-VSSLTKLQRLFFANNKVS 343
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 26/281 (9%)
Query: 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L+++N N+L++ P L NLT LV + N ++ P NL LT L L NNQ
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 124
Query: 351 GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKL 410
P L+NLT+L R+ L+ N IS+ + + LS N ++ L
Sbjct: 125 DIDP-LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTL 178
Query: 411 DSLDFSTNNITGNIPSEIGYSSQLEVLD--LSSNHIVGEIPTELGKLSFFIKLILAQNQL 468
+ LD S+N + S+I ++L L+ +++N+ + +I T LG L+ +L L NQL
Sbjct: 179 ERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELI 528
L L L LDL++N++SN P L L KL L L N S P L L
Sbjct: 233 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 286
Query: 529 HLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 287 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 325
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 227
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 337
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 338 ANNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 387
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 126/253 (49%), Gaps = 20/253 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 144
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L N + L P L NL +L L++ +NK+S
Sbjct: 145 TISDI--SALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 197
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 253
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 254 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 308
Query: 384 PNLTFIDLSHNNF 396
NLT++ L NN
Sbjct: 309 KNLTYLTLYFNNI 321
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 26/281 (9%)
Query: 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L+++N N+L++ P L NLT LV + N ++ P NL LT L L NNQ
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 125
Query: 351 GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKL 410
P L+NLT+L R+ L+ N IS+ + + LS N ++ L
Sbjct: 126 DIDP-LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTL 179
Query: 411 DSLDFSTNNITGNIPSEIGYSSQLEVLD--LSSNHIVGEIPTELGKLSFFIKLILAQNQL 468
+ LD S+N + S+I ++L L+ +++N+ + +I T LG L+ +L L NQL
Sbjct: 180 ERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELI 528
L L L LDL++N++SN P L L KL L L N S P L L
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287
Query: 529 HLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 288 ALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 326
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 111/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 338
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
Y N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 126/253 (49%), Gaps = 20/253 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L+ L ++ + N + + P L NLTNL L L+NN ++ P + NL L+R LS N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN 139
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+S +L L++L L N + L P L NL +L L++ +NK+S
Sbjct: 140 TISD--ISALSGLTSLQQLNFGNQ-VTDLKP--LANLTTLERLDISSNKVSD--ISVLAK 192
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LTNL L NN +S P +G L L EL+L N+L + +L++LTNL L N
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 248
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIY 383
+S P L KLT+L LG NQ P L LT+L + LN N L +IS
Sbjct: 249 QISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNL 303
Query: 384 PNLTFIDLSHNNF 396
NLT++ L NN
Sbjct: 304 KNLTYLTLYFNNI 316
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 30/283 (10%)
Query: 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L+++N N+L++ P L NLT LV + N ++ P NL LT L L NNQ
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 351 GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISS--DWGRCP 408
P L+NLT+L R+ L+ N ++ LT L NF +++
Sbjct: 121 DIDP-LKNLTNLNRLELSSNTIS-----DISALSGLT--SLQQLNFGNQVTDLKPLANLT 172
Query: 409 KLDSLDFSTNNITGNIPSEIGYSSQLEVLD--LSSNHIVGEIPTELGKLSFFIKLILAQN 466
L+ LD S+N + S+I ++L L+ +++N+ + +I T LG L+ +L L N
Sbjct: 173 TLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGN 226
Query: 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526
QL L L L LDL++N++SN P L L KL L L N S P L
Sbjct: 227 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 280
Query: 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIP 569
L L+ L+L+ N L E S I +++L L L N++S + P
Sbjct: 281 LTALTNLELNENQL--EDISPISNLKNLTYLTLYFNNISDISP 321
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 111/233 (47%), Gaps = 17/233 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
+ L++L L + +N + + L LTNL L NN +S P +G L L +L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 223
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ N+L +L +L+NL L L NN + L P L L L L+LG N++S P
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
LT L L + N L P I NLK L+ L L FN +S+ PV S+LT L L F
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFF 333
Query: 321 YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
Y N +S NL + L G+NQ P L NLT + ++ LN T
Sbjct: 334 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 383
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 128/303 (42%), Gaps = 30/303 (9%)
Query: 287 NLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKE--YQNLVKLTKLLL 344
NL L L+LG +K+ P + L +L L Y LS A+ K+ ++NL LT+L L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 345 GNNQFQGPI--PNLRNLTSLVRVRLNRN--YLTGNISESFYIYPNLTFIDLSHNNFYGEI 400
NQ + P+ L SL + + N +L L+F L+ N+ Y +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 401 SSDWGRCPK------LDSLDFSTN----NITGNIPSEIGYSSQLEVLDLSSNHIVGEIPT 450
S DWG+C L+ LD S N +ITGN + I S ++ ++HI+G
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI--LAHHIMG---- 244
Query: 451 ELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLN 510
F QN +G + HLDLS + + L L LN
Sbjct: 245 --AGFGFHNIKDPDQNTFAGLARSSV------RHLDLSHGFVFSLNSRVFETLKDLKVLN 296
Query: 511 LSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPR 570
L+ N ++ L +L L+LSYN LG S + + ++L N ++ + +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 571 CFE 573
F+
Sbjct: 357 TFK 359
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 193/476 (40%), Gaps = 71/476 (14%)
Query: 136 SIPLEVGR-LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSE--IGNL 192
+I E R L +L L L ++ + L P + L +L L LY LS ++ + NL
Sbjct: 63 TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 193 KFLSRTALSHNKLSGSIPH-SLGNLSNLVILFLDNNLLFGLIPSELRNL--KSLYFLELG 249
K L+R LS N++ H S G L++L + +N +F + EL L K+L F L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 250 NNKLSGPIPHFFGNLTN------LGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSN 303
N L + +G N L +L + N + I GN N +S
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI---TGNFS---------NAISK 230
Query: 304 SIPVSLSNLTNLVFLSF--------YQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN 355
S SL +++ F QN+ +G ++L + N
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-----RV 285
Query: 356 LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEI-SSDWGRCPKLDSLD 414
L L + L N + E+FY NL ++LS+ N GE+ SS++ PK+ +D
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYID 344
Query: 415 FSTNNITGNIPSEIGYSSQLEVLDLSSN-----HIVGEIPTELGKLSFFIKLILAQNQLS 469
N+I + +L+ LDL N H + IP + L+ N+L
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP----------DIFLSGNKLV 394
Query: 470 GQLSPKLGLLVQLEHLDLSSNRLSN-SIPESLGNLVKLHYLNLSNNHFS----REIPIKL 524
PK+ L L H LS NRL N I L + L L L+ N FS + P
Sbjct: 395 TL--PKINLTANLIH--LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP--- 447
Query: 525 EELIHLSELDLSYNFLGREIPSQICI-----MQSLEKLNLSHNSLSGVIPRCFEEM 575
E L +L L N L +++C + L+ L L+HN L+ + P F +
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 54/249 (21%)
Query: 29 NNVTKIGPCAWVGIHCNHGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGN 88
N + KI A+ G+ + +NL+ L G L+ +F P +AY+DL N +
Sbjct: 300 NKINKIADEAFYGL-----DNLQVLNLS-YNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 89 IPPQIGNISKLKYLDLSSNS-----FFGAIPPQIGHXXXXXXXXXXXXXXXGSIPLEVGR 143
+ KL+ LDL N+ F +IP I L +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIP---------------------DIFLSGNK 392
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYL----------------YNNSLSGSIPS 187
L +L + L AN LI S L NL ILY +++ PS
Sbjct: 393 LVTLPKINLTAN----LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 188 EIGNLK--FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYF 245
E +L+ FL L + LS+L +L+L++N L L P +L +L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 246 LELGNNKLS 254
L L +N+L+
Sbjct: 509 LSLNSNRLT 517
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 120/500 (24%), Positives = 190/500 (38%), Gaps = 85/500 (17%)
Query: 62 GTLHDFSFSSFPHLAYLDLWSNQLFG-NIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHX 120
L D F + L LDL NQ+ + P G ++ LK +D SSN F ++
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-- 169
Query: 121 XXXXXXXXXXXXXXGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTN------LAIL 174
PL+ G+ +L+ +L AN L + G N L IL
Sbjct: 170 -----------------PLQ-GK--TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209
Query: 175 YLYNN----SLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGN----------LSNLV 220
+ N ++G+ + I + S H +G H++ + S++
Sbjct: 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269
Query: 221 ILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGS 280
L L + +F L LK L L L NK++ F L NL VL + NLL
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 281 IPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSG-----AIPKEY-- 333
L ++ ++L N ++ + L L L N+L+ +IP +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLS 389
Query: 334 -QNLVKLTKLLLGNNQF---QGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFI 389
LV L K+ L N + + NL L L+RV P+L +
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV------------------PHLQIL 431
Query: 390 DLSHNNFYGEISSDW--GRCPKLDSLDFSTNNITGNIPSEIGYS-----SQLEVLDLSSN 442
L+ N F S D P L+ L N + +E+ + S L+VL L+ N
Sbjct: 432 ILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 443 HIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGN 502
++ P L+ L L N+L+ + L LE LD+S N+L P+
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDV--- 545
Query: 503 LVKLHYLNLSNNHFSREIPI 522
V L L++++N F E +
Sbjct: 546 FVSLSVLDITHNKFICECEL 565
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Query: 145 SSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALSHN 203
+ L L +N L L + LT L +LYL +N L ++P+ I LK L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
KL L NL L LD N L L P +L L +L LG N+L F
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQN 323
LT+L L +YNN L L L L L N+L + +L L L +N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 184 SIPSEI-GNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS 242
+IPS I + K L L NKLS + L+ L +L+L++N L L + LK+
Sbjct: 30 AIPSNIPADTKKLD---LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 243 LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLS 302
L L + +NKL F L NL L + N L P +L L+ L+LG+N+L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 303 NSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
+ LT+L L Y N L + L +L L L NNQ +
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 3/175 (1%)
Query: 222 LFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSI 281
L L +N L L L L L L +NKL F L NL L++ +N L ++
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100
Query: 282 PCEI-GNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLT 340
P + L L+EL L N+L + P +LT L +LS N L + L L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 341 KLLLGNNQFQG-PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
+L L NNQ + P LT L ++L+ N L +F L + L N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 4/178 (2%)
Query: 100 KYLDLSSNSFFGAIPPQIGHXXXXXXXXXXXXXXXGSIPLEV-GRLSSLNNLTLYANCLE 158
K LDL SN ++P + H ++P + L +L L + N L+
Sbjct: 40 KKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98
Query: 159 GLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSL-GNLS 217
L L NLA L L N L P +L L+ +L +N+L S+P + L+
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157
Query: 218 NLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
+L L L NN L + L L L+L NN+L F +L L +L + N
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%)
Query: 479 LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYN 538
LV L L L N+L + P +L KL YL+L N ++L L EL L N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 539 FLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMH 576
L R + L+ L L +N L V F+ +
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 69 FSSFPHLAYLDLWSNQLFGNIPPQI-GNISKLKYLDLSSNSFFGAIPPQIGHXXXXXXXX 127
F +LA L L NQL ++PP++ +++KL YL L N
Sbjct: 105 FDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL------------------ 145
Query: 128 XXXXXXXGSIPLEV-GRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIP 186
S+P V +L+SL L LY N L+ + + LT L L L NN L
Sbjct: 146 -------QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 187 SEIGNLKFLSRTALSHN 203
+L+ L L N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 51/228 (22%)
Query: 292 SELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG 351
+L+L NKLS+ + LT L L N L ++ L L L + +N+ Q
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 352 -PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKL 410
PI L +L +RL+RN L F LT++ L +N
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ------------- 146
Query: 411 DSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSG 470
++P + KL+ +L L NQL
Sbjct: 147 ------------SLPKGV-----------------------FDKLTSLKELRLYNNQLKR 171
Query: 471 QLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFS 517
L +L+ L L +N+L +PE + +L KL L L N +
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD 218
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 136/308 (44%), Gaps = 44/308 (14%)
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L+NL L L+ N + + P L NL L L +G NK++ NLTNL LY+ +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 276 LLSGSIPCEIGNLKFLSELNLGFN-KLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQ 334
+S P + NL LNLG N LS+ P LSN T L +L+ ++ + P
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--IA 174
Query: 335 NLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
NL L L L NQ + P L +LTSL +Y T +++ I P
Sbjct: 175 NLTDLYSLSLNYNQIEDISP-LASLTSL-------HYFTAYVNQITDITP---------- 216
Query: 395 NFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGK 454
+L+SL N IT P + SQL L++ +N I +I +
Sbjct: 217 ---------VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI-SDI-NAVKD 263
Query: 455 LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514
L+ L + NQ+S L L QL L L++N+L N E +G L L L LS N
Sbjct: 264 LTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 515 HFSREIPI 522
H + P+
Sbjct: 322 HITDIRPL 329
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 118/254 (46%), Gaps = 18/254 (7%)
Query: 164 SLGNLTNLAILYLYNNSLSGSIPSEIGNL-KFLSRTALSHNKLSGSIPHSLGNLSNLVIL 222
+L NLTNL LYL +++S P + NL K S +++ LS P L N + L L
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYL 160
Query: 223 FLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIP 282
+ + + + P + NL LY L L N++ P +LT+L Y N ++ P
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216
Query: 283 CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKL 342
+ N L+ L +G NK+++ P L+NL+ L +L N +S ++L KL L
Sbjct: 217 --VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXL 270
Query: 343 LLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISS 402
+G+NQ I L NL+ L + LN N L E NLT + LS N+
Sbjct: 271 NVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITD--IR 327
Query: 403 DWGRCPKLDSLDFS 416
K DS DF+
Sbjct: 328 PLASLSKXDSADFA 341
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 123/474 (25%), Positives = 191/474 (40%), Gaps = 73/474 (15%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI----P 258
+ S +P NL+NL L L +N + + ++LR L + L L + P+ P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 259 HFFGNLT--------NLGVLYIYNNLLSGSIPCEIGNL---KFLSELNLGFNKLSNSIPV 307
F + N L + + G E+ L +F +E NL K S
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSALE 252
Query: 308 SLSNLT----NLVFLSFYQN------------------SLSGAIPKEYQNLVKLTKLLLG 345
L NLT L +L +Y + S++ K++ L L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312
Query: 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN--NFYGEIS-S 402
N +F G P L+ L SL R+ N SE P+L F+DLS N +F G S S
Sbjct: 313 NCKF-GQFPTLK-LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 403 DWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
D+G L LD S N + + +G QLE LD +++ ++ + S F+
Sbjct: 369 DFGT-TSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL-----KQMSEFSVFLS-- 419
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSRE-IP 521
L L +LD+S + L L L ++ N F +P
Sbjct: 420 ----------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 522 IKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575
EL +L+ LDLS L + P+ + SL+ LN++ N L V F+ +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 187/461 (40%), Gaps = 73/461 (15%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI----P 258
+ S +P NL+NL L L +N + + ++LR L + L L + P+ P
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 218
Query: 259 HFFGNLT--------NLGVLYIYNNLLSGSIPCEIGNL---KFLSELNLGFNKLSNSIPV 307
F + N L + + G E+ L +F +E NL K S
Sbjct: 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSALE 276
Query: 308 SLSNLT----NLVFLSFYQN------------------SLSGAIPKEYQNLVKLTKLLLG 345
L NLT L +L +Y + S++ K++ L L
Sbjct: 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 336
Query: 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN--NFYGEIS-S 402
N +F G P L+ L SL R+ N SE P+L F+DLS N +F G S S
Sbjct: 337 NCKF-GQFPTLK-LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 392
Query: 403 DWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
D+G L LD S N + + +G QLE LD +++ ++ + S F+
Sbjct: 393 DFGTI-SLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL-----KQMSEFSVFLS-- 443
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSRE-IP 521
L L +LD+S + L L L ++ N F +P
Sbjct: 444 ----------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 522 IKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562
EL +L+ LDLS L + P+ + SL+ LN+SHN
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 187/461 (40%), Gaps = 73/461 (15%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI----P 258
+ S +P NL+NL L L +N + + ++LR L + L L + P+ P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 259 HFFGNLT--------NLGVLYIYNNLLSGSIPCEIGNL---KFLSELNLGFNKLSNSIPV 307
F + N L + + G E+ L +F +E NL K S
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSALE 252
Query: 308 SLSNLT----NLVFLSFYQN------------------SLSGAIPKEYQNLVKLTKLLLG 345
L NLT L +L +Y + S++ K++ L L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312
Query: 346 NNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN--NFYGEIS-S 402
N +F G P L+ L SL R+ N SE P+L F+DLS N +F G S S
Sbjct: 313 NCKF-GQFPTLK-LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 403 DWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
D+G L LD S N + + +G QLE LD +++ ++ + S F+
Sbjct: 369 DFGT-TSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNL-----KQMSEFSVFLS-- 419
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSRE-IP 521
L L +LD+S + L L L ++ N F +P
Sbjct: 420 ----------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 522 IKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562
EL +L+ LDLS L + P+ + SL+ LN+SHN
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 1/185 (0%)
Query: 68 SFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHXXXXXXXX 127
SF + +L L L SN L ++ L+ LDLS N+ ++ P H
Sbjct: 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 128 XXXXXXXGSIPLEVGR-LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIP 186
+ + R L++L L L N L+ L + +L NL L+L+ N +S
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 187 SEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFL 246
L L R L N+++ PH+ +L L+ L+L N L L L L++L +L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 247 ELGNN 251
L +N
Sbjct: 231 RLNDN 235
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
Query: 144 LSSLNNLTLYANC-LEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSH 202
L+ L L L N L + P + L L L+L L P L L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 203 NKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFG 262
N L + +L NL LFL N + + R L SL L L N+++ PH F
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 263 NLTNLGVLYIYNNLLSGSIPCE-IGNLKFLSELNLGFN 299
+L L LY++ N LS ++P E + L+ L L L N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 31/215 (14%)
Query: 364 RVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEI-SSDWGRCPKLDSLDFSTNNITG 422
R+ L+ N ++ + SF NLT + L H+N I ++ + L+ LD S N
Sbjct: 36 RIFLHGNRISHVPAASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQLDLSDN---- 90
Query: 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPT---------ELGK-----LSFFIKLILAQNQL 468
+QL +D ++ H +G + T ELG L+ L L N L
Sbjct: 91 ---------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSREIPIKLEEL 527
L L HL L NR+S S+PE + L L L L N + P +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 528 IHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562
L L L N L + +++L+ L L+ N
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 1/185 (0%)
Query: 68 SFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHXXXXXXXX 127
SF + +L L L SN L ++ L+ LDLS N+ ++ P H
Sbjct: 50 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 109
Query: 128 XXXXXXXGSIPLEVGR-LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIP 186
+ + R L++L L L N L+ L + +L NL L+L+ N +S
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 169
Query: 187 SEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFL 246
L L R L N+++ PH+ +L L+ L+L N L L L L++L +L
Sbjct: 170 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 229
Query: 247 ELGNN 251
L +N
Sbjct: 230 RLNDN 234
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
Query: 144 LSSLNNLTLYANC-LEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSH 202
L+ L L L N L + P + L L L+L L P L L L
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 203 NKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFG 262
N L + +L NL LFL N + + R L SL L L N+++ PH F
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 263 NLTNLGVLYIYNNLLSGSIPCE-IGNLKFLSELNLGFN 299
+L L LY++ N LS ++P E + L+ L L L N
Sbjct: 198 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 234
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 31/215 (14%)
Query: 364 RVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEI-SSDWGRCPKLDSLDFSTNNITG 422
R+ L+ N ++ + SF NLT + L H+N I ++ + L+ LD S N
Sbjct: 35 RIFLHGNRISHVPAASFRACRNLTILWL-HSNVLARIDAAAFTGLALLEQLDLSDN---- 89
Query: 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPT---------ELGK-----LSFFIKLILAQNQL 468
+QL +D ++ H +G + T ELG L+ L L N L
Sbjct: 90 ---------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSREIPIKLEEL 527
L L HL L NR+S S+PE + L L L L N + P +L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 528 IHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHN 562
L L L N L + +++L+ L L+ N
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 191 NLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGL---IPSELRNLKSLYFLE 247
N+++L AL NKL +L L+NL L L N L L + +L NLK L +E
Sbjct: 64 NVRYL---ALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 248 LGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPV 307
N+L F LTNL L + +N L L L+EL+L +N+L +
Sbjct: 119 ---NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 308 SLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLV 363
LT L L YQN L + L L + L +N + P +R L+ +
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 231
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 5/196 (2%)
Query: 382 IYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD-FSTNNITGNIPSEIGYSSQLEVLDLS 440
I+P+ F + N + +D +L+S+D NN I Y + L L
Sbjct: 12 IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG 71
Query: 441 SNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL 500
N + + L +L+ LIL NQL + L L+ L L N+L S+P+ +
Sbjct: 72 GNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128
Query: 501 -GNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNL 559
L L YLNL++N ++L +L+ELDLSYN L + L+ L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 560 SHNSLSGVIPRCFEEM 575
N L V F+ +
Sbjct: 189 YQNQLKSVPDGVFDRL 204
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 140 EVGRLSSLNNLT---LYANCLEGLIPHSLGNLTNLAILYLYNN---SLSGSIPSEIGNLK 193
++ L L NLT L N L+ L LTNL L L N SL + ++ NL
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 194 FLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253
+L+ L+HN+L L+NL L L N L L L L L L N+L
Sbjct: 137 YLN---LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 254 SGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
F LT+L +++++N C +++LSE
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSE 229
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 334 QNLVKLTKLLLGNNQFQGPIPN--LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDL 391
+ L LT L+L NQ Q +PN LT+L + L N L F NLT+++L
Sbjct: 82 KELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 392 SHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHI 444
+HN + + L LD S N + +QL+ L L N +
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
L++L L L N + L P L NLT + L L N L S I L+ + L+
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 204 KLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
+++ P L LSNL +L+LD N + + P L L +L +L +GNN+++ P N
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LAN 177
Query: 264 LTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
L+ L L +N +S P + +L L E++L N++S+ P L+NL+NL ++
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTL 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L+NL+ L L +N + L P L+NL + LEL N L L ++ L + +
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 276 LLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
++ P + L L L L N+++N P L+ LTNL +LS N ++ P N
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LAN 177
Query: 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLT 373
L KLT L +N+ P L +L +L+ V L N ++
Sbjct: 178 LSKLTTLRADDNKISDISP-LASLPNLIEVHLKDNQIS 214
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 129/305 (42%), Gaps = 46/305 (15%)
Query: 239 NLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGF 298
NL+ YF + +N H F L L + + +P + L L +L L
Sbjct: 260 NLQKHYFFNISSNTF-----HCFSGLQELDLTATH----LSELPSGLVGLSTLKKLVLSA 310
Query: 299 NKLSNSIPVSLSNLTNLVFLSFYQNSL-----SGAIPKEYQNLVKLTKLLLGNNQFQGPI 353
NK N +S SN +L LS N+ +G + +NL L +L L ++ +
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL----ENLENLRELDLSHDDIETSD 366
Query: 354 P---NLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNF-YGEISSDWGRCPK 409
LRNL+ L + L+ N +E+F P L +DL+ + S +
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426
Query: 410 LDSL-------DFSTNNITGNIPSEIGYSSQLEVLDLSSNHI-VGEIPTE-----LGKLS 456
L L D S+ + +P+ L+ L+L NH G I LG+L
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 457 FFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
L+L+ LS L + H+DLS NRL++S E+L +L + YLNL++NH
Sbjct: 480 I---LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535
Query: 517 SREIP 521
S +P
Sbjct: 536 SIILP 540
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 182 SGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK 241
S + PS+ T +K S+P G +N IL+L +N + L P +L
Sbjct: 10 SAACPSQCS---CSGTTVDCRSKRHASVP--AGIPTNAQILYLHDNQITKLEPGVFDSLI 64
Query: 242 SLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKL 301
+L L LG+N+L F +LT L VL + N L+ L L EL + NKL
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 302 SNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
+ +P + LT+L L+ QN L + L LT L N +
Sbjct: 125 TE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL-SNLTNLVFLSFYQN 323
TN +LY+++N ++ P +L L EL LG N+L ++PV + +LT L L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYL 372
L+ + LV L +L + N+ + LT L + L++N L
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 8/145 (5%)
Query: 405 GRCPKLDSLDFSTNNIT----GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIK 460
CP S +T + ++P+ I ++Q +L L N I P L +
Sbjct: 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKE 68
Query: 461 LILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREI 520
L L NQL L QL LDL +N+L+ LV L L + N + E+
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127
Query: 521 PIKLEELIHLSELDLSYNFLGREIP 545
P +E L HL+ L L N L + IP
Sbjct: 128 PRGIERLTHLTHLALDQNQL-KSIP 151
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALSHNKLSGS 208
L L+ N + L P +L NL LYL +N L G++P + +L L+ L N+L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 209 IPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH-FFGNLTNL 267
L +L LF+ N L L P + L L L L N+L IPH F L++L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSL 161
Query: 268 GVLYIYNNLLSGSIPCEIGNLKFL 291
Y++ N CE ++ +L
Sbjct: 162 THAYLFGNPWD----CECRDIMYL 181
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 26/138 (18%)
Query: 169 TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228
TN ILYL++N ++ KL P +L NL L+L +N
Sbjct: 40 TNAQILYLHDNQIT---------------------KLE---PGVFDSLINLKELYLGSNQ 75
Query: 229 LFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNL 288
L L +L L L+LG N+L+ F L +L L++ N L+ +P I L
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL 134
Query: 289 KFLSELNLGFNKLSNSIP 306
L+ L L N+L SIP
Sbjct: 135 THLTHLALDQNQL-KSIP 151
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 461 LILAQNQLSGQLSPKL-GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSRE 519
L L NQ++ +L P + L+ L+ L L SN+L +L +L L+L N +
Sbjct: 45 LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 520 IPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575
+ L+HL EL + N L E+P I + L L L N L + F+ +
Sbjct: 104 PSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 81/195 (41%), Gaps = 14/195 (7%)
Query: 179 NSLSGSIPSEIGNLKFLSR--TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSE 236
+S+ IP++ L S LS G L+ L L LD N L L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGV 78
Query: 237 LRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI-GNLKFLSELN 295
+L L L L NN+L+ F +LT L LY+ N L S+P + L L EL
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 296 LGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIP 354
L N+L SIP + LTNL LS N L + L KL + L NQF
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 355 NLRNLTSLVRVRLNR 369
+ L+ +R N+
Sbjct: 197 EILYLSQWIRENSNK 211
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 288 LKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNN 347
L L+ LNL +N+L +LT L L N L+ + +L +L KL LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 348 QFQG-PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGR 406
Q + P LT L +RLN N L + +F NL + LS N + R
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 407 CPKLDSL 413
KL ++
Sbjct: 178 LGKLQTI 184
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALSH 202
L+ L L L N L+ L +LT L L L NN L+ S+P + +L L + L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 203 NKLSGSIPHSL-GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH-F 260
N+L S+P + L+ L L L+ N L + L +L L L N+L +PH
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEI 285
F L L + ++ N S CEI
Sbjct: 175 FDRLGKLQTITLFGNQFDCS-RCEI 198
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 145 SSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNK 204
+ L L + L L + LT L L L N L +L L L++N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 205 LSGSIPHSL-GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
L+ S+P + +L+ L L+L N L L L L L L N+L F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 264 LTNLGVLYIYNNLLSGSIP 282
LTNL L + N L S+P
Sbjct: 154 LTNLQTLSLSTNQLQ-SVP 171
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 477 GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536
G+ E LDL S L+ + L KL +LNL N ++L L L L+
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 537 YNFLGREIPSQICIMQSLEKLNLSHNSL----SGVIPR 570
N L + L+KL L N L SGV R
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 84/190 (44%), Gaps = 11/190 (5%)
Query: 68 SFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQ----IGHXXXX 123
SF S +L L L SN L G ++ L+ LDLS N+ + P +GH
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 124 XXXXXXXXXXXGSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSG 183
P L++L L L N L+ L ++ +L NL L+L+ N +
Sbjct: 110 HLDRCGLQELG---PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166
Query: 184 SIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFL-DNNLLFGLIPSE-LRNLK 241
L L R L N ++ PH+ +L L+ L+L NNL ++P+E L L+
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL--SMLPAEVLVPLR 224
Query: 242 SLYFLELGNN 251
SL +L L +N
Sbjct: 225 SLQYLRLNDN 234
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 144 LSSLNNLTLYANC-LEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSH 202
L+ L L L N L + P + L +L L+L L P L L L
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 203 NKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFG 262
N L ++ +L NL LFL N + + R L SL L L N ++ PH F
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 263 NLTNLGVLYIYNNLLSGSIPCEI 285
+L L LY++ N LS +P E+
Sbjct: 198 DLGRLMTLYLFANNLS-MLPAEV 219
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 4/184 (2%)
Query: 144 LSSLNNLT---LYANCLEGLIPHSLGNLTNLAILYLYNNS-LSGSIPSEIGNLKFLSRTA 199
S NLT L++N L G+ + LT L L L +N+ L P+ L L
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 200 LSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259
L L P L+ L L+L +N L L + R+L +L L L N++ H
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 260 FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLS 319
F L +L L ++ N ++ P +L L L L N LS L L +L +L
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
Query: 320 FYQN 323
N
Sbjct: 231 LNDN 234
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 31/215 (14%)
Query: 364 RVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGN 423
R+ L+ N ++ + SF NLT + L N G ++ + L+ LD S N
Sbjct: 35 RIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN----- 89
Query: 424 IPSEIGYSSQLEVLDLSSNHIVGEIPT---------ELGK-----LSFFIKLILAQNQLS 469
+QL V+D ++ +G + T ELG L+ L L N L
Sbjct: 90 --------AQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 470 GQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSREIPIKLEELI 528
L L HL L NR+ S+PE + L L L L NH +R P +L
Sbjct: 142 ALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 529 HLSELDLSYNFLGREIPSQICI-MQSLEKLNLSHN 562
L L L N L +P+++ + ++SL+ L L+ N
Sbjct: 201 RLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDN 234
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 2/177 (1%)
Query: 222 LFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL-LSGS 280
+FL N + + + ++ ++L L L +N L+G F LT L L + +N L
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 281 IPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLT 340
P L L L+L L P L L +L N+L +++L LT
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 341 KLLLGNNQFQG-PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNF 396
L L N+ P R L SL R+ L++N++ +F L + L NN
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 141 VGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTAL 200
V L++L L L N + L P L NLT + L L N L S I L+ + L
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114
Query: 201 SHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHF 260
+ +++ P L LSNL +L+LD N + + P L L +L +L +GN ++S P
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSF 320
NL+ L L +N +S P + +L L E++L N++S+ P L+N +NL ++
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
Query: 321 YQNSLS 326
+++
Sbjct: 225 TNQTIT 230
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 179 NSLSGSIPSEIGNLKFLSR--TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSE 236
+S+ IP++ L S LS G L+ L L LD N L L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGV 78
Query: 237 LRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI-GNLKFLSELN 295
+L L L L NN+L+ F +LT L LY+ N L S+P + L L EL
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 296 LGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349
L N+L SIP + LTNL LS N L + L KL + L NQF
Sbjct: 138 LNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 288 LKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNN 347
L L+ LNL +N+L +LT L L N L+ + +L +L KL LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 348 QFQG-PIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGR 406
Q + P LT L +RLN N L + +F NL + LS N + R
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 407 CPKLDSL 413
KL ++
Sbjct: 178 LGKLQTI 184
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALSH 202
L+ L L L N L+ L +LT L L L NN L+ S+P + +L L + L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 203 NKLSGSIPHSL-GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH-F 260
N+L S+P + L+ L L L+ N L + L +L L L N+L +PH
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 261 FGNLTNLGVLYIYNNLLSGSIPCEI 285
F L L + ++ N S CE
Sbjct: 175 FDRLGKLQTITLFGNQFDCS-RCET 198
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 3/139 (2%)
Query: 145 SSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNK 204
+ L L + L L + LT L L L N L +L L L++N+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 205 LSGSIPHSL-GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGN 263
L+ S+P + +L+ L L+L N L L L L L L N+L F
Sbjct: 95 LA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 264 LTNLGVLYIYNNLLSGSIP 282
LTNL L + N L S+P
Sbjct: 154 LTNLQTLSLSTNQLQ-SVP 171
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 477 GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536
G+ E LDL S L+ + L KL +LNL N ++L L L L+
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 537 YNFLGREIPSQICIMQSLEKLNLSHNSL----SGVIPR 570
N L + L+KL L N L SGV R
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 16/233 (6%)
Query: 218 NLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLL 277
+ +L L NN + + + +NLK+L+ L L NNK+S P F L L LY+ N L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 278 SGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSL--SGAIPKEYQN 335
+P ++ K L EL + N+++ + L ++ + N L SG +Q
Sbjct: 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 336 LVKLTKLLLGNNQF----QGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDL 391
+ KL+ + + + QG P SL + L+ N +T + S NL + L
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 392 SHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHI 444
S N+ + P L L + N + +P + ++V+ L +N+I
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 167 NLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDN 226
NL NL L L NN +S P L L R LS N+L +P + L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 227 NLLFGLIPSELRNLKSLYFLELGNNKL--SGPIPHFFGNLTNLGVLYIYNNLLSGSIPCE 284
N + + S L + +ELG N L SG F + L + I + ++ +IP
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP-- 187
Query: 285 IGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLL 344
G L+EL+L NK++ SL L NL L NS+S N L +L L
Sbjct: 188 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247
Query: 345 GNNQF 349
NN+
Sbjct: 248 NNNKL 252
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 485 LDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREI 544
LDL +N+++ NL LH L L NN S+ P L+ L L LS N L +E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 545 PSQICIMQSLEKLNLSHNSLSGVIPRCF 572
P + + ++L++L + N ++ V F
Sbjct: 116 PEK--MPKTLQELRVHENEITKVRKSVF 141
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 142 GRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALS 201
G SL L L N + + SL L NLA L L NS+S + N L L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 202 HNKLSGSIPHSLGNLSNLVILFLDNN 227
+NKL +P L + + +++L NN
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNN 273
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 16/233 (6%)
Query: 218 NLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLL 277
+ +L L NN + + + +NLK+L+ L L NNK+S P F L L LY+ N L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 278 SGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSL--SGAIPKEYQN 335
+P ++ K L EL + N+++ + L ++ + N L SG +Q
Sbjct: 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169
Query: 336 LVKLTKLLLGNNQF----QGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDL 391
+ KL+ + + + QG P SL + L+ N +T + S NL + L
Sbjct: 170 MKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 392 SHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHI 444
S N+ + P L L + N + +P + ++V+ L +N+I
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 79/185 (42%), Gaps = 8/185 (4%)
Query: 167 NLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDN 226
NL NL L L NN +S P L L R LS N+L +P + L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHE 130
Query: 227 NLLFGLIPSELRNLKSLYFLELGNNKL--SGPIPHFFGNLTNLGVLYIYNNLLSGSIPCE 284
N + + S L + +ELG N L SG F + L + I + ++ +IP
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP-- 187
Query: 285 IGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLL 344
G L+EL+L NK++ SL L NL L NS+S N L +L L
Sbjct: 188 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247
Query: 345 GNNQF 349
NN+
Sbjct: 248 NNNKL 252
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 485 LDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREI 544
LDL +N+++ NL LH L L NN S+ P L+ L L LS N L +E+
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 545 PSQICIMQSLEKLNLSHNSLSGVIPRCF 572
P + + ++L++L + N ++ V F
Sbjct: 116 PEK--MPKTLQELRVHENEITKVRKSVF 141
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 142 GRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALS 201
G SL L L N + + SL L NLA L L NS+S + N L L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248
Query: 202 HNKLSGSIPHSLGNLSNLVILFLDNN 227
+NKL +P L + + +++L NN
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNN 273
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 171 LAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLF 230
L LYL NSL+ +P+EI NL L LSHN+L+ S+P LG+ L + +N++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 231 GLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGV----LYIYNNLLSGSIPCEIG 286
L P E NL +L FL + N L F LT V Y+ +N +P E
Sbjct: 307 TL-PWEFGNLCNLQFLGVEGNPLEK---QFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362
Query: 287 NLKFLS--ELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSG--AIPKEYQ 334
++ + E ++ L S ++L F N+L A PK Y+
Sbjct: 363 FIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYR 414
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 267 LGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLS 326
L LY+ N L+ +P EI NL L L+L N+L+ S+P L + L + F+ N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 327 GAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNL 386
+P E+ NL L L + N + +++ L +TG I FY+ N
Sbjct: 307 -TLPWEFGNLCNLQFLGVEGNPLE---------KQFLKI-LTEKSVTGLI---FYLRDNR 352
Query: 387 TFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNI 424
I L H + EI++D + DSL ST ++ ++
Sbjct: 353 PEIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDL 390
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 424 IPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLE 483
+P+EI S L VLDLS N + +P ELG F +K + + L + G L L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSC-FQLKYFYFFDNMVTTLPWEFGNLCNLQ 319
Query: 484 HLDLSSNRLSNSI 496
L + N L
Sbjct: 320 FLGVEGNPLEKQF 332
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 126/324 (38%), Gaps = 32/324 (9%)
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI--PHFFGNLTNLGVLYIY 273
LS+L+IL LD N L L +L L L L G + +FF LT+L +L +
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 274 NNLLSGSIPCEIG-NLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKE 332
+N + P N++ L+L FNK+ + L N F +S++ E
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197
Query: 333 YQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFID-- 390
Y LG + P N TS+ + L+ N ++++ F+ T I
Sbjct: 198 Y---------WLGWEKCGNPFKN----TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 391 -----------LSHNNFYGEISSDWG--RCPKLDSLDFSTNNITGNIPSEIGYSSQLEVL 437
H NF + + + + D S + I + S + + LE L
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 438 DLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIP 497
L+ N I L+ +KL L+QN L S L +LE LDLS N +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 498 ESLGNLVKLHYLNLSNNHFSREIP 521
+S L L L L N + +P
Sbjct: 365 QSFLGLPNLKELALDTNQL-KSVP 387
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 191 NLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGL---IPSELRNLKSLYFLE 247
N+++L AL NKL +L L+NL L L N L L + +L NLK L +E
Sbjct: 64 NVRYL---ALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 248 LGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPV 307
N+L F LTNL LY+Y+N L L L+ L+L N+L +
Sbjct: 119 ---NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 308 SLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349
LT L LS N L + L LT + L NN +
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 140 EVGRLSSLNNLT---LYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFL 195
++ L L NLT L N L+ L LTNL L L N L S+P + L L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 196 SRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSG 255
+ L HN+L L+NL L LDNN L L L L L L +N+L
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 256 PIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
F LT+L +++ NN C ++ +LS
Sbjct: 196 VPDGVFDRLTSLTHIWLLNNPWD----CACSDILYLSR 229
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 71/160 (44%), Gaps = 5/160 (3%)
Query: 237 LRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI-GNLKFLSELN 295
++ L ++ +L LG NKL LTNL L + N L S+P + L L EL
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 296 LGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIP 354
L N+L + LTNL +L Y N L + L LT+L L NNQ Q P
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 355 NLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
LT L ++ LN N L F +LT I L +N
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 5/196 (2%)
Query: 382 IYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD-FSTNNITGNIPSEIGYSSQLEVLDLS 440
I+P+ F + N + +D +L+S+D NN I Y + L L
Sbjct: 12 IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG 71
Query: 441 SNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL 500
N + +I + L +L+ LIL NQL + L L+ L L N+L S+P+ +
Sbjct: 72 GNKL-HDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGV 128
Query: 501 -GNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNL 559
L L YL L +N ++L +L+ LDL N L + L++L+L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 560 SHNSLSGVIPRCFEEM 575
+ N L V F+ +
Sbjct: 189 NDNQLKSVPDGVFDRL 204
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 168 LTNLAILYLYNNSLSG-SIPSEIGNLKFLSRTALSHNKLSGSIPHSL-GNLSNLVILFLD 225
L N+ L L N L S E+ NL +L L+ N+L S+P+ + L+NL L L
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYL---ILTGNQLQ-SLPNGVFDKLTNLKELVLV 117
Query: 226 NNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI 285
N L L L +L +L L +N+L F LTNL L + NN L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 286 GNLKFLSELNLGFNKLSNSIP 306
L L +L+L N+L S+P
Sbjct: 178 DKLTQLKQLSLNDNQLK-SVP 197
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 170 NLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLL 229
++ LYL N + +P E+ N K L+ LS+N++S S N++ L+ L L N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 230 FGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLK 289
+ P LKSL L L N +S F +L+ L L I N L C+ N++
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY----CDC-NMQ 145
Query: 290 FLSE 293
+LS+
Sbjct: 146 WLSD 149
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 185 IPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLY 244
P+E L + R + NK +P G ++ L+LD N F L+P EL N K L
Sbjct: 4 CPTECTCLDTVVRCS---NKGLKVLPK--GIPRDVTELYLDGNQ-FTLVPKELSNYKHLT 57
Query: 245 FLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNS 304
++L NN++S F N+T L L + N L P LK L L+L N +S
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Query: 305 IPVSLSNLTNLVFLSFYQNSL 325
+ ++L+ L L+ N L
Sbjct: 118 PEGAFNDLSALSHLAIGANPL 138
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%)
Query: 160 LIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNL 219
L+P L N +L ++ L NN +S N+ L LS+N+L P + L +L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 220 VILFLDNNLLFGLIPSELRNLKSLYFLELGNNKL 253
+L L N + + +L +L L +G N L
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 183 GSIPSEIG-NLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK 241
+P+ I N ++L+ L N + + +L +L IL L NL+ + L
Sbjct: 27 AEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 242 SLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPC---------------EIG 286
SL LEL +N+L+ F L+ L L++ NN + SIP E+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 287 NLKFLSE-----------LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L+++SE LNLG L + IP +L+ L L L N L P +Q
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 336 LVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
L L KL L + Q N +L SL + L+ N L + F L + L+HN
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 395 NFYGEISSDW 404
++ W
Sbjct: 261 PWHCNCDVLW 270
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 434 LEVLDLSSNHIVGEIPTELGK-LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS-NR 491
L L+L N + +PT+ + LS +L L N + S + L LDL R
Sbjct: 85 LNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 492 LSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIM 551
L + LV L YLNL + ++IP L L+ L EL+LS N L P +
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 552 QSLEKLNLSHNSLSGVIPRCFEEM 575
SL KL L H ++ + F+++
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDL 225
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 3/170 (1%)
Query: 408 PKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQ-N 466
P L++L+ N +T Y S+L L L +N I ++ +L L +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526
+L LV L +L+L L + IP +L LV+L L LS N P +
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMH 576
L L +L L + + + ++SLE+LNLSHN+L + F +H
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLH 250
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 22/169 (13%)
Query: 413 LDFSTNNITGNIPSEIGYSSQLEVLDLSSNHI-----VGEIPTELGKLSFFIKLILAQNQ 467
LDFS N +T + G+ ++LE L L N + + E+ T++ L +L ++QN
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ---QLDISQNS 385
Query: 468 LS-----GQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPI 522
+S G S LL L++SSN L+++I L +K+ L+L +N + IP
Sbjct: 386 VSYDEKKGDCSWTKSLL----SLNMSSNILTDTIFRCLPPRIKV--LDLHSNKI-KSIPK 438
Query: 523 KLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
++ +L L EL+++ N L + +P I + SL+K+ L N PR
Sbjct: 439 QVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 437 LDLSSNHIVGEIPTELGKLSFFIKLILAQNQLS--GQLSPKLGLLVQLEHLDLSSNRLSN 494
LD S+N + + G L+ LIL NQL +++ + L+ LD+S N +S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 495 SIPESLGNLVK-LHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQS 553
+ + K L LN+S+N + I L I + LDL N + + IP Q+ +++
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV--LDLHSNKI-KSIPKQVVKLEA 445
Query: 554 LEKLNLSHNSLSGVIPRCFEEM 575
L++LN++ N L V F+ +
Sbjct: 446 LQELNVASNQLKSVPDGIFDRL 467
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 484 HLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSR--EIPIKLEELIHLSELDLSYNFLG 541
HLD S+N L++++ E+ G+L +L L L N +I ++ L +LD+S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 542 REIPSQIC-IMQSLEKLNLSHNSLSGVIPRCF 572
+ C +SL LN+S N L+ I RC
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 141 VGRLSSLNNLTLYANCLEGL--IPHSLGNLTNLAILYLYNNSLS-GSIPSEIGNLKFLSR 197
G L+ L L L N L+ L I + +L L + NS+S + K L
Sbjct: 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403
Query: 198 TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPI 257
+S N L+ +I L + +L L +N + IP ++ L++L L + +N+L
Sbjct: 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVP 460
Query: 258 PHFFGNLTNLGVLYIYNNLLSGSIP 282
F LT+L ++++ N S P
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 387 TFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVG 446
T +++S N +SD KL L S N I S ++ +LE LDLS N +V
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV- 82
Query: 447 EIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSN-SIPESLGNLVK 505
K+S P V L+HLDLS N I + GN+ +
Sbjct: 83 -------KIS---------------CHPT----VNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 506 LHYLNLSNNHFSR 518
L +L LS H +
Sbjct: 117 LKFLGLSTTHLEK 129
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 183 GSIPSEIG-NLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK 241
+P+ I N ++L+ L N + + +L +L IL L NL+ + L
Sbjct: 27 AEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLP 83
Query: 242 SLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPC---------------EIG 286
SL LEL +N+L+ F L+ L L++ NN + SIP E+
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELK 142
Query: 287 NLKFLSE-----------LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L+++SE LNLG L + IP +L+ L L L N L P +Q
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 336 LVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
L L KL L + Q N +L SL + L+ N L + F L + L+HN
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Query: 395 NFYGEISSDW 404
++ W
Sbjct: 261 PWHCNCDVLW 270
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 434 LEVLDLSSNHIVGEIPTELGK-LSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS-NR 491
L L+L N + +PT+ + LS +L L N + S + L LDL R
Sbjct: 85 LNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR 143
Query: 492 LSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIM 551
L + LV L YLNL + ++IP L L+ L EL+LS N L P +
Sbjct: 144 LEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 552 QSLEKLNLSHNSLSGVIPRCFEEM 575
SL KL L H ++ + F+++
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDL 225
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 3/170 (1%)
Query: 408 PKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQ-N 466
P L++L+ N +T Y S+L L L +N I ++ +L L +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 467 QLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEE 526
+L LV L +L+L L + IP +L LV+L L LS N P +
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCNLKD-IP-NLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 527 LIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEMH 576
L L +L L + + + ++SLE+LNLSHN+L + F +H
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLH 250
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 176/431 (40%), Gaps = 76/431 (17%)
Query: 161 IPHSLGNLTN-LAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNL 219
IP +L N T L + + ++ S + NL FL T N + S LS L
Sbjct: 24 IPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTL 83
Query: 220 VILFLDNNLLFGLIPSEL---RNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
V L N L + + L ++LK L+ ++ G + L H NL NL LY+ +N
Sbjct: 84 V---LTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVH---NLENLESLYLGSNH 137
Query: 277 LSG-SIPCEI--GNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEY 333
+S P + NLK L N + +S SL NL L+F N++ G +
Sbjct: 138 ISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLS-LNFNGNNVKGIELGAF 196
Query: 334 QNLVKLTKLLLGNNQFQ----GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFI 389
+ + FQ G PNL + N L + ++S ++ TF
Sbjct: 197 DSTI-----------FQSLNFGGTPNLSVIF---------NGLQNSTTQSLWLG---TFE 233
Query: 390 DLSHNNFYGEISSDWGRCP-KLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEI 448
D+ + + G C ++SL+ + + + +QL+ LDL++ H+ G +
Sbjct: 234 DIDDEDISSAMLK--GLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-L 290
Query: 449 PTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHY 508
P+ + L+ KL+L+ N L HL + GN+ KLH
Sbjct: 291 PSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR------------GNVKKLH- 337
Query: 509 LNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQ-----SLEKLNLSHNS 563
L + LE+L +L LDLS+N + S C +Q L+ LNLSHN
Sbjct: 338 LGVG----------CLEKLGNLQTLDLSHNDIE---ASDCCSLQLKNLSHLQTLNLSHNE 384
Query: 564 LSGVIPRCFEE 574
G+ + F+E
Sbjct: 385 PLGLQSQAFKE 395
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Query: 340 TKLLLGNNQFQG-PIPNLRNLTSLVRVRLNRNYLT--GNISESFYIYPNLTFIDLSHNNF 396
T+L L +N+ Q P LT L ++ L+ N L+ G S+S + +L ++DLS N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 397 YGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYS-SQLEVLDLSSNHIVGEIPTELGKL 455
+SS++ +L+ LDF +N+ + S L LD+S H L
Sbjct: 91 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 456 SFFIKLILAQNQLSGQLSPKL-GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNN 514
S L +A N P + L L LDLS +L P + +L L LN+S+N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 515 HF 516
+F
Sbjct: 210 NF 211
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 111/286 (38%), Gaps = 54/286 (18%)
Query: 246 LELGNNKLSGPIPH-FFGNLTNLGVLYIYNNLLSGSIPCEIGNL--KFLSELNLGFN--- 299
LEL +NKL +PH F LT L L + +N LS C + L L+L FN
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 300 ----------------------KLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLV 337
K + V LS L NL++L A + L
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 338 KLTKLLLGNNQFQ-----GPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLS 392
L L + N FQ LRNLT L L++ L +F +L +++S
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 393 HNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIG-YSSQLEVLDLSSNHIVGEIPTE 451
HNNF+ + + L LD+S N+I + E+ + S L L+L+ N +
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267
Query: 452 LGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIP 497
F++ I Q Q LLV++E ++ ++ +P
Sbjct: 268 S-----FLQWIKDQRQ----------LLVEVERMECATPSDKQGMP 298
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 129/316 (40%), Gaps = 8/316 (2%)
Query: 196 SRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSG 255
R L H K ++P + + L L L N + L E + L LEL N +S
Sbjct: 13 DRAVLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 256 PIPHFFGNLTNLGVLYIYNNLLSGSIPCEI-GNLKFLSELNLGFNKLSNSIPVSLSNLTN 314
P F NL NL L + +N L IP + L L++L++ NK+ + +L N
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 315 LVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSLVRVRLNRNYLT 373
L L N L + + L L +L L P L +L L+ +RL +
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189
Query: 374 GNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQ 433
SF L +++SH + ++ + L SL + N+T + +
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249
Query: 434 LEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLS 493
L L+LS N I + L +L ++ L QL+ L L L++S N+L+
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 494 N---SIPESLGNLVKL 506
S+ S+GNL L
Sbjct: 310 TLEESVFHSVGNLETL 325
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 111/289 (38%), Gaps = 28/289 (9%)
Query: 63 TLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGNISKLKYLDLSSNSFFGAIPPQIGHXXX 122
TL+ F+SFPHL L+L N + P N+ L+ L L SN
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL------------- 92
Query: 123 XXXXXXXXXXXXGSIPLEV-GRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSL 181
IPL V LS+L L + N + L+ + +L NL L + +N L
Sbjct: 93 ------------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 182 SGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK 241
L L + L L+ +L +L L++L L + + + + L
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 242 SLYFLELGN-NKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNK 300
L LE+ + L P+ L NL L I + L+ + +L +L LNL +N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259
Query: 301 LSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349
+S L L L + L+ P ++ L L L + NQ
Sbjct: 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 115/274 (41%), Gaps = 3/274 (1%)
Query: 294 LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ-GP 352
L+LG N++ ++ +L L +N +S P + NL L L L +N+ + P
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 353 IPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDS 412
+ L++L ++ ++ N + + F NL +++ N+ + L+
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 413 LDFSTNNITGNIPSE-IGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQ 471
L N+T +IP+E + + L VL L +I +L L ++
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 472 LSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLS 531
++P + L L ++ L+ ++ +LV L +LNLS N S L EL+ L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 532 ELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565
E+ L L P + L LN+S N L+
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 19/245 (7%)
Query: 280 SIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKL 339
++P EI L L+L N +S L +L L N +S K + L KL
Sbjct: 47 AVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 340 TKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGE 399
KL + N PNL +SLV +R++ N + F N+ I++ N
Sbjct: 105 QKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL--- 159
Query: 400 ISSDWGRCP------KLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELG 453
+ G P KL+ L S +TG IP ++ L L L N I +L
Sbjct: 160 --ENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLL 214
Query: 454 KLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSN 513
+ S +L L NQ+ + L L L L L +N+LS +P L +L L + L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHT 273
Query: 514 NHFSR 518
N+ ++
Sbjct: 274 NNITK 278
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 9/245 (3%)
Query: 218 NLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLL 277
+ +L L NN + L + + L+ LY L L NNK+S F L L LYI N L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 278 SGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSL--SGAIPKEYQN 335
IP + + L EL + N++ S L N+ + N L SG P +
Sbjct: 115 V-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNN 395
L KL L + + G +L +L + L+ N + E Y L + L HN
Sbjct: 172 L-KLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228
Query: 396 FYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKL 455
+ P L L N ++ +P+ + L+V+ L +N+I + +
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 456 SFFIK 460
F +K
Sbjct: 288 GFGVK 292
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 11/184 (5%)
Query: 170 NLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLL 229
+ +L L NN +S + L+ L L +NK+S + L L L++ N L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 230 FGLIPSELRNL-KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLL--SGSIPCEIG 286
+ P NL SL L + +N++ F L N+ + + N L SG P
Sbjct: 115 VEIPP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 287 NLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGN 346
LK L+ L + KL+ IP L N + L N + ++ KL +L LG+
Sbjct: 171 GLK-LNYLRISEAKLT-GIPKDLPETLNELHLD--HNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 347 NQFQ 350
NQ +
Sbjct: 227 NQIR 230
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 144 LSSLNNLTLYANCLE--GLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALS 201
L ++N + + N LE G P + L L L + L+G IP ++ + L+ L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLD 201
Query: 202 HNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFF 261
HNK+ L S L L L +N + + L L +L L L NNKLS +P
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGL 260
Query: 262 GNLTNLGVLYIYNN 275
+L L V+Y++ N
Sbjct: 261 PDLKLLQVVYLHTN 274
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 176/446 (39%), Gaps = 58/446 (13%)
Query: 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209
L L N L + + TNL L L +NS+ + N K L + LSHN LS +
Sbjct: 78 LNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTK 137
Query: 210 PHS---------------------------LGNLSNLVILFLDNNLLFGLIPSELRNLKS 242
+ LGN S+L L L +N L P + +
Sbjct: 138 LGTGVQLENLQELLLAKNKILALRSEELEFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 243 LYFLELGNNKLSGPIPHFFGNL------TNLGVLYIYNNLLSGSIPCEIGNLKF--LSEL 294
L+ L L N +L+ PH L T++ L + NN L + LK+ L++L
Sbjct: 197 LFALLLNNAQLN---PHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQL 253
Query: 295 NLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPI- 353
+L +N L + S S L +L +LS N++ P+ + L L L L + +
Sbjct: 254 DLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVS 313
Query: 354 ----PNLRN-----LTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSH-----NNFYGE 399
PN+ + L L + ++ N + S +F +L ++ LS E
Sbjct: 314 LASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNE 373
Query: 400 ISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIP-TELGKLSFF 458
P L +L+ + N+I+ + QL +LDL N I ++ E L
Sbjct: 374 TFVSLAHSPLL-TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNI 432
Query: 459 IKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSI--PESLGNLVKLHYLNLSNNHF 516
++ L+ N+ + L+ L+ L L L N P L L L+LSNN+
Sbjct: 433 FEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNI 492
Query: 517 SREIPIKLEELIHLSELDLSYNFLGR 542
+ LE L +L LD +N L R
Sbjct: 493 ANINEDLLEGLENLEILDFQHNNLAR 518
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 115/424 (27%), Positives = 161/424 (37%), Gaps = 45/424 (10%)
Query: 145 SSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNK 204
S++ L L N L L P + + LAIL NS+S P L L L HN+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 205 LSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNL 264
LS + +NL L L +N + + + +N K+L L+L +N LS
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS--------- 135
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
T LG + L + + L SE L F L NS +L L N
Sbjct: 136 TKLGT-GVQLENLQELLLAKNKILALRSE-ELEF--LGNS---------SLRKLDLSSNP 182
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQGPIP-----NLRNLTSLVRVRLNRNYLTGNISES 379
L P +Q + KL LLL N Q + L N TS+ + L N L +
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSEST 241
Query: 380 F--YIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVL 437
F + NLT +DLS+NN + + + P L L NNI P S L L
Sbjct: 242 FSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL 301
Query: 438 DLSSNHIVGEIPTE---------LGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLS 488
L + L + L + N + S LV L++L LS
Sbjct: 302 SLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 489 S-----NRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGRE 543
L+N SL + L LNL+ NH S+ L L LDL N + ++
Sbjct: 362 KTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQK 420
Query: 544 IPSQ 547
+ Q
Sbjct: 421 LSGQ 424
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 117/287 (40%), Gaps = 26/287 (9%)
Query: 291 LSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF- 349
++ LNL N+L P + + + L L NS+S P+ Q L L L L +N+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 350 QGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPK 409
Q T+L + L N + S F NL +DLSHN +
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLEN 146
Query: 410 LDSLDFSTNNITGNIPSEIGY--SSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQ 467
L L + N I E+ + +S L LDLSSN + P + L+L Q
Sbjct: 147 LQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQ 206
Query: 468 LSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF--SREIPIKLE 525
L+ L+ KL +LS+ + N L+L+NN + E
Sbjct: 207 LNPHLTEKLCW-------ELSNTSIQN--------------LSLANNQLLATSESTFSGL 245
Query: 526 ELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCF 572
+ +L++LDLSYN L + SL L+L +N++ + PR F
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 496 IPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLE 555
IP+ L + + + LNL++N R P L+ LD +N + + P I+ L+
Sbjct: 19 IPDDLPSNITV--LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 556 KLNLSHNSLSGVIPRCF 572
LNL HN LS + + F
Sbjct: 77 VLNLQHNELSQISDQTF 93
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 213 LGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYI 272
G L +LV L L N L G+ P+ + L+LG NK+ F L L L +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 273 YNNLLSGSIPCEIGNLKFLSELNLGFN 299
Y+N +S +P +L L+ LNL N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%)
Query: 260 FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLS 319
FG L +L L + N L+G P + EL LG NK+ L L L+
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 320 FYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349
Y N +S +P +++L LT L L +N F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 28/126 (22%)
Query: 394 NNFYGEISSD--WGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTE 451
+N G ISSD +GR P L L+ N +TG P+ +S ++ L L N I
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI------- 90
Query: 452 LGKLSFFIKLILAQNQLSGQLSPKLGL-LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLN 510
++S K+ L L QL+ L+L N++S +P S +L L LN
Sbjct: 91 ------------------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 511 LSNNHF 516
L++N F
Sbjct: 133 LASNPF 138
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 500 LGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICI-MQSLEKLN 558
G L L L L N + P E H+ EL L N + +EI +++ + + L+ LN
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLN 108
Query: 559 LSHNSLSGVIPRCFEEM 575
L N +S V+P FE +
Sbjct: 109 LYDNQISCVMPGSFEHL 125
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 39/143 (27%)
Query: 359 LTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTN 418
LT+L + L+ N+L SE+F PNL ++DLS N+ + LD FS
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT-----------LDEFLFSD- 110
Query: 419 NITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLS--------- 469
LEVL L +NHIV ++ KL L+QNQ+S
Sbjct: 111 ------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD 158
Query: 470 GQLSPKLGLLVQLEHLDLSSNRL 492
G PKL L LDLSSN+L
Sbjct: 159 GNKLPKLML------LDLSSNKL 175
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 423 NIPSEIGYSSQLEVLDLSSNHI----VGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGL 478
N+P + S +LDLS N++ PT L L L+L+ N L+ S
Sbjct: 32 NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLH---SLLLSHNHLNFISSEAFVP 86
Query: 479 LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYN 538
+ L +LDLSSN L +L L L L NNH E++ L +L LS N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 539 FLGR 542
+ R
Sbjct: 147 QISR 150
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 161 IPHSLGNLTNLAILYLYNNSLSG----SIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNL 216
+P SL + T A+L L +N+LS P+ + NL L LSHN L+ + +
Sbjct: 33 VPQSLPSYT--ALLDLSHNNLSRLRAEWTPTRLTNLHSL---LLSHNHLNFISSEAFVPV 87
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
NL L L +N L L +L++L L L NN + + F ++ L LY+ N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 277 LSGSIPCEI---GN-LKFLSELNLGFNKL 301
+S P E+ GN L L L+L NKL
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 2/148 (1%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ L L+ N L L L SL L LG NKL F LT+L L + N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 277 LSGSIPCEI-GNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P + L L EL L N+L + LT L L YQN L +
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 336 LVKLTKLLLGNNQFQGPIPNLRNLTSLV 363
L L + L +N + P +R L+ +
Sbjct: 147 LTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 135 GSIPLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGN-LK 193
G + G + L L N L+ L LT+L LYL N L S+P+ + N L
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 194 FLSRTALSHNKLSGSIPHSL-GNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNK 252
L+ LS N+L S+P+ + L+ L L L+ N L L L L L L N+
Sbjct: 77 SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 253 LSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
L F LT+L +++++N + P +++LSE
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSE 172
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 68/166 (40%), Gaps = 5/166 (3%)
Query: 245 FLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGN-LKFLSELNLGFNKLSN 303
+L+L N L F LT+L LY+ N L S+P + N L L+ LNL N+L +
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 304 SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN--LRNLTS 361
LT L L+ N L + L +L L L NQ + +P+ LTS
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTS 149
Query: 362 LVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRC 407
L + L+ N Y+ + N G ++ D +C
Sbjct: 150 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKC 195
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 407 CPKLDSLDFSTNNI--TGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILA 464
CP S +T G G +Q LDL +N + +L+ +L L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60
Query: 465 QNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL-GNLVKLHYLNLSNNHFSREIPIK 523
N+L + L L +L+LS+N+L S+P + L +L L L+ N
Sbjct: 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
Query: 524 LEELIHLSELDLSYNFLGREIPSQI 548
++L L +L L N L + +P +
Sbjct: 120 FDKLTQLKDLRLYQNQL-KSVPDGV 143
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNR 491
+ L L+LS+N + KL+ +L L NQL L QL+ L L N+
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 492 LSNSIPESL-GNLVKLHYLNLSNNHFSREIP 521
L S+P+ + L L Y+ L +N + P
Sbjct: 136 L-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 97/240 (40%), Gaps = 28/240 (11%)
Query: 169 TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228
TN +L L+ N + + +L+ L LS N + + L+NL L L +N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 229 LFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNL 288
L + L L L L NN + + F + +L L ++G L
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-------------DLGEL 170
Query: 289 KFLSELNLG-FNKLSN------------SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
K LS ++ G F LSN IP +L+ L L L N LS P +Q
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 336 LVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHN 394
L+ L KL + +Q Q N NL SLV + L N LT + F +L I L HN
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 410 LDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQ-NQL 468
L++L+ N +T Y S+L+ L L +N I ++ +L L + +L
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELI 528
S L L +L+L+ L IP +L L+KL L+LS NH S P + L+
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNL-REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Query: 529 HLSELDLSYNFLGREIPSQICI--------MQSLEKLNLSHNSLSGVIPRCFEEMH 576
HL +L + I SQI + +QSL ++NL+HN+L+ + F +H
Sbjct: 232 HLQKLWM--------IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 28/179 (15%)
Query: 139 LEVGR---LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPS-------- 187
+E+G L++LN L L+ N L + + L+ L L+L NN + SIPS
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPS 161
Query: 188 ----EIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSL 243
++G LK LS +S G L NL L + + + L P L L
Sbjct: 162 LRRLDLGELKRLS--YISEGAFEG-----LSNLRYLNLAMCNLREIPNLTP-----LIKL 209
Query: 244 YFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLS 302
L+L N LS P F L +L L++ + + NL+ L E+NL N L+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 384 PNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNH 443
P LT + L N+ + PKL +L S NN+ ++ L+ L LSSN
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 444 IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLG-- 501
+ LS L A +S L L + + +E LD S N + N + +
Sbjct: 177 LTH------VDLSLIPSLFHAN--VSYNLLSTLAIPIAVEELDASHNSI-NVVRGPVNVE 227
Query: 502 -NLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLS 560
++KL + NL++ + P L E+DLSYN L + + MQ LE+L +S
Sbjct: 228 LTILKLQHNNLTDTAWLLNYP-------GLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280
Query: 561 HNSLSGV 567
+N L +
Sbjct: 281 NNRLVAL 287
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 29/226 (12%)
Query: 157 LEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSL-GN 215
+E + ++ + LY+ N++ P N+ L+ L N LS S+P + N
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L L + NN L + + SL L+L +N+L+ +L + V Y N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY---N 196
Query: 276 LLSG-SIPCEIGNLKF---------------LSELNLGFNKLSNSIPVSLSNLTNLVFLS 319
LLS +IP + L L+ L L N L+++ L N LV +
Sbjct: 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVD 254
Query: 320 FYQNSLSGAIPKEYQNLVKLTKLLLGNNQ------FQGPIPNLRNL 359
N L + + + +L +L + NN+ + PIP L+ L
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 183 GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS 242
S+P+ I K R L++N+++ P +L NL L+ ++N L + L
Sbjct: 25 ASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 243 LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L L+L +N L F NL +L +Y+YNN
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 246 LELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEI-GNLKFLSELNLGFNKLSNS 304
L L NN+++ P F +L NL LY +N L+ +IP + L L++L+L N L +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 305 IPVSLSNLTNLVFLSFYQN 323
+ NL +L + Y N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 174 LYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLI 233
L+L NN ++ P +L L + + NKL+ L+ L L L++N L +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 234 PSELRNLKSLYFLELGNN 251
NLKSL + L NN
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 407 CPKLDSLDFSTNNIT----GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
CP S D + N ++P+ G + + L L++N I P L +L
Sbjct: 6 CPSQCSCDQTLVNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSRE 519
N+L+ + L QL LDL+ N L SIP + NL L ++ L NN + E
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 222 LFLDNNLLFGLIP---SELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLS 278
L+L+NN + L P L NL+ LYF +NKL+ F LT L L + +N L
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYF---NSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 279 GSIPCEIGNLKFLSELNL 296
NLK L+ + L
Sbjct: 95 SIPRGAFDNLKSLTHIYL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 169 TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228
T +LYLY+N ++ P L L+R L +N+L+ L+ L L L++N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 229 LFGLIPSELRNLKSLYFLELGNN 251
L + NLKSL + L NN
Sbjct: 90 LKSIPRGAFDNLKSLTHIWLLNN 112
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 407 CPKLDSLDFSTNNITG----NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
CP S +T + +G ++P+ I ++Q VL L N I P +L+ +L
Sbjct: 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSREIP 521
L NQL+ + L QL L L+ N+L SIP + NL L ++ L NN +
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD---- 115
Query: 522 IKLEELIHLSE 532
++++LS
Sbjct: 116 CACSDILYLSR 126
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 304 SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSL 362
S+P + T +++L Y N ++ P + L +LT+L L NNQ P LT L
Sbjct: 23 SVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS 401
++ LN N L +F +LT I L +N + S
Sbjct: 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
T VLY+Y+N ++ P L L+ L+L N+L+ LT L LS N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 325 LSGAIPK-EYQNLVKLTKLLLGNNQFQ 350
L +IP+ + NL LT + L NN +
Sbjct: 90 LK-SIPRGAFDNLKSLTHIWLLNNPWD 115
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 200 LSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259
L N+++ P L+ L L LDNN L L L L L L +N+L
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 260 FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
F NL +L +++ NN C ++ +LS
Sbjct: 97 AFDNLKSLTHIWLLNNPWD----CACSDILYLSR 126
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 207 GSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTN 266
S+P + + +L+L +N + L P L L L+L NN+L+ F LT
Sbjct: 22 ASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 267 LGVLYIYNNLLSGSIPCEIGNLKFLSELNL 296
L L + +N L NLK L+ + L
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 169 TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228
T +LYLY+N ++ P L L+R L +N+L+ L+ L L L++N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 229 LFGLIPSELRNLKSLYFLELGNN 251
L + NLKSL + L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 398 GEISSDWGRCPKLDSLDFSTNNITG----NIPSEIGYSSQLEVLDLSSNHIVGEIPTELG 453
I + CP S +T + +G ++P+ I ++Q VL L N I P
Sbjct: 2 ARIRARGSACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQ--VLYLYDNQITKLEPGVFD 59
Query: 454 KLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLS 512
+L+ +L L NQL+ + L QL L L+ N+L SIP + NL L ++ L
Sbjct: 60 RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLL 118
Query: 513 NNHFSREIPIKLEELIHLSE 532
NN + ++++LS
Sbjct: 119 NNPWD----CACSDILYLSR 134
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 304 SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSL 362
S+P + T +++L Y N ++ P + L +LT+L L NNQ P LT L
Sbjct: 31 SVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 88
Query: 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS 401
++ LN N L +F +LT I L +N + S
Sbjct: 89 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 127
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
T VLY+Y+N ++ P L L+ L+L N+L+ LT L LS N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 325 LSGAIPK-EYQNLVKLTKLLLGNNQFQ 350
L +IP+ + NL LT + L NN +
Sbjct: 98 LK-SIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 200 LSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259
L N+++ P L+ L L LDNN L L L L L L +N+L
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 104
Query: 260 FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
F NL +L +++ NN C ++ +LS
Sbjct: 105 AFDNLKSLTHIWLLNNPWD----CACSDILYLSR 134
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 207 GSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTN 266
S+P + + +L+L +N + L P L L L+L NN+L+ F LT
Sbjct: 30 ASVPTGIPTTTQ--VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 267 LGVLYIYNNLLSGSIP-CEIGNLKFLSELNL 296
L L + +N L SIP NLK L+ + L
Sbjct: 88 LTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 117
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 406 RCPKLDSLDFSTNNITG-------NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFF 458
RC +SL + + +IPS G ++ ++ LDLS N I +L +
Sbjct: 21 RCSAQESLSCDASGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANL 78
Query: 459 IKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
LIL ++++ L LEHLDLS N LS+ G L L YLNL N +
Sbjct: 79 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 407 CPKLDSLDFSTNNITG----NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLI 462
CP S +T + +G ++P+ I ++Q VL L N I P +L+ +L
Sbjct: 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLD 60
Query: 463 LAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPE-SLGNLVKLHYLNLSNNHFSREIP 521
L NQL+ + L QL L L+ N+L SIP + NL L ++ L NN +
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNNPWD---- 115
Query: 522 IKLEELIHLSE 532
++++LS
Sbjct: 116 CACSDILYLSR 126
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 169 TNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNL 228
T +LYLY+N ++ P L L+R L +N+L+ L+ L L L++N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 229 LFGLIPSELRNLKSLYFLELGNN 251
L + NL+SL + L NN
Sbjct: 90 LKSIPRGAFDNLRSLTHIWLLNN 112
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 304 SIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-PIPNLRNLTSL 362
S+P + T +++L Y N ++ P + L +LT+L L NNQ P LT L
Sbjct: 23 SVPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 363 VRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEIS 401
++ LN N L +F +LT I L +N + S
Sbjct: 81 TQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACS 119
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
T VLY+Y+N ++ P L L+ L+L N+L+ LT L LS N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 325 LSGAIPK-EYQNLVKLTKLLLGNNQFQ 350
L +IP+ + NL LT + L NN +
Sbjct: 90 LK-SIPRGAFDNLRSLTHIWLLNNPWD 115
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 200 LSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPH 259
L N+++ P L+ L L LDNN L L L L L L +N+L
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 260 FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSE 293
F NL +L +++ NN C ++ +LS
Sbjct: 97 AFDNLRSLTHIWLLNNPWD----CACSDILYLSR 126
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 207 GSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTN 266
S+P + + +L+L +N + L P L L L+L NN+L+ F LT
Sbjct: 22 ASVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 267 LGVLYIYNNLLSGSIP 282
L L + +N L SIP
Sbjct: 80 LTQLSLNDNQLK-SIP 94
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 192/469 (40%), Gaps = 58/469 (12%)
Query: 138 PLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSR 197
P +L L L L N L L + TNL L+L +NS+ + K L
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 198 TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK--SLYFLELGNNKLSG 255
LSHN LS + + L NL L L NN + L EL SL LEL +N++
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 256 PIPHFFGNLTNLGVLYIYNNLLSGSIP---C-EIGN--LKFLSELNLGFNKLSNSIPVSL 309
P F + L L++ N L S+ C E+ N ++ LS N + SN+ + L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 310 SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLN 368
TNL L N+L+ + L +L L N Q + L L ++ + L
Sbjct: 246 K-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428
R++ +IS +L ID + S W +C L+ L+ N+I G +
Sbjct: 305 RSFTKQSIS-----LASLPKID--------DFSFQWLKC--LEHLNMEDNDIPGIKSNMF 349
Query: 429 GYSSQLEVLDLSSNH-----IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLE 483
L+ L LS++ + E L I L L +N++S S L LE
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLE 408
Query: 484 HLDLSSNRLSNSIP----ESLGNLVKLH-----YLNLSNNHFS----------REIPIK- 523
LDL N + + L N+ +++ YL L+ N F+ R + +K
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 524 -------LEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565
+ L +L+ LDLS N + + ++ LE L+L HN+L+
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 125/351 (35%), Gaps = 69/351 (19%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
TN+ VL + +N L L+ L++GFN +S P L L L+ N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYP 384
LS K + LT+L L +N Q +++ N F
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQ-------------KIKNN----------PFVKQK 121
Query: 385 NLTFIDLSHNNFYGEISSDWGR--CPKLDSLDFSTNNITGNIPSE---IGYSSQLEVLDL 439
NL +DLSHN G S+ G + +NN + SE I +S L+ L+L
Sbjct: 122 NLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 440 SSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGL--------------------- 478
SSN I P + L L QL L+ KL L
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 479 --------LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530
L LDLS N L+ +S L +L Y L N+ L L ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 531 SELDLSYNFLGREI-----PS----QICIMQSLEKLNLSHNSLSGVIPRCF 572
L+L +F + I P ++ LE LN+ N + G+ F
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 479 LVQLEHLDLSSNRLSNSIPES--------LGNLVKLHYLNLSNNHFSREIPIKL-EELIH 529
L +LE LDL N L+ + L L LH LNL +N F EIP+++ ++L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561
Query: 530 LSELDLSYNFLGREIPSQICIMQ-SLEKLNLSHNSLSGVIPRCF 572
L +DL N L +P+ + Q SL+ LNL N ++ V + F
Sbjct: 562 LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 480 VQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNF 539
V E D S +L+ +P+ L + LNL++N R L+ LD+ +N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 540 LGREIPSQICIMQSLEKLNLSHNSLSGVIPRCF 572
+ + P + L+ LNL HN LS + + F
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 168/421 (39%), Gaps = 49/421 (11%)
Query: 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209
L L N L L + + L L + N++S P L L L HN+LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGV 269
+ +NL L L +N + + + K+L L+L +N LS T LG
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---------TKLGT 140
Query: 270 LYIYNNLLSGSIP-CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGA 328
NL + +I LK EL++ N ++L L N +
Sbjct: 141 QVQLENLQELLLSNNKIQALKS-EELDIFAN-------------SSLKKLELSSNQIKEF 186
Query: 329 IPKEYQNLVKLTKLLLGNNQFQGP------IPNLRNLTSLVRVRLNRNYLTGNISESF-- 380
P + + +L L L N Q GP L N TS+ + L+ + L+ + +F
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLG 244
Query: 381 YIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLS 440
+ NLT +DLS+NN + + P+L+ NNI + + L+L
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304
Query: 441 SNHIVGEIP----TELGKLSF-FIKLI----LAQNQLSGQLSPKLGLLVQLEHLDLSSN- 490
+ I ++ SF ++K + + N + G S L+ L++L LS++
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364
Query: 491 ----RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPS 546
L+N SL + LH LNL+ N S+ L HL LDL N +G+E+
Sbjct: 365 TSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423
Query: 547 Q 547
Q
Sbjct: 424 Q 424
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 434 LEVLDLSSNHIVGE--IPTELGKLSFFIKLILA-----QNQLSGQLSPKLGLLVQLEHLD 486
L LDLS N +GE + + L L F +LA SG S VQL+ LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234
Query: 487 LSSNRLSNSI-PESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGR 542
LS N L ++ S +L+ LNLS +++P L LS LDLSYN L R
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDR 288
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 192/469 (40%), Gaps = 58/469 (12%)
Query: 138 PLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSR 197
P +L L L L N L L + TNL L+L +NS+ + K L
Sbjct: 76 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 198 TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK--SLYFLELGNNKLSG 255
LSHN LS + + L NL L L NN + L EL SL LEL +N++
Sbjct: 136 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 195
Query: 256 PIPHFFGNLTNLGVLYIYNNLLSGSIP---C-EIGN--LKFLSELNLGFNKLSNSIPVSL 309
P F + L L++ N L S+ C E+ N ++ LS N + SN+ + L
Sbjct: 196 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 255
Query: 310 SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLN 368
TNL L N+L+ + L +L L N Q + L L ++ + L
Sbjct: 256 K-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Query: 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428
R++ +IS +L ID + S W +C L+ L+ N+I G +
Sbjct: 315 RSFTKQSIS-----LASLPKID--------DFSFQWLKC--LEHLNMEDNDIPGIKSNMF 359
Query: 429 GYSSQLEVLDLSSNH-----IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLE 483
L+ L LS++ + E L I L L +N++S S L LE
Sbjct: 360 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLE 418
Query: 484 HLDLSSNRLSNSIP----ESLGNLVKLH-----YLNLSNNHFS----------REIPIK- 523
LDL N + + L N+ +++ YL L+ N F+ R + +K
Sbjct: 419 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 478
Query: 524 -------LEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565
+ L +L+ LDLS N + + ++ LE L+L HN+L+
Sbjct: 479 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 125/351 (35%), Gaps = 69/351 (19%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
TN+ VL + +N L L+ L++GFN +S P L L L+ N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYP 384
LS K + LT+L L +N Q +++ N F
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQ-------------KIKNN----------PFVKQK 131
Query: 385 NLTFIDLSHNNFYGEISSDWGR--CPKLDSLDFSTNNITGNIPSE---IGYSSQLEVLDL 439
NL +DLSHN G S+ G + +NN + SE I +S L+ L+L
Sbjct: 132 NLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 440 SSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGL--------------------- 478
SSN I P + L L QL L+ KL L
Sbjct: 189 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 248
Query: 479 --------LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530
L LDLS N L+ +S L +L Y L N+ L L ++
Sbjct: 249 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 308
Query: 531 SELDLSYNFLGREI-----PS----QICIMQSLEKLNLSHNSLSGVIPRCF 572
L+L +F + I P ++ LE LN+ N + G+ F
Sbjct: 309 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 359
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 479 LVQLEHLDLSSNRLSNSIPES--------LGNLVKLHYLNLSNNHFSREIPIKL-EELIH 529
L +LE LDL N L+ + L L LH LNL +N F EIP+++ ++L
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 571
Query: 530 LSELDLSYNFLGREIPSQICIMQ-SLEKLNLSHNSLSGVIPRCF 572
L +DL N L +P+ + Q SL+ LNL N ++ V + F
Sbjct: 572 LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 470 GQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIH 529
G S V E D S +L+ +P+ L + LNL++N R
Sbjct: 4 GSASSTTKCTVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQ 60
Query: 530 LSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLSGVIPRCF 572
L+ LD+ +N + + P + L+ LNL HN LS + + F
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 103
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 168/421 (39%), Gaps = 49/421 (11%)
Query: 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209
L L N L L + + L L + N++S P L L L HN+LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGV 269
+ +NL L L +N + + + K+L L+L +N LS T LG
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---------TKLGT 150
Query: 270 LYIYNNLLSGSIP-CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGA 328
NL + +I LK EL++ N ++L L N +
Sbjct: 151 QVQLENLQELLLSNNKIQALKS-EELDIFAN-------------SSLKKLELSSNQIKEF 196
Query: 329 IPKEYQNLVKLTKLLLGNNQFQGP------IPNLRNLTSLVRVRLNRNYLTGNISESF-- 380
P + + +L L L N Q GP L N TS+ + L+ + L+ + +F
Sbjct: 197 SPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLG 254
Query: 381 YIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLS 440
+ NLT +DLS+NN + + P+L+ NNI + + L+L
Sbjct: 255 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 314
Query: 441 SNHIVGEIP----TELGKLSF-FIKLI----LAQNQLSGQLSPKLGLLVQLEHLDLSSN- 490
+ I ++ SF ++K + + N + G S L+ L++L LS++
Sbjct: 315 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 374
Query: 491 ----RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPS 546
L+N SL + LH LNL+ N S+ L HL LDL N +G+E+
Sbjct: 375 TSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 433
Query: 547 Q 547
Q
Sbjct: 434 Q 434
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 158 EGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALSHNKLSGSIPHSL-GN 215
+GL G ++ L L +N L S+P + L L++ +LS N++ S+P +
Sbjct: 17 KGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDK 74
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L+ L IL+L N L L L L L L N+L F LT+L ++++ N
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Query: 276 LLSGSIP 282
S P
Sbjct: 135 PWDCSCP 141
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
S+ L L++N L L L L L L N++ F LT L +LY++ N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 277 LSGSIPCEI-GNLKFLSELNLGFNKLSNSIPVSL-SNLTNLVFLSFYQNSLSGAIPK 331
L S+P + L L EL L N+L S+P + LT+L + + N + P+
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 143 RLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEI-GNLKFLSRTALS 201
+L+ L L+L N ++ L LT L ILYL+ N L S+P+ + L L AL
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 202 HNKLSGSIPHSL-GNLSNLVILFLDNN 227
N+L S+P + L++L ++L N
Sbjct: 109 TNQLK-SVPDGIFDRLTSLQKIWLHTN 134
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 292 SELNLGFNKLSNSIPVSL-SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
+ L L NKL S+P + LT L LS QN + + L KLT L L N+ Q
Sbjct: 31 TRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 351 GPIPN--LRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCP 408
+PN LT L + L+ N L F +L I L H N + CP
Sbjct: 90 S-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL-HTNPWD------CSCP 141
Query: 409 KLDSL 413
++D L
Sbjct: 142 RIDYL 146
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 242 SLYFLELGNNKLSGPIPH-FFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNK 300
S LEL +NKL +PH F LT L L + N + L L+ L L NK
Sbjct: 29 SATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 301 LSNSIPVSL-SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNL 359
L S+P + LT L L+ N L + L L K+ L N + P + L
Sbjct: 88 L-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 146
Query: 360 T 360
+
Sbjct: 147 S 147
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 125/469 (26%), Positives = 192/469 (40%), Gaps = 58/469 (12%)
Query: 138 PLEVGRLSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSR 197
P +L L L L N L L + TNL L+L +NS+ + K L
Sbjct: 71 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 198 TALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLK--SLYFLELGNNKLSG 255
LSHN LS + + L NL L L NN + L EL SL LEL +N++
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 256 PIPHFFGNLTNLGVLYIYNNLLSGSIP---C-EIGN--LKFLSELNLGFNKLSNSIPVSL 309
P F + L L++ N L S+ C E+ N ++ LS N + SN+ + L
Sbjct: 191 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 250
Query: 310 SNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPN-LRNLTSLVRVRLN 368
TNL L N+L+ + L +L L N Q + L L ++ + L
Sbjct: 251 K-WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Query: 369 RNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEI 428
R++ +IS +L ID + S W +C L+ L+ N+I G +
Sbjct: 310 RSFTKQSIS-----LASLPKID--------DFSFQWLKC--LEHLNMEDNDIPGIKSNMF 354
Query: 429 GYSSQLEVLDLSSNH-----IVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLE 483
L+ L LS++ + E L I L L +N++S S L LE
Sbjct: 355 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESDAFSWLGHLE 413
Query: 484 HLDLSSNRLSNSIP----ESLGNLVKLH-----YLNLSNNHFS----------REIPIK- 523
LDL N + + L N+ +++ YL L+ N F+ R + +K
Sbjct: 414 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 473
Query: 524 -------LEELIHLSELDLSYNFLGREIPSQICIMQSLEKLNLSHNSLS 565
+ L +L+ LDLS N + + ++ LE L+L HN+L+
Sbjct: 474 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 125/351 (35%), Gaps = 69/351 (19%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
TN+ VL + +N L L+ L++GFN +S P L L L+ N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYP 384
LS K + LT+L L +N Q +++ N F
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQ-------------KIKNN----------PFVKQK 126
Query: 385 NLTFIDLSHNNFYGEISSDWGR--CPKLDSLDFSTNNITGNIPSE---IGYSSQLEVLDL 439
NL +DLSHN G S+ G + +NN + SE I +S L+ L+L
Sbjct: 127 NLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 440 SSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGL--------------------- 478
SSN I P + L L QL L+ KL L
Sbjct: 184 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 243
Query: 479 --------LVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHL 530
L LDLS N L+ +S L +L Y L N+ L L ++
Sbjct: 244 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 303
Query: 531 SELDLSYNFLGREI-----PS----QICIMQSLEKLNLSHNSLSGVIPRCF 572
L+L +F + I P ++ LE LN+ N + G+ F
Sbjct: 304 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 354
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 479 LVQLEHLDLSSNRLSNSIPES--------LGNLVKLHYLNLSNNHFSREIPIKL-EELIH 529
L +LE LDL N L+ + L L LH LNL +N F EIP+++ ++L
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 566
Query: 530 LSELDLSYNFLGREIPSQICIMQ-SLEKLNLSHNSLSGVIPRCF 572
L +DL N L +P+ + Q SL+ LNL N ++ V + F
Sbjct: 567 LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 480 VQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNF 539
V E D S +L+ +P+ L + + LNL++N R L+ LD+ +N
Sbjct: 9 VSHEVADCSHLKLT-QVPDDLPTNITV--LNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 65
Query: 540 LGREIPSQICIMQSLEKLNLSHNSLSGVIPRCF 572
+ + P + L+ LNL HN LS + + F
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 98
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 168/421 (39%), Gaps = 49/421 (11%)
Query: 150 LTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSI 209
L L N L L + + L L + N++S P L L L HN+LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 210 PHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGV 269
+ +NL L L +N + + + K+L L+L +N LS T LG
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS---------TKLGT 145
Query: 270 LYIYNNLLSGSIP-CEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGA 328
NL + +I LK EL++ N ++L L N +
Sbjct: 146 QVQLENLQELLLSNNKIQALKS-EELDIFAN-------------SSLKKLELSSNQIKEF 191
Query: 329 IPKEYQNLVKLTKLLLGNNQFQGP------IPNLRNLTSLVRVRLNRNYLTGNISESF-- 380
P + + +L L L N Q GP L N TS+ + L+ + L+ + +F
Sbjct: 192 SPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLG 249
Query: 381 YIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLS 440
+ NLT +DLS+NN + + P+L+ NNI + + L+L
Sbjct: 250 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 309
Query: 441 SNHIVGEIP----TELGKLSF-FIKLI----LAQNQLSGQLSPKLGLLVQLEHLDLSSN- 490
+ I ++ SF ++K + + N + G S L+ L++L LS++
Sbjct: 310 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 369
Query: 491 ----RLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPS 546
L+N SL + LH LNL+ N S+ L HL LDL N +G+E+
Sbjct: 370 TSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 428
Query: 547 Q 547
Q
Sbjct: 429 Q 429
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 380 FYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNIPSEIGYSSQLEVLDL 439
F P LT + L N+ + PKL +L S NN+ ++ L+ L L
Sbjct: 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 440 SSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPES 499
SSN + LS L A +S L L + + +E LD S N + N +
Sbjct: 179 SSNRLTH------VDLSLIPSLFHAN--VSYNLLSTLAIPIAVEELDASHNSI-NVVRGP 229
Query: 500 LG---NLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEK 556
+ ++KL + NL++ + P L E+DLSYN L + + MQ LE+
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYP-------GLVEVDLSYNELEKIMYHPFVKMQRLER 282
Query: 557 LNLSHNSLSGV 567
L +S+N L +
Sbjct: 283 LYISNNRLVAL 293
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 29/226 (12%)
Query: 157 LEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSL-GN 215
+E + ++ + LY+ N++ P N+ L+ L N LS S+P + N
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145
Query: 216 LSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNN 275
L L + NN L + + SL L+L +N+L+ +L + V Y N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY---N 202
Query: 276 LLSG-SIPCEIGNLKF---------------LSELNLGFNKLSNSIPVSLSNLTNLVFLS 319
LLS +IP + L L+ L L N L+++ L N LV +
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVD 260
Query: 320 FYQNSLSGAIPKEYQNLVKLTKLLLGNNQ------FQGPIPNLRNL 359
N L + + + +L +L + NN+ + PIP L+ L
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQL 482
+IPS G ++ ++ LDLS N I +L + LIL ++++ L L
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 483 EHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
EHLDLS N LS+ G L L YLNL N +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQL 482
+IPS G + ++ LDLS+N I ++L + L+L N ++ L L
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 483 EHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
EHLDLS N LSN L L +LNL N +
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 477 GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536
GL ++ LDLS+NR++ L V L L L++N + L L LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 537 YNFLGREIPSQICIMQSLEKLNL 559
YN+L S + SL LNL
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNL 131
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 494 NSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQICIMQS 553
NSIP L VK L+LSNN + L+ ++L L L+ N + + S
Sbjct: 44 NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 554 LEKLNLSHNSLSGVIPRCFE 573
LE L+LS+N LS + F+
Sbjct: 102 LEHLDLSYNYLSNLSSSWFK 121
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 423 NIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQL 482
+IPS G + ++ LDLS+N I ++L + L+L N ++ L L
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 483 EHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
EHLDLS N LSN L L +LNL N +
Sbjct: 77 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 477 GLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLS 536
GL ++ LDLS+NR++ L V L L L++N + L L LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 537 YNFLGREIPSQICIMQSLEKLNL 559
YN+L S + SL LNL
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 482 LEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541
++ LDLS N LS L KL LNLS+N + LE L L LDL+ N++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV- 92
Query: 542 REIPSQICIMQSLEKLNLSHNSLSGV 567
++ + S+E L+ ++N++S V
Sbjct: 93 ----QELLVGPSIETLHAANNNISRV 114
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 355 NLRNLTSLVRVRLNRNYLTGNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLD 414
+L +L++L + LN NY+ + + P++ + ++NN +S G+ K ++
Sbjct: 75 DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSCSRGQGKK--NIY 126
Query: 415 FSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIK-LILAQN---QLSG 470
+ N IT + G S+++ LDL N I EL S ++ L L N + G
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 471 QLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHF 516
Q+ + +L+ LDLSSN+L+ PE + + +++L NN
Sbjct: 187 QV-----VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL 226
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 241 KSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNK 300
+S+ L L +N L+G + F + VL ++NN + SIP ++ +L+ L ELN+ N+
Sbjct: 428 ESILVLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQ 484
Query: 301 LSNSIPVSLSNLTNLVFLSFYQNSLSGAIP 330
L + LT+L ++ + N P
Sbjct: 485 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 430 YSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSS 489
+S++LE + SN + +P +L + L L+QN +S P + L +L L LS
Sbjct: 28 FSNELESMVDYSNRNLTHVPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLSH 85
Query: 490 NRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYN 538
NR+ + L YL++S+N I + L LDLS+N
Sbjct: 86 NRIRSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFN 131
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQ----LEHLDL 487
S L+ + N + L LIL +N L K+ L+ + LE LD+
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDV 410
Query: 488 SSNRL-SNSIPESLGNLVKLHYLNLSNNHFS----REIPIKLEELIHLSELDLSYNFLGR 542
S N L S++ + + LNLS+N + R +P K++ L DL N +
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL------DLHNNRI-M 463
Query: 543 EIPSQICIMQSLEKLNLSHNSLSGVIPRCFEEM 575
IP + +Q+L++LN++ N L V F+ +
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 410 LDSLDFSTNNITGNI-PSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQL 468
L++LD S N++ + ++ + VL+LSSN + G + L +K++ N
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNR 461
Query: 469 SGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL-GNLVKLHYLNLSNNHFSREIP 521
+ + L L+ L+++SN+L S+P+ + L L Y+ L +N + P
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL-SNLTNLVFLSFYQN 323
T VL++Y N ++ P +L L+ LNL N+L+ ++PV + LT L L+ + N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHIN 98
Query: 324 SLSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L + NL LT + L NN +
Sbjct: 99 QLKSIPMGVFDNLKSLTHIYLFNNPWD 125
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 294 LNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQG-P 352
L+L N+++ P +LT L +L+ N L+ + L KLT L L NQ + P
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 353 IPNLRNLTSLVRVRLNRNYLTGNISESFYI 382
+ NL SL + L N S+ Y+
Sbjct: 105 MGVFDNLKSLTHIYLFNNPWDCECSDILYL 134
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 405 GRCPKLDSLDFSTNNIT----GNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIK 460
CP S +T N ++P+ I ++Q VL L N I P L+
Sbjct: 11 AACPSQCSCSGTTVNCQERSLASVPAGIPTTTQ--VLHLYINQITKLEPGVFDSLTQLTY 68
Query: 461 LILAQNQLSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESL-GNLVKLHYLNLSNNHFSRE 519
L LA NQL+ L +L HL L N+L SIP + NL L ++ L NN + E
Sbjct: 69 LNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNNPWDCE 127
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 374 GNISESFYIYPNLTFIDLSHNNFYGEISSDWGRCPKLDSLDFSTNNITGNI-PSEI--GY 430
G+++ + PN+T Y + + P D + ST NI + P +I Y
Sbjct: 2 GSLNPCIEVVPNIT---------YQCMDQKLSKVP--DDIPSSTKNIDLSFNPLKILKSY 50
Query: 431 S----SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLD 486
S S+L+ LDLS I L LIL N + L LE+L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 487 LSSNRLSNSIPESLGNLVKLHYLNLSNNHF-SREIPIKLEELIHLSELDLSYNFLGREIP 545
+L++ +G L+ L LN+++N S ++P L +L +DLSYN++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 546 SQICIMQSLEKLNLS 560
+ + ++ ++NLS
Sbjct: 171 NDLQFLRENPQVNLS 185
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 8/198 (4%)
Query: 183 GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS 242
IPS N+ LS N L +S N S L L L + + L
Sbjct: 28 DDIPSSTKNID------LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81
Query: 243 LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKL- 301
L L L N + P F LT+L L L+ IG L L +LN+ N +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 302 SNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTS 361
S +P SNLTNLV + N + + Q L + ++ L + PI +++ +
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QA 200
Query: 362 LVRVRLNRNYLTGNISES 379
++L+ L GN + S
Sbjct: 201 FQGIKLHELTLRGNFNSS 218
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 81/188 (43%), Gaps = 41/188 (21%)
Query: 168 LTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNN 227
L NL L L NN ++ P I L +++ L+ NKL+ P L NL NL LFLD N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 120
Query: 228 LLF-------------------------GLIPSELRNLKSLYFLELGNNKLSGPIPHFFG 262
+ GL+ L L+SLY LGNNK++
Sbjct: 121 KVKDLSSLKDLKKLKSLSLEHNGISDINGLV--HLPQLESLY---LGNNKITDIT--VLS 173
Query: 263 NLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLS-FY 321
LT L L + +N +S +P + L L L L N +S+ +L+ L NL L F
Sbjct: 174 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 229
Query: 322 QNSLSGAI 329
Q L+ I
Sbjct: 230 QECLNKPI 237
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%)
Query: 224 LDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPC 283
L+ N + + P K L ++L NN++S P F L +L L +Y N ++
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 284 EIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLL 343
L L L L NK++ + +L NL LS Y N L + L + +
Sbjct: 99 LFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 344 LGNNQF 349
L N F
Sbjct: 159 LAQNPF 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS-------------------- 242
+ S +P NL+NL L L +N + + ++LR L
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 243 -------LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIP 282
L L L N+L F LT+L ++++ N S P
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 502 NLVKLHYLNLSNNHFSRE---IPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLN 558
+++K+ Y ++ H + + + LE+L+ ++ LDLS+N L R +P + ++ LE L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQ 492
Query: 559 LSHNSLSGV 567
S N+L V
Sbjct: 493 ASDNALENV 501
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
++ VL++ + L+ + C + L ++ L+L N+L ++P +L+ L L L N+
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA 497
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L NL +L +LLL NN+ Q
Sbjct: 498 LENV--DGVANLPRLQELLLCNNRLQ 521
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 502 NLVKLHYLNLSNNHFSRE---IPIKLEELIHLSELDLSYNFLGREIPSQICIMQSLEKLN 558
+++K+ Y ++ H + + + LE+L+ ++ LDLS+N L R +P + ++ LE L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQ 492
Query: 559 LSHNSLSGV 567
S N+L V
Sbjct: 493 ASDNALENV 501
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 265 TNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNS 324
++ VL++ + L+ + C + L ++ L+L N+L ++P +L+ L L L N+
Sbjct: 441 ADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA 497
Query: 325 LSGAIPKEYQNLVKLTKLLLGNNQFQ 350
L NL +L +LLL NN+ Q
Sbjct: 498 LENV--DGVANLPRLQELLLCNNRLQ 521
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 85/194 (43%), Gaps = 16/194 (8%)
Query: 139 LEVGR---LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGN-LKF 194
+EVG L+SLN L L+ N L + + L+ L L+L NN + SIPS N +
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS 172
Query: 195 LSRTALSHNK----LSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSLYFLELGN 250
L R L K +S L NL L + + + L P L L LE+
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-----LVGLEELEMSG 227
Query: 251 NKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKLSNSIPVSL- 309
N P F L++L L++ N+ +S L L ELNL N LS S+P L
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286
Query: 310 SNLTNLVFLSFYQN 323
+ L LV L + N
Sbjct: 287 TPLRYLVELHLHHN 300
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 432 SQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSNR 491
S+L+ LDLS I L LIL N + L LE+L +
Sbjct: 51 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 110
Query: 492 LSNSIPESLGNLVKLHYLNLSNNHF-SREIPIKLEELIHLSELDLSYNFLGREIPSQICI 550
L++ +G L+ L LN+++N S ++P L +L +DLSYN++ + +
Sbjct: 111 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Query: 551 MQSLEKLNLS 560
++ ++NLS
Sbjct: 171 LRENPQVNLS 180
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 8/198 (4%)
Query: 183 GSIPSEIGNLKFLSRTALSHNKLSGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS 242
IPS N+ LS N L +S N S L L L + + L
Sbjct: 23 DDIPSSTKNID------LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 76
Query: 243 LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNLGFNKL- 301
L L L N + P F LT+L L L+ IG L L +LN+ N +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 302 SNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQFQGPIPNLRNLTS 361
S +P SNLTNLV + N + + Q L + ++ L + PI +++ +
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QA 195
Query: 362 LVRVRLNRNYLTGNISES 379
++L+ L GN + S
Sbjct: 196 FQGIKLHELTLRGNFNSS 213
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSL 243
+ S +P NL+NL L L +N + + ++LR L +
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 9/146 (6%)
Query: 378 ESFYIYPNLTFIDLSHNNFYGEISSDWGRCP-KLDSL------DFSTNNITGNIPSEIGY 430
E +P LT +DLS N GE CP K ++ + TG +
Sbjct: 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222
Query: 431 SSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQLSGQLSPKLGLLVQLEHLDLSSN 490
Q LDLS N + + + + L +G GL +L LDLSSN
Sbjct: 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSN 282
Query: 491 RLSNSIPESLGNLVKLHYLNLSNNHF 516
RL N P+ L ++ L L N F
Sbjct: 283 RL-NRAPQP-DELPEVDNLTLDGNPF 306
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKS-------------------- 242
+ S +P NL+NL L L +N + + ++LR L
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 243 -------LYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIP 282
L L L N+L F LT+L ++++ N S P
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSL 243
+ S +P NL+NL L L +N + + ++LR L +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%)
Query: 224 LDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPC 283
L+ N + + P K L ++L NN++S P F L +L L +Y N ++
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 284 EIGNLKFLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLL 343
L L L L NK++ + +L NL LS Y N L + L + +
Sbjct: 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 344 LGNNQF 349
L N F
Sbjct: 159 LAQNPF 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 144 LSSLNNLTLYANCLEGLIPHSLGNLTNLAILYLYNNSLSGSIPSEIGNLKFLSRTALSHN 203
LS L+ L L N ++ L + L++L L +L+ IG+LK L ++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 204 KL-SGSIPHSLGNLSNLVILFLDNNLLFGLIPSELRNLKSL 243
+ S +P NL+NL L L +N + + ++LR L +
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 482 LEHLDLSSNRLSNSIPESLGNLVKLHYLNLSNNHFSREIPIKLEELIHLSELDLSYNFLG 541
++ LDLS N LS L KL LNLS+N + LE L L LDL+ N++
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV- 92
Query: 542 REIPSQICIMQSLEKLNLSHNSLSGV 567
++ + S+E L+ ++N++S V
Sbjct: 93 ----QELLVGPSIETLHAANNNISRV 114
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNNQF 349
KL KL L NNQ
Sbjct: 147 TPKLEKLSLANNQL 160
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 453 GKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511
G L L L+ NQL Q P LG L L LD+S NRL++ +L L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
N P L L +L L+ N L E+P+ + +++L+ L L NSL IP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 571 CF 572
F
Sbjct: 190 GF 191
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNNQF 349
KL KL L NNQ
Sbjct: 147 TPKLEKLSLANNQL 160
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 453 GKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511
G L L L+ NQL Q P LG L L LD+S NRL++ +L L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
N P L L +L L+ N L E+P+ + +++L+ L L NSL IP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 571 CF 572
F
Sbjct: 190 GF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNNQF 349
KL KL L NNQ
Sbjct: 147 TPKLEKLSLANNQL 160
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 453 GKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511
G L L L+ NQL Q P LG L L LD+S NRL++ +L L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
N P L L +L L+ N L E+P+ + +++L+ L L NSL IP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 571 CF 572
F
Sbjct: 190 GF 191
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 52/291 (17%)
Query: 290 FLSELNLGFNKLSNSIPVSLSNLTNLVFLSFYQNSLSGAIPKEYQNLVKLTKLLLGNNQF 349
F SE+ F ++ + +S L L L + +S++ E L LTKL+ +N
Sbjct: 20 FASEVAAAF-EMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNI 76
Query: 350 QGPIPNLRNLTSLVRVRLNRNYLTGNISESFYIYP--NLTFIDLSHNNFYGEISSDWGRC 407
+L T+L + + N LT + P LT+++ N D +
Sbjct: 77 --TTLDLSQNTNLTYLACDSNKLTN-----LDVTPLTKLTYLNCDTNKL---TKLDVSQN 126
Query: 408 PKLDSLDFSTNNITGNIPSEIGYSSQLEVLDLSSNHIVGEIPTELGKLSFFIKLILAQNQ 467
P L L+ + N +T ++ +++QL LD N + ++ + Q Q
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD------------VTPQTQ 171
Query: 468 LSGQLSPKLGLLVQLEHLDLSSNRLSNSIPESLGNLVKLH--------YLNLSNNHFSRE 519
L+ L ++ LD+S N+L N + N+ KL +L+ S+N +
Sbjct: 172 LTT-LDCSFN---KITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE- 226
Query: 520 IPIKLEELIHLSELDLSYNFLGR-------EIPSQICIMQSLEKLNLSHNS 563
I + L L+ D S N L ++ + CI L +++L+HN+
Sbjct: 227 --IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNNQF 349
KL KL L NNQ
Sbjct: 147 TPKLEKLSLANNQL 160
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 453 GKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511
G L L L+ NQL Q P LG L L LD+S NRL++ +L L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
N P L L +L L+ N L E+P+ + +++L+ L L NSL IP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 571 CF 572
F
Sbjct: 190 GF 191
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 237 LRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNLLSGSIPCEIGNLKFLSELNL 296
L ++++L LEL N P H F +L NL + +N L G + L +LNL
Sbjct: 143 LTDMRNLSHLELRANIEEMP-SHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNL 201
Query: 297 GFNKLSNSIPVSL-SNLTNLVFLSFYQNSLSGAIPK 331
N+L S+P + LT+L + + N + P+
Sbjct: 202 ASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|2W2J|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Related
Protein Viii
Length = 291
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 46 HGGRVNSINLTNIGLKGTLHDFSFSSFPHLAYLDLWSNQLFGNIPPQIGN 95
H GR N +G+ H +F +FP +L W++ LFG+I +G
Sbjct: 119 HWGRENQ--------RGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGK 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 453 GKLSFFIKLILAQNQLSGQLSPKLG-LLVQLEHLDLSSNRLSNSIPESLGNLVKLHYLNL 511
G L L L+ NQL Q P LG L L LD+S NRL++ +L L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 512 SNNHFSREIPIKLEELIHLSELDLSYNFLGREIPSQIC-IMQSLEKLNLSHNSLSGVIPR 570
N P L L +L L+ N L E+P+ + +++L+ L L NSL IP+
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Query: 571 CF 572
F
Sbjct: 190 GF 191
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNNQF 349
KL KL L NN
Sbjct: 147 TPKLEKLSLANNDL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNN 347
KL KL L NN
Sbjct: 147 TPKLEKLSLANN 158
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNN 347
KL KL L NN
Sbjct: 147 TPKLEKLSLANN 158
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 217 SNLVILFLDNNLLFGLIPSELRNLKSLYFLELGNNKLSGPIPHFFGNLTNLGVLYIYNNL 276
+ IL L NLL+ + L L L L +L+ G L LG L + +N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQ 88
Query: 277 LSGSIPCEIGNLKFLSELNLGFNKLSNSIPV-SLSNLTNLVFLSFYQNSLSGAIPKEYQN 335
L S+P L L+ L++ FN+L+ S+P+ +L L L L N L P
Sbjct: 89 LQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 336 LVKLTKLLLGNN 347
KL KL L NN
Sbjct: 147 TPKLEKLSLANN 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,183,845
Number of Sequences: 62578
Number of extensions: 668414
Number of successful extensions: 2647
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 623
length of query: 576
length of database: 14,973,337
effective HSP length: 104
effective length of query: 472
effective length of database: 8,465,225
effective search space: 3995586200
effective search space used: 3995586200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)